BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16651
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 8 FCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYF 58
F + H N + + + + +CDVT+ EG+ AH+ VL+ACSSYF
Sbjct: 12 FAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYF 62
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of
Human Bach1
Length = 124
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 8 FCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYF 58
F + H N + + + + +CDVT+ EG+ AH+ VL+ACSSYF
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYF 55
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 15 HQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYF 58
H N + + + + +CDVTL E K AH+ VL+ACS YF
Sbjct: 15 HCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYF 58
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 32 MCDVTLATEGKHILAHKIVLSACSSYFQVAY 62
+CD T +G H AHK VL+ACS YF++ +
Sbjct: 27 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 57
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 32 MCDVTLATEGKHILAHKIVLSACSSYFQVAY 62
+CD T +G H AHK VL+ACS YF++ +
Sbjct: 25 LCDCTFVVDGVHFKAHKAVLAACSEYFKMLF 55
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 14 NHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQ 59
+H + ++ + +CDV + EG+ H+ VL+ACS YF+
Sbjct: 17 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK 62
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 14 NHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQ 59
+H + ++ + +CDV + EG+ H+ VL+ACS YF+
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK 52
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
FORM I
Length = 124
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 33 CDVTLATEGKHILAHKIVLSACSSYF 58
CDVT+ E + AHK +LSA S+YF
Sbjct: 34 CDVTVIVEDRKFRAHKNILSASSTYF 59
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 33.5 bits (75), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 33 CDVTLATEGKHILAHKIVLSACSSYF 58
CDVT+ E + AHK +LSA S+YF
Sbjct: 32 CDVTVIVEDRKFRAHKNILSASSTYF 57
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 33 CDVTLATEGKHILAHKIVLSACSSYFQ 59
CDV++ +G AH+ VL+A SSYF+
Sbjct: 34 CDVSVVVKGHAFKAHRAVLAASSSYFR 60
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 9 CLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYF 58
C+++ H + + + L + + DV + + AHK VL ACS F
Sbjct: 9 CIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 58
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 31.6 bits (70), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 10 LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHIN 65
L+ +H + + + + T+CDV + + + AH+ VL+ S F++ +H N
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN 61
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 10 LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHIN 65
L+ +H + + + + T+CDV + + + AH+ VL+ S F++ +H N
Sbjct: 5 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN 60
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 27/119 (22%)
Query: 28 RSETMCDVTL---ATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYT 84
R CD+TL G+ AH+ VL+A + YF +L Q +
Sbjct: 46 RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF---------------TPLLSGQFSES 90
Query: 85 SLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRF 143
+S P P + + +I+++Y G + VS + +L+ RF
Sbjct: 91 RSGRVEMRKWSSEPGPEPDTV---------EAVIEYMYTGRIRVSTGSVHEVLELADRF 140
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 27/119 (22%)
Query: 28 RSETMCDVTL---ATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYT 84
R CD+TL G+ AH+ VL+A + YF +L Q +
Sbjct: 28 RQGLFCDITLCFGGAGGREFRAHRSVLAAATEYF---------------TPLLSGQFSES 72
Query: 85 SLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRF 143
+S P P + + +I++ Y G + VS + +L+ RF
Sbjct: 73 RSGRVEXRKWSSEPGPEPDTV---------EAVIEYXYTGRIRVSTGSVHEVLELADRF 122
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
A Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In
Complex With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 10 LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYF 58
+++ H + + + L + + DV + + AHK VL ACS F
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLF 55
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The
Krueppel Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 33 CDVTLATEGKHILAHKIVLSACSSYFQVAY 62
CD TL G AH VL+ CS +FQ Y
Sbjct: 25 CDATLDVGGLVFKAHWSVLACCSHFFQSLY 54
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 33 CDVTLATEGKHILAHKIVLSACSSYFQVAY 62
CD TL G AH VL+ CS +FQ Y
Sbjct: 26 CDATLDVGGLVFKAHWSVLACCSHFFQRIY 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.331 0.142 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,374,420
Number of Sequences: 62578
Number of extensions: 152009
Number of successful extensions: 326
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 310
Number of HSP's gapped (non-prelim): 20
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.7 bits)