Query psy16651
Match_columns 153
No_of_seqs 165 out of 1110
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:33:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2if5_A Zinc finger and BTB dom 100.0 2.1E-28 7.2E-33 173.3 9.1 107 9-145 2-108 (120)
2 2ihc_A Transcription regulator 99.9 3.5E-28 1.2E-32 173.7 8.7 109 5-145 2-111 (124)
3 2ppi_A Gigaxonin; BTB domain, 99.9 5.8E-28 2E-32 177.2 9.0 112 6-145 21-132 (144)
4 3ohu_A Transcription regulator 99.9 2E-27 6.8E-32 169.6 10.5 111 3-145 3-114 (125)
5 1r29_A B-cell lymphoma 6 prote 99.9 1.3E-27 4.3E-32 171.0 9.4 109 6-145 3-112 (127)
6 2z8h_A Transcription regulator 99.9 2.7E-27 9.2E-32 172.0 8.8 110 4-145 8-118 (138)
7 3ga1_A Nucleus accumbens-assoc 99.9 1E-26 3.5E-31 167.0 10.1 108 4-145 5-113 (129)
8 3b84_A Zinc finger and BTB dom 99.9 3.1E-27 1.1E-31 167.7 6.7 102 10-145 2-103 (119)
9 3fkc_A Transcriptional regulat 99.9 1.2E-26 4.1E-31 164.4 7.8 107 4-145 3-110 (116)
10 1buo_A POZ domain, protein (pr 99.9 1.7E-26 5.8E-31 164.1 7.9 105 6-145 2-106 (121)
11 2yy9_A Zinc finger and BTB dom 99.9 4.6E-26 1.6E-30 165.2 8.6 101 11-145 4-104 (135)
12 3hve_A Gigaxonin; ubiquitin, c 99.9 6.2E-26 2.1E-30 179.3 7.9 115 3-145 2-116 (256)
13 2vpk_A Myoneurin; transcriptio 99.9 8.6E-26 3E-30 159.1 7.8 99 13-145 3-103 (116)
14 2q81_A MIZ-1 protein; BTB/POZ 99.9 2.6E-26 8.8E-31 162.9 4.5 103 8-145 3-105 (119)
15 3i3n_A Kelch-like protein 11; 99.9 2.4E-25 8.3E-30 178.0 8.0 111 5-145 5-124 (279)
16 3htm_A Speckle-type POZ protei 99.9 5.1E-25 1.7E-29 163.7 7.5 107 9-145 11-117 (172)
17 2vkp_A BTB/POZ domain-containi 99.9 6.6E-25 2.3E-29 152.5 7.2 89 26-145 2-94 (109)
18 3m5b_A Zinc finger and BTB dom 99.9 1.8E-24 6.2E-29 154.2 8.5 99 6-145 6-104 (119)
19 4eoz_A Speckle-type POZ protei 99.9 9.5E-25 3.3E-29 158.2 6.9 103 13-145 6-108 (145)
20 3hqi_A Speckle-type POZ protei 99.9 5E-22 1.7E-26 160.8 7.4 101 15-145 157-257 (312)
21 4ajy_C Transcription elongatio 99.5 1.7E-14 5.8E-19 99.1 6.8 79 35-144 4-96 (97)
22 2ast_A S-phase kinase-associat 99.4 1.8E-13 6.2E-18 101.7 4.5 81 35-145 3-111 (159)
23 1fs1_B SKP1, cyclin A/CDK2-ass 98.9 7.4E-10 2.5E-14 80.7 4.5 76 35-145 4-106 (141)
24 2p1m_A SKP1-like protein 1A; F 98.8 4.9E-10 1.7E-14 83.3 0.3 77 35-145 6-110 (160)
25 1hv2_A Elongin C, ELC1; protei 98.8 7.5E-09 2.6E-13 71.2 5.7 79 35-145 6-99 (99)
26 2fnj_C Transcription elongatio 98.8 1.1E-08 3.6E-13 70.0 6.0 82 35-145 3-96 (96)
27 1vcb_B Protein (elongin C); tu 98.3 7.3E-07 2.5E-11 62.5 4.2 83 34-145 18-112 (112)
28 3v7d_A Suppressor of kinetocho 98.0 6.6E-06 2.3E-10 61.4 5.4 85 34-145 8-118 (169)
29 3drz_A BTB/POZ domain-containi 97.4 0.00049 1.7E-08 47.3 7.0 84 35-145 8-93 (107)
30 3kvt_A Potassium channel prote 95.8 0.017 5.9E-07 40.2 5.3 85 35-149 7-93 (115)
31 1s1g_A Potassium voltage-gated 94.7 0.1 3.5E-06 36.6 6.7 84 34-147 14-98 (124)
32 3drx_A BTB/POZ domain-containi 94.3 0.075 2.6E-06 40.6 5.6 89 30-145 8-99 (202)
33 1t1d_A Protein (potassium chan 94.1 0.12 4.1E-06 34.9 5.7 82 35-146 3-87 (100)
34 2nz0_B Potassium voltage-gated 93.8 0.14 4.8E-06 36.7 6.0 85 34-148 36-121 (140)
35 1nn7_A Potassium channel KV4.2 93.0 0.12 4.3E-06 35.0 4.4 84 35-148 2-86 (105)
36 2r9r_B Paddle chimera voltage 75.6 7 0.00024 33.3 6.9 83 35-146 54-138 (514)
37 1pd7_B MAD1; PAH2, SIN3, eukar 43.0 6.6 0.00023 19.9 0.4 14 131-144 3-16 (26)
38 4h63_H Mediator of RNA polymer 21.8 37 0.0013 25.4 1.6 14 112-125 186-199 (200)
No 1
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.95 E-value=2.1e-28 Score=173.33 Aligned_cols=107 Identities=21% Similarity=0.415 Sum_probs=97.6
Q ss_pred EEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q psy16651 9 CLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCL 88 (153)
Q Consensus 9 ~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~ 88 (153)
+++|++|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||.+++.|
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e-------------------- 61 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVV-------------------- 61 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC------------------------
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccc--------------------
Confidence 357899999999999999999999999999999999999999999999999999888777
Q ss_pred hcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 89 TAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 89 ~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 62 ----------~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i 108 (120)
T 2if5_A 62 ----------DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEI 108 (120)
T ss_dssp -----------CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTC
T ss_pred ----------cCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCC
Confidence 55678999999999999999999999999999999999999999976
No 2
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.95 E-value=3.5e-28 Score=173.74 Aligned_cols=109 Identities=27% Similarity=0.410 Sum_probs=99.1
Q ss_pred CceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhh
Q psy16651 5 TQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYT 84 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~ 84 (153)
.+.+.++|+.|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||.+++.|
T Consensus 2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e---------------- 65 (124)
T 2ihc_A 2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG---------------- 65 (124)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-------------------
T ss_pred CceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCC----------------
Confidence 4678999999999999999999999999999999999999999999999999999988776655
Q ss_pred hhhhhcccccccCCCCCCeEEeC-CCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 85 SLCLTAWMLFSINPCKHPIVILK-DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~l~-~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
...+.++ ++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 66 ----------------~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~ 111 (124)
T 2ihc_A 66 ----------------ELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSV 111 (124)
T ss_dssp ----------------CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTB
T ss_pred ----------------CceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCC
Confidence 3578885 89999999999999999999999999999999999965
No 3
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=177.22 Aligned_cols=112 Identities=17% Similarity=0.363 Sum_probs=99.6
Q ss_pred ceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhh
Q psy16651 6 QQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTS 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~ 85 (153)
+.+.++++.|+..+++.++++|+++.+|||+|.++|+.|+|||+|||++|+||++||.+++.|
T Consensus 21 ~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e----------------- 83 (144)
T 2ppi_A 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPK----------------- 83 (144)
T ss_dssp CCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-------------------
T ss_pred eeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCcc-----------------
Confidence 457788999999999999999999999999999999999999999999999999999887665
Q ss_pred hhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 86 LCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.+.....|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 84 -----------~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i 132 (144)
T 2ppi_A 84 -----------DDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 132 (144)
T ss_dssp --------------CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTC
T ss_pred -----------ccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 2356678999999999999999999999999999999999999999975
No 4
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.95 E-value=2e-27 Score=169.55 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=101.7
Q ss_pred CCCceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhh
Q psy16651 3 TPTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQ 82 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~ 82 (153)
++...+.+.++.|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~----------------- 65 (125)
T 3ohu_A 3 LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQ----------------- 65 (125)
T ss_dssp BSCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC-----------------
T ss_pred CCCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCC-----------------
Confidence 355678899999999999999999999999999999999999999999999999999966553
Q ss_pred hhhhhhhcccccccCCCCCCeEEeCC-CCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 83 YTSLCLTAWMLFSINPCKHPIVILKD-VQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~l~~-v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
......|.+++ +++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 66 ---------------~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i 114 (125)
T 3ohu_A 66 ---------------TKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRM 114 (125)
T ss_dssp ---------------CCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTB
T ss_pred ---------------CCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCC
Confidence 33367899998 9999999999999999999999999999999999865
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.95 E-value=1.3e-27 Score=171.02 Aligned_cols=109 Identities=17% Similarity=0.382 Sum_probs=99.8
Q ss_pred ceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhh
Q psy16651 6 QQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTS 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~ 85 (153)
..+.++|++|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||..++.|
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e----------------- 65 (127)
T 1r29_A 3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR----------------- 65 (127)
T ss_dssp --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-----------------
T ss_pred CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-----------------
Confidence 445678999999999999999999999999999999999999999999999999988765543
Q ss_pred hhhhcccccccCCCCCCeEEe-CCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 86 LCLTAWMLFSINPCKHPIVIL-KDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~l-~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
....|.+ +++++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 66 --------------~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i 112 (127)
T 1r29_A 66 --------------NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQM 112 (127)
T ss_dssp --------------TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC
T ss_pred --------------CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCC
Confidence 4568999 999999999999999999999999999999999999975
No 6
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.94 E-value=2.7e-27 Score=171.97 Aligned_cols=110 Identities=25% Similarity=0.417 Sum_probs=101.2
Q ss_pred CCceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhh
Q psy16651 4 PTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQY 83 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~ 83 (153)
++..+.++|+.|+..+++.++++|+++.+|||+|.++|+.|+|||+|||++|+||++||..++.|
T Consensus 8 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--------------- 72 (138)
T 2z8h_A 8 ESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDA--------------- 72 (138)
T ss_dssp TTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCT---------------
T ss_pred CCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCC---------------
Confidence 44678999999999999999999999999999999999999999999999999999977665443
Q ss_pred hhhhhhcccccccCCCCCCeEEeC-CCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 84 TSLCLTAWMLFSINPCKHPIVILK-DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~l~-~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
...|.++ ++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 73 -----------------~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i 118 (138)
T 2z8h_A 73 -----------------ELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSV 118 (138)
T ss_dssp -----------------TEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTC
T ss_pred -----------------CceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCC
Confidence 3578885 89999999999999999999999999999999999975
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=166.98 Aligned_cols=108 Identities=21% Similarity=0.356 Sum_probs=99.5
Q ss_pred CCceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhh
Q psy16651 4 PTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQY 83 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~ 83 (153)
..+.++++|++|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~------------------- 65 (129)
T 3ga1_A 5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN------------------- 65 (129)
T ss_dssp --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHH-------------------
T ss_pred CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcC-------------------
Confidence 3578999999999999999999999999999999999999999999999999999997644
Q ss_pred hhhhhhcccccccCCCCCCeEEeC-CCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 84 TSLCLTAWMLFSINPCKHPIVILK-DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~l~-~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
. ...+|.++ ++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 66 -------------~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i 113 (129)
T 3ga1_A 66 -------------S--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQI 113 (129)
T ss_dssp -------------C--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTB
T ss_pred -------------C--CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCC
Confidence 2 46789997 99999999999999999999999999999999999964
No 8
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=167.67 Aligned_cols=102 Identities=23% Similarity=0.338 Sum_probs=94.6
Q ss_pred EEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q psy16651 10 LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLT 89 (153)
Q Consensus 10 ~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~ 89 (153)
+.|++|+..+++.++++++++.+|||+|.++|++|+|||.|||++|+||++||..+
T Consensus 2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~------------------------ 57 (119)
T 3b84_A 2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDG------------------------ 57 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTT------------------------
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCC------------------------
Confidence 46789999999999999999999999999999999999999999999999966442
Q ss_pred cccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 90 AWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 90 ~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
. ...|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 58 --------~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i 103 (119)
T 3b84_A 58 --------S--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRV 103 (119)
T ss_dssp --------T--CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC
T ss_pred --------C--CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCc
Confidence 2 467999999999999999999999999999999999999999975
No 9
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.93 E-value=1.2e-26 Score=164.39 Aligned_cols=107 Identities=21% Similarity=0.335 Sum_probs=98.1
Q ss_pred CCceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhh
Q psy16651 4 PTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQY 83 (153)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~ 83 (153)
..+...+.+++|+..+++.++++++++.+|||++.++|+.|+|||.|||++|+||++||..
T Consensus 3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~------------------- 63 (116)
T 3fkc_A 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV------------------- 63 (116)
T ss_dssp -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTS-------------------
T ss_pred cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcC-------------------
Confidence 3466778899999999999999999999999999999999999999999999999995532
Q ss_pred hhhhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCcc-ccCCCcHHHHHHHhccCCc
Q psy16651 84 TSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEV-NVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l-~i~~~nv~~ll~aA~~lq~ 145 (153)
+ ...|.++++++++|+.+|+|+|||++ .++.+++.+++.+|++|++
T Consensus 64 -------------~---~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i 110 (116)
T 3fkc_A 64 -------------A---GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGV 110 (116)
T ss_dssp -------------C---CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTC
T ss_pred -------------C---CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCc
Confidence 2 56899999999999999999999999 7999999999999999975
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.93 E-value=1.7e-26 Score=164.15 Aligned_cols=105 Identities=19% Similarity=0.344 Sum_probs=97.0
Q ss_pred ceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhh
Q psy16651 6 QQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTS 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~ 85 (153)
+.+.+++++|+..+++.++++++++.+|||++.++|+.|+|||.|||++|+||++||..
T Consensus 2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~--------------------- 60 (121)
T 1buo_A 2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR--------------------- 60 (121)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTS---------------------
T ss_pred CceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcC---------------------
Confidence 34678899999999999999999999999999999999999999999999999996532
Q ss_pred hhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 86 LCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
....|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 61 --------------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i 106 (121)
T 1buo_A 61 --------------NSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEI 106 (121)
T ss_dssp --------------CCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTC
T ss_pred --------------CCcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCC
Confidence 2457999999999999999999999999999999999999999975
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.93 E-value=4.6e-26 Score=165.15 Aligned_cols=101 Identities=23% Similarity=0.314 Sum_probs=90.4
Q ss_pred EeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhc
Q psy16651 11 RWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTA 90 (153)
Q Consensus 11 ~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 90 (153)
.+++|...+++.++++|+++.+|||+|.++|++|+|||.|||++|+||++||..+
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~------------------------- 58 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDG------------------------- 58 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC---------------------------
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCC-------------------------
Confidence 4679999999999999999999999999999999999999999999999966442
Q ss_pred ccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 91 WMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 91 ~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
. ...|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 59 -------~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i 104 (135)
T 2yy9_A 59 -------T--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRV 104 (135)
T ss_dssp -----------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC
T ss_pred -------C--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCc
Confidence 2 457999999999999999999999999999999999999999975
No 12
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.92 E-value=6.2e-26 Score=179.31 Aligned_cols=115 Identities=16% Similarity=0.334 Sum_probs=90.8
Q ss_pred CCCceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhh
Q psy16651 3 TPTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQ 82 (153)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~ 82 (153)
+.+....+.++.|+..+++.++++++++.+|||+|.++|+.|+|||+|||++|+||++||.+++.|
T Consensus 2 s~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~-------------- 67 (256)
T 3hve_A 2 SMAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPK-------------- 67 (256)
T ss_dssp --------CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC--------------------
T ss_pred CCCCCCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCc--------------
Confidence 445567788999999999999999999999999999999999999999999999999999887663
Q ss_pred hhhhhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 83 YTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.+.....|.++++++++|+.+++|+|||++.++.+++.+++.+|++|++
T Consensus 68 --------------~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i 116 (256)
T 3hve_A 68 --------------DDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLL 116 (256)
T ss_dssp -------------------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTC
T ss_pred --------------ccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHCh
Confidence 1256678999999999999999999999999999999999999999875
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.92 E-value=8.6e-26 Score=159.10 Aligned_cols=99 Identities=21% Similarity=0.388 Sum_probs=90.9
Q ss_pred CCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccc
Q psy16651 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWM 92 (153)
Q Consensus 13 ~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (153)
++|+..+++.++++++++.+|||+|.++|+.|+|||.|||++|+||++||..
T Consensus 3 ~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~---------------------------- 54 (116)
T 2vpk_A 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS---------------------------- 54 (116)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTT----------------------------
T ss_pred hhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcC----------------------------
Confidence 5689999999999999999999999999999999999999999999996643
Q ss_pred ccccCCCCCCeEEeC--CCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 93 LFSINPCKHPIVILK--DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 93 ~~~~~~~~~~~i~l~--~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
+ ....|.++ ++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 55 ----~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i 103 (116)
T 2vpk_A 55 ----T--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKV 103 (116)
T ss_dssp ----C--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC
T ss_pred ----C--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCC
Confidence 2 34567777 99999999999999999999999999999999999976
No 14
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.92 E-value=2.6e-26 Score=162.93 Aligned_cols=103 Identities=23% Similarity=0.443 Sum_probs=93.0
Q ss_pred eEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhh
Q psy16651 8 FCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLC 87 (153)
Q Consensus 8 ~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~ 87 (153)
..+.+++|+..+++.++++|+++.+|||+|.++|+.|+|||.|||++|+||++||..
T Consensus 3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~----------------------- 59 (119)
T 2q81_A 3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD----------------------- 59 (119)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHH-----------------------
T ss_pred cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcC-----------------------
Confidence 345678999999999999999999999999999999999999999999999997643
Q ss_pred hhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 88 LTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
...+|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 60 ------------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i 105 (119)
T 2q81_A 60 ------------QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQM 105 (119)
T ss_dssp ------------CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTC
T ss_pred ------------CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCC
Confidence 1235678899999999999999999999999999999999999975
No 15
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.92 E-value=2.4e-25 Score=178.05 Aligned_cols=111 Identities=22% Similarity=0.342 Sum_probs=97.5
Q ss_pred CceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeC---CeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhh
Q psy16651 5 TQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATE---GKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQL 81 (153)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~---~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~ 81 (153)
...+.+.+++|+..+++.++++|+++.+|||+|.++ |+.|+|||+|||++|+||++||.++++|
T Consensus 5 ~~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e------------- 71 (279)
T 3i3n_A 5 MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSE------------- 71 (279)
T ss_dssp CCEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC-----------------
T ss_pred ccccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCcc-------------
Confidence 456788999999999999999999999999999998 9999999999999999999999988887
Q ss_pred hhhhhhhhcccccccCCCCCCeEEeC------CCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 82 QYTSLCLTAWMLFSINPCKHPIVILK------DVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~l~------~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.....|.++ ++++++|+.+++|+|||++.++.+++.+++.+|++|++
T Consensus 72 -----------------~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i 124 (279)
T 3i3n_A 72 -----------------SRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLL 124 (279)
T ss_dssp ---------------------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTC
T ss_pred -----------------ccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCc
Confidence 556789998 89999999999999999999999999999999999975
No 16
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.91 E-value=5.1e-25 Score=163.74 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=97.9
Q ss_pred EEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhh
Q psy16651 9 CLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCL 88 (153)
Q Consensus 9 ~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~ 88 (153)
...++.++..+.++++++++++.+|||+|.++|+.|+|||.||+++|+||++||..++.|
T Consensus 11 ~~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e-------------------- 70 (172)
T 3htm_A 11 MNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE-------------------- 70 (172)
T ss_dssp -CCSCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCG--------------------
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccc--------------------
Confidence 334556777899999999999999999999999999999999999999999999887777
Q ss_pred hcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 89 TAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 89 ~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 71 ----------~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~ 117 (172)
T 3htm_A 71 ----------SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 117 (172)
T ss_dssp ----------GGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTC
T ss_pred ----------cCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCc
Confidence 45678999999999999999999999999999999999999999975
No 17
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=152.49 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=79.1
Q ss_pred HHhcCCcccEEEEeCC----eEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCC
Q psy16651 26 LLRSETMCDVTLATEG----KHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKH 101 (153)
Q Consensus 26 l~~~~~~~DV~l~v~~----~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (153)
+++++.+|||+|.+++ +.|+|||.|||++|+||++||.+++.| +.
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e------------------------------~~- 50 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAE------------------------------VK- 50 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------------------------------------C-
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCccc------------------------------CC-
Confidence 5788999999999988 899999999999999999999888877 33
Q ss_pred CeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 102 PIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 102 ~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
..|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++|++
T Consensus 51 ~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~ 94 (109)
T 2vkp_A 51 SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIV 94 (109)
T ss_dssp CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTC
T ss_pred CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCc
Confidence 78999999999999999999999999999999999999999975
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.91 E-value=1.8e-24 Score=154.18 Aligned_cols=99 Identities=14% Similarity=0.226 Sum_probs=88.8
Q ss_pred ceeEEEeCCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhh
Q psy16651 6 QQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTS 85 (153)
Q Consensus 6 ~~~~~~~~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~ 85 (153)
.......+.+...+++.++ |.++.+|||+|.++|+.|+|||+|||++|+||++
T Consensus 6 ~p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~------------------------- 58 (119)
T 3m5b_A 6 PPIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR------------------------- 58 (119)
T ss_dssp -CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC-------------------------
T ss_pred CCCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc-------------------------
Confidence 3455566788889999996 6789999999999999999999999999999985
Q ss_pred hhhhcccccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 86 LCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
....|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++||+
T Consensus 59 --------------~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i 104 (119)
T 3m5b_A 59 --------------RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGV 104 (119)
T ss_dssp --------------CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTC
T ss_pred --------------CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCC
Confidence 2357889999999999999999999999999999999999999986
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.91 E-value=9.5e-25 Score=158.15 Aligned_cols=103 Identities=22% Similarity=0.326 Sum_probs=95.2
Q ss_pred CCChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccc
Q psy16651 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWM 92 (153)
Q Consensus 13 ~~~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 92 (153)
+-.++.+.++++++++++.+|||+|.++|+.|+|||.||+++|+||++||..++.|
T Consensus 6 ~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e------------------------ 61 (145)
T 4eoz_A 6 KVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE------------------------ 61 (145)
T ss_dssp CCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHH------------------------
T ss_pred cCChHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcC------------------------
Confidence 34567789999999999999999999999999999999999999999999998887
Q ss_pred ccccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 93 LFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 93 ~~~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
.....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 62 ------~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~ 108 (145)
T 4eoz_A 62 ------SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 108 (145)
T ss_dssp ------HHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTC
T ss_pred ------CCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCH
Confidence 33468999999999999999999999999999999999999999975
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.86 E-value=5e-22 Score=160.76 Aligned_cols=101 Identities=23% Similarity=0.337 Sum_probs=90.5
Q ss_pred ChHHHHHHHHHHHhcCCcccEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhccccc
Q psy16651 15 HQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLF 94 (153)
Q Consensus 15 ~~~~~l~~l~~l~~~~~~~DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (153)
.+..+.+++.+++.++.+|||+|.++|+.|+|||.|||++|+||++||.+++.|
T Consensus 157 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e-------------------------- 210 (312)
T 3hqi_A 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE-------------------------- 210 (312)
T ss_dssp CCCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC------------------------------
T ss_pred CCchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccc--------------------------
Confidence 345788999999999999999999999999999999999999999999888877
Q ss_pred ccCCCCCCeEEeCCCCHHHHHHHhchHhCCccccCCCcHHHHHHHhccCCc
Q psy16651 95 SINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 95 ~~~~~~~~~i~l~~v~~~~f~~vl~fiYtg~l~i~~~nv~~ll~aA~~lq~ 145 (153)
....+|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|++
T Consensus 211 ----~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~ 257 (312)
T 3hqi_A 211 ----SKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYAL 257 (312)
T ss_dssp -----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTC
T ss_pred ----cCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCH
Confidence 55679999999999999999999999999999999999999999975
No 21
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.53 E-value=1.7e-14 Score=99.12 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=65.6
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhh--hhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHI--NICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQF 111 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~ 111 (153)
|+|+. +|++|.+||.+ |++|+||++||.. ++.| .....|.+|++++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E------------------------------~~~~~I~l~~V~~ 52 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAE------------------------------NETNEVNFREIPS 52 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------------------------------------CEEECTTSCH
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccc------------------------------cCCCceECCCCCH
Confidence 56665 78999999999 9999999998866 4444 4567899999999
Q ss_pred HHHHHHhchHh-----C---Cccc---cCCCcHHHHHHHhccCC
Q psy16651 112 KDLKTLIDFIY-----F---GEVN---VSQEHLPSLLKPRVRFP 144 (153)
Q Consensus 112 ~~f~~vl~fiY-----t---g~l~---i~~~nv~~ll~aA~~lq 144 (153)
.+++.|++|+| + +++. ++.+++.+|+.||++|+
T Consensus 53 ~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 53 HVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence 99999999999 5 7787 99999999999999987
No 22
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.39 E-value=1.8e-13 Score=101.67 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=67.6
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhh-hhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHI-NICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFK 112 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~ 112 (153)
|+|.. +|+.|.+||.+ |++|+||++||.. ++.+ +.....|.+|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~-----------------------------e~~~~~Ipl~~V~~~ 52 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDD-----------------------------EGDDDPVPLPNVNAA 52 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS-----------------------------------CEECTTSCHH
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcc-----------------------------cccCCCcCCCCccHH
Confidence 67765 89999999999 8999999998866 4441 244567999999999
Q ss_pred HHHHHhchHhCCc--------------------------cccCCCcHHHHHHHhccCCc
Q psy16651 113 DLKTLIDFIYFGE--------------------------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 113 ~f~~vl~fiYtg~--------------------------l~i~~~nv~~ll~aA~~lq~ 145 (153)
+++.|++|+|++. +.++.+++.+|+.||++|++
T Consensus 53 iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~~l~eLl~AAnyL~I 111 (159)
T 2ast_A 53 ILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 111 (159)
T ss_dssp HHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 9999999999988 78899999999999999975
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.93 E-value=7.4e-10 Score=80.68 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=65.1
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.. +|+.|.+|+.+ |.+|.++++||.. . + ...|.+|+|+..+
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~--------------------------------~-~-~~~Ipl~~V~~~i 48 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLED--------------------------------L-G-MDPVPLPNVNAAI 48 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHH--------------------------------T-C-CSSEECTTCCHHH
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHh--------------------------------c-C-CCceecCCcCHHH
Confidence 67776 88999999998 8999999996633 1 1 4479999999999
Q ss_pred HHHHhchHhCCc--------------------------cccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGE--------------------------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~--------------------------l~i~~~nv~~ll~aA~~lq~ 145 (153)
++.|++|+|+.. +.++.+++.+|+.||++|+.
T Consensus 49 L~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I 106 (141)
T 1fs1_B 49 LKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDI 106 (141)
T ss_dssp HHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 999999999866 67888999999999999964
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.82 E-value=4.9e-10 Score=83.27 Aligned_cols=77 Identities=18% Similarity=0.178 Sum_probs=37.2
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.. +|+.|.+|+.+ |.+|++|++||... .....|.+|+|+..+
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~---------------------------------~~~~~Ipl~~V~~~i 51 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD---------------------------------CVDNGVPLPNVTSKI 51 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------------------------------------CCTTSCHHH
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc---------------------------------CCCCceeCCcCcHHH
Confidence 66665 78999999998 88999999976442 123468899999999
Q ss_pred HHHHhchHhCCc---------------------------cccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGE---------------------------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~---------------------------l~i~~~nv~~ll~aA~~lq~ 145 (153)
++.|++|+|+.. +.++.+++.+|+.||++|++
T Consensus 52 L~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I 110 (160)
T 2p1m_A 52 LAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNI 110 (160)
T ss_dssp HHHHHHC------------------------------------------CHHHHHHTTC
T ss_pred HHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhH
Confidence 999999999876 46888999999999999974
No 25
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.79 E-value=7.5e-09 Score=71.17 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=64.9
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.. +|+.|.+++.+ |.+|.+++.|+..++ | .....|.+|+|+..+
T Consensus 6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e------------------------------~~~~~Iplp~V~~~i 53 (99)
T 1hv2_A 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-R------------------------------ESKGRIELKQFDSHI 53 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-T------------------------------TCTTEEEETTSCHHH
T ss_pred EEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-c------------------------------cCCCceecCCcCHHH
Confidence 67766 89999999997 889999999875533 3 334579999999999
Q ss_pred HHHHhchHhCCc--------------cccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGE--------------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~--------------l~i~~~nv~~ll~aA~~lq~ 145 (153)
++.|++|+|... -.++.+.+.+|+.||++|+.
T Consensus 54 L~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 54 LEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 999999998743 25677789999999999863
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.78 E-value=1.1e-08 Score=69.98 Aligned_cols=82 Identities=11% Similarity=0.086 Sum_probs=63.3
Q ss_pred EEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.. +|+.|.++|.+ |.+|.+++.|+...-. ..+.....|.+|+|+..+
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~----------------------------~~e~~~~~Ipl~~V~~~i 53 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQ----------------------------FAENETNEVNFREIPSHV 53 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC------------------------------------CEEECSSCCHHH
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCC----------------------------cccccCCceeCCCCCHHH
Confidence 56666 89999999997 8899999998754100 012344689999999999
Q ss_pred HHHHhchHhCCc-----------cccCCCcHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGE-----------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~-----------l~i~~~nv~~ll~aA~~lq~ 145 (153)
++.|++|+|... -.++.+.+.+|+.||++|+.
T Consensus 54 L~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 54 LSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp HHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 999999998643 26788999999999999863
No 27
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.26 E-value=7.3e-07 Score=62.51 Aligned_cols=83 Identities=12% Similarity=0.098 Sum_probs=61.7
Q ss_pred cEEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHH
Q psy16651 34 DVTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFK 112 (153)
Q Consensus 34 DV~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~ 112 (153)
-|+|.. +|+.|.+++. .|..|..++.|+...-. + .+.....|.+|+|+..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~--------------------------~--~e~~~~~IplpnV~s~ 68 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQ--------------------------F--AENETNEVNFREIPSH 68 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC------------------------------------CEEECSSCCHH
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCC--------------------------c--ccccCCceeCCCCCHH
Confidence 367764 8899999999 57789999997643100 0 1233458999999999
Q ss_pred HHHHHhchHhCCc-----------cccCCCcHHHHHHHhccCCc
Q psy16651 113 DLKTLIDFIYFGE-----------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 113 ~f~~vl~fiYtg~-----------l~i~~~nv~~ll~aA~~lq~ 145 (153)
+++.|++|+|... -.++.+.+.+|+.||++|+.
T Consensus 69 iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 69 VLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 9999999997643 25677789999999999863
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.02 E-value=6.6e-06 Score=61.42 Aligned_cols=85 Identities=15% Similarity=0.123 Sum_probs=61.6
Q ss_pred cEEEEe-CCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHH
Q psy16651 34 DVTLAT-EGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFK 112 (153)
Q Consensus 34 DV~l~v-~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~ 112 (153)
-|+|+. +|+.|.+++.+ |..|..++.|+...-.| -+ .+.....|.+|+|+..
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~------------------------~~--~~~~~~~IplpnV~s~ 60 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDD------------------------DD--EDDDEIVMPVPNVRSS 60 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-------------------------------------CEEECTTCCHH
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcc------------------------cc--cccCCCceeeCCCCHH
Confidence 467765 78899999998 77899999976542111 00 0122368999999999
Q ss_pred HHHHHhchHhCCc-------------------------cccCCCcHHHHHHHhccCCc
Q psy16651 113 DLKTLIDFIYFGE-------------------------VNVSQEHLPSLLKPRVRFPP 145 (153)
Q Consensus 113 ~f~~vl~fiYtg~-------------------------l~i~~~nv~~ll~aA~~lq~ 145 (153)
+++.|++|+|... +.++.+.+.+|+.||++|++
T Consensus 61 iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdI 118 (169)
T 3v7d_A 61 VLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNI 118 (169)
T ss_dssp HHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999997543 34566778999999999964
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.42 E-value=0.00049 Score=47.34 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=61.9
Q ss_pred EEEEeCCeEEecchhhhhccC-HHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACS-SYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S-~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.|||+.|...+..|+... .+|..||..+. + . ........++-+ |-+|..
T Consensus 8 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~-~------------------------~-~~~~d~~~~~fi-DRdp~~ 60 (107)
T 3drz_A 8 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADP-D------------------------L-DSDKDETGAYLI-DRDPTY 60 (107)
T ss_dssp EEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCG-G------------------------G-GGGBCTTSCEEE-CSCHHH
T ss_pred EEEEECCEEEEECHHHHhcCCCcchhHHHhcCC-C------------------------C-CcCCCCCceEEe-cCChHH
Confidence 678999999999999999876 46777765431 0 0 011123345555 789999
Q ss_pred HHHHhchHhCCccccCCC-cHHHHHHHhccCCc
Q psy16651 114 LKTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPP 145 (153)
Q Consensus 114 f~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~ 145 (153)
|+.||+|+.+|++.++.+ ....+++-|+++++
T Consensus 61 F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l 93 (107)
T 3drz_A 61 FGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNI 93 (107)
T ss_dssp HHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCC
Confidence 999999999999988553 35779999988865
No 30
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.77 E-value=0.017 Score=40.17 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=60.5
Q ss_pred EEEEeCCeEEecchhhhhccCH-HhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSS-YFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~-yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.|||..|...+..|+.... .+..||.. ... ......++-+ |=+|..
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~----------------------------~~~-~~~~~g~~Fi-DRdp~~ 56 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEG----------------------------MLN-YDPVLNEYFF-DRHPGV 56 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTT----------------------------STT-EETTTTEEEE-CSCTTT
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcC----------------------------CCC-CCCCCCcEEE-ecChHH
Confidence 7889999999999999987533 34443321 000 0123345555 578999
Q ss_pred HHHHhchHhCCccccCCC-cHHHHHHHhccCCcccee
Q psy16651 114 LKTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPPGVDF 149 (153)
Q Consensus 114 f~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~~~~~ 149 (153)
|+.||+|+-+|++.++.+ .+..+++-|+++++.-+.
T Consensus 57 F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 57 FAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQ 93 (115)
T ss_dssp HHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHH
Confidence 999999999999988654 468899999999876543
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=94.73 E-value=0.1 Score=36.63 Aligned_cols=84 Identities=10% Similarity=0.088 Sum_probs=58.1
Q ss_pred cEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 34 DVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 34 DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
=|+|.|||..|..-+..|..... .|+.. .+ .+ .+ .......+-+ |=+|..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p~---S~L~~--~~---------------------~~-~~--~~~~~g~~Fi-DRdp~~ 63 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYPD---TLLGS--TE---------------------KE-FF--FNEDTKEYFF-DRDPEV 63 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTSTT---SSTTS--SG---------------------GG-GT--BCSSSCSEEE-CSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCCC---ceecc--cC---------------------Cc-cc--ccCCCCcEEE-cCChHH
Confidence 37889999999999999976432 22211 11 00 11 1223345555 569999
Q ss_pred HHHHhchHhCCccccCCC-cHHHHHHHhccCCccc
Q psy16651 114 LKTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPPGV 147 (153)
Q Consensus 114 f~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~~~ 147 (153)
|+.||+|+-+|++.++.+ .+..+++-|+++++.-
T Consensus 64 F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~ 98 (124)
T 1s1g_A 64 FRCVLNFYRTGKLHYPRYECISAYDDELAFYGILP 98 (124)
T ss_dssp HHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCh
Confidence 999999999999987654 4788999999997753
No 32
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=94.33 E-value=0.075 Score=40.58 Aligned_cols=89 Identities=10% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCccc-EEEEeCCeEEecchhhhhccC-HHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeC
Q psy16651 30 ETMCD-VTLATEGKHILAHKIVLSACS-SYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILK 107 (153)
Q Consensus 30 ~~~~D-V~l~v~~~~~~aHr~vLaa~S-~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 107 (153)
+...+ |.|.|||..|...+..|.... .+|..||..+. -+........++-+
T Consensus 8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~--------------------------~~~~~~De~geyFI- 60 (202)
T 3drx_A 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADP--------------------------DLDSDKDETGAYLI- 60 (202)
T ss_dssp SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCC--------------------------C----BCTTCCEEE-
T ss_pred CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCcc--------------------------ccCcccCCCccEEe-
Confidence 33444 578899999999999998764 36777654320 00001112344555
Q ss_pred CCCHHHHHHHhchHhCCccccCCC-cHHHHHHHhccCCc
Q psy16651 108 DVQFKDLKTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPP 145 (153)
Q Consensus 108 ~v~~~~f~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~ 145 (153)
|-+|..|+.||+|+-+|++.++.+ ....+++-|++|++
T Consensus 61 DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL 99 (202)
T 3drx_A 61 DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNI 99 (202)
T ss_dssp CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTC
T ss_pred cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCc
Confidence 678999999999999999988554 34678899998875
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=94.08 E-value=0.12 Score=34.92 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred EEEEeCCeEEecchhhhhccCH-HhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSS-YFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~-yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
|+|.|||..|...+..|+..-. .+.+|+... .+ -.....++-+ |=+|..
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~---------------------------~~--~~~~~~eyFi-DRdp~~ 52 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRN---------------------------RY--YDPLRNEYFF-DRNRPS 52 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHG---------------------------GG--EETTTTEEEE-CSCSTT
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccc---------------------------cc--cCCCceeEEE-cCChHH
Confidence 6789999999999999975421 222222110 00 0123445555 668999
Q ss_pred HHHHhchHhC-CccccCCC-cHHHHHHHhccCCcc
Q psy16651 114 LKTLIDFIYF-GEVNVSQE-HLPSLLKPRVRFPPG 146 (153)
Q Consensus 114 f~~vl~fiYt-g~l~i~~~-nv~~ll~aA~~lq~~ 146 (153)
|+.||+|+-+ |++.++.+ .+..+++-|+++++.
T Consensus 53 F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~ 87 (100)
T 1t1d_A 53 FDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELG 87 (100)
T ss_dssp HHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCC
Confidence 9999999999 89977543 467899999999764
No 34
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=93.84 E-value=0.14 Score=36.73 Aligned_cols=85 Identities=9% Similarity=0.110 Sum_probs=58.5
Q ss_pred cEEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHH
Q psy16651 34 DVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKD 113 (153)
Q Consensus 34 DV~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~ 113 (153)
=|+|.|||..|...+..|...-. .|+.. .+ . . .+ ......++-+ |=++..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~P~---S~L~~--~~----------~-----------~-~~--~~~~~g~yFi-DRdp~~ 85 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERYPD---TLLGS--TE----------K-----------E-FF--FNEDTKEYFF-DRDPEV 85 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTCTT---STTTS--GG----------G-----------G-GS--EETTTTEEEE-CSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcCCC---eeecc--cC----------C-----------c-cc--ccCCCCeEEE-eCCcHH
Confidence 37889999999999999976432 22221 00 0 0 11 1123445555 569999
Q ss_pred HHHHhchHhCCccccCCC-cHHHHHHHhccCCccce
Q psy16651 114 LKTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPPGVD 148 (153)
Q Consensus 114 f~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~~~~ 148 (153)
|+.||+|+-+|++.+..+ .+..+++-|++|++.-.
T Consensus 86 F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 86 FRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChH
Confidence 999999999999987653 47889999999977543
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=93.03 E-value=0.12 Score=35.04 Aligned_cols=84 Identities=12% Similarity=0.141 Sum_probs=57.1
Q ss_pred EEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDL 114 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f 114 (153)
|+|.|||..|...+..|..... .|+.. .+ . . .+ .......+-+ |=+|..|
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~--~~----------~-----------~-~~--~~~~~~~~Fi-DRdp~~F 51 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGS--SE----------R-----------D-FF--YHPETQQYFF-DRDPDIF 51 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTS--GG----------G-----------G-GG--EEGGGTEEEE-CSCTTTH
T ss_pred EEEEECCEEEEEeHHHHhcCCC---ccccc--cC----------C-----------c-cc--ccCCCCcEEE-eCCcHHH
Confidence 6889999999999999976432 22211 00 0 0 00 0122345555 5589999
Q ss_pred HHHhchHhCCccccCCC-cHHHHHHHhccCCccce
Q psy16651 115 KTLIDFIYFGEVNVSQE-HLPSLLKPRVRFPPGVD 148 (153)
Q Consensus 115 ~~vl~fiYtg~l~i~~~-nv~~ll~aA~~lq~~~~ 148 (153)
+.||+|+-+|++.++.+ .+..+++-|+++++.-.
T Consensus 52 ~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l 86 (105)
T 1nn7_A 52 RHILNFYRTGKLHYPRHECISAYDEELAFFGLIPE 86 (105)
T ss_dssp HHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHH
Confidence 99999999999987653 47889999999876543
No 36
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=75.64 E-value=7 Score=33.29 Aligned_cols=83 Identities=8% Similarity=0.033 Sum_probs=55.7
Q ss_pred EEEEeCCeEEecchhhhhccCHHhHhhhhhhhhHHHHHHHHHHHhhhhhhhhhhhcccccccCCCCCCeEEeCCCCHHHH
Q psy16651 35 VTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDL 114 (153)
Q Consensus 35 V~l~v~~~~~~aHr~vLaa~S~yF~~mf~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~v~~~~f 114 (153)
|.|.|||..|...+..|+..- ..++...... . .+ -.....++-+ |=+|..|
T Consensus 54 v~lNVgG~~f~t~~~tL~~~p---~s~l~~~~~~-----------~------------~~--~~~~~~~~f~-DR~~~~F 104 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQFP---ETLLGDPKKR-----------M------------RY--FDPLRNEYFF-DRNRPSF 104 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTST---TSTTTCHHHH-----------G------------GG--EETTTTEEEE-CSCHHHH
T ss_pred EEEEeCCEEEEecHHHHhcCC---CCcccccccC-----------C------------cc--cCCCCCCEEE-cCChHHH
Confidence 678899999999999987532 2222111000 0 00 1123456666 6799999
Q ss_pred HHHhchHhC-CccccCCC-cHHHHHHHhccCCcc
Q psy16651 115 KTLIDFIYF-GEVNVSQE-HLPSLLKPRVRFPPG 146 (153)
Q Consensus 115 ~~vl~fiYt-g~l~i~~~-nv~~ll~aA~~lq~~ 146 (153)
+.+|+|+.+ |++..+.+ .+..+++=|++++..
T Consensus 105 ~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~ 138 (514)
T 2r9r_B 105 DAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG 138 (514)
T ss_dssp HHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCccccCCcccHHHHHHHHHhcCCC
Confidence 999999999 99987554 356688888888764
No 37
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=42.98 E-value=6.6 Score=19.88 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.9
Q ss_pred CcHHHHHHHhccCC
Q psy16651 131 EHLPSLLKPRVRFP 144 (153)
Q Consensus 131 ~nv~~ll~aA~~lq 144 (153)
.|++.||+||++|.
T Consensus 3 ~nvq~LLeAAeyLE 16 (26)
T 1pd7_B 3 MNIQMLLEAADYLE 16 (26)
T ss_dssp CSTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 58899999999873
No 38
>4h63_H Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=21.82 E-value=37 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.5
Q ss_pred HHHHHHhchHhCCc
Q psy16651 112 KDLKTLIDFIYFGE 125 (153)
Q Consensus 112 ~~f~~vl~fiYtg~ 125 (153)
...+.||+|||+|+
T Consensus 186 ~~~~~vl~f~~~G~ 199 (200)
T 4h63_H 186 QMLTDILSFMKSGK 199 (200)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhcCC
Confidence 34578999999996
Done!