RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16649
(83 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 59.4 bits (143), Expect = 2e-13
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
+ DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI+NWIRNIEE+ASA+V
Sbjct: 53 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 112
Query: 77 EKMLLGN 83
EKM+LGN
Sbjct: 113 EKMILGN 119
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 57.9 bits (139), Expect = 1e-12
Identities = 33/69 (47%), Positives = 52/69 (75%)
Query: 15 FQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASA 74
+ DTAGQERFRTIT++YYRG+ GI++VYD+T+++SF+ +K W++ I+ A++
Sbjct: 51 DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS 110
Query: 75 NVEKMLLGN 83
V K+L+GN
Sbjct: 111 TVLKLLVGN 119
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 55.6 bits (133), Expect = 6e-12
Identities = 34/50 (68%), Positives = 39/50 (78%)
Query: 15 FQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNW 64
+ DTAGQERFRTITTAYYRGAMGI+LVYDIT+E++F NIK W
Sbjct: 47 NGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 96
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 53.7 bits (128), Expect = 3e-11
Identities = 35/70 (50%), Positives = 46/70 (65%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ DTAGQERFR++T AYYR A ++L+YD+TN+ SFDNI+ W+ I E A
Sbjct: 51 VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 110
Query: 74 ANVEKMLLGN 83
+V MLLGN
Sbjct: 111 HDVALMLLGN 120
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 50.6 bits (120), Expect = 5e-10
Identities = 30/67 (44%), Positives = 47/67 (70%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
DTAGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + ++A +N+
Sbjct: 51 KTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI 110
Query: 77 EKMLLGN 83
ML+GN
Sbjct: 111 VIMLVGN 117
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 50.6 bits (120), Expect = 5e-10
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
+ DTAGQERFR+IT +YYR A ++L YDIT E+SF + W+R IE+ AS V
Sbjct: 52 EKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV 111
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 112 ITVLVGN 118
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 49.9 bits (118), Expect = 1e-09
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ DTAGQER+RTITTAYYRGAMG +L+YDITNE+SF+ +++W I+ +
Sbjct: 49 RNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW 108
Query: 74 ANVEKMLLGN 83
N + +L+GN
Sbjct: 109 DNAQVLLVGN 118
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 49.1 bits (116), Expect = 2e-09
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 16 QHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASAN 75
+ + DTAGQERFRT+T +YYRGA G++LVYD+T +F + NW+ +E + N
Sbjct: 53 GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 112
Query: 76 VEKMLL 81
+L
Sbjct: 113 DIVNML 118
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 49.1 bits (116), Expect = 2e-09
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENASANV 76
+ DTAGQERFR +T +YYRGA G ++VYDIT +++++ +W+ + + N
Sbjct: 51 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNT 110
Query: 77 EKMLLGN 83
+L+GN
Sbjct: 111 VIILIGN 117
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 46.4 bits (109), Expect = 2e-08
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ DTAGQERFR++T +YYRGA G +LVYDIT+ ++++ + NW+ + AS
Sbjct: 49 VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS 108
Query: 74 ANVEKMLLGN 83
N+ +L GN
Sbjct: 109 QNIVIILCGN 118
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 45.3 bits (106), Expect = 6e-08
Identities = 30/68 (44%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 17 HNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEN-ASAN 75
H+ DTAGQERFR++TTA++R AMG +L++D+T+++SF N++NW+ ++ N N
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 76 VEKMLLGN 83
+ +L+GN
Sbjct: 122 PDIVLIGN 129
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 44.5 bits (104), Expect = 1e-07
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L ++ DTAGQERF + YYR + G +LVYDIT+E SF +KNW+
Sbjct: 39 SFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWV 98
Query: 66 RNIEENASANVEKMLLGN 83
+ + + + ++GN
Sbjct: 99 KELRKMLGNEICLCIVGN 116
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 43.8 bits (102), Expect = 1e-07
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L + DTAGQERFR++ +Y R + ++VYDITN SF WI
Sbjct: 36 DFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWI 95
Query: 66 RNIEENASANVEKMLLGN 83
++ ++V ML+GN
Sbjct: 96 DDVRTERGSDVIIMLVGN 113
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 43.7 bits (102), Expect = 2e-07
Identities = 30/70 (42%), Positives = 48/70 (68%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ DTAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +++S
Sbjct: 47 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS 106
Query: 74 ANVEKMLLGN 83
+N+ ML+GN
Sbjct: 107 SNMVIMLIGN 116
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 42.7 bits (99), Expect = 4e-07
Identities = 31/78 (39%), Positives = 42/78 (53%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L DTAGQER+ ++ YYRGA ++VYDITNE+SF KNW+
Sbjct: 42 AFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV 101
Query: 66 RNIEENASANVEKMLLGN 83
+ ++ AS N+ L GN
Sbjct: 102 KELQRQASPNIVIALSGN 119
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 38.1 bits (87), Expect = 3e-05
Identities = 13/70 (18%), Positives = 27/70 (38%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ + DTAGQE + + Y ++ + + + SF+N+K +
Sbjct: 46 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105
Query: 74 ANVEKMLLGN 83
+L+G
Sbjct: 106 PKTPFLLVGT 115
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 37.7 bits (86), Expect = 3e-05
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
L +H DTAGQERF ++ YYR A ++VYD+T +SF ++W+
Sbjct: 39 AFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWV 98
Query: 66 RNIEENASANVEKMLLGN 83
+ + E AS ++ L+GN
Sbjct: 99 KELHEQASKDIIIALVGN 116
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 36.9 bits (84), Expect = 7e-05
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNI-EENA 72
N N D GQ++ R + YY G G++ V D + D + + I +
Sbjct: 51 VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE 110
Query: 73 SANVEKMLLGN 83
+ ++ N
Sbjct: 111 MRDAIILIFAN 121
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.4 bits (80), Expect = 3e-04
Identities = 13/70 (18%), Positives = 28/70 (40%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
++ DTAGQE + + Y ++ + + + SF+N++ +
Sbjct: 48 VDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC 107
Query: 74 ANVEKMLLGN 83
N +L+G
Sbjct: 108 PNTPIILVGT 117
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 33.4 bits (75), Expect = 0.001
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
DTAG ERFR + YYRG+ ++VYDIT E++F +KNW+R + ++
Sbjct: 48 YQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP 107
Query: 74 ANVEKMLLGN 83
++ + GN
Sbjct: 108 PSIVVAIAGN 117
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 33.0 bits (74), Expect = 0.001
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
H + DTAGQERFR++ T +YRG+ +L + + + +SF N+ NW + A
Sbjct: 50 VDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYAD 109
Query: 74 AN 75
Sbjct: 110 VK 111
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 32.3 bits (72), Expect = 0.003
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
++ DTAGQE + + Y R G + V+ I N KSF++I + I+
Sbjct: 46 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD 105
Query: 74 A-NVEKMLLGN 83
+ +V +L+GN
Sbjct: 106 SDDVPMVLVGN 116
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.4 bits (67), Expect = 0.016
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-KNWIRNIEENA 72
N D GQ++ R + Y++ G++ V D + + + + +R + E+
Sbjct: 39 VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 98
Query: 73 SANVEKMLLGN 83
+ ++ N
Sbjct: 99 LRDAVLLVFAN 109
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 0.040
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 14 CFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENAS 73
+ + DTAGQE F IT AYYRGA +LV+ T+ +SF+ I +W +
Sbjct: 46 VNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG 105
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.9 bits (63), Expect = 0.047
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 6 CTLQIFRGCFQHNFHINYRDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWI 65
+ + DTAGQERF+++ A+YRGA +LVYD+TN SF+NIK+W
Sbjct: 39 FLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR 98
Query: 66 RNIEENASAN 75
+A+ N
Sbjct: 99 DEFLVHANVN 108
>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain
{Porphyromonas gingivalis [TaxId: 837]}
Length = 350
Score = 25.9 bits (56), Expect = 0.58
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 51 DITNEKSFDNIKNWIRNIEENASANVEKMLL 81
DI + + + I+ +++ E ++ +LL
Sbjct: 45 DIASPVTANAIQQFVKQEYEKEGNDLTYVLL 75
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 23.1 bits (48), Expect = 5.7
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 14 CFQHNFHINYRDTAGQERF-RTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA 72
I DTAGQERF +++ YYR ++ VYD+TN SF ++ WI +++
Sbjct: 46 IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 105
Query: 73 SANVEKMLL 81
AN +L
Sbjct: 106 LANDIPRIL 114
>d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase
ComB {Clostridium acetobutylicum [TaxId: 1488]}
Length = 235
Score = 22.9 bits (49), Expect = 6.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 34 TITTAYYRGAMGIMLVYDI 52
ITTA G ++ V +
Sbjct: 33 VITTALNNGCKRVVPVLTV 51
>d1d4m1_ b.121.4.1 (1:) Human enterovirus B coat proteins {Human
coxsackievirus A9 [TaxId: 12067]}
Length = 284
Score = 22.9 bits (49), Expect = 7.5
Identities = 8/39 (20%), Positives = 12/39 (30%)
Query: 34 TITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEENA 72
T+ R A M Y T+ W N ++
Sbjct: 63 TVENFLGRSACVYMEEYKTTDNDVNKKFVAWPINTKQMV 101
>d3eipa_ d.26.2.1 (A:) Colicin E3 immunity protein {Escherichia
coli [TaxId: 562]}
Length = 84
Score = 22.1 bits (47), Expect = 8.4
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 46 IMLVYDITNEKSFDNIKNWIRNIEENASANVE 77
+ D N FD I W+ ++ + ++
Sbjct: 36 GVPFKDNVNNGCFDVIAEWVPLLQPYFNHQID 67
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Thermus thermophilus [TaxId:
274]}
Length = 204
Score = 22.2 bits (47), Expect = 9.4
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 11 FRGCFQHNFHINYRDTAGQERF--RTITTAYYRGAMGIMLVYD 51
H ++ D G + IT A G +LV
Sbjct: 59 HVEYETAKRHYSHVDCPGHADYIKNMITGA--AQMDGAILVVS 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.414
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,005
Number of extensions: 11580
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 35
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)