RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16651
         (153 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 60.1 bits (145), Expect = 4e-13
 Identities = 19/129 (14%), Positives = 45/129 (34%), Gaps = 30/129 (23%)

Query: 10  LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICEL 69
           +++  H  + +   + L   + + DV +    +   AHK VL ACS  F           
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFY---------- 52

Query: 70  FIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVS 129
                               +     +      I +  ++  +    L+DF+Y   +N+ 
Sbjct: 53  --------------------SIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLR 92

Query: 130 QEHLPSLLK 138
           + ++ +++ 
Sbjct: 93  EGNIMAVMA 101


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 55.4 bits (133), Expect = 3e-11
 Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 35/129 (27%)

Query: 10  LRWNNHQPNFIAVFSSLLRSETMCDVTLATEGKHILAHKIVLSACSSYFQVAYHINICEL 69
           L+  +H    +   + +  + T+CDV +  + +   AH+ VL+  S  F++ +H      
Sbjct: 6   LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFH------ 59

Query: 70  FIFVLVILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDFIYFGEVNVS 129
                                               L  +  K  + ++++ Y   +   
Sbjct: 60  -----------------------------RNSQHYTLDFLSPKTFQQILEYAYTATLQAK 90

Query: 130 QEHLPSLLK 138
            E L  LL 
Sbjct: 91  AEDLDDLLY 99


>d2i09a2 d.327.1.1 (A:108-226) Phosphopentomutase DeoB
          {Streptococcus mutans [TaxId: 1309]}
          Length = 119

 Score = 25.5 bits (56), Expect = 1.7
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 49 IVLSACSSYFQVAYHINICEL 69
          I+ ++     Q+A H ++  L
Sbjct: 52 IIYTSADPVLQIAAHEDVIPL 72


>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase,
           phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 337

 Score = 24.6 bits (52), Expect = 6.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 76  ILKRQLQYTSLCLTAWMLFSINPCKHPIVILKDVQFKDLKTLIDF 120
           ILK      + C++ +    I P + P+ IL DV      T+ D+
Sbjct: 282 ILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDY 326


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,867
Number of extensions: 24671
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 7
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (22.8 bits)