Query psy16651
Match_columns 153
No_of_seqs 165 out of 1110
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 18:32:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 99.9 2.6E-24 5.6E-29 189.7 7.8 109 7-145 11-119 (571)
2 PHA02713 hypothetical protein; 99.9 5E-24 1.1E-28 187.4 8.6 104 11-145 4-108 (557)
3 PHA02790 Kelch-like protein; P 99.9 3E-22 6.4E-27 173.2 6.5 93 21-145 11-105 (480)
4 PF00651 BTB: BTB/POZ domain; 99.8 4.7E-20 1E-24 128.6 7.0 93 23-145 1-96 (111)
5 PHA03098 kelch-like protein; P 99.8 4.2E-19 9.1E-24 154.4 6.4 83 29-145 6-90 (534)
6 smart00225 BTB Broad-Complex, 99.7 3E-17 6.5E-22 108.4 6.8 82 34-145 1-82 (90)
7 KOG4350|consensus 99.7 5.2E-17 1.1E-21 136.6 5.4 99 16-144 28-129 (620)
8 KOG2075|consensus 99.4 2.1E-13 4.6E-18 116.4 6.3 104 10-143 92-200 (521)
9 KOG4591|consensus 99.4 6.2E-13 1.4E-17 103.3 4.4 100 13-145 47-151 (280)
10 KOG4682|consensus 99.0 4.2E-10 9.1E-15 94.9 4.7 92 23-145 60-155 (488)
11 KOG0783|consensus 98.6 7.2E-08 1.6E-12 87.6 7.0 91 17-126 539-634 (1267)
12 KOG0783|consensus 98.3 4.1E-07 8.8E-12 82.8 2.1 82 31-142 709-797 (1267)
13 KOG2838|consensus 98.1 4.6E-06 1E-10 68.0 4.9 95 15-141 113-214 (401)
14 KOG0511|consensus 97.7 2E-05 4.4E-10 66.7 2.0 78 42-146 301-378 (516)
15 KOG3473|consensus 97.4 0.0005 1.1E-08 47.9 5.3 81 35-144 19-111 (112)
16 smart00512 Skp1 Found in Skp1 97.3 0.00043 9.3E-09 48.2 4.9 81 35-145 4-104 (104)
17 KOG2838|consensus 97.3 0.00028 6E-09 57.8 4.1 87 19-129 222-329 (401)
18 PF02214 BTB_2: BTB/POZ domain 97.0 0.0014 2.9E-08 44.5 4.9 84 35-146 1-87 (94)
19 KOG0511|consensus 96.7 0.00037 7.9E-09 59.2 -0.1 92 21-144 135-230 (516)
20 PF03931 Skp1_POZ: Skp1 family 96.4 0.016 3.4E-07 36.7 6.1 56 35-123 3-59 (62)
21 KOG2716|consensus 94.4 0.095 2.1E-06 41.9 5.3 81 35-144 7-89 (230)
22 KOG1987|consensus 91.6 0.055 1.2E-06 43.8 0.1 56 41-126 109-164 (297)
23 KOG2714|consensus 91.6 0.58 1.3E-05 40.6 6.2 82 35-145 13-97 (465)
24 PF11822 DUF3342: Domain of un 91.5 0.13 2.8E-06 43.0 2.2 76 42-146 14-90 (317)
25 KOG1724|consensus 90.2 0.66 1.4E-05 35.2 4.8 44 102-145 44-112 (162)
26 KOG1665|consensus 89.1 1.1 2.4E-05 36.1 5.4 43 103-145 53-96 (302)
27 KOG3840|consensus 76.9 7.6 0.00016 32.8 5.7 84 34-144 97-183 (438)
28 KOG2715|consensus 60.3 19 0.0004 27.9 4.4 85 35-145 23-107 (210)
29 COG5201 SKP1 SCF ubiquitin lig 51.5 20 0.00043 26.5 3.1 23 102-124 39-61 (158)
30 KOG3863|consensus 44.0 2.9 6.2E-05 37.9 -2.6 34 22-60 4-37 (604)
31 PF09593 Pathogen_betaC1: Beta 42.9 35 0.00075 24.5 3.3 21 40-60 20-40 (117)
32 PRK06978 nicotinate-nucleotide 33.0 32 0.0007 28.5 2.1 54 99-153 224-277 (294)
33 KOG3342|consensus 29.9 29 0.00064 26.3 1.2 17 35-51 84-101 (180)
34 PRK06559 nicotinate-nucleotide 28.6 44 0.00094 27.7 2.1 54 99-153 216-269 (290)
35 PRK09016 quinolinate phosphori 28.0 46 0.001 27.6 2.2 54 99-153 227-280 (296)
36 PF04343 DUF488: Protein of un 27.8 68 0.0015 22.4 2.8 19 35-53 101-120 (122)
37 TIGR01334 modD putative molybd 27.6 51 0.0011 27.1 2.3 55 99-153 207-263 (277)
38 PRK06543 nicotinate-nucleotide 26.0 53 0.0011 27.1 2.2 54 99-153 212-265 (281)
39 PF12926 MOZART2: Mitotic-spin 25.8 59 0.0013 22.2 2.0 29 108-139 40-68 (88)
40 PRK05848 nicotinate-nucleotide 21.4 89 0.0019 25.5 2.6 54 99-153 201-257 (273)
41 PF07632 DUF1593: Protein of u 20.5 54 0.0012 26.8 1.2 26 103-128 2-30 (260)
42 PF06404 PSK: Phytosulfokine p 20.4 32 0.0007 23.0 -0.1 14 112-125 65-78 (81)
43 PRK06106 nicotinate-nucleotide 20.1 80 0.0017 26.0 2.1 54 99-153 213-266 (281)
No 1
>KOG4441|consensus
Probab=99.90 E-value=2.6e-24 Score=189.69 Aligned_cols=109 Identities=26% Similarity=0.462 Sum_probs=103.6
Q ss_pred eeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhh
Q psy16651 7 QFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSL 86 (153)
Q Consensus 7 ~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~ 86 (153)
...+..+.|...+++.++.+|+.+.+|||++.+++++|+|||+||||+|+||++||+.+++|
T Consensus 11 ~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e------------------ 72 (571)
T KOG4441|consen 11 TSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE------------------ 72 (571)
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccc------------------
Confidence 34567789999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 87 CLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
..+.+|.+.++++++++.+++|+|||++.|+.+||++|+++|++||+
T Consensus 73 ------------~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi 119 (571)
T KOG4441|consen 73 ------------SKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQI 119 (571)
T ss_pred ------------ccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhh
Confidence 77889999999999999999999999999999999999999999984
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.90 E-value=5e-24 Score=187.36 Aligned_cols=104 Identities=23% Similarity=0.338 Sum_probs=96.3
Q ss_pred EeCCChHHHHHHHHHHHhcCCcccEEEEeC-CeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy16651 11 RWNNHQPNFIAVFSSLLRSETMCDVTLATE-GKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLT 89 (153)
Q Consensus 11 ~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~-~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (153)
....|+..+++.|+++|+++.+|||+|.++ |++|+|||+||||+|+||++||+.+|+|
T Consensus 4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e--------------------- 62 (557)
T PHA02713 4 DDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMII--------------------- 62 (557)
T ss_pred chhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchh---------------------
Confidence 456899999999999999999999999997 8999999999999999999999999998
Q ss_pred cccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 90 AWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 90 ~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
+..+.+|+|+++++++|+.+|+|+|||+ ++.+|++++|.+|++||+
T Consensus 63 --------~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi 108 (557)
T PHA02713 63 --------RDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLI 108 (557)
T ss_pred --------hccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCH
Confidence 2346789999999999999999999997 689999999999999985
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=3e-22 Score=173.22 Aligned_cols=93 Identities=17% Similarity=0.283 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCC
Q psy16651 21 AVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCK 100 (153)
Q Consensus 21 ~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (153)
+++-+++.++.+|||++.+| ++|+|||+|||++|+||++||+++|+| +.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~E------------------------------s~ 59 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTK------------------------------NK 59 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCccc------------------------------cc
Confidence 56678999999999987655 589999999999999999999999998 22
Q ss_pred CCeEEe--CCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 101 HPIVIL--KDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 101 ~~~i~l--~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
. .|.+ .++++++|+.+|+|+|||++.|+.+||+++|.||++||+
T Consensus 60 ~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi 105 (480)
T PHA02790 60 D-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSV 105 (480)
T ss_pred c-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhCh
Confidence 2 3443 499999999999999999999999999999999999985
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.81 E-value=4.7e-20 Score=128.56 Aligned_cols=93 Identities=27% Similarity=0.500 Sum_probs=79.8
Q ss_pred HHHHHhcCCcccEEEEeC-CeEEecchhhhhccCHHhHhhhhhh-hhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCC
Q psy16651 23 FSSLLRSETMCDVTLATE-GKHILAHKIVLSACSSYFQVAYHIN-ICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCK 100 (153)
Q Consensus 23 l~~l~~~~~~~DV~l~v~-~~~~~aHr~vLaa~S~yF~~mf~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (153)
|+++++++.+||++|.++ ++.|+|||.||+++|+||+.||..+ +.| .+
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~------------------------------~~ 50 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKE------------------------------ST 50 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTT------------------------------SS
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccc------------------------------cc
Confidence 578999999999999999 8999999999999999999976554 222 33
Q ss_pred CCeEEeCCCCHHHHHHHhchHhCCccccC-CCcHHHHHHHhccCCc
Q psy16651 101 HPIVILKDVQFKDLKTLIDFIYFGEVNVS-QEHLPSLLKPRVRFPP 145 (153)
Q Consensus 101 ~~~i~l~~v~~~~f~~vl~fiYtg~l~i~-~~nv~~ll~aA~~lq~ 145 (153)
..++.++++++++|..+++|+|+|++.++ .+++.+++.+|+.|++
T Consensus 51 ~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~ 96 (111)
T PF00651_consen 51 VPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQI 96 (111)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTB
T ss_pred ccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCc
Confidence 34788999999999999999999999998 9999999999999975
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.77 E-value=4.2e-19 Score=154.36 Aligned_cols=83 Identities=24% Similarity=0.469 Sum_probs=76.7
Q ss_pred cCCcccEEEEe--CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEe
Q psy16651 29 SETMCDVTLAT--EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVIL 106 (153)
Q Consensus 29 ~~~~~DV~l~v--~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 106 (153)
++.+|||+|.+ +|++|+|||.|||++|+||++||..+|+ +..|++
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---------------------------------~~~i~l 52 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---------------------------------ENEINL 52 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---------------------------------CceEEe
Confidence 78999999998 9999999999999999999998766433 467899
Q ss_pred CCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 107 KDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 107 ~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
++ ++++|+.+|+|+|||++.++.+|+.+++.+|++||+
T Consensus 53 ~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~ 90 (534)
T PHA03098 53 NI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLII 90 (534)
T ss_pred cC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCc
Confidence 99 999999999999999999999999999999999985
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.71 E-value=3e-17 Score=108.38 Aligned_cols=82 Identities=35% Similarity=0.612 Sum_probs=74.1
Q ss_pred cEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 34 DVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 34 DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
||++.++|+.|++||.+|+++|+||+.||..+..| .....+.++++++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~------------------------------~~~~~i~l~~~~~~~ 50 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKE------------------------------SKKSEIYLDDVSPED 50 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCcc------------------------------CCCCEEEecCCCHHH
Confidence 78999999999999999999999999977654443 256789999999999
Q ss_pred HHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
|+.+++|+|+|++.++..++.+++.+|++|++
T Consensus 51 f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~ 82 (90)
T smart00225 51 FRALLEFLYTGKLDLPEENVEELLELADYLQI 82 (90)
T ss_pred HHHHHHeecCceeecCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999975
No 7
>KOG4350|consensus
Probab=99.67 E-value=5.2e-17 Score=136.61 Aligned_cols=99 Identities=27% Similarity=0.490 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccc
Q psy16651 16 QPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFS 95 (153)
Q Consensus 16 ~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (153)
..++.+.+.+++.+.+++||+|++++++|+|||+|||++|+|||+|+.++|.|
T Consensus 28 ~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~E--------------------------- 80 (620)
T KOG4350|consen 28 SNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQE--------------------------- 80 (620)
T ss_pred ccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhh---------------------------
Confidence 34567788899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCC---CcHHHHHHHhccCC
Q psy16651 96 INPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQ---EHLPSLLKPRVRFP 144 (153)
Q Consensus 96 ~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~---~nv~~ll~aA~~lq 144 (153)
..+..|.+.+-+.++|+.+|+|||||++.+.. +-..+.|.+|+.++
T Consensus 81 ---s~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Yg 129 (620)
T KOG4350|consen 81 ---SHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYG 129 (620)
T ss_pred ---hhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcC
Confidence 55778889999999999999999999998754 34577888888774
No 8
>KOG2075|consensus
Probab=99.42 E-value=2.1e-13 Score=116.41 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=92.8
Q ss_pred EEeCCChHHHHHHHHHHHhcCCcccEEEEeCC-----eEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhh
Q psy16651 10 LRWNNHQPNFIAVFSSLLRSETMCDVTLATEG-----KHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYT 84 (153)
Q Consensus 10 ~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~-----~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~ 84 (153)
..|......+....-.+++++..+||.+++++ +.++|||.|||..|..|.+||++++.|
T Consensus 92 ~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~---------------- 155 (521)
T KOG2075|consen 92 PNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAE---------------- 155 (521)
T ss_pred cccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccc----------------
Confidence 34555666777888889999999999999963 469999999999999999999998887
Q ss_pred hhhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccC
Q psy16651 85 SLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRF 143 (153)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~l 143 (153)
....+|.+|++.|.+|..+|+|+|++.+.+..+|+..+|.+|++|
T Consensus 156 --------------~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY 200 (521)
T KOG2075|consen 156 --------------DASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKY 200 (521)
T ss_pred --------------ccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHh
Confidence 356799999999999999999999999999999999999999877
No 9
>KOG4591|consensus
Probab=99.36 E-value=6.2e-13 Score=103.32 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=82.9
Q ss_pred CCChHHHHHHHHHHHhcCCcccEEEEeC---CeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy16651 13 NNHQPNFIAVFSSLLRSETMCDVTLATE---GKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLT 89 (153)
Q Consensus 13 ~~~~~~~l~~l~~l~~~~~~~DV~l~v~---~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (153)
..+++.++.-...+++..+|+|++|.++ ++.++|||.||||||.++.-
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wkf----------------------------- 97 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWKF----------------------------- 97 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhhh-----------------------------
Confidence 4677888888899999999999999997 57799999999999998853
Q ss_pred cccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCc--HHHHHHHhccCCc
Q psy16651 90 AWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEH--LPSLLKPRVRFPP 145 (153)
Q Consensus 90 ~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~n--v~~ll~aA~~lq~ 145 (153)
-.++..+..+..+.++++++|...++|+||++++...++ +.++.++|+.||.
T Consensus 98 ----aN~~dekse~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqL 151 (280)
T KOG4591|consen 98 ----ANGGDEKSEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQL 151 (280)
T ss_pred ----ccCCCcchhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHH
Confidence 112233445677899999999999999999999987766 4779999988764
No 10
>KOG4682|consensus
Probab=98.99 E-value=4.2e-10 Score=94.91 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=81.3
Q ss_pred HHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCC
Q psy16651 23 FSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHP 102 (153)
Q Consensus 23 l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (153)
++.++.++.-+||++.+-|++++.||..|.. |+||..||.+-.+| +...
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~e------------------------------s~~~ 108 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWKE------------------------------SSMN 108 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccCh------------------------------hhCc
Confidence 4678889999999999999999999999987 99999999887776 4444
Q ss_pred eEE--e--CCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 103 IVI--L--KDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 103 ~i~--l--~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.|. | |+|+.++|..++.-+|.++++|+.+.+..++.+|.+||.
T Consensus 109 iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lql 155 (488)
T KOG4682|consen 109 IIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQL 155 (488)
T ss_pred eEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHH
Confidence 444 4 579999999999999999999999999999999999864
No 11
>KOG0783|consensus
Probab=98.63 E-value=7.2e-08 Score=87.56 Aligned_cols=91 Identities=24% Similarity=0.345 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcC----CcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccc
Q psy16651 17 PNFIAVFSSLLRSE----TMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWM 92 (153)
Q Consensus 17 ~~~l~~l~~l~~~~----~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (153)
+++-..+..+..+. .+.||+|.||++.|+|||.||+++|++|+.+|...-. +|.-- -
T Consensus 539 s~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~----------------~s~~~---d 599 (1267)
T KOG0783|consen 539 SNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKK----------------SSVSN---D 599 (1267)
T ss_pred ccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhcc----------------ccccc---e
Confidence 34556677776543 5679999999999999999999999999996643211 00000 0
Q ss_pred ccccC-CCCCCeEEeCCCCHHHHHHHhchHhCCcc
Q psy16651 93 LFSIN-PCKHPIVILKDVQFKDLKTLIDFIYFGEV 126 (153)
Q Consensus 93 ~~~~~-~~~~~~i~l~~v~~~~f~~vl~fiYtg~l 126 (153)
+.... ......+.+.+++|..|+.+|.|+||+..
T Consensus 600 IY~~~~~~~~~~~~ve~i~p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 600 IYIEEITQSHSTIRVEDIPPLMFEILLHYIYTDTL 634 (1267)
T ss_pred eeeecccccCceeeeccCCHHHHHHHHHHHhcccc
Confidence 11111 12233556789999999999999999854
No 12
>KOG0783|consensus
Probab=98.25 E-value=4.1e-07 Score=82.81 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=55.7
Q ss_pred CcccEEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCC
Q psy16651 31 TMCDVTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDV 109 (153)
Q Consensus 31 ~~~DV~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v 109 (153)
..-|+.+.+ +|+.++||+++|++|++||..||..-+.| ...-.+....+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E------------------------------~sS~t~~~~p~ 758 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWME------------------------------SSSITVNLSPL 758 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhh------------------------------hccceeecCcc
Confidence 334666655 77889999999999999999998776665 22223334456
Q ss_pred CHHHHHHHhchHh-CCcccc-----CCCcHHHHHHHhcc
Q psy16651 110 QFKDLKTLIDFIY-FGEVNV-----SQEHLPSLLKPRVR 142 (153)
Q Consensus 110 ~~~~f~~vl~fiY-tg~l~i-----~~~nv~~ll~aA~~ 142 (153)
+.+.|+.||||+| +.+..+ ..+-+.+++..|+.
T Consensus 759 ~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDq 797 (1267)
T KOG0783|consen 759 TVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQ 797 (1267)
T ss_pred hHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHH
Confidence 6999999999999 444422 11224455555553
No 13
>KOG2838|consensus
Probab=98.09 E-value=4.6e-06 Score=68.01 Aligned_cols=95 Identities=13% Similarity=0.211 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccccc
Q psy16651 15 HQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLF 94 (153)
Q Consensus 15 ~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (153)
....+++++...++..-..|+-+......|+|||++||+++++|+- +.
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~--------------------------------l~ 160 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKI--------------------------------LA 160 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhh--------------------------------hc
Confidence 3456677888888888888999999999999999999999999987 33
Q ss_pred ccCCCCCCe----EEeCCCCHHHHHHHhchHhCCcccc---CCCcHHHHHHHhc
Q psy16651 95 SINPCKHPI----VILKDVQFKDLKTLIDFIYFGEVNV---SQEHLPSLLKPRV 141 (153)
Q Consensus 95 ~~~~~~~~~----i~l~~v~~~~f~~vl~fiYtg~l~i---~~~nv~~ll~aA~ 141 (153)
...+.+..+ +..-+++.+.|+.+|.++|||+--. .-.|+.-|..+..
T Consensus 161 nsd~e~~ae~i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~e 214 (401)
T KOG2838|consen 161 NSDEEPEAEDICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCE 214 (401)
T ss_pred cCCCCcchhhhhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHH
Confidence 333333332 3445899999999999999997643 2334444444443
No 14
>KOG0511|consensus
Probab=97.68 E-value=2e-05 Score=66.68 Aligned_cols=78 Identities=12% Similarity=0.088 Sum_probs=65.3
Q ss_pred eEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchH
Q psy16651 42 KHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFI 121 (153)
Q Consensus 42 ~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fi 121 (153)
.++|||+++++. .+||+.||.+++.| . ......+...+|+....+.+.+++|+
T Consensus 301 ~RyP~hla~i~R-~eyfk~mf~g~f~e------------------------~--s~n~~~p~lslp~~~~~vveI~lr~l 353 (516)
T KOG0511|consen 301 DRYPAHLARILR-VEYFKSMFVGDFIE------------------------S--SVNDTRPGLSLPSLADVVVEIDLRNL 353 (516)
T ss_pred ccccHHHHHHHH-HHHHHHHhccchhh------------------------h--cCCccccccccchHHHHHHHHHHHHh
Confidence 459999999986 67999999999998 1 11344566788999999999999999
Q ss_pred hCCccccCCCcHHHHHHHhccCCcc
Q psy16651 122 YFGEVNVSQEHLPSLLKPRVRFPPG 146 (153)
Q Consensus 122 Ytg~l~i~~~nv~~ll~aA~~lq~~ 146 (153)
|+.+.++.++-+.+++-.|+.+..+
T Consensus 354 Y~d~tdi~~~~A~dvll~ad~lal~ 378 (516)
T KOG0511|consen 354 YCDQTDIIFDVASDVLLFADKLALA 378 (516)
T ss_pred hcccccchHHHHhhHHHHhhHhhhh
Confidence 9999999999988888888877544
No 15
>KOG3473|consensus
Probab=97.36 E-value=0.0005 Score=47.86 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=62.4
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|.|+. +|++|-.-|- +|.-|+-.|+|+.++..+ .+...+++.+++++..+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~----------------------------se~~~n~v~f~di~shi 69 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVF----------------------------SEAEKNEVYFRDIPSHI 69 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccc----------------------------cccccceEEeccchHHH
Confidence 55555 6677666555 455689999988775544 35677899999999999
Q ss_pred HHHHhchH-----hCCc------cccCCCcHHHHHHHhccCC
Q psy16651 114 LKTLIDFI-----YFGE------VNVSQEHLPSLLKPRVRFP 144 (153)
Q Consensus 114 f~~vl~fi-----Ytg~------l~i~~~nv~~ll~aA~~lq 144 (153)
++.+..|+ |++. .+|..+-+.+||.+|++|.
T Consensus 70 LeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 70 LEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred HHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 99999998 5554 3677788899999999884
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.34 E-value=0.00043 Score=48.23 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|+. +|..|.+.+.+.. .|..+++|+...-. .......|.+|+++..+
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~-----------------------------~~~~~~~Ipl~~v~~~~ 53 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGV-----------------------------DDENNNPIPLPNVTSKI 53 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCc-----------------------------ccCCCCCccCCCcCHHH
Confidence 55555 7888999999774 68889986533110 11122578999999999
Q ss_pred HHHHhchHhCCcc-------------------ccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGEV-------------------NVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~l-------------------~i~~~nv~~ll~aA~~lq~ 145 (153)
|+.|++|++...- .++.+.+.+|+.||++|+.
T Consensus 54 L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 54 LSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999964321 1555578999999999863
No 17
>KOG2838|consensus
Probab=97.31 E-value=0.00028 Score=57.80 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCcccEEEE--eCCe--------------EEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhh
Q psy16651 19 FIAVFSSLLRSETMCDVTLA--TEGK--------------HILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQ 82 (153)
Q Consensus 19 ~l~~l~~l~~~~~~~DV~l~--v~~~--------------~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~ 82 (153)
+-.++..++......|+++. ++|+ +++||++|.|++|++||.++...++|
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~Rkire-------------- 287 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIRE-------------- 287 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhc--------------
Confidence 33445556666555555543 2332 58999999999999999988887777
Q ss_pred hhhhhhhcccccccC---CCCCCeEEeC-CCCHHHHH-HHhchHhCCccccC
Q psy16651 83 YTSLCLTAWMLFSIN---PCKHPIVILK-DVQFKDLK-TLIDFIYFGEVNVS 129 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~i~l~-~v~~~~f~-~vl~fiYtg~l~i~ 129 (153)
.-.+. -.....|.+. .+=|..|. .++.++||+.++++
T Consensus 288 ----------geE~sdrtlr~PkRIifdE~I~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 288 ----------GEEGSDRTLRRPKRIIFDELIFPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred ----------ccccccccccCCceeechhhhcchhhhhhhhhhheecccchh
Confidence 11111 1222345554 34455554 56899999988654
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.04 E-value=0.0014 Score=44.54 Aligned_cols=84 Identities=12% Similarity=0.118 Sum_probs=58.7
Q ss_pred EEEEeCCeEEecchhhhh-ccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLATEGKHILAHKIVLS-ACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLa-a~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|.|.|||+.|..-+..|. ....+|..||..+-. .........+.+ |-+|..
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~---------------------------~~~~~~~~~~fi-DRdp~~ 52 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERS---------------------------DDYDDDDGEYFI-DRDPEL 52 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHG---------------------------GGEETTTTEEEE-SS-HHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccc---------------------------cccCCccceEEe-ccChhh
Confidence 678999999999999998 556789887765300 001233445545 679999
Q ss_pred HHHHhchHhC-CccccC-CCcHHHHHHHhccCCcc
Q psy16651 114 LKTLIDFIYF-GEVNVS-QEHLPSLLKPRVRFPPG 146 (153)
Q Consensus 114 f~~vl~fiYt-g~l~i~-~~nv~~ll~aA~~lq~~ 146 (153)
|+.||+|+-+ +.+..+ ...+..+++-|++++..
T Consensus 53 F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~ 87 (94)
T PF02214_consen 53 FEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLD 87 (94)
T ss_dssp HHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-H
T ss_pred hhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCC
Confidence 9999999999 677764 56678899999988653
No 19
>KOG0511|consensus
Probab=96.72 E-value=0.00037 Score=59.24 Aligned_cols=92 Identities=22% Similarity=0.256 Sum_probs=66.7
Q ss_pred HHHHHHHhcC---CcccEEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccccccc
Q psy16651 21 AVFSSLLRSE---TMCDVTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSI 96 (153)
Q Consensus 21 ~~l~~l~~~~---~~~DV~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (153)
..++..+++. ...|+++.. .|+.|-|||..|+++|++|.. .+..
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~--------------------------------k~v~ 182 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFP--------------------------------KDVM 182 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCc--------------------------------hhhh
Confidence 3444444443 335888877 667788999999999999876 2222
Q ss_pred CCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCC
Q psy16651 97 NPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFP 144 (153)
Q Consensus 97 ~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq 144 (153)
-.....+|+-..+-+..|..+++|+|-..-.+..+.-.+|+.+..+|+
T Consensus 183 ~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF~ 230 (516)
T KOG0511|consen 183 FYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKFS 230 (516)
T ss_pred hccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhcc
Confidence 234556666677889999999999998765566666778888877775
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.42 E-value=0.016 Score=36.74 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=41.2
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|+. +|+.|.+.+.+.. .|..+++|+.. .......|.+++++..+
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~--------------------------------~~~~~~~Ipl~~v~~~~ 49 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLED--------------------------------LGDEDEPIPLPNVSSRI 49 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHC--------------------------------TCCCGTEEEETTS-HHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhh--------------------------------hcccccccccCccCHHH
Confidence 45555 7888999988776 59999996532 11112279999999999
Q ss_pred HHHHhchHhC
Q psy16651 114 LKTLIDFIYF 123 (153)
Q Consensus 114 f~~vl~fiYt 123 (153)
++.+++|++.
T Consensus 50 L~kViewc~~ 59 (62)
T PF03931_consen 50 LKKVIEWCEH 59 (62)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999963
No 21
>KOG2716|consensus
Probab=94.42 E-value=0.095 Score=41.88 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=61.3
Q ss_pred EEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDL 114 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f 114 (153)
|.|-|||..|..++.-|.-...+|+.|+..++.= ......-.+-|=+|.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~-----------------------------~~d~s~~IFIDRSpKHF 57 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPV-----------------------------EKDESGCIFIDRSPKHF 57 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCcc-----------------------------ccCCcCcEEecCChhHH
Confidence 5688999999999999999999999976554320 01112223446789999
Q ss_pred HHHhchHhCCccccCC--CcHHHHHHHhccCC
Q psy16651 115 KTLIDFIYFGEVNVSQ--EHLPSLLKPRVRFP 144 (153)
Q Consensus 115 ~~vl~fiYtg~l~i~~--~nv~~ll~aA~~lq 144 (153)
..+|+||=.|.+.++. .++.+|+.=|++|.
T Consensus 58 ~~ILNfmRdGdv~LPe~~kel~El~~EA~fYl 89 (230)
T KOG2716|consen 58 DTILNFMRDGDVDLPESEKELKELLREAEFYL 89 (230)
T ss_pred HHHHHhhhcccccCccchHHHHHHHHHHHHhh
Confidence 9999999988887754 55779999998874
No 22
>KOG1987|consensus
Probab=91.63 E-value=0.055 Score=43.79 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.7
Q ss_pred CeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHHHHHhch
Q psy16651 41 GKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDF 120 (153)
Q Consensus 41 ~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~f 120 (153)
+..+.+|+++++++|+.|+.|+..+..+ .....+.+.+..+..++.+..|
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~------------------------------~~~~~~~~~d~~~~~~~~~~~F 158 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFK------------------------------ESSKLITLLEEKPEVLEALNGF 158 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccch------------------------------hccccccccccchhhHhhhceE
Confidence 5569999999999999999977665544 2223337788899999999999
Q ss_pred HhCCcc
Q psy16651 121 IYFGEV 126 (153)
Q Consensus 121 iYtg~l 126 (153)
.|+..-
T Consensus 159 ~~~~s~ 164 (297)
T KOG1987|consen 159 QVLPSQ 164 (297)
T ss_pred EEeccc
Confidence 998543
No 23
>KOG2714|consensus
Probab=91.58 E-value=0.58 Score=40.63 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=56.5
Q ss_pred EEEEeCCeEEecchhhhhccC--HHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHH
Q psy16651 35 VTLATEGKHILAHKIVLSACS--SYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFK 112 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S--~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~ 112 (153)
|.|.|||+.|.--+--|+... .+|-+++.+.+.- .+...-..+=|=+|+
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s-----------------------------~~~~~~~iFIDRDPd 63 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINS-----------------------------LKDESGAIFIDRDPD 63 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCcccc-----------------------------ccCCCCceEecCCch
Confidence 678999999988877776655 6777744332211 122222344467899
Q ss_pred HHHHHhchHhCCccccCCCcHHHHHH-HhccCCc
Q psy16651 113 DLKTLIDFIYFGEVNVSQEHLPSLLK-PRVRFPP 145 (153)
Q Consensus 113 ~f~~vl~fiYtg~l~i~~~nv~~ll~-aA~~lq~ 145 (153)
.|..+|+|+=||+++++.-....++. =|.+|+.
T Consensus 64 lFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl 97 (465)
T KOG2714|consen 64 LFAVILNLLRTGDLDASGVFPERLLHDEAMFYGL 97 (465)
T ss_pred HHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCc
Confidence 99999999999999996666555555 6777653
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=91.53 E-value=0.13 Score=42.95 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=60.0
Q ss_pred eEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeC-CCCHHHHHHHhch
Q psy16651 42 KHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILK-DVQFKDLKTLIDF 120 (153)
Q Consensus 42 ~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-~v~~~~f~~vl~f 120 (153)
+.|.|.+-+|-.-=.||+..+...+ +.....++|.|. ..+-.+|+=+++|
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~-----------------------------~~~~~~~~idisVhCDv~iF~WLm~y 64 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYI-----------------------------NDSQRWEEIDISVHCDVHIFEWLMRY 64 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcc-----------------------------cccCcCCCcceEEecChhHHHHHHHH
Confidence 4599999999999999999332211 123444556664 6788999999999
Q ss_pred HhCCccccCCCcHHHHHHHhccCCcc
Q psy16651 121 IYFGEVNVSQEHLPSLLKPRVRFPPG 146 (153)
Q Consensus 121 iYtg~l~i~~~nv~~ll~aA~~lq~~ 146 (153)
+....-.++.+||..+|--+++|||.
T Consensus 65 v~~~~p~l~~~NvvsIliSS~FL~M~ 90 (317)
T PF11822_consen 65 VKGEPPSLTPSNVVSILISSEFLQME 90 (317)
T ss_pred hhcCCCcCCcCcEEEeEehhhhhccH
Confidence 99988999999999999999999873
No 25
>KOG1724|consensus
Probab=90.19 E-value=0.66 Score=35.17 Aligned_cols=44 Identities=23% Similarity=0.144 Sum_probs=35.5
Q ss_pred CeEEeCCCCHHHHHHHhchHhCCcc-------------------------ccCCCcHHHHHHHhccCCc
Q psy16651 102 PIVILKDVQFKDLKTLIDFIYFGEV-------------------------NVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 102 ~~i~l~~v~~~~f~~vl~fiYtg~l-------------------------~i~~~nv~~ll~aA~~lq~ 145 (153)
..|.+++|+..+|..|++|++.-+- .++.+++.+++.||++|.+
T Consensus 44 ~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi 112 (162)
T KOG1724|consen 44 DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDI 112 (162)
T ss_pred CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence 4788999999999999999987432 2344578899999999854
No 26
>KOG1665|consensus
Probab=89.11 E-value=1.1 Score=36.11 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred eEEeCCCCHHHHHHHhchHhCCcccc-CCCcHHHHHHHhccCCc
Q psy16651 103 IVILKDVQFKDLKTLIDFIYFGEVNV-SQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 103 ~i~l~~v~~~~f~~vl~fiYtg~l~i-~~~nv~~ll~aA~~lq~ 145 (153)
...+-|=+|.-|+.+|+|+-.|++.. +.-++.++|+.|.+||.
T Consensus 53 Ga~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i 96 (302)
T KOG1665|consen 53 GAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQI 96 (302)
T ss_pred ceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhh
Confidence 34455778999999999999999865 66789999999999974
No 27
>KOG3840|consensus
Probab=76.86 E-value=7.6 Score=32.75 Aligned_cols=84 Identities=10% Similarity=0.192 Sum_probs=58.0
Q ss_pred cEEEEeCCeEEecchhhhhccC-HHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEe-CCCCH
Q psy16651 34 DVTLATEGKHILAHKIVLSACS-SYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVIL-KDVQF 111 (153)
Q Consensus 34 DV~l~v~~~~~~aHr~vLaa~S-~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~v~~ 111 (153)
-+++.+++-.|..-+.+|.+.= ..+-.||.+++ -| ..+....+.+. .+++.
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~--------------------------~f-~~pNErgEyeVAdGi~s 149 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGA--------------------------DL-VSPNERDEFEVADGMTS 149 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccc--------------------------cc-cCCCcCCceehhcchhH
Confidence 4677788888888888887632 12333332210 01 12455567776 57999
Q ss_pred HHHHHHhchHhCCccccC-CCcHHHHHHHhccCC
Q psy16651 112 KDLKTLIDFIYFGEVNVS-QEHLPSLLKPRVRFP 144 (153)
Q Consensus 112 ~~f~~vl~fiYtg~l~i~-~~nv~~ll~aA~~lq 144 (153)
.+|+.+|+|--+|.+.-. .-.|.+|-+|+++|=
T Consensus 150 ~vFRAILdYYksG~iRCP~~vSvpELrEACDYLl 183 (438)
T KOG3840|consen 150 SCFRAILDYYQSGTMRCPSSVSVSELREACDYLL 183 (438)
T ss_pred HHHHHHHHHHhcCceeCCCCCchHHHHhhcceEE
Confidence 999999999999988664 456899999999873
No 28
>KOG2715|consensus
Probab=60.34 E-value=19 Score=27.87 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=58.0
Q ss_pred EEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDL 114 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f 114 (153)
|-|.|||..|.--|--|+.-+..|-.-|...-.+ +.. ......-.+-|=+|.-|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~------------------------l~s--drDetGAYlIDRDP~~F 76 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKD------------------------LPS--DRDETGAYLIDRDPFYF 76 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccC------------------------CCC--CccccCceEeccCcchH
Confidence 6677899999999999998886665423222111 111 12222334556788999
Q ss_pred HHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 115 KTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 115 ~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.-||+|+-.|++.++.-.-..+|+-|+++..
T Consensus 77 gpvLNylRhgklvl~~l~eeGvL~EAefyn~ 107 (210)
T KOG2715|consen 77 GPVLNYLRHGKLVLNKLSEEGVLEEAEFYND 107 (210)
T ss_pred HHHHHHHhcchhhhhhhhhhccchhhhccCC
Confidence 9999999999998887444568888887754
No 29
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.45 E-value=20 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=18.7
Q ss_pred CeEEeCCCCHHHHHHHhchHhCC
Q psy16651 102 PIVILKDVQFKDLKTLIDFIYFG 124 (153)
Q Consensus 102 ~~i~l~~v~~~~f~~vl~fiYtg 124 (153)
..+..|++...+|..|++|+-..
T Consensus 39 ~p~p~pnVrSsvl~kv~ew~ehh 61 (158)
T COG5201 39 YPIPAPNVRSSVLMKVQEWMEHH 61 (158)
T ss_pred CCCcccchhHHHHHHHHHHHHhc
Confidence 34677899999999999999543
No 30
>KOG3863|consensus
Probab=43.96 E-value=2.9 Score=37.87 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=30.3
Q ss_pred HHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHh
Q psy16651 22 VFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQV 60 (153)
Q Consensus 22 ~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~ 60 (153)
.++..|.....|||++.+..+.|.+|+ ||.||..
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~ 37 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTS 37 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhh
Confidence 456778888999999999999999999 8999977
No 31
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=42.92 E-value=35 Score=24.52 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=18.4
Q ss_pred CCeEEecchhhhhccCHHhHh
Q psy16651 40 EGKHILAHKIVLSACSSYFQV 60 (153)
Q Consensus 40 ~~~~~~aHr~vLaa~S~yF~~ 60 (153)
++..+.+|--+++++||.+..
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k 40 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIK 40 (117)
T ss_pred CCCEEEEEEEEEECCChHHhe
Confidence 567899999999999998865
No 32
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.00 E-value=32 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=35.1
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
..-+.|-+.+++|+.++..+..+ .+++.+...-=..+-.++.+-+.++|+|-+|
T Consensus 224 aGaDiImLDnmspe~l~~av~~~-~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 224 HGAQSVLLDNFTLDMMREAVRVT-AGRAVLEVSGGVNFDTVRAFAETGVDRISIG 277 (294)
T ss_pred cCCCEEEECCCCHHHHHHHHHhh-cCCeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 44578889999999999999976 3344332211122333455556789998876
No 33
>KOG3342|consensus
Probab=29.85 E-value=29 Score=26.31 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=13.4
Q ss_pred EEEEeCCeEEe-cchhhh
Q psy16651 35 VTLATEGKHIL-AHKIVL 51 (153)
Q Consensus 35 V~l~v~~~~~~-aHr~vL 51 (153)
|++.++|+++| +||+|=
T Consensus 84 vVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 84 VVFKVEGREIPIVHRVIK 101 (180)
T ss_pred EEEEECCccCchhHHHHH
Confidence 45788999998 688773
No 34
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.64 E-value=44 Score=27.70 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
..-+.|-+.+++|+.++..++.+= +++.+...-=..+-.++.+-+.++|+|.+|
T Consensus 216 agaDiImLDnmspe~l~~av~~~~-~~~~leaSGGI~~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 216 AGADIIMLDNMSLEQIEQAITLIA-GRSRIECSGNIDMTTISRFRGLAIDYVSSG 269 (290)
T ss_pred cCCCEEEECCCCHHHHHHHHHHhc-CceEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 445788899999999999999764 344332221122334555667789998876
No 35
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=28.01 E-value=46 Score=27.63 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
...+.|-+.+++++.++..++.+- +++.+...-=..+=.++.+-+.++|+|..|
T Consensus 227 ~gaDiI~LDn~s~e~~~~av~~~~-~~~~ieaSGGI~~~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 227 AGADIIMLDNFTTEQMREAVKRTN-GRALLEVSGNVTLETLREFAETGVDFISVG 280 (296)
T ss_pred cCCCEEEeCCCChHHHHHHHHhhc-CCeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 345788899999999999999774 344332221122333455556788888766
No 36
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=27.79 E-value=68 Score=22.38 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.6
Q ss_pred EEEEeCC-eEEecchhhhhc
Q psy16651 35 VTLATEG-KHILAHKIVLSA 53 (153)
Q Consensus 35 V~l~v~~-~~~~aHr~vLaa 53 (153)
|+|.+.. ....|||.||+.
T Consensus 101 v~LlC~e~dp~~CHR~iLa~ 120 (122)
T PF04343_consen 101 VALLCAEKDPERCHRRILAE 120 (122)
T ss_pred eEEEEEecChhcCcHHHHHH
Confidence 8887744 457899999984
No 37
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=27.63 E-value=51 Score=27.06 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=34.7
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHh--CCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIY--FGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiY--tg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
...+.|.+.+++++.+...++.+= .+.+.+...-=..+-.++.+-+.++|+|..|
T Consensus 207 ~GaDiI~lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 207 ASPDILQLDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred cCcCEEEECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 445788899999999999999882 3333222111112223444556688988876
No 38
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.99 E-value=53 Score=27.05 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=34.8
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
...+.|-+.+++++.++..+..+= ++..+...-=..+-.++.+-+.++|+|.+|
T Consensus 212 ~gaDiImLDn~s~e~l~~av~~~~-~~~~leaSGgI~~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 212 AGVDTIMLDNFSLDDLREGVELVD-GRAIVEASGNVNLNTVGAIASTGVDVISVG 265 (281)
T ss_pred cCCCEEEECCCCHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 445788899999999999999763 333221111122333455556789999876
No 39
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.81 E-value=59 Score=22.17 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhchHhCCccccCCCcHHHHHHH
Q psy16651 108 DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKP 139 (153)
Q Consensus 108 ~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~a 139 (153)
.++|++|+.+++.+ ++++.+.-+..+|+.
T Consensus 40 ~~dp~VFriildLL---~~nVsP~AI~qmLK~ 68 (88)
T PF12926_consen 40 PMDPEVFRIILDLL---RLNVSPDAIFQMLKS 68 (88)
T ss_pred CcChHHHHHHHHHH---HcCCCHHHHHHHHHH
Confidence 57899999999988 456666666666553
No 40
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.36 E-value=89 Score=25.55 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=36.4
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhC--Ccccc-CCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYF--GEVNV-SQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYt--g~l~i-~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
..-+.|-+.+++++.++..++++=. .++.+ -+.++ ..-.++.+.+.++|+|.+|
T Consensus 201 ~GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG 257 (273)
T PRK05848 201 AGADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSG 257 (273)
T ss_pred cCCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeC
Confidence 3446888999999999999997632 12222 22344 4555666677788888776
No 41
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=20.47 E-value=54 Score=26.77 Aligned_cols=26 Identities=23% Similarity=0.668 Sum_probs=19.2
Q ss_pred eEEeCCC--CHHHHHHHhchH-hCCcccc
Q psy16651 103 IVILKDV--QFKDLKTLIDFI-YFGEVNV 128 (153)
Q Consensus 103 ~i~l~~v--~~~~f~~vl~fi-Ytg~l~i 128 (153)
.+.+.|+ +|+..+.+++|+ |++++++
T Consensus 2 viV~TDi~~EpDD~~SlvR~LlYsNe~di 30 (260)
T PF07632_consen 2 VIVLTDIGNEPDDAQSLVRLLLYSNEFDI 30 (260)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTGGGSEE
T ss_pred EEEeCCCCCCCchHHHHHHHHHhccccce
Confidence 4566777 999999999998 8887754
No 42
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=20.38 E-value=32 Score=22.97 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=9.8
Q ss_pred HHHHHHhchHhCCc
Q psy16651 112 KDLKTLIDFIYFGE 125 (153)
Q Consensus 112 ~~f~~vl~fiYtg~ 125 (153)
..+..=+|||||-.
T Consensus 65 RtL~AHlDYIYTQ~ 78 (81)
T PF06404_consen 65 RTLAAHLDYIYTQH 78 (81)
T ss_pred HHHHHHhhheeccC
Confidence 34456689999853
No 43
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.08 E-value=80 Score=26.00 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=33.6
Q ss_pred CCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCccceeeecC
Q psy16651 99 CKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPPGVDFILMG 153 (153)
Q Consensus 99 ~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~~~~~~~~~ 153 (153)
..-+.|-+.+++++.++..++.+= +...+...-=..+-.++++-+.++|+|.+|
T Consensus 213 ~gaDiI~LDn~s~e~l~~av~~~~-~~~~leaSGGI~~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 213 LGVDAVLLDNMTPDTLREAVAIVA-GRAITEASGRITPETAPAIAASGVDLISVG 266 (281)
T ss_pred cCCCEEEeCCCCHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 445788899999999999999773 222221111112233444556688988776
Done!