RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16651
(153 letters)
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 72.0 bits (177), Expect = 4e-17
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 36/136 (26%)
Query: 6 QQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHIN 65
Q + H + SS CD L +G+ I K +L+A S Y +
Sbjct: 21 QSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIR------ 74
Query: 66 ICELFIFVLVILKRQLQYTSLCLTAWMLFSINP----CKHPIVILKDVQFKDLKTLIDFI 121
+ NP + L+ + ++ ++D+I
Sbjct: 75 --------------------------TKLNYNPPKDDGSTYKIELEGISVMVMREILDYI 108
Query: 122 YFGEVNVSQEHLPSLL 137
+ G++ ++++ + ++
Sbjct: 109 FSGQIRLNEDTIQDVV 124
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 69.6 bits (171), Expect = 2e-16
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 34/135 (25%)
Query: 5 TQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHI 64
+ +++ H + + + L + + DV + + AHK VL ACS F
Sbjct: 2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY----- 56
Query: 65 NICELFIFVLVILKRQLQYTSLCLTAWMLFSINP--CKHPIVILKDVQFKDLKTLIDFIY 122
+F+ I + ++ + L+DF+Y
Sbjct: 57 ---------------------------SIFTDQLKRNLSVINLDPEINPEGFNILLDFMY 89
Query: 123 FGEVNVSQEHLPSLL 137
+N+ + ++ +++
Sbjct: 90 TSRLNLREGNIMAVM 104
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 70.0 bits (172), Expect = 2e-16
Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 31/136 (22%)
Query: 2 ATPTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVA 61
+ + F + H N + + + + +CDVT+ EG+ AH+ VL+ACSSYF
Sbjct: 6 VSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHS- 64
Query: 62 YHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFI 121
+ + + + ++V K + LI F
Sbjct: 65 ------------------------------RIVGQTDAELTVTLPEEVTVKGFEPLIQFA 94
Query: 122 YFGEVNVSQEHLPSLL 137
Y ++ +S++++ +
Sbjct: 95 YTAKLILSKDNVDEVC 110
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 69.2 bits (170), Expect = 4e-16
Identities = 27/127 (21%), Positives = 50/127 (39%), Gaps = 31/127 (24%)
Query: 11 RWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELF 70
+ H N + + + + +CDVT+ EG+ AH+ VL+ACSSYF
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHS---------- 57
Query: 71 IFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQ 130
+ + I + ++V K + LI F Y ++ +S+
Sbjct: 58 ---------------------RIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSK 96
Query: 131 EHLPSLL 137
E++ +
Sbjct: 97 ENVDEVC 103
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 70.3 bits (173), Expect = 1e-15
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 28/125 (22%)
Query: 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIF 72
H + SS CD L +G+ I K +L+A S Y
Sbjct: 12 PQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI--------RTKL-- 61
Query: 73 VLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEH 132
+ L+ + ++ ++D+I+ G++ ++++
Sbjct: 62 ----------------NYNPPKD--DGSTYKIELEGISVMVMREILDYIFSGQIRLNEDT 103
Query: 133 LPSLL 137
+ ++
Sbjct: 104 IQDVV 108
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 67.6 bits (166), Expect = 1e-15
Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 33/136 (24%)
Query: 3 TPTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAY 62
+ + H N + + + + +CDVTL E K AH+ VL+ACS YF
Sbjct: 3 LGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFW--- 59
Query: 63 HINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPC-KHPIVILKDVQFKDLKTLIDFI 121
+ + ++V + L+ F
Sbjct: 60 -----------------------------QALVGQTKNDLVVSLPEEVTARGFGPLLQFA 90
Query: 122 YFGEVNVSQEHLPSLL 137
Y ++ +S+E++ ++
Sbjct: 91 YTAKLLLSRENIREVI 106
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 67.6 bits (166), Expect = 1e-15
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 34/131 (25%)
Query: 9 CLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICE 68
+ + +H + ++ + +CDV + EG+ H+ VL+ACS YF+
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFK--------- 52
Query: 69 LFIFVLVILKRQLQYTSLCLTAWMLFSINP--CKHPIVILKDVQFKDLKTLIDFIYFGEV 126
LF+ + + + V + L L+DF Y +
Sbjct: 53 -----------------------KLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL 89
Query: 127 NVSQEHLPSLL 137
VS ++ +L
Sbjct: 90 TVSTANVGDIL 100
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 67.2 bits (165), Expect = 2e-15
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 32/125 (25%)
Query: 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIF 72
++H + + + + +CD T+ AH+ VL++ S YF
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFG------------- 49
Query: 73 VLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEH 132
++ + + V+ + L++FIY G +N+ +
Sbjct: 50 -------------------AIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWN 90
Query: 133 LPSLL 137
+ +
Sbjct: 91 VKEIH 95
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 66.0 bits (162), Expect = 9e-15
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 32/116 (27%)
Query: 23 FSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQ 82
L + D L G+ AHK +L+A S F
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA---------------------- 53
Query: 83 YTSLCLTAWMLFS-INPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLL 137
M + K V + DV+ + K ++ FIY G+ + LL
Sbjct: 54 ---------MFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLL 100
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 65.7 bits (161), Expect = 2e-14
Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 32/123 (26%)
Query: 16 QPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLV 75
+ L + D L G+ AHK +L+A S F
Sbjct: 18 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA--------------- 62
Query: 76 ILKRQLQYTSLCLTAWMLFS-INPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLP 134
M + K V + DV+ + K ++ FIY G+ +
Sbjct: 63 ----------------MFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMAD 106
Query: 135 SLL 137
LL
Sbjct: 107 DLL 109
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 64.2 bits (157), Expect = 3e-14
Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 34/125 (27%)
Query: 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIF 72
+ H + + CD TL G AH VL+ CS +FQ
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ------------- 52
Query: 73 VLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEH 132
++ V+L + L+DF Y G + ++ +
Sbjct: 53 -------------------RIYGDG--TGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGN 91
Query: 133 LPSLL 137
+L
Sbjct: 92 RDQVL 96
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 63.8 bits (156), Expect = 4e-14
Identities = 23/137 (16%), Positives = 48/137 (35%), Gaps = 34/137 (24%)
Query: 1 MATPTQQFCLRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQV 60
+ + Q + N + + + CDV++ +G AH+ VL+A SSYF+
Sbjct: 3 LGSA-QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFR- 60
Query: 61 AYHINICELFIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDF 120
LF+ + + + VQ + + ++ F
Sbjct: 61 -------------------------------DLFNNSR-SAVVELPAAVQPQSFQQILSF 88
Query: 121 IYFGEVNVSQEHLPSLL 137
Y G ++++ L+
Sbjct: 89 CYTGRLSMNVGDQDLLM 105
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 62.6 bits (153), Expect = 9e-14
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 35/124 (28%)
Query: 14 NHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFV 73
H + + + + +CD T +G H AHK VL+ACS YF+
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFK-------------- 54
Query: 74 LVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHL 133
MLF + +V L L +++F+Y ++++S E++
Sbjct: 55 ------------------MLFV---DQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93
Query: 134 PSLL 137
+L
Sbjct: 94 DDVL 97
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 61.9 bits (151), Expect = 2e-13
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 34/126 (26%)
Query: 12 WNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFI 71
+ H + + CD TL G AH VL+ CS +FQ
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQ------------ 51
Query: 72 FVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQE 131
L+ V+L + L+DF Y G + ++
Sbjct: 52 --------------------SLYGDG--SGGSVVLPAGFAEIFGLLLDFFYTGHLALTSG 89
Query: 132 HLPSLL 137
+ +L
Sbjct: 90 NRDQVL 95
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 61.4 bits (150), Expect = 2e-13
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 37/118 (31%)
Query: 25 SLLRSETMCDVTL----ATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQ 80
S+ +E M DV + + AHK VL+ SS F
Sbjct: 1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYA-------------------- 40
Query: 81 LQYTSLCLTAWMLFS-INPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLL 137
M + + K I I DV+ L+ ++Y E+++ + + + L
Sbjct: 41 -----------MFYGDLAEVKSEIHI-PDVEPAAFLILLKYMYSDEIDLEADTVLATL 86
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 61.5 bits (150), Expect = 3e-13
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 35/125 (28%)
Query: 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIF 72
+H + + + + T+CDV + + + AH+ VL+ S F+
Sbjct: 9 PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE------------- 55
Query: 73 VLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEH 132
+LF N L + K + ++++ Y + E
Sbjct: 56 -------------------ILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAED 93
Query: 133 LPSLL 137
L LL
Sbjct: 94 LDDLL 98
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 58.5 bits (142), Expect = 4e-12
Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 36/127 (28%)
Query: 13 NNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIF 72
+ + + + CDVT+ E + AHK +LSA S+YF
Sbjct: 12 IQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFH------------- 58
Query: 73 VLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGE-VNVSQE 131
LFS +V L ++ + ++++IY + V V +
Sbjct: 59 -------------------QLFS---VAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSD 96
Query: 132 HLPSLLK 138
L L+K
Sbjct: 97 LLDELIK 103
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 60.4 bits (147), Expect = 7e-12
Identities = 23/138 (16%), Positives = 44/138 (31%), Gaps = 43/138 (31%)
Query: 11 RWNNHQPNFIAVFSSLLRSETMCDVTLAT---EGKHILAHKIVLSACSSYFQVAYHINIC 67
++H + R CD+TL G+ AH+ VL+A + YF
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTP------- 63
Query: 68 ELFIFVLVILKRQLQYTSLCLTAWMLFSINP--CKHPIVILKDVQFKD------LKTLID 119
L S + V ++ + ++ +I+
Sbjct: 64 -------------------------LLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIE 98
Query: 120 FIYFGEVNVSQEHLPSLL 137
++Y G + VS + +L
Sbjct: 99 YMYTGRIRVSTGSVHEVL 116
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 57.3 bits (139), Expect = 1e-11
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 40/113 (35%)
Query: 26 LLRSE-TMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVLVILKRQLQYT 84
R +CD + + AH +VL+ S
Sbjct: 23 AARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG------------------------- 57
Query: 85 SLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHLPSLL 137
+ + + + L++F+Y V + L L
Sbjct: 58 --------------RRGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQ 96
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 58.8 bits (142), Expect = 3e-11
Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 32/124 (25%)
Query: 15 HQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICELFIFVL 74
+ L + D L G+ AHK +L+A S F
Sbjct: 157 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSA-------------- 202
Query: 75 VILKRQLQYTSLCLTAWMLFS-INPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVSQEHL 133
M + K V + DV+ + K ++ FIY G+ +
Sbjct: 203 -----------------MFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMA 245
Query: 134 PSLL 137
LL
Sbjct: 246 DDLL 249
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 7e-04
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 52/146 (35%)
Query: 41 GKHILAHKIVLSACSSY-------FQVAYHINI--C---ELFIFVLVILKRQL--QYTSL 86
GK +A L C SY F++ + +N+ C E + +L L Q+ +TS
Sbjct: 162 GKTWVA----LDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 87 CLTAW--------------MLFSINPCKHPIVILKDVQ-------FKDL--KTLI----- 118
+ L P ++ +++L +VQ F +L K L+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFK 275
Query: 119 ---DFIYFGEV-NVSQEHLPSLLKPR 140
DF+ ++S +H L P
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 36.0 bits (82), Expect = 0.003
Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 64/186 (34%)
Query: 4 PTQQFCLRWNNHQPNFIAVFSSLLRSETMC------------DVTLATEGK-------H- 43
PT L W + + + V + L ++ + L + K H
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 44 -ILAH-KIVLSACSS-----------YFQVAYHINICE------LF--IFV-LVILKRQL 81
I+ H I + S Y + +H+ E LF +F+ L++++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 82 QYTSLCLTAWMLFSINPCKHPIVILKDVQF-KD------------LKTLIDFIY-FGEVN 127
++ S TAW N + L+ ++F K + ++DF+ E
Sbjct: 508 RHDS---TAW-----NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 128 VSQEHL 133
+ ++
Sbjct: 560 ICSKYT 565
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.2 bits (65), Expect = 0.56
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 9/45 (20%)
Query: 103 IVILKDVQFKDLK-TLIDFI-YFGEVNVSQEHLPSLLKPRVRFPP 145
+ + V D K + FG N P +
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFK-------FIPDEKKSK 291
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.4 bits (63), Expect = 0.95
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 9/45 (20%)
Query: 103 IVILKDVQFKDLK-TLIDFI-YFGEVNVSQEHLPSLLKPRVRFPP 145
+ + V D K + FG N P +
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFK-------FIPDEKKSK 291
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.0 bits (62), Expect = 1.4
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 9/45 (20%)
Query: 103 IVILKDVQFKDLK-TLIDFI-YFGEVNVSQEHLPSLLKPRVRFPP 145
+ + V D K + FG N P +
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFK-------FIPDEKKSK 291
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 27.6 bits (61), Expect = 1.8
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 9/45 (20%)
Query: 103 IVILKDVQFKDLK-TLIDFI-YFGEVNVSQEHLPSLLKPRVRFPP 145
+ + V D K + FG N P +
Sbjct: 254 AIAGEGVDINDGKAIAEGLLSQFGFTNFK-------FIPDEKKSK 291
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 26.3 bits (59), Expect = 4.0
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 104 VILKDVQFKDLK-TLIDFI--YFGE 125
++ ++ F +LK TL DF+ +F E
Sbjct: 213 IVDTNISFTNLKGTLHDFLRNFFEE 237
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 25.7 bits (57), Expect = 7.7
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 104 VILKDVQFKDLK-TLIDFI--YFGE 125
V+ K+++ DLK TL FG
Sbjct: 162 VVDKNIKMSDLKGTLELVAKKLFGA 186
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.331 0.142 0.450
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,312,312
Number of extensions: 121987
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 49
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.0 bits)