Query psy16652
Match_columns 384
No_of_seqs 244 out of 2759
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 18:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 5.1E-46 1.1E-50 338.7 28.9 344 1-374 164-519 (1051)
2 KOG3513|consensus 100.0 7.1E-42 1.5E-46 311.8 31.2 348 1-377 268-620 (1051)
3 KOG4221|consensus 100.0 1.6E-35 3.5E-40 269.5 20.8 336 3-371 70-418 (1381)
4 KOG4194|consensus 100.0 3.5E-33 7.6E-38 237.9 21.6 293 69-373 500-800 (873)
5 PHA02785 IL-beta-binding prote 100.0 2E-29 4.4E-34 214.1 29.1 268 71-363 25-321 (326)
6 KOG4222|consensus 100.0 7.2E-31 1.6E-35 238.1 20.0 338 2-371 59-413 (1281)
7 KOG4221|consensus 100.0 2.4E-28 5.1E-33 223.3 26.4 284 73-383 42-340 (1381)
8 KOG4222|consensus 100.0 1.7E-29 3.6E-34 229.4 16.2 338 1-372 159-512 (1281)
9 KOG4194|consensus 99.9 1.3E-24 2.7E-29 186.1 19.7 227 25-275 571-800 (873)
10 PHA02785 IL-beta-binding prote 99.9 7.5E-25 1.6E-29 186.2 17.0 229 2-261 59-318 (326)
11 PHA02826 IL-1 receptor-like pr 99.9 2.7E-21 5.8E-26 154.2 17.4 154 191-358 30-212 (227)
12 PHA02826 IL-1 receptor-like pr 99.9 1E-20 2.2E-25 150.8 18.1 172 71-258 21-211 (227)
13 cd05762 Ig8_MLCK Eighth immuno 99.8 1.9E-18 4.2E-23 119.6 11.9 97 274-375 1-97 (98)
14 cd05851 Ig3_Contactin-1 Third 99.7 3.9E-17 8.4E-22 110.9 10.3 88 273-369 1-88 (88)
15 cd05735 Ig8_DSCAM Eight immuno 99.7 1.5E-16 3.3E-21 107.9 11.5 87 288-375 1-88 (88)
16 cd04975 Ig4_SCFR_like Fourth i 99.7 2.3E-16 5.1E-21 109.2 10.5 89 281-369 11-100 (101)
17 cd05745 Ig3_Peroxidasin Third 99.7 2.3E-16 4.9E-21 103.7 9.4 74 287-368 1-74 (74)
18 cd05852 Ig5_Contactin-1 Fifth 99.7 2.1E-16 4.6E-21 102.7 9.1 73 288-368 1-73 (73)
19 cd05737 Ig_Myomesin_like_C C-t 99.7 6.6E-16 1.4E-20 106.2 11.1 85 280-368 8-92 (92)
20 cd05747 Ig5_Titin_like M5, fif 99.7 6.7E-16 1.5E-20 106.2 10.7 89 273-366 3-91 (92)
21 cd05869 Ig5_NCAM-1 Fifth immun 99.7 1E-15 2.3E-20 106.4 10.9 96 273-368 2-97 (97)
22 cd05892 Ig_Myotilin_C C-termin 99.7 9.7E-16 2.1E-20 99.9 9.8 74 291-368 1-75 (75)
23 cd05863 Ig2_VEGFR-3 Second imm 99.7 8E-16 1.7E-20 97.4 9.0 66 291-369 1-66 (67)
24 cd05773 Ig8_hNephrin_like Eigh 99.7 1.1E-15 2.4E-20 108.1 10.8 101 271-372 2-108 (109)
25 cd05723 Ig4_Neogenin Fourth im 99.7 1.4E-15 3.1E-20 98.9 10.4 71 290-368 1-71 (71)
26 cd05730 Ig3_NCAM-1_like Third 99.7 1.4E-15 3E-20 105.5 11.0 81 283-370 13-94 (95)
27 cd05855 Ig_TrkB_d5 Fifth domai 99.7 1.2E-15 2.6E-20 99.7 9.5 76 292-367 2-77 (79)
28 PF07679 I-set: Immunoglobulin 99.7 2E-15 4.3E-20 104.0 11.2 90 274-368 1-90 (90)
29 cd05728 Ig4_Contactin-2-like F 99.7 1.5E-15 3.2E-20 102.7 10.1 81 279-368 5-85 (85)
30 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.9E-15 4.2E-20 101.9 10.6 81 283-368 5-86 (86)
31 cd05859 Ig4_PDGFR-alpha Fourth 99.6 2.2E-15 4.7E-20 104.6 10.3 88 282-369 12-100 (101)
32 cd04968 Ig3_Contactin_like Thi 99.6 3.5E-15 7.5E-20 101.9 11.2 86 274-368 2-87 (88)
33 cd04969 Ig5_Contactin_like Fif 99.6 2.6E-15 5.7E-20 98.4 9.5 73 288-368 1-73 (73)
34 cd05865 Ig1_NCAM-1 First immun 99.6 5.6E-15 1.2E-19 101.5 11.4 88 277-368 4-95 (96)
35 cd05867 Ig4_L1-CAM_like Fourth 99.6 5.8E-15 1.3E-19 97.5 10.5 74 288-368 1-75 (76)
36 cd05732 Ig5_NCAM-1_like Fifth 99.6 4.8E-15 1E-19 103.2 10.3 95 273-368 2-96 (96)
37 cd05748 Ig_Titin_like Immunogl 99.6 5.6E-15 1.2E-19 97.2 10.1 73 291-368 2-74 (74)
38 cd05854 Ig6_Contactin-2 Sixth 99.6 6.7E-15 1.5E-19 99.0 10.2 80 289-372 1-85 (85)
39 cd04972 Ig_TrkABC_d4 Fourth do 99.6 9.3E-15 2E-19 100.1 11.0 83 281-368 8-90 (90)
40 cd05868 Ig4_NrCAM Fourth immun 99.6 6.7E-15 1.5E-19 96.9 9.9 75 288-368 1-75 (76)
41 cd05891 Ig_M-protein_C C-termi 99.6 9.9E-15 2.1E-19 100.0 10.7 86 279-368 7-92 (92)
42 cd05762 Ig8_MLCK Eighth immuno 99.6 1.6E-14 3.5E-19 100.0 11.6 95 73-184 1-95 (98)
43 cd05870 Ig5_NCAM-2 Fifth immun 99.6 9.8E-15 2.1E-19 101.7 10.5 90 273-368 2-98 (98)
44 cd05893 Ig_Palladin_C C-termin 99.6 7.3E-15 1.6E-19 96.0 9.1 74 291-368 1-75 (75)
45 cd05746 Ig4_Peroxidasin Fourth 99.6 4.9E-15 1.1E-19 95.8 8.3 68 291-366 1-68 (69)
46 cd05864 Ig2_VEGFR-2 Second imm 99.6 6.4E-15 1.4E-19 94.5 8.7 67 292-368 2-68 (70)
47 cd05744 Ig_Myotilin_C_like Imm 99.6 1.1E-14 2.4E-19 95.6 9.9 74 291-368 1-75 (75)
48 cd05876 Ig3_L1-CAM Third immun 99.6 6.2E-15 1.3E-19 95.8 8.4 71 291-369 1-71 (71)
49 cd04976 Ig2_VEGFR Second immun 99.6 9.1E-15 2E-19 94.8 9.1 70 291-369 1-70 (71)
50 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 1.6E-14 3.4E-19 95.9 10.3 76 292-367 2-79 (81)
51 cd05853 Ig6_Contactin-4 Sixth 99.6 1.2E-14 2.6E-19 96.5 9.5 80 289-372 1-85 (85)
52 cd05857 Ig2_FGFR Second immuno 99.6 1.9E-14 4.1E-19 97.7 10.5 82 283-368 4-85 (85)
53 cd05851 Ig3_Contactin-1 Third 99.6 2.4E-14 5.3E-19 97.2 10.8 80 190-270 8-87 (88)
54 cd04978 Ig4_L1-NrCAM_like Four 99.6 2E-14 4.4E-19 95.3 9.9 75 288-368 1-75 (76)
55 cd05866 Ig1_NCAM-2 First immun 99.6 3.7E-14 7.9E-19 96.4 11.1 86 277-368 4-91 (92)
56 cd04970 Ig6_Contactin_like Six 99.6 2E-14 4.3E-19 97.3 9.6 82 289-372 1-85 (85)
57 cd05771 IgC_Tapasin_R Tapasin- 99.6 6.8E-14 1.5E-18 104.3 12.9 122 236-358 2-132 (139)
58 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 4.9E-14 1.1E-18 90.6 10.2 68 288-366 1-68 (69)
59 cd05726 Ig4_Robo Fhird immunog 99.6 3.8E-14 8.2E-19 97.1 10.2 78 288-373 1-86 (90)
60 cd05743 Ig_Perlecan_D2_like Im 99.6 3.5E-14 7.6E-19 94.2 9.5 76 288-368 1-76 (78)
61 cd05848 Ig1_Contactin-5 First 99.6 6.3E-14 1.4E-18 96.4 11.1 82 274-362 2-87 (94)
62 cd04973 Ig1_FGFR First immunog 99.6 2.5E-14 5.5E-19 95.1 8.8 78 281-368 2-79 (79)
63 cd05850 Ig1_Contactin-2 First 99.6 1E-13 2.2E-18 95.4 11.9 82 274-362 2-87 (94)
64 cd05760 Ig2_PTK7 Second immuno 99.6 5.2E-14 1.1E-18 93.0 9.8 72 291-369 1-75 (77)
65 cd05740 Ig_CEACAM_D4 Fourth im 99.6 9.8E-14 2.1E-18 94.6 11.2 79 281-368 11-90 (91)
66 cd05764 Ig_2 Subgroup of the i 99.6 7.1E-14 1.5E-18 92.0 10.1 73 288-368 1-74 (74)
67 cd05731 Ig3_L1-CAM_like Third 99.5 3.2E-14 7E-19 93.0 8.4 71 291-369 1-71 (71)
68 cd07693 Ig1_Robo First immunog 99.5 9E-14 2E-18 97.9 11.1 92 273-368 1-99 (100)
69 cd05856 Ig2_FGFRL1-like Second 99.5 3.6E-14 7.9E-19 95.8 8.4 78 284-368 5-82 (82)
70 cd05725 Ig3_Robo Third immunog 99.5 4.2E-14 9.2E-19 91.5 8.2 69 291-368 1-69 (69)
71 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 5.8E-14 1.3E-18 92.1 8.8 71 291-369 1-74 (74)
72 cd05763 Ig_1 Subgroup of the i 99.5 6.3E-14 1.4E-18 92.4 9.0 71 291-368 1-74 (75)
73 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.9E-13 4.2E-18 95.1 11.0 92 273-366 2-97 (98)
74 cd05736 Ig2_Follistatin_like S 99.5 1.4E-13 3E-18 91.1 9.7 73 292-369 2-74 (76)
75 cd05865 Ig1_NCAM-1 First immun 99.5 2.7E-13 5.8E-18 93.1 11.4 91 75-179 3-95 (96)
76 cd05858 Ig3_FGFR-2 Third immun 99.5 1.5E-13 3.2E-18 94.0 9.9 81 288-368 1-89 (90)
77 cd04975 Ig4_SCFR_like Fourth i 99.5 1.6E-13 3.5E-18 95.0 10.0 81 190-271 10-100 (101)
78 cd04974 Ig3_FGFR Third immunog 99.5 1.5E-13 3.3E-18 93.9 9.8 82 288-369 1-90 (90)
79 cd05866 Ig1_NCAM-2 First immun 99.5 2.6E-13 5.6E-18 92.2 10.7 89 75-179 3-91 (92)
80 cd04977 Ig1_NCAM-1_like First 99.5 2.6E-13 5.7E-18 93.0 10.9 87 277-368 4-92 (92)
81 cd05849 Ig1_Contactin-1 First 99.5 2.9E-13 6.3E-18 92.7 11.0 80 274-362 2-86 (93)
82 PF07679 I-set: Immunoglobulin 99.5 2.5E-13 5.3E-18 93.5 10.7 90 73-179 1-90 (90)
83 cd04968 Ig3_Contactin_like Thi 99.5 3.6E-13 7.8E-18 91.9 11.1 80 190-270 8-87 (88)
84 cd05852 Ig5_Contactin-1 Fifth 99.5 1.6E-13 3.4E-18 89.2 8.8 71 198-269 1-72 (73)
85 cd05724 Ig2_Robo Second immuno 99.5 3E-13 6.5E-18 92.1 10.3 80 280-367 3-85 (86)
86 cd05737 Ig_Myomesin_like_C C-t 99.5 3.5E-13 7.6E-18 92.6 10.6 79 190-269 8-91 (92)
87 cd05745 Ig3_Peroxidasin Third 99.5 1.6E-13 3.4E-18 90.1 8.3 72 197-269 1-73 (74)
88 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 6E-13 1.3E-17 89.8 11.0 78 191-269 3-85 (86)
89 cd05771 IgC_Tapasin_R Tapasin- 99.5 1E-12 2.2E-17 98.0 13.4 113 145-259 2-132 (139)
90 KOG3515|consensus 99.5 1.5E-13 3.3E-18 124.1 10.4 348 2-371 36-398 (741)
91 cd05728 Ig4_Contactin-2-like F 99.5 2.8E-13 6E-18 91.5 9.2 79 190-269 6-84 (85)
92 cd05722 Ig1_Neogenin First imm 99.5 6.3E-13 1.4E-17 92.1 10.6 84 279-368 5-95 (95)
93 cd05747 Ig5_Titin_like M5, fif 99.5 7.1E-13 1.5E-17 91.1 10.5 89 72-177 3-91 (92)
94 KOG3515|consensus 99.5 2.2E-13 4.8E-18 123.1 10.0 345 2-372 127-496 (741)
95 cd07702 Ig2_VEGFR-1 Second imm 99.5 5.1E-13 1.1E-17 85.8 8.7 66 292-366 2-68 (72)
96 cd05735 Ig8_DSCAM Eight immuno 99.5 9.5E-13 2.1E-17 89.3 10.4 77 198-275 1-86 (88)
97 cd05750 Ig_Pro_neuregulin Immu 99.5 3.9E-13 8.4E-18 88.9 8.3 73 291-365 1-74 (75)
98 cd05859 Ig4_PDGFR-alpha Fourth 99.5 7.7E-13 1.7E-17 91.8 10.0 80 191-271 11-100 (101)
99 cd05867 Ig4_L1-CAM_like Fourth 99.5 7.9E-13 1.7E-17 87.3 9.7 72 198-270 1-75 (76)
100 cd05749 Ig2_Tyro3_like Second 99.5 8.1E-13 1.8E-17 87.4 9.6 71 279-362 4-75 (81)
101 cd05898 Ig5_KIRREL3 Fifth immu 99.5 1.4E-12 3E-17 89.0 10.9 92 273-366 2-97 (98)
102 cd05742 Ig1_VEGFR_like First i 99.5 4.5E-13 9.8E-18 90.4 8.5 81 288-368 1-83 (84)
103 cd05740 Ig_CEACAM_D4 Fourth im 99.5 9.6E-13 2.1E-17 89.7 10.2 80 190-270 10-90 (91)
104 cd05863 Ig2_VEGFR-3 Second imm 99.5 3.8E-13 8.3E-18 85.1 7.5 65 201-270 1-65 (67)
105 cd04973 Ig1_FGFR First immunog 99.5 1.3E-12 2.8E-17 86.8 10.3 76 191-268 2-77 (79)
106 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.2E-12 4.7E-17 89.8 11.3 96 72-178 2-97 (98)
107 cd04977 Ig1_NCAM-1_like First 99.4 2.2E-12 4.7E-17 88.4 10.9 90 75-179 3-92 (92)
108 cd05756 Ig1_IL1R_like First im 99.4 5.2E-13 1.1E-17 91.4 7.7 80 282-368 8-94 (94)
109 cd05752 Ig1_FcgammaR_like Frst 99.4 8.4E-13 1.8E-17 86.8 8.3 73 274-362 1-74 (78)
110 cd05765 Ig_3 Subgroup of the i 99.4 5E-13 1.1E-17 89.8 7.3 77 288-368 1-81 (81)
111 cd04976 Ig2_VEGFR Second immun 99.4 7.1E-13 1.5E-17 85.9 7.7 69 201-270 1-69 (71)
112 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.7E-12 3.7E-17 85.5 9.1 68 291-363 1-72 (77)
113 cd05868 Ig4_NrCAM Fourth immun 99.4 1.6E-12 3.4E-17 85.6 8.8 72 198-270 1-75 (76)
114 cd04967 Ig1_Contactin First Ig 99.4 3.2E-12 6.9E-17 87.7 10.7 82 274-362 2-87 (91)
115 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.3E-12 2.7E-17 86.4 8.3 67 291-362 1-71 (77)
116 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 5E-12 1.1E-16 84.9 11.0 81 288-369 1-83 (84)
117 cd04972 Ig_TrkABC_d4 Fourth do 99.4 4E-12 8.7E-17 87.0 10.5 79 190-269 7-89 (90)
118 cd05892 Ig_Myotilin_C C-termin 99.4 1.8E-12 4E-17 84.5 8.4 68 201-269 1-74 (75)
119 cd04978 Ig4_L1-NrCAM_like Four 99.4 2.4E-12 5.2E-17 85.2 9.0 72 198-270 1-75 (76)
120 cd05725 Ig3_Robo Third immunog 99.4 2.2E-12 4.7E-17 83.5 8.6 68 201-269 1-68 (69)
121 cd05734 Ig7_DSCAM Seventh immu 99.4 9.7E-13 2.1E-17 87.6 7.0 69 291-367 1-78 (79)
122 cd05869 Ig5_NCAM-1 Fifth immun 99.4 8.2E-12 1.8E-16 86.7 11.9 95 72-178 2-96 (97)
123 cd05730 Ig3_NCAM-1_like Third 99.4 4.1E-12 8.8E-17 88.1 10.4 81 191-272 11-94 (95)
124 cd05875 Ig6_hNeurofascin_like 99.4 2.9E-12 6.3E-17 84.4 9.1 66 291-363 1-72 (77)
125 cd05882 Ig1_Necl-1 First (N-te 99.4 8.7E-12 1.9E-16 85.3 11.7 80 79-165 4-83 (95)
126 cd05864 Ig2_VEGFR-2 Second imm 99.4 2E-12 4.4E-17 82.9 7.9 60 201-261 1-60 (70)
127 cd05723 Ig4_Neogenin Fourth im 99.4 2.7E-12 5.9E-17 83.3 8.7 69 200-269 1-70 (71)
128 cd04969 Ig5_Contactin_like Fif 99.4 2.7E-12 5.9E-17 84.0 8.7 71 198-269 1-72 (73)
129 cd05893 Ig_Palladin_C C-termin 99.4 1.9E-12 4.1E-17 84.6 7.8 68 201-269 1-74 (75)
130 cd05724 Ig2_Robo Second immuno 99.4 5E-12 1.1E-16 86.0 10.3 80 190-269 3-85 (86)
131 cd05891 Ig_M-protein_C C-termi 99.4 5.6E-12 1.2E-16 86.4 10.5 79 190-269 8-91 (92)
132 cd05857 Ig2_FGFR Second immuno 99.4 3.8E-12 8.2E-17 86.3 9.5 77 193-270 4-85 (85)
133 cd05854 Ig6_Contactin-2 Sixth 99.4 4.5E-12 9.7E-17 85.3 9.6 75 199-274 1-85 (85)
134 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 3.5E-12 7.7E-17 81.9 8.5 67 198-267 1-67 (69)
135 cd05749 Ig2_Tyro3_like Second 99.4 3.5E-12 7.6E-17 84.4 8.7 75 190-268 5-80 (81)
136 cd05729 Ig2_FGFR_like Second i 99.4 7.7E-12 1.7E-16 85.0 10.7 81 284-368 5-85 (85)
137 cd05876 Ig3_L1-CAM Third immun 99.4 2.6E-12 5.7E-17 83.4 7.9 69 201-270 1-70 (71)
138 cd05895 Ig_Pro_neuregulin-1 Im 99.4 3.5E-12 7.5E-17 84.3 8.3 73 291-366 1-76 (76)
139 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.3E-11 2.8E-16 85.9 11.5 94 72-178 2-95 (96)
140 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 3.4E-12 7.5E-17 83.6 7.8 70 201-270 1-73 (74)
141 cd05848 Ig1_Contactin-5 First 99.4 7.1E-12 1.5E-16 86.2 9.5 72 197-268 18-92 (94)
142 cd07701 Ig1_Necl-3 First (N-te 99.4 1E-11 2.2E-16 85.4 10.1 81 79-166 4-84 (95)
143 cd05856 Ig2_FGFRL1-like Second 99.4 7.2E-12 1.6E-16 84.4 9.2 75 194-269 5-81 (82)
144 cd05849 Ig1_Contactin-1 First 99.4 1.2E-11 2.5E-16 84.7 10.2 71 198-268 19-91 (93)
145 cd07693 Ig1_Robo First immunog 99.4 8.7E-12 1.9E-16 87.7 9.7 97 72-179 1-99 (100)
146 cd05752 Ig1_FcgammaR_like Frst 99.3 2.7E-12 5.9E-17 84.4 6.5 77 73-179 1-78 (78)
147 cd05773 Ig8_hNephrin_like Eigh 99.3 2.3E-11 5.1E-16 86.0 11.7 77 197-274 22-108 (109)
148 cd04970 Ig6_Contactin_like Six 99.3 6.9E-12 1.5E-16 84.8 8.7 75 199-274 1-85 (85)
149 cd05748 Ig_Titin_like Immunogl 99.3 9.6E-12 2.1E-16 81.7 9.1 69 200-269 1-73 (74)
150 cd05746 Ig4_Peroxidasin Fourth 99.3 4.6E-12 1E-16 81.8 7.3 67 201-268 1-68 (69)
151 cd05722 Ig1_Neogenin First imm 99.3 1E-11 2.2E-16 86.0 9.6 81 190-270 6-95 (95)
152 cd05850 Ig1_Contactin-2 First 99.3 2E-11 4.3E-16 84.0 10.9 71 198-268 19-92 (94)
153 cd05853 Ig6_Contactin-4 Sixth 99.3 8.5E-12 1.8E-16 82.9 8.6 75 199-274 1-85 (85)
154 cd07702 Ig2_VEGFR-1 Second imm 99.3 4.4E-12 9.4E-17 81.5 6.9 60 201-260 1-61 (72)
155 cd05726 Ig4_Robo Fhird immunog 99.3 1.5E-11 3.2E-16 84.2 9.6 75 198-273 1-84 (90)
156 cd05744 Ig_Myotilin_C_like Imm 99.3 1.2E-11 2.7E-16 81.0 8.8 68 201-269 1-74 (75)
157 cd05760 Ig2_PTK7 Second immuno 99.3 8.7E-12 1.9E-16 82.3 8.0 70 201-270 1-74 (77)
158 cd04983 IgV_TCR_alpha_like Imm 99.3 3.1E-11 6.7E-16 86.2 11.4 90 77-166 3-92 (109)
159 cd05756 Ig1_IL1R_like First im 99.3 1.5E-11 3.3E-16 84.1 9.0 78 191-269 7-93 (94)
160 cd05743 Ig_Perlecan_D2_like Im 99.3 1.5E-11 3.3E-16 81.5 8.6 67 87-169 1-67 (78)
161 cd05754 Ig3_Perlecan_like Thir 99.3 1.4E-11 3.1E-16 83.3 8.6 76 280-366 8-84 (85)
162 cd05873 Ig_Sema4D_like Immunog 99.3 2E-11 4.4E-16 81.4 9.0 68 280-357 3-71 (87)
163 cd05855 Ig_TrkB_d5 Fifth domai 99.3 2.4E-11 5.1E-16 79.5 8.4 66 202-268 2-76 (79)
164 cd05764 Ig_2 Subgroup of the i 99.3 2.6E-11 5.7E-16 79.6 8.8 71 198-269 1-73 (74)
165 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 2.7E-11 5.9E-16 80.4 8.8 66 202-268 2-78 (81)
166 cd05731 Ig3_L1-CAM_like Third 99.3 1.7E-11 3.7E-16 80.0 7.5 69 201-270 1-70 (71)
167 cd05753 Ig2_FcgammaR_like Seco 99.3 2E-11 4.4E-16 81.6 7.5 77 79-179 6-83 (83)
168 cd05862 Ig1_VEGFR First immuno 99.3 3.8E-11 8.3E-16 80.9 8.8 83 288-370 1-86 (86)
169 cd05763 Ig_1 Subgroup of the i 99.3 2.9E-11 6.3E-16 79.6 8.1 69 201-270 1-74 (75)
170 cd05734 Ig7_DSCAM Seventh immu 99.3 3.4E-11 7.3E-16 80.2 8.4 70 201-270 1-79 (79)
171 cd05757 Ig2_IL1R_like Second i 99.3 4E-11 8.6E-16 81.5 8.7 78 283-369 5-87 (92)
172 cd04979 Ig_Semaphorin_C Immuno 99.3 3.8E-11 8.2E-16 82.0 8.6 81 282-370 5-88 (89)
173 cd05881 Ig1_Necl-2 First (N-te 99.3 1.2E-10 2.6E-15 79.0 10.6 80 79-165 4-83 (95)
174 cd04979 Ig_Semaphorin_C Immuno 99.3 9.3E-11 2E-15 80.1 10.2 81 190-271 3-87 (89)
175 cd05860 Ig4_SCFR Fourth immuno 99.3 9.8E-11 2.1E-15 79.1 9.9 89 281-369 11-100 (101)
176 cd04974 Ig3_FGFR Third immunog 99.2 6.4E-11 1.4E-15 80.8 8.9 84 87-179 1-89 (90)
177 cd05858 Ig3_FGFR-2 Third immun 99.2 8.6E-11 1.9E-15 80.3 9.3 72 198-270 1-89 (90)
178 cd05874 Ig6_NrCAM Sixth immuno 99.2 7.1E-11 1.5E-15 77.8 8.4 68 201-268 1-76 (77)
179 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.5E-10 3.3E-15 80.1 10.4 91 79-178 4-94 (95)
180 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.5E-10 3.2E-15 77.7 10.0 82 87-180 1-83 (84)
181 cd05882 Ig1_Necl-1 First (N-te 99.2 1.6E-10 3.6E-15 79.0 10.3 82 281-367 5-94 (95)
182 cd07701 Ig1_Necl-3 First (N-te 99.2 9.5E-11 2.1E-15 80.6 9.2 83 281-368 5-95 (95)
183 cd05733 Ig6_L1-CAM_like Sixth 99.2 5.2E-11 1.1E-15 78.6 7.5 68 201-268 1-76 (77)
184 cd05753 Ig2_FcgammaR_like Seco 99.2 8.1E-11 1.8E-15 78.7 8.1 68 280-360 6-74 (83)
185 cd05875 Ig6_hNeurofascin_like 99.2 7.2E-11 1.6E-15 77.7 7.7 68 201-268 1-76 (77)
186 cd04980 IgV_L_kappa Immunoglob 99.2 2E-10 4.3E-15 81.3 10.3 89 75-165 3-92 (106)
187 PHA03376 BARF1; Provisional 99.2 4.2E-10 9.1E-15 83.3 12.1 136 81-222 20-163 (221)
188 cd05765 Ig_3 Subgroup of the i 99.2 1.3E-10 2.8E-15 78.0 8.6 72 198-270 1-81 (81)
189 cd05727 Ig2_Contactin-2-like S 99.2 7.1E-11 1.5E-15 79.9 7.1 72 282-360 12-86 (96)
190 cd05758 Ig5_KIRREL3-like Fifth 99.2 3.6E-10 7.7E-15 78.6 10.6 78 190-268 8-97 (98)
191 cd05736 Ig2_Follistatin_like S 99.2 1.6E-10 3.4E-15 76.4 8.3 70 201-271 1-74 (76)
192 cd05873 Ig_Sema4D_like Immunog 99.2 2.7E-10 5.8E-15 76.0 9.2 67 190-257 3-70 (87)
193 cd05899 IgV_TCR_beta Immunoglo 99.2 3.5E-10 7.6E-15 80.6 10.6 87 77-165 3-93 (110)
194 cd05750 Ig_Pro_neuregulin Immu 99.2 1.2E-10 2.7E-15 76.8 7.6 61 201-261 1-69 (75)
195 cd05742 Ig1_VEGFR_like First i 99.2 2.6E-10 5.6E-15 76.9 9.2 72 198-270 1-83 (84)
196 PF07686 V-set: Immunoglobulin 99.2 3.1E-10 6.6E-15 81.9 10.3 105 75-179 4-114 (114)
197 cd05757 Ig2_IL1R_like Second i 99.2 2.8E-10 6E-15 77.4 8.7 69 193-261 5-78 (92)
198 smart00408 IGc2 Immunoglobulin 99.2 2.9E-10 6.4E-15 72.1 8.5 63 287-358 1-63 (63)
199 PF13895 Ig_2: Immunoglobulin 99.2 4.1E-10 8.8E-15 75.4 9.2 78 274-368 2-80 (80)
200 cd04967 Ig1_Contactin First Ig 99.1 2.9E-10 6.3E-15 77.9 8.4 68 197-264 18-88 (91)
201 cd00099 IgV Immunoglobulin var 99.1 4.5E-10 9.7E-15 79.6 9.7 85 83-167 2-90 (105)
202 cd07706 IgV_TCR_delta Immunogl 99.1 7.6E-10 1.7E-14 79.7 10.9 90 76-165 3-93 (116)
203 cd07690 Ig1_CD4 First immunogl 99.1 1.9E-10 4.2E-15 78.1 7.2 81 83-165 3-86 (94)
204 cd05880 Ig_EVA1 Immunoglobulin 99.1 1.4E-09 3E-14 77.7 11.8 90 79-168 5-103 (115)
205 cd05871 Ig_Semaphorin_classIII 99.1 5.2E-10 1.1E-14 76.1 9.0 78 283-370 6-90 (91)
206 cd05879 Ig_P0 Immunoglobulin ( 99.1 1.9E-09 4E-14 76.6 12.1 90 79-168 5-104 (116)
207 smart00409 IG Immunoglobulin. 99.1 1.6E-09 3.4E-14 73.5 11.4 82 282-368 3-85 (86)
208 smart00410 IG_like Immunoglobu 99.1 1.6E-09 3.4E-14 73.5 11.4 82 282-368 3-85 (86)
209 cd05741 Ig_CEACAM_D1_like Firs 99.1 3.1E-10 6.6E-15 78.2 7.7 87 87-178 1-91 (92)
210 cd04982 IgV_TCR_gamma Immunogl 99.1 1.2E-09 2.5E-14 78.8 11.0 87 78-164 4-97 (116)
211 cd04984 IgV_L_lambda Immunoglo 99.1 9.2E-10 2E-14 76.6 9.9 81 83-165 2-84 (98)
212 cd05715 Ig_P0-like Immunoglobu 99.1 2E-09 4.4E-14 77.4 11.9 90 79-168 5-104 (116)
213 cd05754 Ig3_Perlecan_like Thir 99.1 7.9E-10 1.7E-14 74.7 9.2 70 190-261 8-78 (85)
214 cd05888 Ig1_Nectin-4_like Frst 99.1 1.9E-09 4.2E-14 75.0 11.1 92 88-179 1-99 (100)
215 cd05885 Ig2_Necl-4 Second immu 99.1 7E-10 1.5E-14 72.3 7.9 68 290-360 1-69 (80)
216 cd05775 Ig_SLAM-CD84_like_N N- 99.1 4.7E-10 1E-14 77.6 7.5 90 85-179 2-96 (97)
217 cd05716 Ig_pIgR Immunoglobulin 99.1 1.3E-09 2.7E-14 76.0 9.0 83 82-165 2-85 (98)
218 cd05774 Ig_CEACAM_D1 First imm 99.1 8.7E-10 1.9E-14 76.6 8.1 98 76-178 2-104 (105)
219 cd05729 Ig2_FGFR_like Second i 99.1 2.2E-09 4.7E-14 72.8 10.0 76 193-269 4-84 (85)
220 cd07690 Ig1_CD4 First immunogl 99.1 8.6E-10 1.9E-14 74.9 7.7 76 284-361 3-92 (94)
221 cd05714 Ig_CSPGs_LP Immunoglob 99.1 3.7E-09 8.1E-14 74.8 10.9 93 86-180 1-103 (106)
222 cd05871 Ig_Semaphorin_classIII 99.0 4.4E-09 9.5E-14 71.5 10.5 79 192-271 5-89 (91)
223 cd05895 Ig_Pro_neuregulin-1 Im 99.0 1.2E-09 2.7E-14 72.0 7.6 61 201-261 1-70 (76)
224 cd05717 Ig1_Necl-1-3_like Firs 99.0 3.1E-09 6.8E-14 73.5 10.0 83 281-368 5-95 (95)
225 smart00408 IGc2 Immunoglobulin 99.0 1.4E-09 3.1E-14 68.8 7.6 63 197-259 1-63 (63)
226 cd05898 Ig5_KIRREL3 Fifth immu 99.0 6.3E-09 1.4E-13 71.1 10.7 79 189-268 7-97 (98)
227 cd05727 Ig2_Contactin-2-like S 99.0 2E-09 4.4E-14 72.9 8.2 71 190-260 10-85 (96)
228 cd05759 Ig2_KIRREL3-like Secon 99.0 3.1E-09 6.7E-14 71.2 8.6 75 291-366 2-80 (82)
229 cd05713 Ig_MOG_like Immunoglob 99.0 5.4E-09 1.2E-13 73.1 10.2 89 87-179 1-99 (100)
230 cd05712 Ig_Siglec_N Immunoglob 99.0 4.3E-09 9.4E-14 75.9 9.5 87 79-165 6-101 (119)
231 PF00047 ig: Immunoglobulin do 99.0 2.4E-09 5.2E-14 68.1 7.3 63 87-163 1-64 (64)
232 PF00047 ig: Immunoglobulin do 99.0 1.2E-09 2.5E-14 69.5 5.8 63 288-353 1-64 (64)
233 cd05845 Ig2_L1-CAM_like Second 99.0 1.2E-09 2.6E-14 73.8 6.0 71 281-359 11-84 (95)
234 cd05900 Ig_Aggrecan Immunoglob 99.0 9E-09 2E-13 72.5 10.7 93 86-180 1-109 (112)
235 cd05897 Ig2_IL1R2_like Second 99.0 2.3E-09 5E-14 72.7 7.4 72 284-361 6-82 (95)
236 cd05878 Ig_Aggrecan_like Immun 99.0 7.9E-09 1.7E-13 73.1 10.5 93 87-181 2-108 (110)
237 cd05846 Ig1_MRC-OX-2_like Firs 99.0 6E-09 1.3E-13 72.2 9.7 92 87-180 1-97 (97)
238 cd05718 Ig1_PVR_like First imm 99.0 5.7E-09 1.2E-13 72.8 9.7 90 88-179 1-97 (98)
239 cd05886 Ig1_Nectin-1_like Firs 99.0 1.5E-08 3.2E-13 69.7 10.9 90 89-180 2-99 (99)
240 PF13895 Ig_2: Immunoglobulin 99.0 4.4E-09 9.5E-14 70.3 8.3 72 193-270 9-80 (80)
241 cd05887 Ig1_Nectin-3_like Firs 99.0 1.2E-08 2.7E-13 69.4 10.3 90 88-179 1-95 (96)
242 cd05877 Ig_LP_like Immunoglobu 99.0 1.1E-08 2.3E-13 72.5 10.2 93 86-180 1-103 (106)
243 cd05872 Ig_Sema4B_like Immunog 98.9 7.7E-09 1.7E-13 68.5 8.5 75 282-367 5-79 (85)
244 cd07700 IgV_CD8_beta Immunoglo 98.9 1.6E-08 3.5E-13 71.5 10.4 82 83-164 2-92 (107)
245 PHA03376 BARF1; Provisional 98.9 8E-08 1.7E-12 71.5 14.0 119 192-311 20-162 (221)
246 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.1E-08 4.5E-13 71.0 10.5 85 287-371 1-105 (106)
247 smart00410 IG_like Immunoglobu 98.9 3.5E-08 7.5E-13 66.8 10.9 82 81-179 3-85 (86)
248 smart00409 IG Immunoglobulin. 98.9 3.5E-08 7.5E-13 66.8 10.9 82 81-179 3-85 (86)
249 cd05845 Ig2_L1-CAM_like Second 98.9 8.8E-09 1.9E-13 69.6 7.6 72 188-259 8-83 (95)
250 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 1.6E-08 3.4E-13 68.7 8.4 84 283-368 10-104 (104)
251 PHA02987 Ig domain OX-2-like p 98.9 3.5E-08 7.7E-13 73.8 10.9 98 81-183 24-125 (189)
252 cd04981 IgV_H Immunoglobulin ( 98.9 3.5E-08 7.6E-13 70.8 10.6 86 79-164 4-96 (117)
253 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.5E-08 5.5E-13 67.8 9.1 70 191-260 8-95 (104)
254 PF13927 Ig_3: Immunoglobulin 98.9 5.7E-09 1.2E-13 68.8 6.0 74 273-355 1-75 (75)
255 cd05860 Ig4_SCFR Fourth immuno 98.9 5.5E-08 1.2E-12 65.9 10.6 81 190-271 10-100 (101)
256 cd05889 Ig1_DNAM-1_like First 98.9 4.8E-08 1E-12 66.6 10.4 89 88-178 1-94 (96)
257 cd05897 Ig2_IL1R2_like Second 98.9 1.3E-08 2.9E-13 69.0 7.6 68 193-260 5-80 (95)
258 cd05881 Ig1_Necl-2 First (N-te 98.9 4.8E-08 1E-12 66.4 9.9 72 281-356 5-84 (95)
259 cd05751 Ig1_LILRB1_like First 98.8 2.5E-08 5.4E-13 68.1 8.6 87 72-179 2-90 (91)
260 cd05902 Ig_Neurocan Immunoglob 98.8 5.8E-08 1.3E-12 68.1 10.5 93 87-180 2-107 (110)
261 cd05885 Ig2_Necl-4 Second immu 98.8 3E-08 6.6E-13 64.6 8.4 61 201-261 2-69 (80)
262 cd05862 Ig1_VEGFR First immuno 98.8 2.7E-08 5.8E-13 67.0 8.3 73 198-271 1-85 (86)
263 cd05720 Ig_CD8_alpha Immunoglo 98.8 3.1E-08 6.7E-13 69.5 8.7 80 83-164 2-89 (104)
264 cd05877 Ig_LP_like Immunoglobu 98.8 6.6E-08 1.4E-12 68.4 10.5 81 287-371 1-105 (106)
265 cd05774 Ig_CEACAM_D1 First imm 98.8 4.9E-08 1.1E-12 67.9 9.3 91 278-368 3-105 (105)
266 cd05900 Ig_Aggrecan Immunoglob 98.8 1.3E-07 2.9E-12 66.6 11.3 83 287-371 1-111 (112)
267 cd05751 Ig1_LILRB1_like First 98.8 2.8E-08 6E-13 67.9 7.7 74 273-356 2-75 (91)
268 cd05872 Ig_Sema4B_like Immunog 98.8 5E-08 1.1E-12 64.6 8.5 66 191-257 4-69 (85)
269 cd05901 Ig_Versican Immunoglob 98.8 2.4E-07 5.3E-12 65.0 11.9 93 87-180 2-114 (117)
270 PHA03269 envelope glycoprotein 98.8 4.8E-06 1E-10 71.3 20.8 211 131-356 276-513 (566)
271 cd05711 Ig_FcalphaRI Immunoglo 98.7 9.5E-08 2.1E-12 65.5 8.8 75 73-165 2-76 (94)
272 cd05878 Ig_Aggrecan_like Immun 98.7 2.3E-07 4.9E-12 65.7 11.0 83 287-371 1-109 (110)
273 cd00098 IgC Immunoglobulin Con 98.7 4.8E-08 1E-12 67.6 6.8 74 286-359 11-87 (95)
274 cd05713 Ig_MOG_like Immunoglob 98.7 2.1E-07 4.5E-12 65.0 9.9 79 288-368 1-99 (100)
275 PHA03270 envelope glycoprotein 98.7 3.5E-05 7.5E-10 65.3 23.5 163 144-317 182-364 (466)
276 cd05718 Ig1_PVR_like First imm 98.7 2.3E-07 5.1E-12 64.6 9.4 80 289-368 1-97 (98)
277 cd05761 Ig2_Necl-1-4_like Seco 98.7 1.9E-07 4E-12 62.3 8.2 69 291-360 2-71 (82)
278 cd05883 Ig2_Necl-2 Second immu 98.6 4.8E-07 1.1E-11 59.2 9.3 76 291-368 2-79 (82)
279 cd05886 Ig1_Nectin-1_like Firs 98.6 6.4E-07 1.4E-11 61.7 10.3 37 332-368 61-98 (99)
280 cd05759 Ig2_KIRREL3-like Secon 98.6 2.6E-07 5.6E-12 61.8 8.1 69 200-268 1-80 (82)
281 smart00406 IGv Immunoglobulin 98.6 2.3E-07 5E-12 62.0 7.9 75 89-163 1-81 (81)
282 cd04983 IgV_TCR_alpha_like Imm 98.6 2.3E-07 5.1E-12 66.0 8.2 76 280-358 5-94 (109)
283 cd05755 Ig2_ICAM-1_like Second 98.6 5.2E-07 1.1E-11 61.6 9.0 82 276-360 4-88 (100)
284 cd05884 Ig2_Necl-3 Second immu 98.6 2.7E-07 5.8E-12 61.4 7.2 70 291-360 2-72 (83)
285 cd05902 Ig_Neurocan Immunoglob 98.6 9.2E-07 2E-11 62.1 10.2 83 287-371 1-109 (110)
286 PF13927 Ig_3: Immunoglobulin 98.6 1.2E-07 2.5E-12 62.4 5.5 74 72-165 1-75 (75)
287 PHA03273 envelope glycoprotein 98.6 2.2E-05 4.7E-10 67.2 20.0 158 143-311 197-376 (486)
288 cd05883 Ig2_Necl-2 Second immu 98.6 8.5E-07 1.8E-11 58.1 8.9 72 201-272 2-81 (82)
289 cd05741 Ig_CEACAM_D1_like Firs 98.6 4.2E-07 9.1E-12 62.5 8.0 72 198-269 1-91 (92)
290 cd05879 Ig_P0 Immunoglobulin ( 98.6 9.5E-07 2.1E-11 62.8 9.7 85 280-367 5-115 (116)
291 cd05899 IgV_TCR_beta Immunoglo 98.6 5.1E-07 1.1E-11 64.3 8.4 75 279-358 4-96 (110)
292 cd05880 Ig_EVA1 Immunoglobulin 98.6 8.6E-07 1.9E-11 63.4 9.5 80 280-359 5-104 (115)
293 cd07705 Ig2_Necl-1 Second immu 98.5 9.4E-07 2E-11 58.9 8.8 69 291-360 2-72 (83)
294 PHA03271 envelope glycoprotein 98.5 0.00021 4.7E-09 60.3 24.0 235 69-314 91-387 (490)
295 cd05888 Ig1_Nectin-4_like Frst 98.5 1.7E-06 3.8E-11 60.1 10.2 76 290-368 2-99 (100)
296 cd05901 Ig_Versican Immunoglob 98.5 3.3E-06 7.1E-11 59.4 11.1 40 332-371 77-116 (117)
297 cd05775 Ig_SLAM-CD84_like_N N- 98.5 5.8E-07 1.3E-11 62.1 7.2 83 286-368 2-96 (97)
298 cd05715 Ig_P0-like Immunoglobu 98.5 1.9E-06 4E-11 62.0 9.6 88 280-367 5-115 (116)
299 cd05887 Ig1_Nectin-3_like Firs 98.5 2.6E-06 5.7E-11 58.0 9.6 75 290-368 2-95 (96)
300 cd05846 Ig1_MRC-OX-2_like Firs 98.5 2.5E-06 5.4E-11 59.1 9.4 81 288-368 1-96 (97)
301 cd05721 IgV_CTLA-4 Immunoglobu 98.4 2.5E-06 5.4E-11 59.2 9.1 86 78-164 4-94 (115)
302 cd00099 IgV Immunoglobulin var 98.4 1.5E-06 3.2E-11 61.4 8.2 72 284-358 2-91 (105)
303 cd07694 Ig2_CD4 Second immunog 98.4 3.9E-06 8.3E-11 54.8 9.0 78 282-370 8-87 (88)
304 cd05772 IgC_SIRP Signal-regula 98.4 4.6E-06 1E-10 58.7 9.9 77 282-359 15-94 (111)
305 cd07699 IgC_L Immunoglobulin C 98.4 2E-06 4.4E-11 59.6 7.0 86 274-359 2-91 (100)
306 PF08205 C2-set_2: CD80-like C 98.3 3.5E-06 7.5E-11 57.4 7.7 73 288-360 14-87 (89)
307 cd04980 IgV_L_kappa Immunoglob 98.3 2.6E-06 5.7E-11 60.1 7.2 73 279-356 6-93 (106)
308 cd05711 Ig_FcalphaRI Immunoglo 98.3 6.1E-06 1.3E-10 56.6 8.5 64 192-256 9-76 (94)
309 PF07686 V-set: Immunoglobulin 98.3 4.1E-06 8.8E-11 60.1 7.8 86 280-368 8-114 (114)
310 cd05847 IgC_CH2_IgE CH2 domain 98.3 5.5E-06 1.2E-10 56.5 7.8 76 287-362 13-91 (94)
311 cd05889 Ig1_DNAM-1_like First 98.3 1.1E-05 2.4E-10 55.0 9.2 79 289-367 1-94 (96)
312 cd07698 IgC_MHC_I_alpha3 Class 98.3 1E-05 2.2E-10 55.4 9.1 81 273-359 2-85 (93)
313 PHA02987 Ig domain OX-2-like p 98.3 1.5E-05 3.2E-10 60.1 10.3 83 192-274 24-125 (189)
314 cd05768 IgC_CH4 CH4 domain (fo 98.3 5.1E-06 1.1E-10 57.7 7.2 77 283-359 11-93 (102)
315 cd04982 IgV_TCR_gamma Immunogl 98.2 6E-06 1.3E-10 59.4 7.6 74 280-356 5-99 (116)
316 cd07694 Ig2_CD4 Second immunog 98.2 1.6E-05 3.5E-10 52.0 8.6 62 194-257 10-73 (88)
317 cd04984 IgV_L_lambda Immunoglo 98.2 6.4E-06 1.4E-10 57.2 7.3 68 284-356 2-85 (98)
318 cd05755 Ig2_ICAM-1_like Second 98.2 9.7E-06 2.1E-10 55.5 7.9 80 75-168 4-86 (100)
319 cd00096 Ig Immunoglobulin doma 98.2 1.1E-05 2.4E-10 52.0 8.1 68 291-359 1-68 (74)
320 cd07696 IgC_CH3 CH3 domain (th 98.2 6E-06 1.3E-10 56.5 6.6 82 279-360 5-89 (96)
321 cd05770 IgC_beta2m Class I maj 98.2 3.3E-05 7.2E-10 52.3 9.6 69 286-358 13-84 (93)
322 cd05766 IgC_MHC_II_beta Class 98.2 5.4E-05 1.2E-09 51.7 10.7 72 286-360 12-86 (94)
323 cd05769 IgC_TCR_beta T cell re 98.2 1.6E-05 3.4E-10 56.3 8.1 92 274-365 3-100 (115)
324 cd04985 IgC_CH1 CH1 domain (fi 98.2 2.5E-05 5.5E-10 53.3 8.8 71 287-358 15-88 (95)
325 cd05761 Ig2_Necl-1-4_like Seco 98.1 2.5E-05 5.3E-10 52.1 8.5 60 201-260 2-70 (82)
326 smart00407 IGc1 Immunoglobulin 98.1 1.7E-05 3.7E-10 51.8 7.5 67 291-357 2-71 (75)
327 PF07654 C1-set: Immunoglobuli 98.1 2.2E-05 4.8E-10 52.5 8.1 72 286-360 6-80 (83)
328 cd05716 Ig_pIgR Immunoglobulin 98.1 1.1E-05 2.4E-10 56.0 6.8 71 284-357 3-87 (98)
329 cd05767 IgC_MHC_II_alpha Class 98.1 8E-05 1.7E-09 50.7 10.6 69 287-358 14-85 (94)
330 cd07705 Ig2_Necl-1 Second immu 98.1 4.1E-05 8.9E-10 51.0 8.8 60 201-260 2-71 (83)
331 cd07706 IgV_TCR_delta Immunogl 98.1 2E-05 4.2E-10 56.7 7.6 74 280-356 6-94 (116)
332 cd00098 IgC Immunoglobulin Con 98.1 1.7E-05 3.6E-10 54.8 6.9 74 85-168 11-86 (95)
333 cd05772 IgC_SIRP Signal-regula 98.1 5.3E-05 1.1E-09 53.4 9.1 79 180-258 3-92 (111)
334 cd05884 Ig2_Necl-3 Second immu 98.0 4.8E-05 1E-09 50.6 7.4 60 201-260 2-71 (83)
335 cd07697 IgC_TCR_gamma T cell r 97.9 0.0001 2.2E-09 50.3 8.6 72 284-357 12-85 (96)
336 cd04986 IgC_CH2 CH2 domain (se 97.9 3.7E-05 8E-10 52.5 6.1 83 274-358 4-90 (99)
337 cd00096 Ig Immunoglobulin doma 97.9 4.7E-05 1E-09 48.9 6.5 66 90-167 1-66 (74)
338 cd05719 Ig2_PVR_like Second im 97.9 0.0001 2.3E-09 50.3 8.1 72 289-363 16-88 (95)
339 cd07700 IgV_CD8_beta Immunoglo 97.9 5.4E-05 1.2E-09 53.4 6.8 69 284-355 2-93 (107)
340 TIGR00864 PCC polycystin catio 97.9 0.039 8.5E-07 58.9 28.8 281 32-373 1661-1953(2740)
341 cd05768 IgC_CH4 CH4 domain (fo 97.9 0.00011 2.5E-09 51.0 7.7 77 84-167 13-91 (102)
342 cd07699 IgC_L Immunoglobulin C 97.8 0.00014 2.9E-09 50.5 7.9 85 73-167 2-89 (100)
343 cd07698 IgC_MHC_I_alpha3 Class 97.8 0.0003 6.4E-09 48.1 9.2 80 72-167 2-83 (93)
344 TIGR00864 PCC polycystin catio 97.8 0.061 1.3E-06 57.6 29.0 284 35-372 1834-2128(2740)
345 KOG1480|consensus 97.8 1.3E-05 2.8E-10 72.7 2.8 186 71-271 23-219 (909)
346 cd05720 Ig_CD8_alpha Immunoglo 97.8 8E-05 1.7E-09 52.2 6.3 71 285-355 3-90 (104)
347 cd05712 Ig_Siglec_N Immunoglob 97.8 0.00012 2.6E-09 52.8 7.1 73 281-356 7-102 (119)
348 smart00407 IGc1 Immunoglobulin 97.7 0.00023 4.9E-09 46.5 7.4 58 201-258 2-71 (75)
349 PF08205 C2-set_2: CD80-like C 97.7 0.00021 4.6E-09 48.5 7.5 63 198-260 14-86 (89)
350 PF11465 Receptor_2B4: Natural 97.7 0.00096 2.1E-08 45.2 9.9 97 80-180 6-107 (108)
351 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00025 5.3E-09 48.3 7.2 76 289-367 16-92 (95)
352 cd07704 Ig2_Nectin-3-4_like Se 97.7 0.00056 1.2E-08 46.5 8.8 70 190-259 8-85 (97)
353 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00017 3.7E-09 49.4 6.0 66 194-259 10-87 (96)
354 PHA02982 hypothetical protein; 97.6 0.0028 6E-08 48.5 12.7 131 79-222 31-172 (251)
355 cd05769 IgC_TCR_beta T cell re 97.6 0.00019 4.1E-09 50.8 6.2 65 196-260 16-94 (115)
356 cd05847 IgC_CH2_IgE CH2 domain 97.6 0.00056 1.2E-08 46.6 8.3 72 86-167 13-86 (94)
357 PHA02914 Immunoglobulin-like d 97.6 0.031 6.7E-07 47.5 24.8 162 192-360 273-470 (500)
358 cd04981 IgV_H Immunoglobulin ( 97.6 0.00032 7E-09 50.3 7.5 73 280-355 4-97 (117)
359 cd05766 IgC_MHC_II_beta Class 97.6 0.0011 2.4E-08 45.3 9.6 70 85-167 12-83 (94)
360 PHA03271 envelope glycoprotein 97.6 0.016 3.6E-07 49.4 17.8 87 20-112 199-288 (490)
361 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00027 5.9E-09 43.6 5.6 59 288-367 6-64 (69)
362 cd05770 IgC_beta2m Class I maj 97.5 0.0015 3.2E-08 44.4 9.3 69 85-167 13-83 (93)
363 cd05767 IgC_MHC_II_alpha Class 97.5 0.0015 3.3E-08 44.5 9.3 70 85-167 13-84 (94)
364 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00042 9.2E-09 42.5 5.7 51 287-356 6-56 (65)
365 cd04986 IgC_CH2 CH2 domain (se 97.5 0.00025 5.5E-09 48.4 5.1 65 195-259 16-90 (99)
366 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.00092 2E-08 41.3 6.3 50 197-256 5-54 (69)
367 smart00406 IGv Immunoglobulin 97.4 0.0006 1.3E-08 45.2 6.2 61 290-353 1-81 (81)
368 cd07697 IgC_TCR_gamma T cell r 97.4 0.00096 2.1E-08 45.6 7.0 62 195-258 13-85 (96)
369 PF07654 C1-set: Immunoglobuli 97.4 0.0014 2.9E-08 43.8 7.5 71 85-168 6-78 (83)
370 PHA03270 envelope glycoprotein 97.4 0.0079 1.7E-07 51.6 13.2 126 233-360 180-311 (466)
371 PHA02633 hypothetical protein; 97.3 0.00079 1.7E-08 40.5 5.2 41 332-372 16-56 (63)
372 cd07692 Ig_CD3_epsilon Immunog 97.3 0.00054 1.2E-08 42.1 4.4 50 85-164 5-54 (65)
373 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.0028 6E-08 43.3 8.0 70 86-166 15-86 (95)
374 cd05719 Ig2_PVR_like Second im 97.2 0.0041 9E-08 42.5 8.3 62 198-259 15-83 (95)
375 PHA03269 envelope glycoprotein 97.2 0.0083 1.8E-07 52.2 11.6 125 235-361 289-421 (566)
376 PHA03273 envelope glycoprotein 97.2 0.015 3.3E-07 50.5 13.0 124 235-360 198-328 (486)
377 cd07704 Ig2_Nectin-3-4_like Se 97.2 0.0047 1E-07 42.0 8.1 72 83-168 12-85 (97)
378 PF08204 V-set_CD47: CD47 immu 97.0 0.0016 3.6E-08 46.5 5.2 86 284-370 23-121 (130)
379 KOG1480|consensus 97.0 0.0002 4.3E-09 65.3 0.5 164 190-361 31-210 (909)
380 PHA02982 hypothetical protein; 97.0 0.01 2.3E-07 45.5 9.1 172 193-370 34-234 (251)
381 cd07689 Ig2_VCAM-1 Second immu 97.0 0.0059 1.3E-07 41.3 7.0 72 285-358 12-87 (99)
382 cd07703 Ig2_Nectin-2_like Seco 97.0 0.011 2.3E-07 40.4 8.4 61 199-259 16-83 (95)
383 PHA02633 hypothetical protein; 96.9 0.0028 6E-08 38.2 4.7 38 144-182 18-55 (63)
384 cd05721 IgV_CTLA-4 Immunoglobu 96.9 0.011 2.3E-07 41.4 7.9 69 283-354 8-94 (115)
385 PF08204 V-set_CD47: CD47 immu 96.7 0.003 6.5E-08 45.2 4.3 87 85-179 25-119 (130)
386 cd07689 Ig2_VCAM-1 Second immu 96.6 0.012 2.7E-07 39.8 6.6 63 195-258 12-86 (99)
387 PHA02914 Immunoglobulin-like d 96.4 0.25 5.4E-06 42.3 14.3 134 82-223 274-420 (500)
388 PF02124 Marek_A: Marek's dise 96.3 0.39 8.4E-06 37.8 15.2 132 214-356 8-160 (211)
389 PHA03042 CD47-like protein; Pr 96.2 0.031 6.7E-07 45.0 7.9 74 284-369 27-105 (286)
390 PF07354 Sp38: Zona-pellucida- 95.8 0.052 1.1E-06 43.7 7.4 49 301-357 11-60 (271)
391 PHA03042 CD47-like protein; Pr 95.8 0.059 1.3E-06 43.5 7.6 71 195-269 28-103 (286)
392 KOG4597|consensus 95.6 0.019 4.1E-07 49.9 4.4 87 280-369 203-292 (560)
393 PHA03189 UL14 tegument protein 95.4 0.22 4.7E-06 40.9 9.5 96 79-177 59-166 (348)
394 PF03921 ICAM_N: Intercellular 95.4 0.5 1.1E-05 31.7 9.8 86 74-184 5-90 (91)
395 PF07354 Sp38: Zona-pellucida- 95.3 0.014 3.1E-07 46.8 2.7 49 2-50 11-59 (271)
396 PF11465 Receptor_2B4: Natural 95.3 0.072 1.6E-06 36.4 5.5 37 332-368 69-106 (108)
397 KOG0613|consensus 94.8 0.084 1.8E-06 52.1 6.8 158 193-358 344-517 (1205)
398 PF05790 C2-set: Immunoglobuli 94.6 0.48 1.1E-05 31.0 8.0 37 333-369 42-79 (80)
399 KOG4597|consensus 94.4 0.089 1.9E-06 45.9 5.2 93 74-179 198-291 (560)
400 PHA03283 envelope glycoprotein 93.9 4.7 0.0001 36.4 15.1 75 234-309 133-233 (542)
401 PHA03283 envelope glycoprotein 93.5 5.6 0.00012 35.9 15.4 77 143-220 133-234 (542)
402 PHA03282 envelope glycoprotein 93.4 5.4 0.00012 35.4 14.1 23 236-258 334-356 (540)
403 KOG1026|consensus 93.3 0.16 3.4E-06 48.0 5.3 161 192-372 201-366 (774)
404 KOG0613|consensus 93.3 0.39 8.5E-06 47.7 8.0 170 194-370 240-429 (1205)
405 PHA03286 envelope glycoprotein 93.1 6 0.00013 35.0 14.6 77 144-220 127-226 (492)
406 PF06328 Lep_receptor_Ig: Ig-l 93.1 0.51 1.1E-05 31.7 6.1 66 280-352 10-80 (89)
407 PHA02865 MHC-like TNF binding 93.1 0.61 1.3E-05 39.7 7.8 36 271-310 201-238 (338)
408 PF05790 C2-set: Immunoglobuli 92.9 1.6 3.5E-05 28.6 8.0 40 212-257 26-65 (80)
409 PF02480 Herpes_gE: Alphaherpe 92.7 0.26 5.7E-06 44.1 5.6 96 21-116 82-197 (439)
410 PF06328 Lep_receptor_Ig: Ig-l 92.6 1.1 2.4E-05 30.0 7.2 69 77-163 8-81 (89)
411 PHA03286 envelope glycoprotein 92.3 4.3 9.4E-05 35.8 12.0 76 234-309 126-225 (492)
412 cd05890 Ig2_Nectin-1_like Seco 91.9 0.87 1.9E-05 30.5 5.8 73 290-367 22-97 (98)
413 PF02480 Herpes_gE: Alphaherpe 91.2 0.41 8.9E-06 42.9 5.1 77 144-220 89-190 (439)
414 PHA03281 envelope glycoprotein 90.0 9.5 0.00021 34.7 12.0 76 234-309 297-394 (642)
415 PRK14081 triple tyrosine motif 90.0 18 0.00039 34.4 26.1 203 152-373 345-576 (667)
416 PF03921 ICAM_N: Intercellular 89.9 4.4 9.5E-05 27.3 9.0 81 277-373 7-90 (91)
417 PHA02865 MHC-like TNF binding 89.9 1.6 3.4E-05 37.3 7.1 21 200-220 216-238 (338)
418 PHA03189 UL14 tegument protein 89.9 4.4 9.6E-05 33.7 9.3 79 280-359 59-158 (348)
419 cd05890 Ig2_Nectin-1_like Seco 88.1 2.9 6.2E-05 28.2 5.9 58 200-257 22-86 (98)
420 PF02010 REJ: REJ domain; Int 86.2 1.9 4.2E-05 39.2 6.1 229 144-373 38-302 (440)
421 PF06832 BiPBP_C: Penicillin-B 85.2 9.1 0.0002 25.6 9.7 56 290-362 31-86 (89)
422 PHA03052 Hypothetical protein; 84.7 2.4 5.1E-05 26.3 3.9 35 281-315 5-42 (69)
423 PHA03281 envelope glycoprotein 84.2 34 0.00073 31.4 15.2 77 144-220 298-395 (642)
424 PHA03112 IL-18 binding protein 82.5 10 0.00022 27.8 7.0 79 84-164 35-116 (141)
425 KOG0200|consensus 82.2 29 0.00062 33.3 12.1 22 144-165 13-34 (609)
426 PHA03052 Hypothetical protein; 81.4 3.6 7.9E-05 25.5 3.7 32 80-111 5-39 (69)
427 PHA03240 envelope glycoprotein 77.0 5.4 0.00012 31.2 4.4 76 82-162 33-123 (258)
428 PF00801 PKD: PKD domain; Int 73.8 19 0.00042 22.5 6.7 60 283-361 6-68 (69)
429 smart00089 PKD Repeats in poly 71.1 25 0.00054 22.6 8.7 63 287-368 13-78 (79)
430 PF10430 Ig_Tie2_1: Tie-2 Ig-l 64.7 39 0.00084 22.4 7.5 72 289-360 16-90 (96)
431 KOG0200|consensus 56.7 45 0.00098 32.0 7.2 125 233-366 11-149 (609)
432 PF02124 Marek_A: Marek's dise 55.8 1.1E+02 0.0023 24.6 14.7 103 144-256 39-159 (211)
433 PF11049 KSHV_K1: Glycoprotein 54.7 30 0.00064 21.5 3.6 60 202-276 2-61 (71)
434 PHA03112 IL-18 binding protein 54.5 63 0.0014 23.9 5.9 78 286-363 36-125 (141)
435 PRK14081 triple tyrosine motif 52.1 2.3E+02 0.005 27.5 20.3 197 82-307 396-611 (667)
436 PF12988 DUF3872: Domain of un 50.2 99 0.0021 22.6 10.2 59 74-136 34-97 (137)
437 PF01688 Herpes_gI: Alphaherpe 43.7 23 0.0005 26.8 2.5 26 25-50 121-146 (161)
438 PF05955 Herpes_gp2: Equine he 43.0 1.5E+02 0.0033 22.8 10.9 65 293-357 112-179 (226)
439 PHA02935 Hypothetical protein; 40.3 41 0.00089 26.1 3.4 63 145-209 103-166 (349)
440 PHA03240 envelope glycoprotein 38.6 1.8E+02 0.0038 23.3 6.4 38 332-369 103-144 (258)
441 PHA03282 envelope glycoprotein 37.7 81 0.0018 28.5 5.1 23 333-355 123-145 (540)
442 PF01688 Herpes_gI: Alphaherpe 36.8 1.1E+02 0.0025 23.2 5.2 27 141-167 121-147 (161)
443 PF02440 Adeno_E3_CR1: Adenovi 36.5 40 0.00087 20.9 2.3 39 3-41 15-63 (63)
444 COG5475 Uncharacterized small 34.7 1E+02 0.0022 18.4 4.3 30 334-365 18-47 (60)
445 KOG1026|consensus 33.3 29 0.00063 33.7 2.0 75 282-371 201-275 (774)
446 PF12988 DUF3872: Domain of un 30.8 2.2E+02 0.0047 20.9 9.3 80 272-359 31-125 (137)
447 PF03174 CHB_HEX_C: Chitobiase 30.4 1.2E+02 0.0025 19.4 3.9 59 286-363 13-71 (75)
448 PHA02935 Hypothetical protein; 29.8 1.2E+02 0.0027 23.6 4.5 63 236-299 103-166 (349)
449 PF06832 BiPBP_C: Penicillin-B 25.1 2.1E+02 0.0046 18.9 8.1 54 200-261 31-84 (89)
450 PF03293 Pox_RNA_pol: Poxvirus 24.5 2.9E+02 0.0063 20.3 5.6 35 350-384 122-157 (160)
451 PF06214 SLAM: Signaling lymph 23.5 2.7E+02 0.0059 19.6 6.3 23 332-354 101-123 (126)
452 PHA03292 envelope glycoprotein 20.9 2.5E+02 0.0055 24.8 5.1 27 142-168 126-152 (413)
453 PHA03290 envelope glycoprotein 20.8 2.3E+02 0.005 24.5 4.8 37 146-183 131-167 (357)
No 1
>KOG3513|consensus
Probab=100.00 E-value=5.1e-46 Score=338.69 Aligned_cols=344 Identities=21% Similarity=0.309 Sum_probs=281.9
Q ss_pred CCCCCCcchhccccCCCCCC--CCCCCCceEEEEEeeecceEEEEEEEeeec-cchhHHHHHHHH--HhhhhcccCCCCe
Q psy16652 1 FIAPSPFDFVNRFQNTSTPW--DPSTQKPIRFFIHEVTGEKVTSVILLFKMS-VAGPSIIVALSF--LISLASSQRTPTI 75 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~-~~~~~~~~~~~~--~~~~~~~~~~p~~ 75 (384)
||.++|+|++|+|+++.+.- +...+..+.|.+.+|+.+|.+.|.|.+... .........+.+ .........+|.|
T Consensus 164 ~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i 243 (1051)
T KOG3513|consen 164 FPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKI 243 (1051)
T ss_pred CCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCcc
Confidence 78999999999999998775 566788999999999999999999998763 111111000101 1122233445665
Q ss_pred eeeCc-ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 76 SYISQ-EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 76 ~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
..... ......|+.|.|.|.+.|.|.+++.|.|.+.... .++... .....+|.|.+++.+
T Consensus 244 ~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~---------------~~r~~~----~~~~~vL~I~nv~~~ 304 (1051)
T KOG3513|consen 244 LVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP---------------PRRATY----SNYGKVLKIPNVQYE 304 (1051)
T ss_pred ccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC---------------Ccceee----eccccEEEecccCcC
Confidence 55444 5568899999999999999999999999887421 111111 233458999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---ee
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SI 231 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~ 231 (384)
|+|.|+|.+.|..+ .....+.|.|..+|.... .+....+..|+++.+.|.+.|.|.|+++|.+++.++..... ..
T Consensus 305 D~G~Y~C~AeN~~G-~~~~~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~ 382 (1051)
T KOG3513|consen 305 DAGEYECIAENSRG-SATHSGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYK 382 (1051)
T ss_pred CCeEEEEEEecccc-cceeeEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceE
Confidence 99999999997665 788899999999998875 46677889999999999999999999999999999887666 67
Q ss_pred EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec-CeEEecCCCc--ccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-PVITINRPRQ--GQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 232 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
...++|.|.+++..|+|.|.|.|+|..|.. ...+.|.|... |.+...+... .+..|..+.|.|...+.|.|.+.|.
T Consensus 383 i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 383 IDDGTLIISNVQESDSGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred EeCCEEEEEecccccCeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence 788999999999999999999999999986 67788888765 7777666553 6788999999999999999999999
Q ss_pred ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG 374 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 374 (384)
+++..+.+++++.+. .+++|.|.+++.+|+|.|+|.|+|..|..+.+..|.|++++..
T Consensus 462 k~~~~~~~~~r~~i~--------edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri 519 (1051)
T KOG3513|consen 462 KGGEKLLQSGRIRIL--------EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRI 519 (1051)
T ss_pred cCCcccccCceEEEC--------CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceE
Confidence 999988888888876 4889999999999999999999999999999999999988543
No 2
>KOG3513|consensus
Probab=100.00 E-value=7.1e-42 Score=311.80 Aligned_cols=348 Identities=22% Similarity=0.300 Sum_probs=273.9
Q ss_pred CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
+|-|.|.|.+++-+-.... -....-+..|.|.+++.+|+|.|.|.+.+..+..... .......+|.+...++
T Consensus 268 ~P~P~i~W~k~~g~~~~~r-~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~-------~~v~v~a~P~w~~~~~ 339 (1051)
T KOG3513|consen 268 NPTPQIKWRKVDGKPPPRR-ATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHS-------GHVTVYAPPYWLQKPQ 339 (1051)
T ss_pred CCCCcEEEEeCCCCCCCcc-eeeeccccEEEecccCcCCCeEEEEEEecccccceee-------EEEEEecCchhhcccc
Confidence 4789999999975422111 1223456799999999999999999999875532221 1123567889999999
Q ss_pred ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
+..+..|++++|.|.+.+.|.+.+.|++++..+... ....++.+... +|.|.+++.+|+|.|+
T Consensus 340 d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~-----------~r~~~~~i~~g------~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 340 DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPA-----------ERDPRYKIDDG------TLIISNVQESDSGVYQ 402 (1051)
T ss_pred eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCcc-----------CCCcceEEeCC------EEEEEecccccCeEEE
Confidence 999999999999999999999999999998763211 12234555442 7999999999999999
Q ss_pred EEEEEccCcceeeeEEEEEecC-CccccCCC-ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEE
Q psy16652 161 CEVIISLNNKVSAEVELIVRRP-PIISDNST-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNIL 237 (384)
Q Consensus 161 C~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l 237 (384)
|.+.|. .+.....+.|.|... |.+..... ....+..|..+.|.|...+.|.+.+.|.++++.+....+. ...+++|
T Consensus 403 C~A~Nk-~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL 481 (1051)
T KOG3513|consen 403 CIAENK-YGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTL 481 (1051)
T ss_pred eeeecc-cceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcE
Confidence 999854 456777788888765 55554333 3356889999999999999999999999998844444443 3478899
Q ss_pred EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEec
Q psy16652 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIM 315 (384)
Q Consensus 238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~ 315 (384)
.|.+++.+|+|.|+|.|+|..|.. ..+..|.|+.++.+...+....+..|+.+.|.|.+...+.. .|.|.+||..+.
T Consensus 482 ~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id 560 (1051)
T KOG3513|consen 482 EISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPID 560 (1051)
T ss_pred EecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhh
Confidence 999999999999999999999997 78899999999999998888999999999999999765544 799999999885
Q ss_pred CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
.......-... .....+.|+|.+++.+|+|.|.|.|.-..-+.++...|.|.++|.+|+.
T Consensus 561 ~~~~~~~~~~~--~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~ 620 (1051)
T KOG3513|consen 561 FNPDGDHFEIN--DGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPD 620 (1051)
T ss_pred ccCCCCceEEe--CCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCc
Confidence 54321111111 1112267999999999999999999999999999999999999988763
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.6e-35 Score=269.51 Aligned_cols=336 Identities=24% Similarity=0.297 Sum_probs=262.5
Q ss_pred CCCCcchhccccCCCC-CCCCCCCCceEEEEEeeec-----ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652 3 APSPFDFVNRFQNTST-PWDPSTQKPIRFFIHEVTG-----EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS 76 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~-----~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 76 (384)
+.+++|-+++.+..+. ...+....+++|.|.++-. -|.|.|.|.++...-+... .-.........+.+.
T Consensus 70 ~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~-----Sr~a~v~~a~~~~f~ 144 (1381)
T KOG4221|consen 70 SVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSIL-----SRTAKVALAGLADFA 144 (1381)
T ss_pred CeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEEEEEEccccceee-----cceEEEEecccCccc
Confidence 4678999776555542 2344457899999999988 8999999998875111111 001111233455677
Q ss_pred eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
..+.+..+..|+++.|.|.+.+.+.+.+.|.+++..+ ..++|+.... +..|.|.+++++|.
T Consensus 145 ~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl--------------~~~~r~i~lp-----sG~L~I~~~qp~d~ 205 (1381)
T KOG4221|consen 145 LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL--------------PLDSRVIVLP-----SGALEISGLQPSDT 205 (1381)
T ss_pred cCccceeEecCCcEEEEEEEcCccCceeEEecccccc--------------cCCCcEEEcC-----CCcEEecccccCCC
Confidence 7788888999999999999988777789999987642 2334444333 23699999999999
Q ss_pred eeEEEEEEEccCcceeeeEEEEEecCCc-----cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee
Q psy16652 157 GIYKCEVIISLNNKVSAEVELIVRRPPI-----ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI 231 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~ 231 (384)
|.|+|.+.+......+....|.|...+. .....+....+.+|+++.|.|.+.+.|.|.|.|.+++..+.....+.
T Consensus 206 g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~ri 285 (1381)
T KOG4221|consen 206 GEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRI 285 (1381)
T ss_pred ceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEE
Confidence 9999999876666667788888873332 12244667788999999999999999999999999998877664332
Q ss_pred --EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE
Q psy16652 232 --YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309 (384)
Q Consensus 232 --~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 309 (384)
...+.|.|.+++..|+|.|+|.|+|..... .....|+|..+|.+...+....+.++.++.+.|.+.|.|.|.+.|++
T Consensus 286 vl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k 364 (1381)
T KOG4221|consen 286 VLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK 364 (1381)
T ss_pred EEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe
Confidence 235689999999999999999999954443 56688889999999888888888999999999999999999999999
Q ss_pred CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
||..+..++.+.+.. ...|.|..+-..|.|.|.|.++|..|...+...|.+..+
T Consensus 365 Ngd~~ipsdy~ki~~--------~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~ 418 (1381)
T KOG4221|consen 365 NGDRIIPSDYFKIVG--------GGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQ 418 (1381)
T ss_pred cCcccCcccceEecC--------CCCcEEEEEecccchhhhhhhccCcccccchhhheeccC
Confidence 999888777777653 334999999999999999999999999998888865554
No 4
>KOG4194|consensus
Probab=100.00 E-value=3.5e-33 Score=237.92 Aligned_cols=293 Identities=23% Similarity=0.379 Sum_probs=232.4
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
...+|.|...|..+.+..|+.++|+|.+.+ ..+..+.|.+++.... . .............|.....+...-...|
T Consensus 500 DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~-r--v~ved~a~~~~q~r~~~~~e~~~~~~~L 576 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQP-R--VDVEDFATFLSQNRNGTFGEREEYTAIL 576 (873)
T ss_pred CCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCc-c--cchhcchhhhhhhccCccchhhhhhhee
Confidence 445678888899999999999999999976 3567899999876421 1 1111100000111100011112233469
Q ss_pred EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~ 226 (384)
.+.+|+..|.|.|+|.++|..+...+..+++.|...|.+.. .|....+..|+.+.|.|.+.|.|.|++.|.++|....+
T Consensus 577 ~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFP 655 (873)
T KOG4194|consen 577 HLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFP 655 (873)
T ss_pred eeeeeecccCceEEEEEecccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcceeehhcCCCCCc
Confidence 99999999999999999999998999999999999888874 47788899999999999999999999999999876433
Q ss_pred cCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652 227 TGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP 301 (384)
Q Consensus 227 ~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 301 (384)
... ....+..+.|.++..+|.|.|+|.|.|..|.. +...++.|...|.+.++-....+..|+.+.|.|.+.+.|
T Consensus 656 AA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~ 734 (873)
T KOG4194|consen 656 AARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAP 734 (873)
T ss_pred hhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCC
Confidence 321 12246789999999999999999999999986 889999999999998888888899999999999999988
Q ss_pred C-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 302 P-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 302 ~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
. |.+.|+++++++.-.++..+.. .+.-|.+.....+|+|.|+|...|..|.-...+.+.+...+.
T Consensus 735 a~pr~~W~k~d~pil~t~rh~f~d-------~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 735 ADPRLEWFKEDKPILITERHTFPD-------GDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred CCccccccCCCCceEEeecccCCC-------CCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 8 8999999999987777655543 455678888999999999999999999998888887766543
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.98 E-value=2e-29 Score=214.07 Aligned_cols=268 Identities=16% Similarity=0.226 Sum_probs=179.1
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (384)
.+..+........+.+|+.+.|.|.. .+.+.+.++|+|++.... ..+.+ .....
T Consensus 25 ~c~~~~~~~~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----------------~~~~~-----~~g~~ 83 (326)
T PHA02785 25 ECIDKGQYFASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND----------------RIIPI-----DNGSN 83 (326)
T ss_pred CchhcccccchhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----------------eEEEc-----cCCce
Confidence 34444444455567899999999997 456778999999864210 00000 01124
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC--ccccCCCceEEeecCceEEEEEEe-----cccCCCeEEEE
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP--IISDNSTRSVIVSEGQTVYLYCYA-----NGFPAPTISWR 218 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~v~W~ 218 (384)
|.|.++..+|+|.|+|.++|.. +.....+.|.|.... .+.. ......+.+|..+.|.|.. .+.+.+.+.|+
T Consensus 84 l~i~~~~~~DsG~Y~C~a~N~~-g~~~~s~~L~V~~~~~~~~~~-~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~ 161 (326)
T PHA02785 84 MLILNPTQSDSGIYICITKNET-YCDMMSLNLTIVSVSESNIDL-ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWS 161 (326)
T ss_pred EEEcccCcccCeEEEEEEECCC-cceEEEEEEEEEecCCCccce-eeccceecccCcEEEECCChhhcccCCCCceEEEc
Confidence 7899999999999999998654 445566677665432 2211 1223446789999999972 35678899998
Q ss_pred eCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce---eeEEEEEEEe---cCeEEecCCCcccccCCcEE
Q psy16652 219 RDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM---KRNIAVEVEF---APVITINRPRQGQALQYDAI 292 (384)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~ 292 (384)
++.. +.........++.|.|.+++.+|+|.|+|.+.|..+... ...+.|.|.. +|.+ ..+....+..|+.++
T Consensus 162 k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~ 239 (326)
T PHA02785 162 GHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLT 239 (326)
T ss_pred cCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEE
Confidence 7542 222111222356899999999999999999999776542 2334455542 3433 334556677899999
Q ss_pred EEEEEeccCCC---eEEEEECCEEecCCC-----ceeeeeee---ccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 293 LECHVEAYPPP---AIVWIKDGVQIMNNQ-----HYSVSHFA---TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 293 l~C~~~~~p~~---~v~W~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
|.|.+.|.|.+ .+.|++||..+...+ ++...... .........|+|.+++.+|.|.|+|.|.|..|...
T Consensus 240 L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 240 IACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 99999998864 799999999885432 11111100 00111246799999999999999999999986554
Q ss_pred EE
Q psy16652 362 KE 363 (384)
Q Consensus 362 ~~ 363 (384)
..
T Consensus 320 ~~ 321 (326)
T PHA02785 320 TV 321 (326)
T ss_pred ee
Confidence 43
No 6
>KOG4222|consensus
Probab=99.97 E-value=7.2e-31 Score=238.14 Aligned_cols=338 Identities=21% Similarity=0.301 Sum_probs=256.1
Q ss_pred CCCCCcchhccccCCCCC--CCCCCCCceEEEEEeee-----cceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCC
Q psy16652 2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIHEVT-----GEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPT 74 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~-----~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 74 (384)
|.++++||+++-+.+... ..+-....++|.+..+. ..|.|.|+|...+........ ...+......-.
T Consensus 59 ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr-----~a~L~vavlrdd 133 (1281)
T KOG4222|consen 59 PPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSR-----GASLIVAVLRDD 133 (1281)
T ss_pred CCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeec-----CceEEEEEechh
Confidence 678999999984433322 23334455666665543 339999999988764332221 111112223335
Q ss_pred eeeeCcceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
+.+.+....+..|+.+.|.|.- .+.+.+.+.|.|+++.+. .....++.+.. ...|.|.+++.
T Consensus 134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~------------~~~~~~~~lis-----gG~LlIsnvrk 196 (1281)
T KOG4222|consen 134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD------------HYDVPIIALIS-----GGNLLISNVRK 196 (1281)
T ss_pred cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccc------------cccceeEEEec-----CCcEEEecccc
Confidence 6667778888999999999986 456888999999988642 00111221111 22599999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR 233 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~ 233 (384)
.|+|.|.|.+.|..+...+...+|.|+++|.+.. .+....+..|..+.+.|.+.|.|.+++.|.+++..+.........
T Consensus 197 sD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~-rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~ 275 (1281)
T KOG4222|consen 197 SDEGTYACVATNMVGERESIPARLSVQEKPWFWK-RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILD 275 (1281)
T ss_pred CCCceeeeeecccccccccccceeeeccCCcccc-ccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeee
Confidence 9999999999988888889999999999998874 366778899999999999999999999999977766655444444
Q ss_pred c-cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCE
Q psy16652 234 G-NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV 312 (384)
Q Consensus 234 ~-~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 312 (384)
. .+|.|.+++..|.|.|.|.+.|..|.. .....++|+.+|.+...+....+..|..++|.|.+.|+|.|.+.|.+.|.
T Consensus 276 d~qtl~i~r~tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~ 354 (1281)
T KOG4222|consen 276 DTQTLRIDRVTPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGS 354 (1281)
T ss_pred ccccccccccCCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCc
Confidence 4 799999999999999999999999886 77889999999999988888899999999999999999999999999774
Q ss_pred Eec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 313 QIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 313 ~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
..- .+.+..+. ...+|+|.+++..|.|.|.|...+..|+......+.+...
T Consensus 355 q~llf~~~p~~~~~r~svs--------~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 355 QDLLFSASPPSSNGRGSVS--------PTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred ceecccCCCCCcCccceec--------CCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 321 11222222 3458999999999999999999998888776666655554
No 7
>KOG4221|consensus
Probab=99.97 E-value=2.4e-28 Score=223.26 Aligned_cols=284 Identities=21% Similarity=0.337 Sum_probs=219.3
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
..+.+++.+. .+|.++.|.|..... ....+.|.+++..+.. ..+.+.+ .-.+.+|.|.+
T Consensus 42 ~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e------------~~d~~~~-----~LsNgSl~i~~ 102 (1381)
T KOG4221|consen 42 LQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNE------------VYDDRRQ-----LLSNGSLYISS 102 (1381)
T ss_pred ceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhh------------hhhhHHh-----hccCCceeEee
Confidence 3455556543 889999999998543 3779999987754211 1112211 22334688888
Q ss_pred cCC-----CCCeeEEEEEEEc-cCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652 151 IQE-----TDAGIYKCEVIIS-LNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA 224 (384)
Q Consensus 151 ~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~ 224 (384)
+.. -|.|.|+|.+... .+...+..+.|.+...+.+... .....+..|+++.|.|.+++.+.+.+.|.+++.++
T Consensus 103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl 181 (1381)
T KOG4221|consen 103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPL 181 (1381)
T ss_pred ecccccccccCceEEEEEEccccceeecceEEEEecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecccccc
Confidence 876 8899999999855 3345677788888776666543 45567899999999999999888899999999866
Q ss_pred cccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC------eEEecCCCcccccCCcEEEEEEE
Q psy16652 225 LSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP------VITINRPRQGQALQYDAILECHV 297 (384)
Q Consensus 225 ~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~ 297 (384)
...... ...++.|.|.+++..|.|.|+|.+++......+....|.|...| .|...+....+..|+++.|.|.+
T Consensus 182 ~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv 261 (1381)
T KOG4221|consen 182 PLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV 261 (1381)
T ss_pred cCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence 655543 34678999999999999999999999877766777888887444 24456677888999999999999
Q ss_pred eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 298 ~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
.|.|.|.|.|.+||..+..+. +.+.. ...+.|.|.+++..|+|.|+|.|+|..-+.++..+|.|..+|..+..
T Consensus 262 s~~p~p~v~Wlrng~~i~~ds-~rivl------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~ 334 (1381)
T KOG4221|consen 262 SGVPKPSVKWLRNGEKISVDS-YRIVL------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKA 334 (1381)
T ss_pred cCCCCCceEEeeCCeeeeecc-eEEEE------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCC
Confidence 999999999999999997665 33322 14678999999999999999999998888888999999999877766
Q ss_pred CCcccc
Q psy16652 378 FPIFYA 383 (384)
Q Consensus 378 ~~~~~~ 383 (384)
+-.++|
T Consensus 335 p~~l~A 340 (1381)
T KOG4221|consen 335 PTTLVA 340 (1381)
T ss_pred Ccceee
Confidence 655554
No 8
>KOG4222|consensus
Probab=99.97 E-value=1.7e-29 Score=229.38 Aligned_cols=338 Identities=23% Similarity=0.331 Sum_probs=257.7
Q ss_pred CCCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652 1 FIAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS 79 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (384)
||-+.+.|.++..+..-.. -.+..-.++.|.|.++...|+|+|.|..++..+.......- .....+|.+...+
T Consensus 159 hpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~------lsv~e~P~f~~rp 232 (1281)
T KOG4222|consen 159 HPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPAR------LSVQEKPWFWKRP 232 (1281)
T ss_pred CCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccce------eeeccCCcccccc
Confidence 4667889999877766111 11222356789999999999999999988754433332111 2345788899999
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
....|.+|..+.+.|.+.+.|.+.+.|.+.+.. ....||.+..+. .+|.|.+++..|.|.|
T Consensus 233 ~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~---------------~P~~ry~i~~d~----qtl~i~r~tp~deg~y 293 (1281)
T KOG4222|consen 233 KDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS---------------LPRSRYSILDDT----QTLRIDRVTPTDEGTY 293 (1281)
T ss_pred ccceeecccccccccccCCCCCCceeeeccCCC---------------CCccceeeeecc----ccccccccCCCcccce
Confidence 999999999999999999999999999996554 456777777642 3699999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc---------Cce
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST---------GGS 230 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---------~~~ 230 (384)
.|.+.+.. +.......++|..+|.+... +....+..|..++|.|.+.+.|.+.+.|.+.+...... ...
T Consensus 294 ~C~a~n~v-G~l~asa~ltV~apP~f~kk-p~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~s 371 (1281)
T KOG4222|consen 294 VCPAENLV-GGLEASATLTVQAPPSFGKK-PRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGS 371 (1281)
T ss_pred eeeccccc-cccccccceEEecCcccccc-cCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccce
Confidence 99998655 44677778899998887754 44455778999999999999999999999987543221 111
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE------ecCeEEecCCCcccccCCcEEEEEEEeccCCCe
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE------FAPVITINRPRQGQALQYDAILECHVEAYPPPA 304 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 304 (384)
+...+.|.|.+++..|.|.|.|...+..+....+....++. -+|.+...+.+....++..+.|.|.+.+.|.+.
T Consensus 372 vs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~ 451 (1281)
T KOG4222|consen 372 VSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPN 451 (1281)
T ss_pred ecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCC
Confidence 22345899999999999999999877666554333333322 244555566777888899999999999999999
Q ss_pred EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
+.|.++|..+...+..... .....|+|.+....|.|.|+|.|.+..|...-+..|.|.+.-
T Consensus 452 i~wl~dg~~v~~~d~~~s~-------~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~ 512 (1281)
T KOG4222|consen 452 ISWLKDGCNVMNPDSRISQ-------QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAG 512 (1281)
T ss_pred chhhhcccccccCCcccce-------eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcC
Confidence 9999999887655532222 246789999999999999999999999998888888776653
No 9
>KOG4194|consensus
Probab=99.93 E-value=1.3e-24 Score=186.13 Aligned_cols=227 Identities=19% Similarity=0.303 Sum_probs=175.8
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccE
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPV 104 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v 104 (384)
.-..-|.+.||+.+|+|.|.|.+++.++..+..- .-......|.++..|.+..+..|+.+.|.|.++|.|.+.+
T Consensus 571 ~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk------~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeI 644 (873)
T KOG4194|consen 571 EYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQK------AKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEI 644 (873)
T ss_pred hhhheeeeeeeecccCceEEEEEecccCcchhhe------eEEEeeccCccccCcccceeecccceeeeeeccCCCCcce
Confidence 3456789999999999999999999877655421 1112345789999999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 105 IWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 105 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
.|.+.+...-+ ...+.|..+..+.+ .+.|.|++.+|.|.|+|.+++. .|..+....|.|.+.|.
T Consensus 645 awqkdggtdFP-----------AA~eRRl~Vmpedd----~f~Itnvk~eD~GiYtC~A~n~-AG~isanAtL~V~e~p~ 708 (873)
T KOG4194|consen 645 AWQKDGGTDFP-----------AARERRLHVMPEDD----VFFITNVKIEDQGIYTCTAQNV-AGQISANATLTVLETPS 708 (873)
T ss_pred eehhcCCCCCc-----------hhhhheeeecCCCC----EEEEecccccccceeEEeeecc-ccceeeceEEEEecCCc
Confidence 99998764211 12345555554322 6999999999999999999854 56678888999998887
Q ss_pred cccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCcee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 185 ISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 185 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
.... .....+..|+++.|.|.+.+.|. |++.|+|+++++....+.. ..+.-|.+.+...+|+|.|+|.+.+..+..
T Consensus 709 f~~P-L~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 709 FSIP-LEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred cccc-ccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccce
Confidence 7643 55667899999999999998777 8999999999887655333 234578888999999999999999988875
Q ss_pred eeeEEEEEEEecCe
Q psy16652 262 MKRNIAVEVEFAPV 275 (384)
Q Consensus 262 ~~~~~~l~v~~~p~ 275 (384)
...+.+.+...+.
T Consensus 788 -~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 788 -RIHICLLVYQKKK 800 (873)
T ss_pred -eeEEEEEEeecCC
Confidence 4444444444443
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.93 E-value=7.5e-25 Score=186.24 Aligned_cols=229 Identities=20% Similarity=0.260 Sum_probs=148.1
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
|.+.+.|++|+..... ......+..|.|.+++.+|+|.|+|.+.+..........+ .. ....++.+...+.+
T Consensus 59 p~~~i~W~K~g~~~~~---~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L----~V-~~~~~~~~~~~~~~ 130 (326)
T PHA02785 59 NILDILWEKRGADNDR---IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNL----TI-VSVSESNIDLISYP 130 (326)
T ss_pred CCceEEEEECCCccce---EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEE----EE-EecCCCccceeecc
Confidence 4577999999632110 0111234468999999999999999998754221111000 00 01122333333444
Q ss_pred eeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 82 QIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
..+.+|+.+.|.|.. .+.+.+.++|++... ....++.... +..|.|.+++.+|+
T Consensus 131 ~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~----------------~~~~r~~~~~-----~~~L~i~~v~~~d~ 189 (326)
T PHA02785 131 QIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR----------------LRNKRLKQRT-----PGIITIEDVRKNDA 189 (326)
T ss_pred ceecccCcEEEECCChhhcccCCCCceEEEccCCc----------------cCCcceEecC-----CCeEEEeecChhhC
Confidence 557899999999972 345778999987421 1223333321 23799999999999
Q ss_pred eeEEEEEEEccCcce---eeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCC---eEEEEeCCCccccc
Q psy16652 157 GIYKCEVIISLNNKV---SAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALST 227 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~ 227 (384)
|.|+|.+.+..++.. +..+.|.|.. +|.+ ..+....+..|+.+.|.|.+.+.|.+ .+.|++++..+...
T Consensus 190 G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~--~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~ 267 (326)
T PHA02785 190 GYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM--QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEED 267 (326)
T ss_pred eEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee--cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCc
Confidence 999999997655432 3344555543 2222 22455667789999999999987754 79999998765332
Q ss_pred C----ce-------------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 228 G----GS-------------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 228 ~----~~-------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
. .. ......|.|.+++.+|+|.|+|.|.|..+..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 268 DEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred CCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 1 01 0113579999999999999999999977543
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.88 E-value=2.7e-21 Score=154.16 Aligned_cols=154 Identities=18% Similarity=0.333 Sum_probs=115.5
Q ss_pred ceEEeecCceEEEEEEecccC-----------CCeEEEEeCCCcccc--c-----------CceeEeccEEEEcCCCCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP-----------APTISWRRDNSAALS--T-----------GGSIYRGNILKIPNITKTD 246 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~-----------~~~v~W~~~~~~~~~--~-----------~~~~~~~~~l~i~~~~~~d 246 (384)
....+.+|+++.|.|.+.+++ .+++.|++.+....- . .....++..|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 446688999999999986643 348999998753210 0 0111235689999999999
Q ss_pred CeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCCCcee
Q psy16652 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNNQHYS 321 (384)
Q Consensus 247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~ 321 (384)
+|.|+|.+.|..+.. ...+.|.|..++ ....+.+|+.+.|.|.+.+ .|.|++.|+++|.++..+.++.
T Consensus 110 sG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~ 182 (227)
T PHA02826 110 EGIYICTISSGNICE-ESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182 (227)
T ss_pred CEEEEEEEEECCcce-EEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence 999999999977654 566666664322 2345678999999999853 4678999999999997666655
Q ss_pred eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
+.. ....|.|.+++.+|+|.|+|.|+...+
T Consensus 183 ~~~-------~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 183 LRN-------NNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred EeC-------CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 432 356899999999999999999998753
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.87 E-value=1e-20 Score=150.82 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=115.6
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecC-----------CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYA-----------DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD- 138 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (384)
.+........+..+.+|++|.|.|.+.+. ..+.+.|+|.+.. ..+...+. ... ...+...
T Consensus 21 ~c~~~~~~~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~-----~~v~~~~~-~~~--~~~i~~~~ 92 (227)
T PHA02826 21 YCKYRGGDLTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSL-----AFVRDSGA-RTK--IKKITHNE 92 (227)
T ss_pred cchhhCcCcceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeE-----EEEEcCCC-ccc--cccccccc
Confidence 34344444566778999999999997542 3458999997532 00100000 000 0000000
Q ss_pred CCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-----ccCCC
Q psy16652 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-----GFPAP 213 (384)
Q Consensus 139 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~~~ 213 (384)
.......|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..++ ....+.+|+.+.|.|.+. +.|.|
T Consensus 93 ~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~-~~~~~~i~L~V~~~~-------~~~~~~~G~~v~L~C~~~~~~~~~~p~p 164 (227)
T PHA02826 93 IGDRSENLWIGNVINIDEGIYICTISSGN-ICEESTIRLTFDSGT-------INYQFNSGKDSKLHCYGTDGISSTFKDY 164 (227)
T ss_pred eecCCCeEEECCCChHHCEEEEEEEEECC-cceEEEEEEEEecCC-------ccceEecCCCEEEEeeCCCCccccCCCc
Confidence 01224579999999999999999999744 556667777774321 234567899999999985 24578
Q ss_pred eEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 214 TISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 214 ~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
++.|++++..+........ .+..|.|.+++.+|+|.|+|.+....
T Consensus 165 ~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 165 TLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred eEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 9999999988765444332 34589999999999999999999753
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.79 E-value=1.9e-18 Score=119.64 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=83.1
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|.+...+....+..|+.+.|.|.+.|.|++.+.|+++|..+..+.++.+... ...+.|+|.++..+|+|.|+|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~-----~~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENT-----ENSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEec-----CCeeEEEECCCChhhCEEEEEEE
Confidence 4455566677889999999999999999999999999999987766554421 13578999999999999999999
Q ss_pred EeCCcceEEEEEEEEeeeecCC
Q psy16652 354 ANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
.|..|...+++.|.|.++|.+|
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EcCCCceeEEEEEEEecCCCCC
Confidence 9999999999999999998665
No 14
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.73 E-value=3.9e-17 Score=110.94 Aligned_cols=88 Identities=22% Similarity=0.352 Sum_probs=74.8
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+... ....|.|.+++.+|.|.|+|.
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~---------~~~~L~I~~v~~~D~G~Y~C~ 71 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM---------SGAVLKIFNIQPEDEGTYECE 71 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec---------CCCEEEECcCChhhCEEEEEE
Confidence 46677777788889999999999999999999999999987755433221 346799999999999999999
Q ss_pred EEeCCcceEEEEEEEEe
Q psy16652 353 AANKYGSAQKEIELFDR 369 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~ 369 (384)
|.|..|+...++.|.|+
T Consensus 72 A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 72 AENIKGKDKHQARVYVQ 88 (88)
T ss_pred EEcCCCceEEEEEEEEC
Confidence 99999999999998874
No 15
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.72 E-value=1.5e-16 Score=107.91 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=71.0
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+.....+. ...+.|.|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~-~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGD-EVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCC-cEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 678999999999999999999999888544 344443322222 235789999999999999999999999999999999
Q ss_pred EEeeeecCC
Q psy16652 367 FDRETQTGD 375 (384)
Q Consensus 367 ~v~~~~~~~ 375 (384)
.|..+|.+|
T Consensus 80 ~V~~~P~~P 88 (88)
T cd05735 80 TVQEPPDPP 88 (88)
T ss_pred EEeCCCCCC
Confidence 999887654
No 16
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.70 E-value=2.3e-16 Score=109.20 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=70.8
Q ss_pred CCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 281 PRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
....+.+|+++.|.|.+.| .|+|.+.|+++|.++.......+...........+.|.|..+..+|+|.|+|.|+|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3456788999999999999 888899999999999755443222111011123578999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16652 360 AQKEIELFDR 369 (384)
Q Consensus 360 ~~~~~~l~v~ 369 (384)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
No 17
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.69 E-value=2.3e-16 Score=103.69 Aligned_cols=74 Identities=30% Similarity=0.500 Sum_probs=64.4
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
+|+.+.|.|.+.|.|.|.+.|+++|..+....+.... ..++|.|.+++.+|.|.|+|.|.|..|+...++.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL--------SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc--------cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 5789999999999999999999999988765544332 35689999999999999999999999999999888
Q ss_pred EE
Q psy16652 367 FD 368 (384)
Q Consensus 367 ~v 368 (384)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 75
No 18
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.69 E-value=2.1e-16 Score=102.73 Aligned_cols=73 Identities=32% Similarity=0.481 Sum_probs=64.6
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+. .+++|.|.+++.+|.|.|+|.|+|..|+...+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW--------DDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc--------CCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 578999999999999999999999988776666543 356899999999999999999999999999999887
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 5
No 19
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.68 E-value=6.6e-16 Score=106.19 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
|....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ----GKYASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC----CCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence 44556789999999999999999999999999999877666554211 12357999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16652 360 AQKEIELFD 368 (384)
Q Consensus 360 ~~~~~~l~v 368 (384)
....+.|.|
T Consensus 84 ~~~~~~v~v 92 (92)
T cd05737 84 ETVDVTVSV 92 (92)
T ss_pred ceEEEEEeC
Confidence 999988875
No 20
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.68 E-value=6.7e-16 Score=106.24 Aligned_cols=89 Identities=17% Similarity=0.364 Sum_probs=76.1
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+..|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+... ...+.|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITST-----EYKSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEc-----CCeeEEEECCCCcccCEeEEEE
Confidence 56676777788899999999999999999999999999998877666554421 1346899999999999999999
Q ss_pred EEeCCcceEEEEEE
Q psy16652 353 AANKYGSAQKEIEL 366 (384)
Q Consensus 353 a~n~~g~~~~~~~l 366 (384)
|+|..|..+.++.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999999988876
No 21
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.67 E-value=1e-15 Score=106.36 Aligned_cols=96 Identities=23% Similarity=0.357 Sum_probs=70.2
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 46666555555555689999999999999999999999877643321100000000111246799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy16652 353 AANKYGSAQKEIELFD 368 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v 368 (384)
|.|..|...+++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999998875
No 22
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.66 E-value=9.7e-16 Score=99.93 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=60.3
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.+.|.|.|.+.|++++..+..+ +++.+.... ....+|.|.+++.+|+|.|+|.|.|..|+...+..|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~----~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN----SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC----CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 468999999999999999999998743 444433211 11247999999999999999999999999999988875
No 23
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.66 E-value=8e-16 Score=97.35 Aligned_cols=66 Identities=32% Similarity=0.463 Sum_probs=56.9
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.|.|.+.|+|.|.+.|++||..+.... ..+.|.|.++..+|+|.|+|.|+|..|..++++.|.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 3689999999999999999999886321 35689999999999999999999999988877777653
No 24
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.66 E-value=1.1e-15 Score=108.10 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=75.2
Q ss_pred EecCeEEecCCCccc----ccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecC-CC
Q psy16652 271 EFAPVITINRPRQGQ----ALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIE-RR 344 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~ 344 (384)
.++|.+...+....+ ..|..+.|.|.+.|.|.+.+.|+++|..+... .++....... .....+.|+|.++. .+
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~-~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHT-GTVHTSILTIINVSAAL 80 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeecc-CccceeEEEECcCCccC
Confidence 456666554442121 24578999999999999999999999988643 3443332222 12234779999987 58
Q ss_pred CCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 345 QFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 345 d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|.|+|.|.|..|....++.|.|..+|
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999999998776
No 25
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.66 E-value=1.4e-15 Score=98.86 Aligned_cols=71 Identities=28% Similarity=0.637 Sum_probs=61.2
Q ss_pred cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.+.|.|.+.|.|.|.+.|+++|..+....++.+. ....|.|.+++.+|+|.|+|.|.|..|+.++++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~--------~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV--------KEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE--------ecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 3689999999999999999999988766655443 2456889999999999999999999999999998875
No 26
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.66 E-value=1.4e-15 Score=105.53 Aligned_cols=81 Identities=26% Similarity=0.544 Sum_probs=68.4
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
..+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++... ...+.|+|.+++.+|.|.|+|.|.|..|..+
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN-------EDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe-------CCCCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 45788999999999999999999999999988655 333221 1345799999999999999999999999999
Q ss_pred EEEEEEEee
Q psy16652 362 KEIELFDRE 370 (384)
Q Consensus 362 ~~~~l~v~~ 370 (384)
.++.|.|..
T Consensus 86 ~~~~L~V~~ 94 (95)
T cd05730 86 AEIHLKVFA 94 (95)
T ss_pred EEEEEEEEe
Confidence 999998864
No 27
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.66 E-value=1.2e-15 Score=99.70 Aligned_cols=76 Identities=17% Similarity=0.331 Sum_probs=60.1
Q ss_pred EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.|.|.+.|+|.|+++|++||.++..+.+..............+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999999987665433221111112356799999999999999999999999999888764
No 28
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.66 E-value=2e-15 Score=103.96 Aligned_cols=90 Identities=29% Similarity=0.540 Sum_probs=79.2
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+..+.++.+.... ....|.|.+++.+|+|.|+|.|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEE
Confidence 45566667788899999999999999999999999999999988877765432 5778999999999999999999
Q ss_pred EeCCcceEEEEEEEE
Q psy16652 354 ANKYGSAQKEIELFD 368 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v 368 (384)
.|..|..+.++.|.|
T Consensus 76 ~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 76 SNSSGEATASVNLTV 90 (90)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEC
Confidence 999999999999876
No 29
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.65 E-value=1.5e-15 Score=102.68 Aligned_cols=81 Identities=25% Similarity=0.418 Sum_probs=70.6
Q ss_pred cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.|.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+....++.. ....|.|.+++.+|.|.|+|.|.|..|
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~a~N~~G 75 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV---------EAGDLRITKLSLSDSGMYQCVAENKHG 75 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE---------eCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence 45567788999999999999999999999999999876655443 255799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy16652 359 SAQKEIELFD 368 (384)
Q Consensus 359 ~~~~~~~l~v 368 (384)
...+++.|.|
T Consensus 76 ~~~~~~~l~V 85 (85)
T cd05728 76 TIYASAELAV 85 (85)
T ss_pred eEEEEEEEEC
Confidence 9999988875
No 30
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.65 E-value=1.9e-15 Score=101.91 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=67.9
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
+.+..|+.+.|.|.+.|.|.|.+.|++++.++... .++.+... ...+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-----~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESY-----KDLSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEc-----CCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 45678999999999999999999999999998654 34443221 1356899999999999999999999999999
Q ss_pred EEEEEEE
Q psy16652 362 KEIELFD 368 (384)
Q Consensus 362 ~~~~l~v 368 (384)
.++.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05894 80 ASLFVKV 86 (86)
T ss_pred EEEEEEC
Confidence 9988875
No 31
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.64 E-value=2.2e-15 Score=104.61 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=70.3
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeee-ccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA-TSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
...+..|+.+.|.|.+.|+|+|.+.|+++|.++..+.+....... .......++|.|..++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 456778899999999999999999999999999766543221110 0011235789999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy16652 361 QKEIELFDR 369 (384)
Q Consensus 361 ~~~~~l~v~ 369 (384)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999999875
No 32
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=3.5e-15 Score=101.85 Aligned_cols=86 Identities=22% Similarity=0.352 Sum_probs=71.5
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.+++.+|+|.|.|.|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---------MSGAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---------EeCCEEEECCCCcccCEEEEEEE
Confidence 445555666778899999999999999999999999887665443221 14678999999999999999999
Q ss_pred EeCCcceEEEEEEEE
Q psy16652 354 ANKYGSAQKEIELFD 368 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v 368 (384)
.|..|....+..|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd04968 73 ENIKGKDTHQGRIYV 87 (88)
T ss_pred EECCCcEEEEEEEEE
Confidence 999999999988887
No 33
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=2.6e-15 Score=98.39 Aligned_cols=73 Identities=30% Similarity=0.522 Sum_probs=64.4
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.|.+.|++++..+....+..+. ....|.|.+++.+|+|.|+|.|.|..|+...++.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW--------PDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC--------CCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 678999999999999999999999998776665543 246799999999999999999999999999999887
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 5
No 34
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.63 E-value=5.6e-15 Score=101.47 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=68.4
Q ss_pred EecCCCcccccCCcEEEEEEEeccCC-CeEEEEE-CCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 277 TINRPRQGQALQYDAILECHVEAYPP-PAIVWIK-DGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 277 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
.+.|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+... .++.... . ....++|.|..++.+|+|.|+|.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~--~--~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVR--N--DDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEe--C--CCCceEEEEeccChhhCEEEEEEE
Confidence 34556667889999999999999995 6999998 77766543 3333221 1 112468999999999999999999
Q ss_pred EeCC-cceEEEEEEEE
Q psy16652 354 ANKY-GSAQKEIELFD 368 (384)
Q Consensus 354 ~n~~-g~~~~~~~l~v 368 (384)
+|.. |..++++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9996 99999998876
No 35
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=5.8e-15 Score=97.53 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=62.2
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
|+.+.|.|.+.|.|.|++.|+++|..+...... ... ...+.|.|.+++.+|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH-------VSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE-------eeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 678999999999999999999999988654321 111 135679999999999999999999999999999888
Q ss_pred EE
Q psy16652 367 FD 368 (384)
Q Consensus 367 ~v 368 (384)
.|
T Consensus 74 ~V 75 (76)
T cd05867 74 HV 75 (76)
T ss_pred EE
Confidence 87
No 36
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.62 E-value=4.8e-15 Score=103.23 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=70.3
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+. ...+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...................+.|+|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45554 34456788999999999999999999999999866654321110000001112346899999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy16652 353 AANKYGSAQKEIELFD 368 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v 368 (384)
|.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999999888864
No 37
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.62 E-value=5.6e-15 Score=97.22 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=62.7
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.+.|.|.|.+.|+++|..+..+.++.+... ...+.|.|.++..+|+|.|+|.|.|..|+.+.++.|.|
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETT-----ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEEC-----CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 67999999999999999999999876666554321 13578999999999999999999999999999998875
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.62 E-value=6.7e-15 Score=99.03 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=63.8
Q ss_pred CcEEEEEEEeccCCC--eEEEEECCEEecCCC---ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 289 YDAILECHVEAYPPP--AIVWIKDGVQIMNNQ---HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 289 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
+.+.|.|.+.|.|.| .+.|+++|..+.... ++.... .....++|+|.+++.+|+|.|+|.|.|..|+..++
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~ 76 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME----VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS 76 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE----ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence 467899999999987 689999999885432 221111 00134689999999999999999999999999999
Q ss_pred EEEEEeeee
Q psy16652 364 IELFDRETQ 372 (384)
Q Consensus 364 ~~l~v~~~~ 372 (384)
+.|.|.++|
T Consensus 77 ~~L~V~~~P 85 (85)
T cd05854 77 ATLVVRGPP 85 (85)
T ss_pred EEEEEECCC
Confidence 999998864
No 39
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.62 E-value=9.3e-15 Score=100.09 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=67.8
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
....+.+|+.+.|.|.+.|.|.|.+.|+++|..+......... .......|.|.++..+|.|.|+|.|.|..|+.
T Consensus 8 ~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 8 NATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred cCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 3445789999999999999999999999999988654432111 11235689999999999999999999999999
Q ss_pred EEEEEEEE
Q psy16652 361 QKEIELFD 368 (384)
Q Consensus 361 ~~~~~l~v 368 (384)
..++.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 99988864
No 40
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.62 E-value=6.7e-15 Score=96.93 Aligned_cols=75 Identities=23% Similarity=0.422 Sum_probs=61.6
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.|++.|+++|.++.......... .....|.|..++.+|.|.|+|.|+|..|...+++.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~------~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK------VDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN 74 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE------ecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence 5788999999999999999999999885432211110 1345788999999999999999999999999999998
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
|
T Consensus 75 v 75 (76)
T cd05868 75 V 75 (76)
T ss_pred e
Confidence 7
No 41
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.61 E-value=9.9e-15 Score=100.03 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=71.0
Q ss_pred cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.|....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++...... . ...+|.|..++.+|+|.|+|.|.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ-G---KYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC-C---CEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 345567889999999999999999999999999988766655443211 1 124799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy16652 359 SAQKEIELFD 368 (384)
Q Consensus 359 ~~~~~~~l~v 368 (384)
....++.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 9999998875
No 42
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.61 E-value=1.6e-14 Score=99.98 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=75.6
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.|...+....+..|+.+.|.|.+.+.|.+.+.|+|++..+ ..+.++.+.. ....+.|.|.++.
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l--------------~~~~~~~~~~--~~~~s~L~I~~~~ 64 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQI--------------QEGEGIKIEN--TENSSKLTITEGQ 64 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEe--------------cCCCcEEEEe--cCCeeEEEECCCC
Confidence 45677788889999999999999999999999999987642 2234455544 3345689999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
.+|+|.|+|.+.|.. +.....+.|.|.+.|.
T Consensus 65 ~~D~G~Ytc~a~N~~-G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 65 QEHCGCYTLEVENKL-GSRQAQVNLTVVDKPD 95 (98)
T ss_pred hhhCEEEEEEEEcCC-CceeEEEEEEEecCCC
Confidence 999999999998554 5577788999987764
No 43
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.61 E-value=9.8e-15 Score=101.67 Aligned_cols=90 Identities=26% Similarity=0.423 Sum_probs=68.3
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEecCC-----CceeeeeeeccCccccceEEEeecCCCC
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIMNN-----QHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
+|.+.. +.+..+.+|+.++|.|.+.|.|.|.+.|+++ +..+... .++.+.. ......|.|.+++.+|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~-----~~~~~~L~I~~v~~~D 75 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG-----QHGESSLHIKDVKLSD 75 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee-----cCCeeEEEEeeCCcCC
Confidence 455533 4567788999999999999999999999994 4444321 2332211 1134679999999999
Q ss_pred CeEEEEEEEeCCcceEEEEEEEE
Q psy16652 346 FGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+|.|+|.|.|..|...+++.|.|
T Consensus 76 ~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 76 SGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CEEEEEEEeccCCcceeEEEEeC
Confidence 99999999999999999888764
No 44
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.60 E-value=7.3e-15 Score=96.00 Aligned_cols=74 Identities=24% Similarity=0.375 Sum_probs=59.5
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.+.|.|.|.+.|++++..+... .++.+.. .. .....|.|.+++.+|+|.|+|.|.|..|+.+.+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ--DN--CGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE--cC--CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 468999999999999999999988643 3433322 10 11236999999999999999999999999999988875
No 45
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=4.9e-15 Score=95.77 Aligned_cols=68 Identities=29% Similarity=0.589 Sum_probs=59.3
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
+.|.|.+.|.|.|.+.|+++|..+....++.+. ..+.|.|.+++.+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS--------PEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEEC--------CCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 468999999999999999999988766655443 25689999999999999999999999999988876
No 46
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.60 E-value=6.4e-15 Score=94.52 Aligned_cols=67 Identities=19% Similarity=0.431 Sum_probs=56.3
Q ss_pred EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.|.|.+.|.|.|.+.|++||.++....+.. ....|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 589999999999999999999997543221 2457999999999999999999999998877666554
No 47
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.60 E-value=1.1e-14 Score=95.57 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=59.6
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.+.|.|.|.+.|++++..+... .++.+.. .. ....+|.|..++.+|+|.|+|.|.|..|+...+..|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~--~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ--DN--CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE--cC--CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 468999999999999999999988743 3433321 11 12346999999999999999999999999999988865
No 48
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.60 E-value=6.2e-15 Score=95.84 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=59.0
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.|.|.+.|.|.|.+.|++++..+..... ... .....|.|.+++.+|.|.|+|.|.|..|..+.++.|.|.
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL-------NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE-------cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 46899999999999999999987754322 111 146789999999999999999999999999999998873
No 49
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.60 E-value=9.1e-15 Score=94.82 Aligned_cols=70 Identities=29% Similarity=0.465 Sum_probs=59.3
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.|.|.+.|.|.|.+.|+++|.++....+... ....|.|.+++.+|+|.|+|.|.|..|..+.++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK---------SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc---------CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 36899999999999999999999976643221 35789999999999999999999999998888777653
No 50
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.60 E-value=1.6e-14 Score=95.90 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=60.1
Q ss_pred EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.|.|.+.|.|.|.++|+++|.++..+.+........ ......+.|.|.+++.+|+|.|+|.|+|..|..++++.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 478999999999999999999998766433322111 1122356799999999999999999999999999988764
No 51
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.60 E-value=1.2e-14 Score=96.50 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=63.6
Q ss_pred CcEEEEEEEec--cCCCeEEEEECCEEecCC---CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 289 YDAILECHVEA--YPPPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 289 ~~~~l~C~~~~--~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
+++.|.|.+.+ .+++.|.|++||+++... .++... ......+.|.|.+++.+|+|.|+|.|.|..++..++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~----~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~ 76 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV----GGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAA 76 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe----ccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEE
Confidence 46789999977 447799999999999632 222221 011235689999999999999999999999999999
Q ss_pred EEEEEeeee
Q psy16652 364 IELFDRETQ 372 (384)
Q Consensus 364 ~~l~v~~~~ 372 (384)
..|.|.+||
T Consensus 77 a~L~V~~pP 85 (85)
T cd05853 77 ADLIVRGPP 85 (85)
T ss_pred EEEEEecCC
Confidence 999999876
No 52
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.59 E-value=1.9e-14 Score=97.73 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=66.6
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 362 (384)
..+..|+.+.|.|.+.|.|.|.+.|+++|..+....+....... .....|.|..++.+|+|.|+|.|.|..|+...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~----~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEe----CCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 34678999999999999999999999999998765443211110 13457899999999999999999999999999
Q ss_pred EEEEEE
Q psy16652 363 EIELFD 368 (384)
Q Consensus 363 ~~~l~v 368 (384)
++.|.|
T Consensus 80 ~~~l~v 85 (85)
T cd05857 80 TYHLDV 85 (85)
T ss_pred EEEEEC
Confidence 998875
No 53
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=2.4e-14 Score=97.18 Aligned_cols=80 Identities=38% Similarity=0.557 Sum_probs=66.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 86 (88)
T cd05851 8 FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVY 86 (88)
T ss_pred cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEE
Confidence 445678899999999999999999999999987765543344456689999999999999999999999986 5666665
Q ss_pred E
Q psy16652 270 V 270 (384)
Q Consensus 270 v 270 (384)
|
T Consensus 87 V 87 (88)
T cd05851 87 V 87 (88)
T ss_pred E
Confidence 5
No 54
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=2e-14 Score=95.28 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=62.9
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.|.+.|+++|..+......... ......|.|.+++.+|.|.|+|.|.|..|...+.+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~------~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 74 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR------RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH 74 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE------EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence 678999999999999999999999988655432110 11357899999999999999999999999999999888
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
|
T Consensus 75 V 75 (76)
T cd04978 75 V 75 (76)
T ss_pred E
Confidence 7
No 55
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.58 E-value=3.7e-14 Score=96.39 Aligned_cols=86 Identities=19% Similarity=0.340 Sum_probs=67.3
Q ss_pred EecCCCcccccCCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652 277 TINRPRQGQALQYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
.+.+.+..+.+|+.+.|.|.+.|.|. .+.|++ ++..+....++.+.. . .....|+|..+..+|+|.|+|.|+|
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~--~---g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK--E---GVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe--C---CCeeEEEEecCChHHCEEEEEEEEc
Confidence 34456677889999999999999998 999998 577776655554432 0 1235899999999999999999999
Q ss_pred CCcce-EEEEEEEE
Q psy16652 356 KYGSA-QKEIELFD 368 (384)
Q Consensus 356 ~~g~~-~~~~~l~v 368 (384)
..|.. ++++.|.+
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99986 66677765
No 56
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=2e-14 Score=97.31 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=63.8
Q ss_pred CcEEEEEEEeccCCC--eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 289 YDAILECHVEAYPPP--AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 289 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
+.+.|.|.+.|.|.| .+.|+++|..+..... ....... .....+.|.|.+++.+|+|.|+|.|.|..|...++..
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG--GKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe--cccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 468899999999987 6799999998854321 1110000 0113578999999999999999999999999999999
Q ss_pred EEEeeee
Q psy16652 366 LFDRETQ 372 (384)
Q Consensus 366 l~v~~~~ 372 (384)
|.|.++|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9999865
No 57
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.57 E-value=6.8e-14 Score=104.35 Aligned_cols=122 Identities=17% Similarity=0.291 Sum_probs=87.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEE
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQ 313 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~ 313 (384)
.|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|.+.+.+.......|+.+.|.|.+.|. |. +.|.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 58999999999999999999876664 77889999999998876665555578899999999985 54 38999999864
Q ss_pred ecC----CCcee---eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 314 IMN----NQHYS---VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 314 ~~~----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
... ..... .....++.....+.|.+......+.+.|+|.+.+..-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 221 11111 1112222222345666665555667799999988653
No 58
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.57 E-value=4.9e-14 Score=90.59 Aligned_cols=68 Identities=21% Similarity=0.423 Sum_probs=55.8
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
|+.+.|.|.+.|.|.|.|.|++++..+....+... ....|.|.+++ |+|.|+|.|.|..|..+.+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~---------~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV---------GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec---------CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 57899999999999999999999988865443221 24568888864 7899999999999998888776
No 59
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=3.8e-14 Score=97.06 Aligned_cols=78 Identities=27% Similarity=0.507 Sum_probs=63.8
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
|+.+.|.|.+.|.|.|.+.|+++|..+. ...++... ....|+|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS--------QTGDLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC--------CCCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence 6789999999999999999999886431 12222221 2457999999999999999999999999
Q ss_pred eEEEEEEEEeeeec
Q psy16652 360 AQKEIELFDRETQT 373 (384)
Q Consensus 360 ~~~~~~l~v~~~~~ 373 (384)
...++.|.|.+...
T Consensus 73 ~~~~~~l~V~~~~~ 86 (90)
T cd05726 73 ILTKAYLEVTDVIA 86 (90)
T ss_pred eEEEEEEEEeeccc
Confidence 99999999998753
No 60
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.56 E-value=3.5e-14 Score=94.24 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=62.5
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.|.+.|++++..+....++.... ......|.|.+++.+|.|.|+|.|.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 6789999999999999999999998887665554332 11346799999999999999999999999987776655
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
+
T Consensus 76 ~ 76 (78)
T cd05743 76 L 76 (78)
T ss_pred E
Confidence 4
No 61
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.56 E-value=6.3e-14 Score=96.38 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=61.1
Q ss_pred CeEEecCCCcccc---cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652 274 PVITINRPRQGQA---LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY 349 (384)
Q Consensus 274 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 349 (384)
|.+...+....+. .|+.+.|.|.+.|.|.|.+.|+++|..+.......... .++.|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-------~~g~L~i~~~~~~~D~G~Y 74 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-------IDGNLIISNPSEVKDSGRY 74 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------eCCeEEEccCCccCcCEEE
Confidence 4444444443332 46899999999999999999999999886443322221 34678888875 6899999
Q ss_pred EEEEEeCCcceEE
Q psy16652 350 ACKAANKYGSAQK 362 (384)
Q Consensus 350 ~C~a~n~~g~~~~ 362 (384)
+|.|.|..|+..+
T Consensus 75 ~C~A~N~~G~~~S 87 (94)
T cd05848 75 QCLATNSIGSILS 87 (94)
T ss_pred EEEEEcCCCeEEe
Confidence 9999999998754
No 62
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.56 E-value=2.5e-14 Score=95.05 Aligned_cols=78 Identities=22% Similarity=0.318 Sum_probs=65.3
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
....+.+|+.+.|.|.+.+. .+.+.|+++|.++..+.++.+. ...|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 34557889999999999985 5689999999999766655432 3579999999999999999999999998
Q ss_pred EEEEEEEE
Q psy16652 361 QKEIELFD 368 (384)
Q Consensus 361 ~~~~~l~v 368 (384)
..++.|.|
T Consensus 72 ~~~~~v~V 79 (79)
T cd04973 72 TTYFSVNV 79 (79)
T ss_pred cEEEEEeC
Confidence 88887764
No 63
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.56 E-value=1e-13 Score=95.44 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=60.6
Q ss_pred CeEEecCCCccccc---CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652 274 PVITINRPRQGQAL---QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY 349 (384)
Q Consensus 274 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 349 (384)
|.+...|....+.+ |+.++|.|.+.|.|.|.+.|+++|..+.......... ..+.|.|.++. .+|.|.|
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-------~~g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-------VAGNLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------ECCeEEEccCCccCcCEEE
Confidence 44444455544444 4689999999999999999999999986443222211 24678888765 6899999
Q ss_pred EEEEEeCCcceEE
Q psy16652 350 ACKAANKYGSAQK 362 (384)
Q Consensus 350 ~C~a~n~~g~~~~ 362 (384)
+|.|+|..|+..+
T Consensus 75 ~C~A~N~~G~~~s 87 (94)
T cd05850 75 QCLAINRCGTVVS 87 (94)
T ss_pred EEEEEcCcCcEEE
Confidence 9999999998765
No 64
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.55 E-value=5.2e-14 Score=93.03 Aligned_cols=72 Identities=31% Similarity=0.590 Sum_probs=56.9
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE--EEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK--EIELF 367 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~ 367 (384)
++|.|.+.|.|.|.+.|+++|.++.... ++.+.. ....|.|.+++.+|+|.|.|.|.|..|.... .++|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS-------KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC-------CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 4799999999999999999999886543 222211 2458999999999999999999999998754 55555
Q ss_pred Ee
Q psy16652 368 DR 369 (384)
Q Consensus 368 v~ 369 (384)
|.
T Consensus 74 v~ 75 (77)
T cd05760 74 II 75 (77)
T ss_pred Ee
Confidence 53
No 65
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.55 E-value=9.8e-14 Score=94.56 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=64.2
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
.++.+.+|+.++|.|.+.|. .|.+.|++++..+... +..+.. ...+|.|.+++.+|+|.|.|.|.|..|..
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 81 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSN-------DNRTLTFNNVTRSDTGHYQCEASNEVSNM 81 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeC-------CCCEEEECcCChhhCEEEEEEEEcCCCCE
Confidence 35678899999999999999 9999999999887643 332221 34689999999999999999999999986
Q ss_pred EE-EEEEEE
Q psy16652 361 QK-EIELFD 368 (384)
Q Consensus 361 ~~-~~~l~v 368 (384)
.+ .+.|.|
T Consensus 82 ~S~~~~L~V 90 (91)
T cd05740 82 TSDPYILNV 90 (91)
T ss_pred EeeeEEEEe
Confidence 54 566765
No 66
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=7.1e-14 Score=92.00 Aligned_cols=73 Identities=32% Similarity=0.537 Sum_probs=60.3
Q ss_pred CCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.... ....|.|..++.+|.|.|+|.|.|..|..+.++.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY--------DNGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe--------cCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999997 56666544433221 35679999999999999999999999999998888
Q ss_pred EE
Q psy16652 367 FD 368 (384)
Q Consensus 367 ~v 368 (384)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 75
No 67
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=3.2e-14 Score=92.97 Aligned_cols=71 Identities=30% Similarity=0.563 Sum_probs=58.6
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.|.|.+.|.|.|.+.|++++..+.... .... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADR-TKFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCc-eeEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 4689999999999999999998775332 1111 135689999999999999999999999999999998873
No 68
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.55 E-value=9e-14 Score=97.86 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=65.8
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC----ceeeeeeeccCccccceEEEe--ecCCCCC
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVI--TIERRQF 346 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~--~~~~~d~ 346 (384)
+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ...... ..+ ....+.+. .++.+|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~D~ 76 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVL-PSG---SLFFLRVVHGRKGRSDE 76 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEe-cCC---cEEEEEeeccCCCcCcC
Confidence 4667777777888999999999999999999999999999886521 111110 000 11122222 2368899
Q ss_pred eEEEEEEEeCCcc-eEEEEEEEE
Q psy16652 347 GQYACKAANKYGS-AQKEIELFD 368 (384)
Q Consensus 347 G~Y~C~a~n~~g~-~~~~~~l~v 368 (384)
|.|+|.|.|..|. .+..+.|.|
T Consensus 77 G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 77 GVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEEccccceecceEEEEe
Confidence 9999999999999 666677765
No 69
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.54 E-value=3.6e-14 Score=95.77 Aligned_cols=78 Identities=18% Similarity=0.374 Sum_probs=64.0
Q ss_pred ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
....|+.+.|.|.+.|.|.|.+.|++++..+......... .....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-------KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-------CceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 4567999999999999999999999999877544322111 134679999999999999999999999999888
Q ss_pred EEEEE
Q psy16652 364 IELFD 368 (384)
Q Consensus 364 ~~l~v 368 (384)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 88764
No 70
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=4.2e-14 Score=91.54 Aligned_cols=69 Identities=23% Similarity=0.487 Sum_probs=57.7
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.+.|.|.|.+.|++++..+... ++... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 468999999999999999998766432 33322 3567999999999999999999999999999888865
No 71
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.54 E-value=5.8e-14 Score=92.06 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=57.1
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecC--CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELF 367 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 367 (384)
++|.|.+.|.|.|.+.|++++..+.. ..++... ..+.|.|.+++.+|+|.|+|.|.|..|.. .....|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~--------~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL--------RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc--------CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 36899999999999999999988863 3343322 34579999999999999999999999985 5666776
Q ss_pred Ee
Q psy16652 368 DR 369 (384)
Q Consensus 368 v~ 369 (384)
|+
T Consensus 73 v~ 74 (74)
T cd05738 73 VR 74 (74)
T ss_pred EC
Confidence 63
No 72
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.54 E-value=6.3e-14 Score=92.39 Aligned_cols=71 Identities=30% Similarity=0.479 Sum_probs=56.5
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCC---CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
+.|.|.+.|.|.|.+.|+++|...... .++... .....|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-------PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-------cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 368999999999999999998643211 222211 1345799999999999999999999999999999888
Q ss_pred E
Q psy16652 368 D 368 (384)
Q Consensus 368 v 368 (384)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 7
No 73
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.52 E-value=1.9e-13 Score=95.12 Aligned_cols=92 Identities=26% Similarity=0.433 Sum_probs=70.6
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCC-CeE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQ-FGQ 348 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~ 348 (384)
+|.+. .+....+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+...... ....++|.|.++..+| .|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~-~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSP-GGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEECCcccccccee
Confidence 45554 3445667899999999999999999 69999999988654 35544432211 1224679999999855 899
Q ss_pred EEEEEEeCCcceEEEEEE
Q psy16652 349 YACKAANKYGSAQKEIEL 366 (384)
Q Consensus 349 Y~C~a~n~~g~~~~~~~l 366 (384)
|.|.|.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999999988876
No 74
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.52 E-value=1.4e-13 Score=91.08 Aligned_cols=73 Identities=26% Similarity=0.551 Sum_probs=60.9
Q ss_pred EEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
.|.|.+.|.|.|.+.|++++..+....+..+... .....|.|..++.+|.|.|+|.|.|..|..+.++.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~-----~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI-----ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEe-----CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 6899999999999999999998865543333221 124579999999999999999999999999999999886
No 75
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.52 E-value=2.7e-13 Score=93.14 Aligned_cols=91 Identities=19% Similarity=0.327 Sum_probs=67.6
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+.+.|....+.+|++++|.|.+.+.| ++.+.|++. +.... ..+.++.+... ....++|.|.+++
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~-------------~~~~r~~v~~~-~~~~~~L~I~~v~ 68 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLT-------------PNQQRISVVRN-DDYSSTLTIYNAN 68 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCcc-------------ccCCeEEEEeC-CCCceEEEEeccC
Confidence 34556677789999999999999988 479999984 43210 11234444332 2335689999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.+|+|.|+|.|.|..++..+.++.|.|
T Consensus 69 ~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 69 IDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred hhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 999999999999877788888888776
No 76
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.52 E-value=1.5e-13 Score=94.03 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCcEEEEEEEeccCCCeEEEEEC----CEEecCCCceeeeeeecc----CccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKD----GVQIMNNQHYSVSHFATS----DEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
|+.+.|.|.+.|.|.|.+.|+++ |..+.............. .....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 57899999999999999999984 444433322211111100 0112367999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16652 360 AQKEIELFD 368 (384)
Q Consensus 360 ~~~~~~l~v 368 (384)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999988887
No 77
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.52 E-value=1.6e-13 Score=95.04 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=66.3
Q ss_pred CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCcee-E--------eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSI-Y--------RGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.....+.+|+++.|.|.+.| .|+|.+.|+|++..+....... . ....|.|.++..+|+|.|+|.|.|..|
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 35567899999999999999 8889999999998876443322 1 136799999999999999999999999
Q ss_pred CceeeEEEEEEE
Q psy16652 260 RGMKRNIAVEVE 271 (384)
Q Consensus 260 ~~~~~~~~l~v~ 271 (384)
.. +.++.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 75 677777764
No 78
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.52 E-value=1.5e-13 Score=93.85 Aligned_cols=82 Identities=20% Similarity=0.270 Sum_probs=59.2
Q ss_pred CCcEEEEEEEeccCCCeEEEEECC----EEecCCCcee--eeee--eccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDG----VQIMNNQHYS--VSHF--ATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~~~~--~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
|+.+.|.|.+.|.|.|.|.|++++ ..+....... .... ..........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 578999999999999999999964 3332221111 1111 0111112357999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16652 360 AQKEIELFDR 369 (384)
Q Consensus 360 ~~~~~~l~v~ 369 (384)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999998873
No 79
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.51 E-value=2.6e-13 Score=92.22 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=67.4
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+.+.+.+..+.+|+++.|.|.+.+.|. .+.|++++... .....++.+.. ......|.|.+++.+
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~-------------~~~~~r~~~~~--~g~~~~L~I~~v~~~ 66 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK-------------IVSSQRVVVQK--EGVRSRLTIYNANIE 66 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeE-------------ecCCCCEEEEe--CCCeeEEEEecCChH
Confidence 455677788999999999999999887 89999854321 12234555543 344568999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
|+|.|+|.+.|..+......+.|.+
T Consensus 67 D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 67 DAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred HCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 9999999999877665677777765
No 80
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.51 E-value=2.6e-13 Score=92.96 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=64.8
Q ss_pred EecCCCcccccCCcEEEEEEEeccCCCeEEEEE-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652 277 TINRPRQGQALQYDAILECHVEAYPPPAIVWIK-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
.+.|....+..|+.+.|.|.+.|.|+ .+.|++ ++..+....+..... .....++|+|.+++.+|+|.|+|.|.|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ----NDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe----CCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 34455667889999999999999874 999997 566665544433321 112356899999999999999999999
Q ss_pred CCc-ceEEEEEEEE
Q psy16652 356 KYG-SAQKEIELFD 368 (384)
Q Consensus 356 ~~g-~~~~~~~l~v 368 (384)
..| ..++++.|.|
T Consensus 79 ~~g~~~~~sv~l~~ 92 (92)
T cd04977 79 AKGTESEATVNLKI 92 (92)
T ss_pred CCCCcceeEEEEEC
Confidence 964 5677777654
No 81
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=2.9e-13 Score=92.65 Aligned_cols=80 Identities=23% Similarity=0.402 Sum_probs=59.3
Q ss_pred CeEEecCCCccccc---CCcEEEEEEEeccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecC-CCCCeE
Q psy16652 274 PVITINRPRQGQAL---QYDAILECHVEAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIE-RRQFGQ 348 (384)
Q Consensus 274 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~ 348 (384)
|.+...|....+.+ +..+.|.|.+.|.|.|.++|++++..+... .++.+ .++.|.|..+. .+|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~---------~~g~L~I~~~~~~~D~G~ 72 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM---------VGGNLVINNPDKYKDAGR 72 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE---------ECCEEEECcCCcCCCCEE
Confidence 44444444433333 457999999999999999999999887532 33221 35689998875 689999
Q ss_pred EEEEEEeCCcceEE
Q psy16652 349 YACKAANKYGSAQK 362 (384)
Q Consensus 349 Y~C~a~n~~g~~~~ 362 (384)
|.|.|+|..|...+
T Consensus 73 Y~C~A~N~~G~~~s 86 (93)
T cd05849 73 YVCIVSNIYGKVRS 86 (93)
T ss_pred EEEEEEeCcceEEE
Confidence 99999999998755
No 82
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.51 E-value=2.5e-13 Score=93.46 Aligned_cols=90 Identities=24% Similarity=0.447 Sum_probs=72.9
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++.. +..+.++.+.. ....+.|.|.+++
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~--------------l~~~~~~~~~~--~~~~~~L~I~~v~ 64 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRP--------------LTSSQRYQIES--DGGSSSLTIKNVT 64 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEE--------------EESSSSEEEEE--ETTEEEEEESSES
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccc--------------eeeeeeeeeec--ccceeEEccCCCC
Confidence 5677788889999999999999999988889999998654 23356666666 3378899999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.+|+|.|+|.+.+. .+..+..+.|.|
T Consensus 65 ~~D~G~Y~C~~~n~-~g~~~~~~~l~V 90 (90)
T PF07679_consen 65 REDAGTYTCVASNS-SGEATASVNLTV 90 (90)
T ss_dssp GGGSEEEEEEEEET-TEEEEEEEEEEE
T ss_pred hhhCEEEEEEEEEC-CCEEEEEEEEEC
Confidence 99999999999866 555666666654
No 83
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=3.6e-13 Score=91.88 Aligned_cols=80 Identities=36% Similarity=0.604 Sum_probs=66.2
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 86 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIY 86 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEE
Confidence 455678899999999999999999999999887665544444466799999999999999999999999885 5556665
Q ss_pred E
Q psy16652 270 V 270 (384)
Q Consensus 270 v 270 (384)
|
T Consensus 87 V 87 (88)
T cd04968 87 V 87 (88)
T ss_pred E
Confidence 4
No 84
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.6e-13 Score=89.23 Aligned_cols=71 Identities=28% Similarity=0.524 Sum_probs=58.6
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccCceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
|+.+.|.|.+.|.|.|.+.|++++..+........ .+++|.|.+++.+|+|.|+|.|.|..|.. +.+..|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence 68899999999999999999999876655444333 45789999999999999999999999886 5555554
No 85
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.50 E-value=3e-13 Score=92.09 Aligned_cols=80 Identities=25% Similarity=0.440 Sum_probs=63.6
Q ss_pred CCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCC-CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 280 RPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNN-QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
|....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+... .++... ..+.|.|.+++.+|+|.|+|.|.|..
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--------~~~~L~I~~~~~~D~G~Y~C~a~N~~ 74 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV--------DDGNLLIAEARKSDEGTYKCVATNMV 74 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc--------cCCEEEEeECCcccCEEEEEEEEecc
Confidence 445667889999999998 78999999999999988653 232221 24689999999999999999999999
Q ss_pred cceEE-EEEEE
Q psy16652 358 GSAQK-EIELF 367 (384)
Q Consensus 358 g~~~~-~~~l~ 367 (384)
|...+ .+.|.
T Consensus 75 G~~~s~~~~l~ 85 (86)
T cd05724 75 GERESAAARLS 85 (86)
T ss_pred CceeeeeEEEE
Confidence 98643 45544
No 86
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.50 E-value=3.5e-13 Score=92.61 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=64.1
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--e---ccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--R---GNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
+....+.+|+++.|.|.+.|.|.|.+.|++++..+........ . ...|.|.++..+|+|.|+|.+.|..|.. +.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eE
Confidence 5567889999999999999999999999999887765443222 1 2379999999999999999999998876 55
Q ss_pred EEEEE
Q psy16652 265 NIAVE 269 (384)
Q Consensus 265 ~~~l~ 269 (384)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05737 87 DVTVS 91 (92)
T ss_pred EEEEe
Confidence 55554
No 87
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.50 E-value=1.6e-13 Score=90.14 Aligned_cols=72 Identities=32% Similarity=0.594 Sum_probs=59.5
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+|+.+.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence 5899999999999999999999998876544332 3346689999999999999999999999886 5555554
No 88
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.49 E-value=6e-13 Score=89.77 Aligned_cols=78 Identities=27% Similarity=0.441 Sum_probs=63.5
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ... ....|.|.++..+|+|.|+|.|.|..|.. +.+
T Consensus 3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~ 81 (86)
T cd05894 3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HAS 81 (86)
T ss_pred CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEE
Confidence 356788999999999999999999999999987764322 222 13579999999999999999999999985 555
Q ss_pred EEEE
Q psy16652 266 IAVE 269 (384)
Q Consensus 266 ~~l~ 269 (384)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 6554
No 89
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.49 E-value=1e-12 Score=97.96 Aligned_cols=113 Identities=19% Similarity=0.358 Sum_probs=81.3
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCC
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNS 222 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~ 222 (384)
+|.|.+++.+|+|.|+|.+.+. .+.....+.|.|..+|.+.... ......+|+.+.|.|.+.+. |. .++.|++++.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~-~~~~~~~~~l~v~~~P~v~~~~-~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTP-PHQAQQIIQLSVSEPPRVRLSL-EKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEcc-CcceeeEEEEEEecCCceEEeC-CCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 5999999999999999999754 3457788899999888775432 33334478899999999884 54 4899999875
Q ss_pred cccc----------------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 223 AALS----------------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 223 ~~~~----------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.... .++.....+.|.+.....++...|+|.+.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l 132 (139)
T cd05771 80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSL 132 (139)
T ss_pred CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCC
Confidence 4211 111222335677776666677799999988543
No 90
>KOG3515|consensus
Probab=99.49 E-value=1.5e-13 Score=124.11 Aligned_cols=348 Identities=16% Similarity=0.117 Sum_probs=194.8
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
|...|+|+++..+.- -....--+..|.....-.+..+.|.|+..+........-... ....+|.-......
T Consensus 36 p~~~~eW~h~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l------~v~~~pa~~~~~~e 106 (741)
T KOG3515|consen 36 PEIDVEWYHSTSGEH---GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL------DVDYPPACLPELGE 106 (741)
T ss_pred CCcceEEEecCcccc---cccccccCCceeeecchhhhhhhhhhhhcccccCceecceee------ccccCccccccccc
Confidence 567899999965544 222333456677777777888899999877633322211111 11122222222333
Q ss_pred eeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 82 QIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
.....+..+.+.|.... .+...+.|..+..... ...+.....+....... ......|.+...+.+|.|.|
T Consensus 107 ~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~------~~~~~~~~~~~~a~gss--~t~~s~l~~~v~Rka~~g~~ 178 (741)
T KOG3515|consen 107 IFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL------NAVNQRGRVGAGALGSS--YTEPSLLKQTVSRKADNGNY 178 (741)
T ss_pred hhhhcCCeEEEEEeecCCCCCCcceeeeeccEEee------cccCCcccccccccCce--eccccceeeEEEEecCCcee
Confidence 44678899999997644 3677999999775311 00000000000000000 01233588888899999999
Q ss_pred EEEEEEccC--cceeeeEEEEEecCCc--cccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCceeE--
Q psy16652 160 KCEVIISLN--NKVSAEVELIVRRPPI--ISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIY-- 232 (384)
Q Consensus 160 ~C~~~~~~~--~~~~~~~~l~v~~~~~--~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~-- 232 (384)
+|.+.+... ...-....+.+..+.. ..........+.+|+.+.|.|.+. +.|.+.++|+++............
T Consensus 179 tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~ 258 (741)
T KOG3515|consen 179 TCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEP 258 (741)
T ss_pred EcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCC
Confidence 999975422 2233333333332221 111112224578999999999774 578889999998876554311111
Q ss_pred ----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEe-ccCCCeEE
Q psy16652 233 ----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVE-AYPPPAIV 306 (384)
Q Consensus 233 ----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~ 306 (384)
....+.+..-...+.-...|++.| .. .....+.+..+|.- .+.+.......|+...+.|... ++|.+.+.
T Consensus 259 sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~---~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~ 334 (741)
T KOG3515|consen 259 SGDTVSSTLVLRVGRQDLQAQLKCKASN-LL---AASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIA 334 (741)
T ss_pred CCCcccccccccccccchhhhhhccccC-cc---ccceeeecccccccccccCcccccccccccccceeccCCCCcccee
Confidence 112343333344444567899998 11 22334445555532 2334445577888889998874 57777999
Q ss_pred EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
|+++...........- ............+..-.....|.|.|.|.|.|.......+..+.+...
T Consensus 335 w~~~~~~~~~~~~~~~-~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l 398 (741)
T KOG3515|consen 335 WYKDTKMPKGSQKASS-KTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVL 398 (741)
T ss_pred eeccCcccccccCccc-CCCcccceeeEEeeecccchhcCceEEccccccccccccccceecccc
Confidence 9996655433322111 111111111122344556678899999999998866655555444443
No 91
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.49 E-value=2.8e-13 Score=91.51 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=67.1
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|.. ...+.|.
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 84 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA 84 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence 455678899999999999999999999999998876655556677899999999999999999999998875 5555554
No 92
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=6.3e-13 Score=92.08 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=62.5
Q ss_pred cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeec-----CCCCCeEEEEEE
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI-----ERRQFGQYACKA 353 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a 353 (384)
.|....+..|+.+.|.|.+.|.|.|.+.|+++|..+.......... ..++.|.|..+ +.+|.|.|.|.|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~------~~~~~l~i~~v~~~~~~~~D~G~Y~C~a 78 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ------LPNGSLLITSVVHSKHNKPDEGFYQCVA 78 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE------ccCCeEEEeeeeccCCCCCcCEEEEEEE
Confidence 4555667789999999999999999999999999886544311111 12445666665 578999999999
Q ss_pred EeC-Ccce-EEEEEEEE
Q psy16652 354 ANK-YGSA-QKEIELFD 368 (384)
Q Consensus 354 ~n~-~g~~-~~~~~l~v 368 (384)
.|. .|.. +..+.|.|
T Consensus 79 ~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 79 QNDSLGSIVSRTARLTV 95 (95)
T ss_pred ECCccCcEEEeeeEEeC
Confidence 999 9987 44566653
No 93
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.47 E-value=7.1e-13 Score=91.14 Aligned_cols=89 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++... ....++.+.. ....+.|.|.++
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~i~~~ 66 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQII--------------VSSQRHQITS--TEYKSTFEISKV 66 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEEC--------------CCCCcEEEEE--cCCeeEEEECCC
Confidence 567777888899999999999999999998899999976532 1234555544 334568999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVEL 177 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l 177 (384)
+.+|+|.|+|.+.|..+ ..+..+.|
T Consensus 67 ~~~D~G~Y~C~a~N~~G-~~~~~~~l 91 (92)
T cd05747 67 QMSDEGNYTVVVENSEG-KQEAQFTL 91 (92)
T ss_pred CcccCEeEEEEEEcCCC-CEeEEEEe
Confidence 99999999999986554 45544443
No 94
>KOG3515|consensus
Probab=99.47 E-value=2.2e-13 Score=123.14 Aligned_cols=345 Identities=15% Similarity=0.079 Sum_probs=194.9
Q ss_pred CCCCCcchhccccCCCCC----------CCCCCCCceEEEEEeeecceEEEEEEEeeecc--chhHHHHHHHHHhhhhcc
Q psy16652 2 IAPSPFDFVNRFQNTSTP----------WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSV--AGPSIIVALSFLISLASS 69 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~--~~~~~~~~~~~~~~~~~~ 69 (384)
|.+-+.|.+|.+...-.. ..........+.+.....+|.|.|+|.+...+ ...... .........
T Consensus 127 P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~---~~~i~v~~~ 203 (741)
T KOG3515|consen 127 PNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAK---QLTIIVEAP 203 (741)
T ss_pred CCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccc---eeEeecccc
Confidence 445677887743322111 11111345678899999999999999987731 111110 000111112
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
.....+........+.+|..+.|.|...+ .|...++|+++....... +......+...-...+.+
T Consensus 204 ~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~--------------sl~~~~~sg~~v~~~~~~ 269 (741)
T KOG3515|consen 204 CKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES--------------SLLSQEPSGDTVSSTLVL 269 (741)
T ss_pred cccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhh--------------hcccCCCCCCcccccccc
Confidence 22222222233345889999999997755 578899999977543211 000001111112223444
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~ 227 (384)
..-+..+.-...|.+.+ .-.....+.+..++...........+..|+...+.|.. .+.|...+.|+++.......
T Consensus 270 ~~~r~~~~~~~kc~a~n----~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 270 RVGRQDLQAQLKCKASN----LLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGS 345 (741)
T ss_pred cccccchhhhhhccccC----ccccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccc
Confidence 44444555577899875 12223334444444444344444557889999999986 55777899999955433222
Q ss_pred Ccee--------EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCC-CcccccCCcEEEEEEE
Q psy16652 228 GGSI--------YRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRP-RQGQALQYDAILECHV 297 (384)
Q Consensus 228 ~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~ 297 (384)
.... .....+........|.|.|+|.+.+..... .+..+.+.+-.+|.+..... .....+++.....-.+
T Consensus 346 ~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~ 425 (741)
T KOG3515|consen 346 QKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPV 425 (741)
T ss_pred cCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcc
Confidence 1111 111245556778889999999999865433 23345555555555443222 2233334433333333
Q ss_pred eccCC-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 298 EAYPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 298 ~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.++|. +++.|.+++..+.....-...... ......+.++...|.|.|.|.+.|..|.....+.+-+.--|
T Consensus 426 ~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~-----~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp 496 (741)
T KOG3515|consen 426 RGAPAERTFYWTFRLYKLSQVDGGVVRVGA-----GAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP 496 (741)
T ss_pred cCCCcccchhheecceecccccCceEEeec-----cccccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence 35554 489999998888655442222111 12223355688899999999999999999988886554443
No 95
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.47 E-value=5.1e-13 Score=85.79 Aligned_cols=66 Identities=26% Similarity=0.467 Sum_probs=52.7
Q ss_pred EEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 292 ILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 292 ~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
.|.|.+.|.|+|++.|+++|.++.... ++.. ...+|.|.+++.+|+|.|+|.|+|..........+
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV---------DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe---------CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 589999999999999999999887542 2211 24579999999999999999999986655554443
No 96
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.46 E-value=9.5e-13 Score=89.28 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=62.6
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccCc-eeEe--------ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYR--------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~--------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
|+.+.|.|.+.|.|++.+.|++++..+..... .... .+.|.|.++..+|+|.|+|.|.|..|.. +..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence 78999999999999999999999876643322 2111 2579999999999999999999999986 778888
Q ss_pred EEEecCe
Q psy16652 269 EVEFAPV 275 (384)
Q Consensus 269 ~v~~~p~ 275 (384)
.|..+|.
T Consensus 80 ~V~~~P~ 86 (88)
T cd05735 80 TVQEPPD 86 (88)
T ss_pred EEeCCCC
Confidence 8887663
No 97
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.46 E-value=3.9e-13 Score=88.87 Aligned_cols=73 Identities=19% Similarity=0.449 Sum_probs=57.2
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
+.|.|.+.| .|.|.+.|+++|.++............ .......|.|..++.+|.|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR--NKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE--ecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 999999999999988765443211111 1123568999999999999999999999999887765
No 98
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.46 E-value=7.7e-13 Score=91.84 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=65.3
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE----------eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----------RGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
....+..|+.+.|.|.+.|+|+|.+.|+|++.++........ ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 11 QLEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred ceEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 356688899999999999999999999999988765433221 1358999999999999999999999887
Q ss_pred ceeeEEEEEEE
Q psy16652 261 GMKRNIAVEVE 271 (384)
Q Consensus 261 ~~~~~~~l~v~ 271 (384)
. +.++.|.|.
T Consensus 91 ~-~~t~~l~V~ 100 (101)
T cd05859 91 K-SYTFALQIQ 100 (101)
T ss_pred E-EEEEEEEEE
Confidence 5 666776664
No 99
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=7.9e-13 Score=87.28 Aligned_cols=72 Identities=28% Similarity=0.493 Sum_probs=58.9
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
|+++.|.|.+.|.|.|.++|++++..+.... ........|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 7899999999999999999999987665432 233456789999999999999999999998886 55555554
No 100
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=8.1e-13 Score=87.42 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=57.2
Q ss_pred cCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
.|.+..+..|+.+.|.|.+.|.|.| +|.|+++|.++... .. ...+.|.|..+ .|.|.|.|.|+|..
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~---------~~~s~L~i~~~--~d~g~Y~C~A~N~~ 70 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PA---------PSPSVLNVPGL--NETSKFSCEAHNAK 70 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CC---------CCCCEEEEccc--cCCeEEEEEEEecc
Confidence 4556778899999999999999999 79999999988531 11 13467888776 47899999999999
Q ss_pred cceEE
Q psy16652 358 GSAQK 362 (384)
Q Consensus 358 g~~~~ 362 (384)
|...+
T Consensus 71 G~~~s 75 (81)
T cd05749 71 GVTTS 75 (81)
T ss_pred CcEEe
Confidence 97654
No 101
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.46 E-value=1.4e-12 Score=89.01 Aligned_cols=92 Identities=24% Similarity=0.405 Sum_probs=71.8
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCC-CeE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQ-FGQ 348 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~ 348 (384)
||.+ .......+.+|+.+.|.|.+.+.|+| .+.|.+++..+... .++.+...... ....++|+|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~-~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTG-SGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccC-CCcEEEEEECCCccccCCcE
Confidence 5655 44556778899999999999888888 68999888877553 56666543322 2356789999998766 799
Q ss_pred EEEEEEeCCcceEEEEEE
Q psy16652 349 YACKAANKYGSAQKEIEL 366 (384)
Q Consensus 349 Y~C~a~n~~g~~~~~~~l 366 (384)
|.|.|.|.+|+....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999988876
No 102
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.46 E-value=4.5e-13 Score=90.42 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=60.2
Q ss_pred CCcEEEEEEEecc--CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 288 QYDAILECHVEAY--PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 288 g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
|+.+.|.|.+.+. |.+.+.|.+++..+...................+.|+|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6789999999998 78899999988765322111100000111123568999999999999999999999999999888
Q ss_pred EEE
Q psy16652 366 LFD 368 (384)
Q Consensus 366 l~v 368 (384)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 103
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.46 E-value=9.6e-13 Score=89.67 Aligned_cols=80 Identities=26% Similarity=0.367 Sum_probs=65.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+....+.+|+++.|.|.+.|. .|.+.|++++..+....... ..+..|.|.+++.+|+|.|+|.|.|..|...+..+.|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 345578899999999999998 89999999987765433211 1345899999999999999999999999877777777
Q ss_pred EE
Q psy16652 269 EV 270 (384)
Q Consensus 269 ~v 270 (384)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 76
No 104
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.46 E-value=3.8e-13 Score=85.10 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=53.9
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.|.|.+.|.|.|.+.|+|++..+... ...+.|.|.++..+|+|.|+|.|+|..|.. ++++.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 479999999999999999999877522 245689999999999999999999998874 55555554
No 105
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.45 E-value=1.3e-12 Score=86.81 Aligned_cols=76 Identities=21% Similarity=0.368 Sum_probs=61.9
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+...+.+|+.+.|.|.+.+. .+.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v 77 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSV 77 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEE
Confidence 44668899999999999885 56899999998887655555567789999999999999999999987764 444444
No 106
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=2.2e-12 Score=89.85 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.+.. +.+..+.+|++++|.|.+.+.|.+.+.|++..... .+.. .....+.|+.+.. .....+|.|.++
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~-----~~~~--~~~~~~~r~~v~~--~~~~~~L~I~~v 71 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGH-----TFSE--GDKSPDGRIEVKG--QHGESSLHIKDV 71 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCc-----eecc--CCcCcCceEEEee--cCCeeEEEEeeC
Confidence 456654 66788999999999999999999999999954321 0100 0011234565543 344568999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELI 178 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 178 (384)
+.+|+|.|+|.+.|..+ ..+..+.|.
T Consensus 72 ~~~D~G~Y~C~A~N~~G-~~~~~~~l~ 97 (98)
T cd05870 72 KLSDSGRYDCEAASRIG-GHQKSMYLD 97 (98)
T ss_pred CcCCCEEEEEEEeccCC-cceeEEEEe
Confidence 99999999999986655 455555554
No 107
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=2.2e-12 Score=88.42 Aligned_cols=90 Identities=18% Similarity=0.345 Sum_probs=65.2
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+.+.|....+.+|+++.|.|.+.+.|. .+.|++.+... .....++.+.. ......+|.|.+++.+
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~-------------~~~~~~~~~~~-~~~~~~~L~I~~v~~~ 67 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEK-------------LVTQQQISVVQ-NDDVRSTLTIYNANIE 67 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCE-------------eccCCCEEEEe-CCCCEEEEEEecCCcc
Confidence 455677778899999999999998865 99999854321 11123333322 1345678999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
|+|.|+|.+.|..++....++.|.|
T Consensus 68 D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 68 DAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred cCEEEEEEEEcCCCCcceeEEEEEC
Confidence 9999999999776666677776653
No 108
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.44 E-value=5.2e-13 Score=91.44 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=63.1
Q ss_pred CcccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652 282 RQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 354 (384)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ....+.. ....|.|.+++.+|+|.|+|.++
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~ 80 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVR 80 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEc
Confidence 345678999999999998 688899999998764321 1111111 24689999999999999999999
Q ss_pred eCCcceEEEEEEEE
Q psy16652 355 NKYGSAQKEIELFD 368 (384)
Q Consensus 355 n~~g~~~~~~~l~v 368 (384)
|..|..+.++.|.|
T Consensus 81 N~~g~~~~~~~L~v 94 (94)
T cd05756 81 NSTYCMKVSISLTV 94 (94)
T ss_pred CCCccEEEEEEEEC
Confidence 99999999888865
No 109
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.43 E-value=8.4e-13 Score=86.83 Aligned_cols=73 Identities=18% Similarity=0.335 Sum_probs=59.2
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
|.+.+.|+...+.+|+.++|.|.+.+.|.+ .+.|++||..+.. ....|.|.++ .+|+|.|+|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~---------------~~~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET---------------TTNSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec---------------cCCeEEEeec-ccCCEEeEEE
Confidence 456677777889999999999999998764 7999999987731 2567899999 9999999999
Q ss_pred EEeCCcceEE
Q psy16652 353 AANKYGSAQK 362 (384)
Q Consensus 353 a~n~~g~~~~ 362 (384)
|.|..-+...
T Consensus 65 a~~~~~S~~v 74 (78)
T cd05752 65 TQGSSLSDPV 74 (78)
T ss_pred CCCCcCCCCE
Confidence 9987444333
No 110
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.43 E-value=5e-13 Score=89.82 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=57.2
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCE---Ee-cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGV---QI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
|+.+.|.|.+.|.|.|.+.|++++. .+ .......... .......|.|.+++.+|+|.|.|.|.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNV----VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCE----EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 6789999999999999999999742 11 1111100000 00124689999999999999999999999999999
Q ss_pred EEEEE
Q psy16652 364 IELFD 368 (384)
Q Consensus 364 ~~l~v 368 (384)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 98875
No 111
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.43 E-value=7.1e-13 Score=85.90 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=57.0
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|.. ...+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 4689999999999999999998876654455566789999999999999999999988874 45555544
No 112
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.42 E-value=1.7e-12 Score=85.49 Aligned_cols=68 Identities=22% Similarity=0.489 Sum_probs=50.2
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC----CCCeEEEEEEEeCCcceEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER----RQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~~ 363 (384)
+.|.|.+.|.|.|++.|+++|.++........... ...++|.|..+.. .|.|.|+|.|.|..|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-----~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-----PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-----CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 46899999999999999999998743332221110 1356788877764 37899999999999987653
No 113
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.42 E-value=1.6e-12 Score=85.63 Aligned_cols=72 Identities=28% Similarity=0.438 Sum_probs=58.3
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
|+++.|.|.+.|.|.|+++|++++..+.... .....+..|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 6789999999999999999999988764321 123345689999999999999999999999886 55555554
No 114
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.42 E-value=3.2e-12 Score=87.68 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=58.7
Q ss_pred CeEEecCCCcccc---cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEE
Q psy16652 274 PVITINRPRQGQA---LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQY 349 (384)
Q Consensus 274 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y 349 (384)
|.+...+....+. .++.+.|.|.+.|.|.|.+.|++++..+.......... ....|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEE
Confidence 3444444443332 33579999999999999999999999884332222221 34678898876 4899999
Q ss_pred EEEEEeCCcceEE
Q psy16652 350 ACKAANKYGSAQK 362 (384)
Q Consensus 350 ~C~a~n~~g~~~~ 362 (384)
+|.|+|..|...+
T Consensus 75 ~C~a~N~~G~~~S 87 (91)
T cd04967 75 QCLASNIVGTVLS 87 (91)
T ss_pred EEEEEcCCCEEEe
Confidence 9999999997654
No 115
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.42 E-value=1.3e-12 Score=86.40 Aligned_cols=67 Identities=22% Similarity=0.516 Sum_probs=50.9
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC----CCCeEEEEEEEeCCcceEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER----RQFGQYACKAANKYGSAQK 362 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 362 (384)
+.|.|.+.|.|.|++.|+++|..+.......+... ...+.|.|..+.. +|+|.|.|.|+|..|...+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-----~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-----PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-----CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 46899999999999999999998854332222111 1356788888754 6899999999999997654
No 116
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.41 E-value=5e-12 Score=84.88 Aligned_cols=81 Identities=15% Similarity=0.189 Sum_probs=59.0
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc--ceEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG--SAQKEIE 365 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~ 365 (384)
|+.++|.|.+.+.|.+.+.|+++++......... ...........+.|.|.+++.+|+|.|.|.|+|..+ ...+++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEV-EEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEE-EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 6889999999999999999999876432111100 011111122357899999999999999999999877 6777888
Q ss_pred EEEe
Q psy16652 366 LFDR 369 (384)
Q Consensus 366 l~v~ 369 (384)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 8775
No 117
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.41 E-value=4e-12 Score=86.99 Aligned_cols=79 Identities=28% Similarity=0.447 Sum_probs=62.7
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|.|.|+|.|.|..|.. ...
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~ 85 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVS 85 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEE
Confidence 344558899999999999999999999999997665433211 123589999999999999999999999885 555
Q ss_pred EEEE
Q psy16652 266 IAVE 269 (384)
Q Consensus 266 ~~l~ 269 (384)
+.|.
T Consensus 86 ~~L~ 89 (90)
T cd04972 86 VQVT 89 (90)
T ss_pred EEEe
Confidence 5554
No 118
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.41 E-value=1.8e-12 Score=84.50 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=53.7
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCce-eE-e-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IY-R-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+.|.|.+.|.|.|.+.|++++..+...... .. . + .+|.|.++..+|+|.|+|.|.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence 479999999999999999999877643222 21 1 1 279999999999999999999999986 4555554
No 119
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.40 E-value=2.4e-12 Score=85.25 Aligned_cols=72 Identities=33% Similarity=0.472 Sum_probs=59.2
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
|+.+.|.|.+.|.|.|.+.|++++..+..... .......|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 78999999999999999999999877654432 33456789999999999999999999998875 55566654
No 120
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.40 E-value=2.2e-12 Score=83.47 Aligned_cols=68 Identities=32% Similarity=0.584 Sum_probs=55.2
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+.|.|.+.|.|.|.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 4799999999999999999977665443344466789999999999999999999998875 5555554
No 121
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.40 E-value=9.7e-13 Score=87.64 Aligned_cols=69 Identities=30% Similarity=0.550 Sum_probs=51.7
Q ss_pred EEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-E
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-Q 361 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~ 361 (384)
++|.|.+.|+|.|.+.|++++.... ...++.. ....+|.|.++..+|+|.|.|.|.|..|.. .
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL--------LSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE--------ecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 4789999999999999999753221 1122221 135789999999999999999999999977 4
Q ss_pred EEEEEE
Q psy16652 362 KEIELF 367 (384)
Q Consensus 362 ~~~~l~ 367 (384)
..+.|.
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 555554
No 122
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.40 E-value=8.2e-12 Score=86.72 Aligned_cols=95 Identities=21% Similarity=0.330 Sum_probs=66.6
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.|...+....+..|+.++|.|.+.+.|.+.++|++++...... . ....+++.+.. ......|.|.++
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~-------~--~~~~~~~~v~~--~~~~~~L~I~~v 70 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSE-------E--KTLDGHIVVRS--HARVSSLTLKYI 70 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCC-------c--cccCccEEEEc--CccEEEEEEecC
Confidence 467777776666777899999999999998999999976532110 0 01123444333 233467999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELI 178 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 178 (384)
+.+|+|.|+|.+.|..+ ..+..+.|.
T Consensus 71 ~~~D~G~Y~C~A~N~~G-~~~~~~~l~ 96 (97)
T cd05869 71 QYTDAGEYLCTASNTIG-QDSQSMYLE 96 (97)
T ss_pred ccCcCEEEEEEEecCCC-CeeEEEEEE
Confidence 99999999999986554 455555554
No 123
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.40 E-value=4.1e-12 Score=88.10 Aligned_cols=81 Identities=31% Similarity=0.541 Sum_probs=65.2
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-ee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SI--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
....+..|+.+.|.|.+.|.|.+.+.|++++..+..... .. ..++.|.|.++..+|+|.|+|.|.|..|.. ...+.
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 89 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIH 89 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEE
Confidence 345688999999999999999999999999877654422 21 134579999999999999999999999985 66777
Q ss_pred EEEEe
Q psy16652 268 VEVEF 272 (384)
Q Consensus 268 l~v~~ 272 (384)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 77653
No 124
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.40 E-value=2.9e-12 Score=84.37 Aligned_cols=66 Identities=24% Similarity=0.439 Sum_probs=49.8
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecC--CCceeeeeeeccCccccceEEEeecC----CCCCeEEEEEEEeCCcceEEE
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVITIE----RRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
+.|.|.+.|+|.|.+.|+++|..+.. +.++... ...++|.|..+. .+|+|.|+|.|+|..|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-------RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-------CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 36899999999999999999987642 3333321 135678888764 246999999999999977654
No 125
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.40 E-value=8.7e-12 Score=85.32 Aligned_cols=80 Identities=25% Similarity=0.511 Sum_probs=60.6
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
..+..+.+|+++.|.|.+.+.+.+.+.|++.+... +..+......+.|+.+... ......|.|.+++.+|+|.
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~------~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~nV~~~D~G~ 76 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT------LYFGEKRALRDNRIQLVKS-TPTELIISISNVQLSDEGE 76 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccE------EEeCCeEEEeCCeEEEEeC-CCceEEEEECCCCcccCEE
Confidence 45677899999999999999888899999987531 1222223344567765543 3356799999999999999
Q ss_pred EEEEEEE
Q psy16652 159 YKCEVII 165 (384)
Q Consensus 159 Y~C~~~~ 165 (384)
|+|.+..
T Consensus 77 YtC~~~t 83 (95)
T cd05882 77 YTCSIFT 83 (95)
T ss_pred EEEEEEe
Confidence 9999975
No 126
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=2e-12 Score=82.93 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=51.1
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.|.|.+.|.|.|.+.|++++..+... .....+..|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-CEEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence 368999999999999999999887653 233345689999999999999999999998865
No 127
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.40 E-value=2.7e-12 Score=83.33 Aligned_cols=69 Identities=25% Similarity=0.522 Sum_probs=55.8
Q ss_pred eEEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 200 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
++.|.|.+.|.|.|.++|++++..+....... .....|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 47899999999999999999998776544332 345678999999999999999999999885 5555554
No 128
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.39 E-value=2.7e-12 Score=83.99 Aligned_cols=71 Identities=30% Similarity=0.531 Sum_probs=58.0
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccCceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
|+.+.|.|.+.|.|.+.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 68899999999999999999999887654433332 34689999999999999999999998875 5555554
No 129
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.39 E-value=1.9e-12 Score=84.58 Aligned_cols=68 Identities=29% Similarity=0.465 Sum_probs=53.6
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCce-eE-ecc----EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IY-RGN----ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~-~~~----~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+.|.|.+.|.|.|.+.|++++..+...... .. ... .|.|.++..+|+|.|+|.|.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 479999999999999999998877543222 22 121 69999999999999999999999986 5555554
No 130
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.39 E-value=5e-12 Score=86.02 Aligned_cols=80 Identities=33% Similarity=0.521 Sum_probs=64.2
Q ss_pred CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCce--eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652 190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGS--IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 266 (384)
+....+.+|+++.|.|.+ .+.|.+.+.|++++..+...... ....+.|.|.+++.+|+|.|+|.+.|..|...+..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 455678899999999998 78899999999998776653222 223568999999999999999999999888666665
Q ss_pred EEE
Q psy16652 267 AVE 269 (384)
Q Consensus 267 ~l~ 269 (384)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
No 131
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.39 E-value=5.6e-12 Score=86.39 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=63.0
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE---e--ccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---R--GNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
+..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+........ . ...|.|.++..+|+|.|+|.+.|..|.. +.
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-ee
Confidence 5667899999999999999999999999999877655433221 1 1379999999999999999999998875 55
Q ss_pred EEEEE
Q psy16652 265 NIAVE 269 (384)
Q Consensus 265 ~~~l~ 269 (384)
.+.|.
T Consensus 87 ~~~v~ 91 (92)
T cd05891 87 DVTVS 91 (92)
T ss_pred EEEEE
Confidence 55543
No 132
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.39 E-value=3.8e-12 Score=86.34 Aligned_cols=77 Identities=25% Similarity=0.429 Sum_probs=61.5
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... . .....|.|.++..+|+|.|+|.+.|..|.. ...+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence 45788999999999999999999999998877544321 1 123479999999999999999999999875 55666
Q ss_pred EEE
Q psy16652 268 VEV 270 (384)
Q Consensus 268 l~v 270 (384)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 543
No 133
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=4.5e-12 Score=85.28 Aligned_cols=75 Identities=27% Similarity=0.317 Sum_probs=59.7
Q ss_pred ceEEEEEEecccCCC--eEEEEeCCCcccccC--cee------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 199 QTVYLYCYANGFPAP--TISWRRDNSAALSTG--GSI------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 199 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+.+.|.|.+.|.|.| .+.|++++..+.... ... ...+.|.|.+++.+|+|.|+|.|.|..|.. ++.+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence 468999999998876 689999987664321 111 124689999999999999999999999876 778888
Q ss_pred EEEecC
Q psy16652 269 EVEFAP 274 (384)
Q Consensus 269 ~v~~~p 274 (384)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888765
No 134
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.38 E-value=3.5e-12 Score=81.91 Aligned_cols=67 Identities=27% Similarity=0.483 Sum_probs=52.9
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
|+.+.|.|.+.|.|.|.+.|++++..+............|.|.++. |+|.|+|.|.|..|.. ..++.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~-~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMI-EATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEE-EEEEE
Confidence 6789999999999999999999998765544333345578898874 7899999999998875 44433
No 135
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.38 E-value=3.5e-12 Score=84.39 Aligned_cols=75 Identities=24% Similarity=0.431 Sum_probs=59.6
Q ss_pred CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+....+.+|+++.|.|.+.|.|.| .+.|++++..+... .....+.|.|..+ .|+|.|.|.|+|..|...++...|
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 556788999999999999999999 79999999876531 1224568999887 468999999999999765555544
No 136
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.38 E-value=7.7e-12 Score=84.98 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=64.8
Q ss_pred ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
.+..|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|..+..+|.|.|.|.|.|..|..+.+
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~ 80 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT 80 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence 45678999999999999999999999998886554332211 11134579999999999999999999999999888
Q ss_pred EEEEE
Q psy16652 364 IELFD 368 (384)
Q Consensus 364 ~~l~v 368 (384)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05729 81 YKVDV 85 (85)
T ss_pred EEEeC
Confidence 88764
No 137
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.38 E-value=2.6e-12 Score=83.41 Aligned_cols=69 Identities=28% Similarity=0.620 Sum_probs=56.0
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.|.|.+.|.|.|.+.|++++..+..... ....+..|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 46899999999999999999876654322 22345689999999999999999999999985 66666665
No 138
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.38 E-value=3.5e-12 Score=84.30 Aligned_cols=73 Identities=19% Similarity=0.440 Sum_probs=54.4
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCc--eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQH--YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
+.|.|.+.+ .|.+.+.|+++|..+..... ..+... .....+.|.|.+++.+|+|.|+|.|+|..|..+.++.+
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~---~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR---KKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE---eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 468999875 67789999999998854321 111110 11235679999999999999999999999998887653
No 139
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.37 E-value=1.3e-11 Score=85.87 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=66.4
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++...... .....+++.+.. ......|.|.++
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~---------~~~~~~~~~~~~--~~~~~~L~I~~v 69 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEG---------DKSLDGRIVVRG--HARVSSLTLKDV 69 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCC---------CccccceEEEeC--CccEEEEEECcC
Confidence 46665 355677899999999999999998899999976431100 001123444432 344568999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELI 178 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 178 (384)
+.+|+|.|+|.+.|..+. .+..+.|.
T Consensus 70 ~~~D~G~Y~C~a~N~~G~-~~~s~~l~ 95 (96)
T cd05732 70 QLTDAGRYDCEASNRIGG-DQQSMYLE 95 (96)
T ss_pred CcCcCEEeEEEEEeCCCC-cEEEEEEe
Confidence 999999999999976654 45666554
No 140
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.37 E-value=3.4e-12 Score=83.62 Aligned_cols=70 Identities=33% Similarity=0.553 Sum_probs=56.4
Q ss_pred EEEEEEecccCCCeEEEEeCCCccccc--Cce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALST--GGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
++|.|.+.|.|.|.+.|++++..+... ... ...++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479999999999999999998766522 222 2235689999999999999999999999987677777765
No 141
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.36 E-value=7.1e-12 Score=86.19 Aligned_cols=72 Identities=29% Similarity=0.500 Sum_probs=57.9
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCcccccCc--eeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+|+.+.|.|.+.|.|.|.+.|++++..+..... ....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 578999999999999999999999987754322 23356789998874 6999999999999999876555544
No 142
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.36 E-value=1e-11 Score=85.43 Aligned_cols=81 Identities=21% Similarity=0.390 Sum_probs=59.2
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
++++.+.+|+++.|.|.+.+.+.+.+.|++.+.. .+...+.....++|+.+... .....+|.|.+++.+|+|.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~------~l~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~DsG~ 76 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSISISDVSLSDEGQ 76 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCe------EEEEcCcccccCCCEEEEEC-CCCcEEEEECcCCcccCEE
Confidence 4567789999999999999888889999964431 11112222334567766332 3456789999999999999
Q ss_pred EEEEEEEc
Q psy16652 159 YKCEVIIS 166 (384)
Q Consensus 159 Y~C~~~~~ 166 (384)
|+|.+.+.
T Consensus 77 Y~C~~~t~ 84 (95)
T cd07701 77 YTCSLFTM 84 (95)
T ss_pred EEEEeEee
Confidence 99999864
No 143
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.36 E-value=7.2e-12 Score=84.44 Aligned_cols=75 Identities=29% Similarity=0.476 Sum_probs=59.9
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
....|+++.|.|.+.+.|.|.+.|++++..+........ ....|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence 456799999999999999999999999887654433222 23579999999999999999999998874 5555554
No 144
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.36 E-value=1.2e-11 Score=84.73 Aligned_cols=71 Identities=27% Similarity=0.397 Sum_probs=57.6
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccc-cCceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
|..+.|.|.+.|.|.|.++|++++..+.. .......++.|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45799999999999999999999877643 23344557789999885 6899999999999999876666555
No 145
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.35 E-value=8.7e-12 Score=87.67 Aligned_cols=97 Identities=22% Similarity=0.295 Sum_probs=65.1
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE--e
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI--K 149 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~ 149 (384)
+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++........ ....+..... .+....+.+ .
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~---------~~~~~~~~~~--~~~~~~~~i~~~ 69 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKD---------DPRSHRIVLP--SGSLFFLRVVHG 69 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccC---------CCCcceEEec--CCcEEEEEeecc
Confidence 47788888889999999999999999999889999998754211000 0011111111 111222222 3
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.++.+|+|.|+|.+.|..+...+..+.|.|
T Consensus 70 ~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 70 RKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 347899999999999877766777777765
No 146
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=2.7e-12 Score=84.40 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=57.7
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
|.+++.|+...+.+|++|+|.|.+.+.+. ..+.|++++... . .....|.|.++
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l---------------~-----------~~~~~l~i~~~ 54 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLL---------------E-----------TTTNSYRIRAA 54 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEe---------------e-----------ccCCeEEEeec
Confidence 46777888888999999999999988664 579999987531 0 01236899999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.+|+|.|+|.+.+. ..+..+.|.|
T Consensus 55 -~~dsG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 55 -NNDSGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred -ccCCEEeEEECCCC---cCCCCEEEeC
Confidence 99999999998642 4555555543
No 147
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.35 E-value=2.3e-11 Score=86.04 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=61.7
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCcccccCcee---------EeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEE
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---------YRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNI 266 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~ 266 (384)
.|..+.|.|.+.|.|.+.+.|++++..+....... ...+.|.|.++. .+|.|.|+|.|.|..|.. ...+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEE
Confidence 56899999999999999999999987765332211 113579999997 589999999999999986 7788
Q ss_pred EEEEEecC
Q psy16652 267 AVEVEFAP 274 (384)
Q Consensus 267 ~l~v~~~p 274 (384)
.|.+...|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88887665
No 148
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.35 E-value=6.9e-12 Score=84.81 Aligned_cols=75 Identities=23% Similarity=0.254 Sum_probs=59.8
Q ss_pred ceEEEEEEecccCCC--eEEEEeCCCcccccCc-----e---eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 199 QTVYLYCYANGFPAP--TISWRRDNSAALSTGG-----S---IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 199 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~-----~---~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+++.|.|.+.+.|.+ .+.|++++..+..... . ....+.|.|.+++.+|+|.|+|.|.|..+.. +....|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence 468999999988877 6799999887653321 1 1135689999999999999999999988875 778889
Q ss_pred EEEecC
Q psy16652 269 EVEFAP 274 (384)
Q Consensus 269 ~v~~~p 274 (384)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 888776
No 149
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.35 E-value=9.6e-12 Score=81.73 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=55.5
Q ss_pred eEEEEEEecccCCCeEEEEeCCCcccccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 200 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
++.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 378999999999999999999987744433322 24589999999999999999999998875 5555554
No 150
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.34 E-value=4.6e-12 Score=81.79 Aligned_cols=67 Identities=31% Similarity=0.590 Sum_probs=53.9
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+.|.|.+.|.|.|.+.|++++..+....... ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 4799999999999999999987765443332 246789999999999999999999999885 444433
No 151
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.34 E-value=1e-11 Score=85.96 Aligned_cols=81 Identities=31% Similarity=0.547 Sum_probs=62.9
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCC-----CCCCCeEEEEEEEeC-CCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNI-----TKTDRGTYYCVAQNG-VGR 260 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~d~G~Y~C~~~~~-~~~ 260 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... ....++.+.|.++ ..+|.|.|+|.+.|. .|.
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~ 85 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS 85 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence 4456678899999999999999999999999987754432 2233456777665 688999999999999 888
Q ss_pred ceeeEEEEEE
Q psy16652 261 GMKRNIAVEV 270 (384)
Q Consensus 261 ~~~~~~~l~v 270 (384)
..++.+.|.|
T Consensus 86 ~~s~~~~l~v 95 (95)
T cd05722 86 IVSRTARLTV 95 (95)
T ss_pred EEEeeeEEeC
Confidence 7677776653
No 152
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=2e-11 Score=84.02 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=57.2
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccC--ceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG--GSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
|+++.|.|.+.|.|.+.++|++++..+.... .....++.|.|.++. .+|+|.|+|.|+|..|...++.+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 4689999999999999999999998775332 333456789998765 6999999999999999876666554
No 153
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.34 E-value=8.5e-12 Score=82.88 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=59.9
Q ss_pred ceEEEEEEecc--cCCCeEEEEeCCCccccc--Ccee-E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 199 QTVYLYCYANG--FPAPTISWRRDNSAALST--GGSI-Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 199 ~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~--~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+++.|.|.+.+ .+++.+.|++++..+... .... . ..+.|.|.+++.+|+|.|+|.|.|..+.. +....|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 46899999965 456799999999888532 2222 1 24579999999999999999999998876 788889
Q ss_pred EEEecC
Q psy16652 269 EVEFAP 274 (384)
Q Consensus 269 ~v~~~p 274 (384)
.|..||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 998876
No 154
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.34 E-value=4.4e-12 Score=81.48 Aligned_cols=60 Identities=25% Similarity=0.324 Sum_probs=49.2
Q ss_pred EEEEEEecccCCCeEEEEeCCCccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.|.|.+.|.|.|++.|++++.++... ......+.+|.|.++..+|+|.|+|.+.+....
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN 61 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence 368999999999999999999876554 223344568999999999999999999996443
No 155
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.33 E-value=1.5e-11 Score=84.18 Aligned_cols=75 Identities=32% Similarity=0.491 Sum_probs=59.3
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCccc--------ccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAAL--------STGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
|+.+.|.|.+.+.|.|.+.|++++.... ...... ..+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence 6889999999999999999999876431 111111 235689999999999999999999999986 667888
Q ss_pred EEEec
Q psy16652 269 EVEFA 273 (384)
Q Consensus 269 ~v~~~ 273 (384)
.|...
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 87654
No 156
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.33 E-value=1.2e-11 Score=81.03 Aligned_cols=68 Identities=28% Similarity=0.396 Sum_probs=53.3
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCc-eeE-ec----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGG-SIY-RG----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~-~~----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+.|.|.+.|.|.|.+.|++++..+..... ... .. .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 47999999999999999999987764322 211 11 269999999999999999999999876 5555554
No 157
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.33 E-value=8.7e-12 Score=82.35 Aligned_cols=70 Identities=30% Similarity=0.592 Sum_probs=54.7
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCce-e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v 270 (384)
++|.|.+.|.|.|.+.|++++..+...... . .....|.|.++..+|+|.|+|.+.|..|... +..++|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 479999999999999999998876544321 1 1245899999999999999999999988753 34566555
No 158
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.33 E-value=3.1e-11 Score=86.16 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=66.1
Q ss_pred eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
..+..+.+.+|++|+|.|.+...+...+.|++.........+............+|+.+..+.....+.|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 34566778999999999999876777999999764322222222222222245678888776567889999999999999
Q ss_pred eeEEEEEEEc
Q psy16652 157 GIYKCEVIIS 166 (384)
Q Consensus 157 G~Y~C~~~~~ 166 (384)
|.|.|.+.+.
T Consensus 83 G~Y~C~~~~~ 92 (109)
T cd04983 83 AVYFCALSES 92 (109)
T ss_pred EEEEEEEecC
Confidence 9999999754
No 159
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.32 E-value=1.5e-11 Score=84.15 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=60.2
Q ss_pred ceEEeecCceEEEEEEecc-----cCCCeEEEEeCCCccccc----CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 191 RSVIVSEGQTVYLYCYANG-----FPAPTISWRRDNSAALST----GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
....+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ......+..|.|.++..+|+|.|+|.+.|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 3456789999999999988 678899999998654321 1222346789999999999999999999988775
Q ss_pred eeeEEEEE
Q psy16652 262 MKRNIAVE 269 (384)
Q Consensus 262 ~~~~~~l~ 269 (384)
+..+.|.
T Consensus 87 -~~~~~L~ 93 (94)
T cd05756 87 -KVSISLT 93 (94)
T ss_pred -EEEEEEE
Confidence 4455544
No 160
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.31 E-value=1.5e-11 Score=81.50 Aligned_cols=67 Identities=22% Similarity=0.369 Sum_probs=52.0
Q ss_pred cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652 87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166 (384)
Q Consensus 87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 166 (384)
|+++.|.|.+.+.|.+.+.|++++... ....++.+.. ......|.|.+++.+|+|.|+|.+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 64 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHV--------------PDSARVSITS--EGGYGTLTIRDVKESDQGAYTCEAINT 64 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeEC--------------CCCCCEEEEE--CCCEEEEEECCCChHHCEEEEEEEEec
Confidence 789999999999999999999876431 1223444443 344568999999999999999999876
Q ss_pred cCc
Q psy16652 167 LNN 169 (384)
Q Consensus 167 ~~~ 169 (384)
.+.
T Consensus 65 ~G~ 67 (78)
T cd05743 65 RGM 67 (78)
T ss_pred CCE
Confidence 554
No 161
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.31 E-value=1.4e-11 Score=83.32 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=61.8
Q ss_pred CCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 280 RPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
|....+.+|+.++|.|.+.+ .|.+.+.|++++..+.... ....+.|.|.+++.+|+|.|.|.|.|..|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~-----------~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 76 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA-----------MDFNGILTIRNVQLSDAGTYVCTGSNMLD 76 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc-----------cccCCEEEECCCCHHHCEEEEEEEeccCC
Confidence 34456789999999999975 6888999999987653211 01356899999999999999999999999
Q ss_pred ceEEEEEE
Q psy16652 359 SAQKEIEL 366 (384)
Q Consensus 359 ~~~~~~~l 366 (384)
...++..|
T Consensus 77 ~~~~~~~l 84 (85)
T cd05754 77 TDEATATL 84 (85)
T ss_pred eEeEEEEE
Confidence 99988776
No 162
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.31 E-value=2e-11 Score=81.38 Aligned_cols=68 Identities=21% Similarity=0.388 Sum_probs=55.8
Q ss_pred CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
|....+..|+++.|.|.+.+ |.+.+.|++||.++..+. ++.+ ....|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~---------~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL---------YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE---------ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 45567789999999999865 678999999999997653 3322 24569999999999999999999985
No 163
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.29 E-value=2.4e-11 Score=79.50 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=52.5
Q ss_pred EEEEEecccCCCeEEEEeCCCcccccCcee---------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 202 YLYCYANGFPAPTISWRRDNSAALSTGGSI---------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 202 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
-|.|.+.|.|.|+++|++++..+....... .....|.|.++..+|+|.|+|.|+|..|.. ++++.+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 76 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA 76 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence 378999999999999999998886543321 123479999999999999999999999976 555544
No 164
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=2.6e-11 Score=79.65 Aligned_cols=71 Identities=28% Similarity=0.552 Sum_probs=55.0
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcc-cccCc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAA-LSTGG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
|+.+.|.|.+.|.|.|.+.|++++... ..... .....++|.|..+..+|+|.|+|.|.|..|.. +..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence 688999999999999999999754333 32222 22356789999999999999999999998875 5555554
No 165
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.29 E-value=2.7e-11 Score=80.37 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=52.3
Q ss_pred EEEEEecccCCCeEEEEeCCCcccccCceeE-----------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIY-----------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 202 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
-|.|.+.|.|.|.++|++++..+........ ....|.|.+++.+|+|.|+|.|.|..|.. +..+.+
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 78 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA 78 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence 3789999999999999999988765542211 13469999999999999999999999986 454444
No 166
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.28 E-value=1.7e-11 Score=79.95 Aligned_cols=69 Identities=33% Similarity=0.617 Sum_probs=54.4
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.|.|.+.|.|.|.+.|++++..+...... ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 479999999999999999988765433221 1234689999999999999999999998875 56666655
No 167
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.27 E-value=2e-11 Score=81.62 Aligned_cols=77 Identities=26% Similarity=0.298 Sum_probs=58.3
Q ss_pred CcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652 79 SQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG 157 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 157 (384)
++...+.+|++|+|.|.+.. .+...+.|++++.... . ......|.|.+++.+|+|
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~--------------~----------~~~~~~l~I~~~~~~dsG 61 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK--------------Y----------SHSNSNLSIPQATLSDSG 61 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcc--------------c----------cCCCceEEECccCHHHCE
Confidence 44556899999999999854 4566899999764310 0 112346999999999999
Q ss_pred eEEEEEEEccCcceeeeEEEEE
Q psy16652 158 IYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 158 ~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.|+|.+.+..+...+..+.|.|
T Consensus 62 ~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 62 SYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred EEEEEEEeCCceecCCCEEEEC
Confidence 9999999887777777777764
No 168
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.27 E-value=3.8e-11 Score=80.88 Aligned_cols=83 Identities=14% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCcEEEEEEEeccCCC--eEEEEECCEEecCCCceee-eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652 288 QYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSV-SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
|+++.|.|.+.+.+.+ .+.|.+++........... ...........+.|.|.+++.+|+|.|+|.|+|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 6789999999876544 7899988764421110000 000001122457899999999999999999999999999999
Q ss_pred EEEEee
Q psy16652 365 ELFDRE 370 (384)
Q Consensus 365 ~l~v~~ 370 (384)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 998864
No 169
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.27 E-value=2.9e-11 Score=79.60 Aligned_cols=69 Identities=29% Similarity=0.553 Sum_probs=53.0
Q ss_pred EEEEEEecccCCCeEEEEeCCCccccc--C-cee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALST--G-GSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~--~-~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.|.|.+.|.|.|.++|++++...... . ... ..+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 468999999999999999988643221 1 111 234689999999999999999999998875 56666655
No 170
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.27 E-value=3.4e-11 Score=80.16 Aligned_cols=70 Identities=30% Similarity=0.638 Sum_probs=53.6
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccc--------cCce-eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALS--------TGGS-IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~--------~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
++|.|.+.|.|.|.+.|++++..... .... ...+.+|.|.++..+|+|.|.|.|.|..|...++.+.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 47999999999999999997542211 1111 2345789999999999999999999999987676666653
No 171
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.27 E-value=4e-11 Score=81.52 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=61.0
Q ss_pred cccccCCcEEEEEEEec-----cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 283 QGQALQYDAILECHVEA-----YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
+.+.+|+...|.|...+ +|.|.+.|++++.++....+.. . ....|.|.++..+|+|.|+|.|.|..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~--------~~~~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V--------KGSKLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e--------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence 34678899999998754 2577999999999987554321 1 36789999999999999999999998
Q ss_pred cceEEEEEEEEe
Q psy16652 358 GSAQKEIELFDR 369 (384)
Q Consensus 358 g~~~~~~~l~v~ 369 (384)
|.....++..+.
T Consensus 76 ~~~~~~~t~t~~ 87 (92)
T cd05757 76 NGKQYNVTRTIS 87 (92)
T ss_pred CCEEEEEEEEEE
Confidence 887766655543
No 172
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.26 E-value=3.8e-11 Score=81.98 Aligned_cols=81 Identities=15% Similarity=0.260 Sum_probs=61.2
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCc--eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC-c
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH--YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY-G 358 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g 358 (384)
...+.+|+.+.|.|.+.+ |.+.+.|++++..+..... ..... ....|.|.+++.+|+|.|.|.|.|.. +
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-------TEDGLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-------cCCCEEEccCCHHHCEEEEEEEecCccc
Confidence 345778999999999987 8889999999987755431 11111 23459999999999999999999754 5
Q ss_pred ceEEEEEEEEee
Q psy16652 359 SAQKEIELFDRE 370 (384)
Q Consensus 359 ~~~~~~~l~v~~ 370 (384)
....++.|.|.+
T Consensus 77 ~~~~~~~l~V~~ 88 (89)
T cd04979 77 QTLATYSLNVLE 88 (89)
T ss_pred eeEeEEEEEEec
Confidence 556667777754
No 173
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.26 E-value=1.2e-10 Score=79.04 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=61.2
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
.+++.+.+|++++|+|.+.+.....+.|++.+.. +.+ ........+.||..... .+...+|.|.+++.+|+|.
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~-----~i~-~~~~~~~~d~Rf~~~~~-~~~~~tL~I~~vq~~D~G~ 76 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQ-----TIY-FRDVRPLKDSRFQLVNF-SSNELRVSLSNVSLSDEGR 76 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCc-----EEE-ecCccccCCcCEEEEeC-CCCEEEEEECcCCcccCEE
Confidence 4567789999999999998877778999976632 222 22233447788887753 4567889999999999999
Q ss_pred EEEEEEE
Q psy16652 159 YKCEVII 165 (384)
Q Consensus 159 Y~C~~~~ 165 (384)
|+|++..
T Consensus 77 Y~Cqv~t 83 (95)
T cd05881 77 YFCQLYT 83 (95)
T ss_pred EEEEEEc
Confidence 9999974
No 174
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.26 E-value=9.3e-11 Score=80.06 Aligned_cols=81 Identities=19% Similarity=0.308 Sum_probs=63.1
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
+....+.+|+++.|.|.+.+ |.+.+.|++++..+.... ........|.|.++..+|+|.|+|.+.+..+.....+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 44567889999999999977 778999999987665432 2333445799999999999999999998766555666
Q ss_pred EEEEEE
Q psy16652 266 IAVEVE 271 (384)
Q Consensus 266 ~~l~v~ 271 (384)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777664
No 175
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.25 E-value=9.8e-11 Score=79.15 Aligned_cols=89 Identities=19% Similarity=0.193 Sum_probs=70.4
Q ss_pred CCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
..+.+.+|+.+.|.|.+.++|+|. +.|.+++..+.+.....+...........+.|.+..+..+|.|.|+|.|.|..++
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 345688999999999999999997 9999998876544432222222122234578999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16652 360 AQKEIELFDR 369 (384)
Q Consensus 360 ~~~~~~l~v~ 369 (384)
.+.+|.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999999875
No 176
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.24 E-value=6.4e-11 Score=80.85 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=54.0
Q ss_pred cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEee-----CCCCceEEEEEeecCCCCCeeEEE
Q psy16652 87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTT-----DPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
|+.++|.|.+.+.|.+.+.|+|++... ... +...+. ....... ........|.|.+++.+|+|.|+|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~-g~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 72 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVN-GSK--YGPDGL-----PYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTC 72 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccC-Cce--eCCCCC-----ceEEEEEecCCcccccccceEEEeccccccCcEEEE
Confidence 789999999999999999999975210 000 000000 0001110 001234579999999999999999
Q ss_pred EEEEccCcceeeeEEEEE
Q psy16652 162 EVIISLNNKVSAEVELIV 179 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~l~v 179 (384)
.+.|..+ .....+.|.|
T Consensus 73 ~A~N~~G-~~~~sa~L~V 89 (90)
T cd04974 73 LAGNSIG-PSHHSAWLTV 89 (90)
T ss_pred EeecccC-cccCCEEEEe
Confidence 9986554 4566666765
No 177
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.24 E-value=8.6e-11 Score=80.33 Aligned_cols=72 Identities=28% Similarity=0.442 Sum_probs=53.6
Q ss_pred CceEEEEEEecccCCCeEEEEeCC----CcccccCce---e-E---------eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDN----SAALSTGGS---I-Y---------RGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~---~-~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
|+.+.|.|.+.+.|.|.+.|++++ ..+...... . . ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 688999999999999999999843 222211110 0 0 1147999999999999999999999997
Q ss_pred ceeeEEEEEE
Q psy16652 261 GMKRNIAVEV 270 (384)
Q Consensus 261 ~~~~~~~l~v 270 (384)
. +.+..|.|
T Consensus 81 ~-~~~a~L~V 89 (90)
T cd05858 81 S-HHSAWLTV 89 (90)
T ss_pred c-cceEEEEE
Confidence 6 55566654
No 178
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.23 E-value=7.1e-11 Score=77.77 Aligned_cols=68 Identities=26% Similarity=0.471 Sum_probs=51.2
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccC--cee--EeccEEEEcCCCC----CCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTG--GSI--YRGNILKIPNITK----TDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+.|.|.+.|.|.|+++|++++..+.... ... ..++.|.|..+.. .|+|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 4799999999999999999987653222 122 1356788877764 378999999999999876665554
No 179
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.23 E-value=1.5e-10 Score=80.09 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=60.8
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
.+.+.+.+|++++|.|.+.+.+.+.+.|++.+.. ... ........+.||.+... ......|.|.+++.+|+|.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~-----~~~-~~~~~~~~~~r~~~~~~-~~~~~~L~I~~v~~~DsG~ 76 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQ-----TLY-FNDKRALRDNRIQLVNF-SANELSISISNVSLSDEGR 76 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCc-----EEE-eccccccccCcEEEEcC-CCCeeEEEEccCCcccCEE
Confidence 4456689999999999998777779999964321 111 11111123467766432 3455789999999999999
Q ss_pred EEEEEEEccCcceeeeEEEE
Q psy16652 159 YKCEVIISLNNKVSAEVELI 178 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~ 178 (384)
|+|.+..... .+..+.|.
T Consensus 77 Y~C~~~~~~~--~~~~~~~~ 94 (95)
T cd05717 77 YTCSLYTMPV--QTAKATVT 94 (95)
T ss_pred EEEEEecCCC--ceEEEEEE
Confidence 9999975432 34444443
No 180
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.23 E-value=1.5e-10 Score=77.73 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=55.9
Q ss_pred cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652 87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166 (384)
Q Consensus 87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 166 (384)
|++++|.|.+.+.+.+.+.|++.++.... .. ... ............+|.|.+++.+|+|.|+|.+.+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~---~~-------~~~--~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~ 68 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGK---GI-------PEV--EEVKVPATTLRSTLTFPHATVEDSGTYECAAHES 68 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCC---Cc-------eEE--EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEEC
Confidence 78999999999988899999987653110 00 000 0111111233568999999999999999999865
Q ss_pred cC-cceeeeEEEEEe
Q psy16652 167 LN-NKVSAEVELIVR 180 (384)
Q Consensus 167 ~~-~~~~~~~~l~v~ 180 (384)
.. ...+..+.|.|.
T Consensus 69 ~~~~~~~~sv~i~V~ 83 (84)
T cd05861 69 TQDQKAFKKVNITVH 83 (84)
T ss_pred ccCcceeEEEEEEEe
Confidence 44 345677777764
No 181
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.23 E-value=1.6e-10 Score=79.02 Aligned_cols=82 Identities=11% Similarity=0.246 Sum_probs=58.6
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+. .+.++.+.. .......|.|.+++.+|+|.|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC~ 80 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTCS 80 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEEE
Confidence 45667899999999999999999999998875431 122222211 111356899999999999999999
Q ss_pred EEeCCcceEEEEEEE
Q psy16652 353 AANKYGSAQKEIELF 367 (384)
Q Consensus 353 a~n~~g~~~~~~~l~ 367 (384)
+... -..++..+|.
T Consensus 81 ~~t~-~~~~~~~~~~ 94 (95)
T cd05882 81 IFTM-PVRTAKATVT 94 (95)
T ss_pred EEee-ccccEEEEEE
Confidence 9983 2444454544
No 182
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.23 E-value=9.5e-11 Score=80.56 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=58.9
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEE--------ecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ--------IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
.+..+.+|+.+.|.|.+.+.|.+.+.|++.+.. ...+.++.... ......+|.|.+++.+|+|.|.|.
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR----ASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE----CCCCcEEEEECcCCcccCEEEEEE
Confidence 456788999999999999999999999863322 22233433211 111356799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy16652 353 AANKYGSAQKEIELFD 368 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v 368 (384)
+.+..+ ...+..|.|
T Consensus 81 ~~t~~~-~~~~~~l~v 95 (95)
T cd07701 81 LFTMPV-KTSKAYLTV 95 (95)
T ss_pred eEeecC-ccEEEEEEC
Confidence 998543 355556554
No 183
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.23 E-value=5.2e-11 Score=78.62 Aligned_cols=68 Identities=28% Similarity=0.508 Sum_probs=52.0
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccC--cee--EeccEEEEcCCCC----CCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTG--GSI--YRGNILKIPNITK----TDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+.|.|.+.|.|.|+++|++++..+.... ... ..++.|.|.++.. +|+|.|+|.|.|..|...++.+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 4789999999999999999988764322 122 2356899988753 789999999999999876655543
No 184
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.22 E-value=8.1e-11 Score=78.68 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=54.5
Q ss_pred CCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 280 RPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
++...+.+|+.++|.|.+.+ .+.+.+.|+++|..+.... ....|.|..++.+|+|.|+|.|.|..|
T Consensus 6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCc
Confidence 34446789999999999854 5666899999997664211 356799999999999999999999997
Q ss_pred ce
Q psy16652 359 SA 360 (384)
Q Consensus 359 ~~ 360 (384)
..
T Consensus 73 ~~ 74 (83)
T cd05753 73 DY 74 (83)
T ss_pred ee
Confidence 54
No 185
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=7.2e-11 Score=77.73 Aligned_cols=68 Identities=26% Similarity=0.474 Sum_probs=51.0
Q ss_pred EEEEEEecccCCCeEEEEeCCCccc--ccCcee--EeccEEEEcCCC----CCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAAL--STGGSI--YRGNILKIPNIT----KTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+.|.|.+.|.|.|.++|++++..+. ...... ..+++|.|..+. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4689999999999999999987542 222222 235689888764 2469999999999999876666554
No 186
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.21 E-value=2e-10 Score=81.29 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=60.7
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
+...|....+.+|++|+|.|.+.+.. ...+.|||.........+.............|+.... ......|.|.+++.
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~~~~ 80 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSG--SGTDFTLTISRVEP 80 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEec--cCCEEEEEECCCCh
Confidence 45556677889999999999986544 5689999977543333332221111111234666543 45677899999999
Q ss_pred CCCeeEEEEEEE
Q psy16652 154 TDAGIYKCEVII 165 (384)
Q Consensus 154 ~d~G~Y~C~~~~ 165 (384)
+|+|.|.|.+.+
T Consensus 81 ~Dsg~Y~Ca~~~ 92 (106)
T cd04980 81 EDAAVYYCQQYG 92 (106)
T ss_pred HHCEEEEEEEeC
Confidence 999999999853
No 187
>PHA03376 BARF1; Provisional
Probab=99.21 E-value=4.2e-10 Score=83.28 Aligned_cols=136 Identities=17% Similarity=0.316 Sum_probs=82.5
Q ss_pred ceeeeccCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652 81 EQIKDIAQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
++.+..|+.+.|+|..... ..-.|.|+|.+... ....+...++.. .+.+++.+.. +.++.+|.|.+++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~--~~VvL~~~ggdVv~~QmEyRGrtD~~~--~~gnvsLvI~~l~ 95 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGE--EQVLIGRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAAN 95 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCC--CCEEEEEcCCeeeeeeeccccEEEEEe--cCCeEEEEEEeee
Confidence 3456899999999998632 45679999965311 223333222221 2344555544 3488999999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
.+|.|.|+|.++....+. ...-.|.+..|....... .......-+...+.|.+.|+|.|.+.|..+..
T Consensus 96 lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a-~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 96 ISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHS-ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEe-ccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 999999999998543322 111122222221111100 00011225677899998889999999987654
No 188
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.20 E-value=1.3e-10 Score=78.02 Aligned_cols=72 Identities=28% Similarity=0.480 Sum_probs=54.1
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCc---c-cccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSA---A-LSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~---~-~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
|+.+.|.|.+.|.|.|.+.|+++... . ..... .......|.|.++..+|+|.|+|.+.|..|.. +..+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence 68899999999999999999997421 1 11111 11233589999999999999999999999875 666665
Q ss_pred EE
Q psy16652 269 EV 270 (384)
Q Consensus 269 ~v 270 (384)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 43
No 189
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.20 E-value=7.1e-11 Score=79.89 Aligned_cols=72 Identities=17% Similarity=0.336 Sum_probs=56.5
Q ss_pred CcccccCCcEEEEEEE-eccCCCeEEEEECCEEe--cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 282 RQGQALQYDAILECHV-EAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
...+.+|+.+.|.|.. .|.|.+.+.|++++.++ ..+.+..+.. .++.|.|.+++.+|.|.|+|.|+|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~-------~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ-------TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC-------CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 3557889999999987 78899999999998754 2233322221 468899999999999999999999875
Q ss_pred ce
Q psy16652 359 SA 360 (384)
Q Consensus 359 ~~ 360 (384)
..
T Consensus 85 ~~ 86 (96)
T cd05727 85 TK 86 (96)
T ss_pred CC
Confidence 44
No 190
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.19 E-value=3.6e-10 Score=78.64 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=59.2
Q ss_pred CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccC--ceeEe--------ccEEEEcCCCCC-CCeEEEEEEEeC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTG--GSIYR--------GNILKIPNITKT-DRGTYYCVAQNG 257 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~--~~~~~--------~~~l~i~~~~~~-d~G~Y~C~~~~~ 257 (384)
+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.... ..... .+.|.|.++..+ |.|.|.|.|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 345668999999999999999998 699999887665432 22111 137999999984 589999999999
Q ss_pred CCCceeeEEEE
Q psy16652 258 VGRGMKRNIAV 268 (384)
Q Consensus 258 ~~~~~~~~~~l 268 (384)
.|.. ...+.|
T Consensus 88 ~G~~-~~~~~L 97 (98)
T cd05758 88 FGSG-TAIISL 97 (98)
T ss_pred CCcc-cEEEEe
Confidence 9886 444443
No 191
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.19 E-value=1.6e-10 Score=76.36 Aligned_cols=70 Identities=29% Similarity=0.525 Sum_probs=55.7
Q ss_pred EEEEEEecccCCCeEEEEeCCCcccccCc--ee-E-eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 201 VYLYCYANGFPAPTISWRRDNSAALSTGG--SI-Y-RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 201 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~-~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
+.|.|.+.|.|.|.+.|++++..+..... .. . .+..|.|.++..+|.|.|+|.+.|..|.. ...+.|.|+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 36899999999999999999887654322 11 1 23579999999999999999999998886 667777764
No 192
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.18 E-value=2.7e-10 Score=76.01 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=56.1
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+....+..|+++.|.|.+.+ +.+++.|++++..+... .........|.|.+++.+|+|.|+|.+.+.
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 45677899999999999865 56799999999887655 234455678999999999999999999986
No 193
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.18 E-value=3.5e-10 Score=80.60 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=61.2
Q ss_pred eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
..|....+.+|++|+|.|.+.+ +...+.|||......+..+......... ...+|+..... ....++|.|.+++
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~~~ 80 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRP-SLTRSSLTIKSAE 80 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECc-CCCccEEEECCCC
Confidence 4566677899999999999877 6678999998754333333322222111 12456766553 2357899999999
Q ss_pred CCCCeeEEEEEEE
Q psy16652 153 ETDAGIYKCEVII 165 (384)
Q Consensus 153 ~~d~G~Y~C~~~~ 165 (384)
.+|+|.|.|.+..
T Consensus 81 ~~Dsg~Y~Ca~~~ 93 (110)
T cd05899 81 PEDSAVYLCASSL 93 (110)
T ss_pred hhhCEEEEEEeeC
Confidence 9999999999864
No 194
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.18 E-value=1.2e-10 Score=76.79 Aligned_cols=61 Identities=25% Similarity=0.484 Sum_probs=49.6
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccCcee---E----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTGGSI---Y----RGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.|.|.+.+ .|.+.+.|++++..+....... . ....|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 469999998 8999999999988775433211 1 23579999999999999999999998875
No 195
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.18 E-value=2.6e-10 Score=76.90 Aligned_cols=72 Identities=26% Similarity=0.384 Sum_probs=54.1
Q ss_pred CceEEEEEEeccc--CCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652 198 GQTVYLYCYANGF--PAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266 (384)
Q Consensus 198 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 266 (384)
|+.+.|.|.+.+. |.+.+.|.+++........ .......|.|.+++.+|+|.|+|.+.|..+.. +.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence 7899999999987 7789999987754422111 11234589999999999999999999988775 5555
Q ss_pred EEEE
Q psy16652 267 AVEV 270 (384)
Q Consensus 267 ~l~v 270 (384)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 5544
No 196
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=99.18 E-value=3.1e-10 Score=81.89 Aligned_cols=105 Identities=20% Similarity=0.351 Sum_probs=72.5
Q ss_pred eeeeCcceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccc-eecc----CceeeeCCceEEeeCCCCceEEEEE
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLP-ISMS----GSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
++..+..+.+.+|++|.|.|... ......+.|++.........+. .... .......+++.+..+......+|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 34456777899999999999998 4456689999966643323222 1111 1112245677777766778899999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
.+++.+|+|.|.|.+...........+.|.|
T Consensus 84 ~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999998653444455555554
No 197
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.16 E-value=2.8e-10 Score=77.39 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=56.5
Q ss_pred EEeecCceEEEEEEecc-----cCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 193 VIVSEGQTVYLYCYANG-----FPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
..+.+|++..|.|...+ .|.+.+.|++++..+.........+..|.|.++..+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 45788999999998743 2567999999998877655444467899999999999999999999976654
No 198
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.16 E-value=2.9e-10 Score=72.09 Aligned_cols=63 Identities=30% Similarity=0.564 Sum_probs=51.0
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
+|+.+.|.|.+.+.|.+.+.|++++..+.. ..... .....|.|.+++.+|.|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998889999999999988761 11111 1456899999999999999999999865
No 199
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.15 E-value=4.1e-10 Score=75.43 Aligned_cols=78 Identities=27% Similarity=0.549 Sum_probs=59.2
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|.+...+ ..+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ..+.+..++.+|.|.|+|.|
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~---------------~~~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ---------------NGLFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES---------------SEEEESSEEGGGTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee---------------eeeeeeeeccccCEEEEEEE
Confidence 4554433 557889999999999999889999999987775221 12667788899999999999
Q ss_pred EeCCc-ceEEEEEEEE
Q psy16652 354 ANKYG-SAQKEIELFD 368 (384)
Q Consensus 354 ~n~~g-~~~~~~~l~v 368 (384)
.+..+ ..+.++.|.|
T Consensus 65 ~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 65 SNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCCeEeeeEEeeC
Confidence 99665 4456666654
No 200
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.15 E-value=2.9e-10 Score=77.94 Aligned_cols=68 Identities=32% Similarity=0.497 Sum_probs=53.5
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCccccc--CceeEeccEEEEcCCC-CCCCeEEEEEEEeCCCCceee
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALST--GGSIYRGNILKIPNIT-KTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
.|..+.|.|.+.|.|.+.++|++++..+... ......+..|.|.++. .+|+|.|+|.|.|..|...++
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 3467999999999999999999998776322 2333455689998876 489999999999998876443
No 201
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.15 E-value=4.5e-10 Score=79.60 Aligned_cols=85 Identities=25% Similarity=0.374 Sum_probs=60.7
Q ss_pred eeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCc---eeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 83 IKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGS---LIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
.+.+|++|+|.|.+... +...+.|++.........+....... .....+|+.+..+......+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46899999999999875 67789999977643222222222211 123456777776544478899999999999999
Q ss_pred EEEEEEEcc
Q psy16652 159 YKCEVIISL 167 (384)
Q Consensus 159 Y~C~~~~~~ 167 (384)
|.|.+.+..
T Consensus 82 Y~C~v~~~~ 90 (105)
T cd00099 82 YYCAVSLSG 90 (105)
T ss_pred EEEEEecCC
Confidence 999997544
No 202
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.14 E-value=7.6e-10 Score=79.70 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=63.4
Q ss_pred eeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
...+..+.+.+|++|+|.|..... ....+.|++.........+............+|+.+..+......+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 445667778999999999998653 4567999997654322222222121112335788887654566789999999999
Q ss_pred CCeeEEEEEEE
Q psy16652 155 DAGIYKCEVII 165 (384)
Q Consensus 155 d~G~Y~C~~~~ 165 (384)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999874
No 203
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.14 E-value=1.9e-10 Score=78.11 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=53.9
Q ss_pred eeeccCcEEEEEEeecCCCccEEEEEeCCCC-CCc-ccceeccCceeeeCCceEEeeCC-CCceEEEEEeecCCCCCeeE
Q psy16652 83 IKDIAQTADLKCSVQYADDYPVIWMKMDTAK-KME-PLPISMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y 159 (384)
.+.+|++|+|.|.+.+.+.+.+.|++.+... ... ...+... .....+|+...... ..+.+.|.|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~--~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKG--PSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEec--ccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 4689999999999988888899999765321 100 0111100 01234455544421 34567899999999999999
Q ss_pred EEEEEE
Q psy16652 160 KCEVII 165 (384)
Q Consensus 160 ~C~~~~ 165 (384)
+|.+.+
T Consensus 81 ~C~v~~ 86 (94)
T cd07690 81 ICEVED 86 (94)
T ss_pred EEEECC
Confidence 999864
No 204
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=99.13 E-value=1.4e-09 Score=77.73 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=58.5
Q ss_pred CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCC-CcccceeccCcee----eeCCceEEeeCCCCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKK-MEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+..+.+.+|++++|.|.+...+ ...+.|++...... ...+......... ...+|+.+..+...+..+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556689999999999986532 24699987532211 1222222222111 2234555555555677889999
Q ss_pred ecCCCCCeeEEEEEEEccC
Q psy16652 150 EIQETDAGIYKCEVIISLN 168 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~ 168 (384)
+++.+|+|.|+|.+.+...
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eCChhhCEEEEEEEEeCCC
Confidence 9999999999999986544
No 205
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.13 E-value=5.2e-10 Score=76.09 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=57.6
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECCE--Ee----cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE-e
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDGV--QI----MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA-N 355 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n 355 (384)
+...+|+.+.|.|.. +.|.|.+.|++.+. .. ....+... ....|.|..++.+|+|.|+|.|. |
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~~ 75 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVEH 75 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEcc
Confidence 346789999999996 47889999998432 21 11222221 34569999999999999999998 5
Q ss_pred CCcceEEEEEEEEee
Q psy16652 356 KYGSAQKEIELFDRE 370 (384)
Q Consensus 356 ~~g~~~~~~~l~v~~ 370 (384)
..+....+++|.|.+
T Consensus 76 ~~~~~~~~~~l~v~~ 90 (91)
T cd05871 76 SFSQTLAKYTLHVIE 90 (91)
T ss_pred CCeEEEEEEEEEEec
Confidence 777777788888764
No 206
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.13 E-value=1.9e-09 Score=76.59 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=62.7
Q ss_pred CcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCc-ccceeccCcee-----eeCCceEEeeCCCCceEEEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKME-PLPISMSGSLI-----IHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i 148 (384)
+..+.+..|+.++|.|.++.. +...+.|.+........ .+.....+... ...+|+.+..+...+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 456678999999999999663 34589996544322212 23333332222 223588887777778889999
Q ss_pred eecCCCCCeeEEEEEEEccC
Q psy16652 149 KEIQETDAGIYKCEVIISLN 168 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~ 168 (384)
.+++.+|+|.|+|.+.+...
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999986654
No 207
>smart00409 IG Immunoglobulin.
Probab=99.12 E-value=1.6e-09 Score=73.53 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=65.7
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+....... ....|.|.+++.+|+|.|.|.+.+..+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 34567899999999999888889999998 8777645554443211 14679999999999999999999999988
Q ss_pred EEEEEEEE
Q psy16652 361 QKEIELFD 368 (384)
Q Consensus 361 ~~~~~l~v 368 (384)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00409 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 88887776
No 208
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.12 E-value=1.6e-09 Score=73.53 Aligned_cols=82 Identities=28% Similarity=0.500 Sum_probs=65.7
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+....... ....|.|.+++.+|+|.|.|.+.+..+..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-----SNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-----CeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 34567899999999999888889999998 8777645554443211 14679999999999999999999999988
Q ss_pred EEEEEEEE
Q psy16652 361 QKEIELFD 368 (384)
Q Consensus 361 ~~~~~l~v 368 (384)
...+.|.|
T Consensus 78 ~~~~~l~V 85 (86)
T smart00410 78 SSTTTLTV 85 (86)
T ss_pred EEEEEEEE
Confidence 88887776
No 209
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.12 E-value=3.1e-10 Score=78.23 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=56.4
Q ss_pred cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
|++|+|.|.........+.|++.........+........... .+|+.+.. +.+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~-----~~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP-----NGSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC-----CceEEEccCCchhcEEEEEE
Confidence 7899999998776677899999875432221111111122222 23444432 26899999999999999999
Q ss_pred EEEccCcceeeeEEEE
Q psy16652 163 VIISLNNKVSAEVELI 178 (384)
Q Consensus 163 ~~~~~~~~~~~~~~l~ 178 (384)
+....+......+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 9866555555555554
No 210
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=99.12 E-value=1.2e-09 Score=78.85 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=61.8
Q ss_pred eCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+..+.+.+|++|+|.|.+.+ .+...+.|++......+..+......... ....|+.+..+.....+.|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 455667899999999999876 46678999998654333333322221111 13467877765444788999999
Q ss_pred cCCCCCeeEEEEEE
Q psy16652 151 IQETDAGIYKCEVI 164 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~ 164 (384)
++.+|+|.|.|.+.
T Consensus 84 ~~~~Dsg~Y~C~~~ 97 (116)
T cd04982 84 LEKEDSATYYCAYW 97 (116)
T ss_pred CCHHHCEEEEEEEe
Confidence 99999999999985
No 211
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=99.11 E-value=9.2e-10 Score=76.60 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=57.0
Q ss_pred eeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 83 IKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
.+.+|++|+|.|..... ....+.||+.........+............+|+.... ......|.|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSK--SGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEc--cCCEEEEEECCCChhhCEEEE
Confidence 46899999999998664 45679999987654434333322221112245777655 446788999999999999999
Q ss_pred EEEEE
Q psy16652 161 CEVII 165 (384)
Q Consensus 161 C~~~~ 165 (384)
|.+.+
T Consensus 80 C~~~~ 84 (98)
T cd04984 80 CQVWD 84 (98)
T ss_pred EEEcc
Confidence 99863
No 212
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=99.11 E-value=2e-09 Score=77.36 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCc-ccceeccCc-----eeeeCCceEEeeCCCCceEEEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKME-PLPISMSGS-----LIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
|..+.+.+|++|+|.|.+.... ...+.|++........ .+.....+. .....+|+.+..+...+..+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 5566789999999999986532 2469999865432212 222221111 11223566666555566789999
Q ss_pred eecCCCCCeeEEEEEEEccC
Q psy16652 149 KEIQETDAGIYKCEVIISLN 168 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~ 168 (384)
.+++.+|+|.|.|.+.+...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999986543
No 213
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.11 E-value=7.9e-10 Score=74.74 Aligned_cols=70 Identities=33% Similarity=0.483 Sum_probs=56.6
Q ss_pred CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+....+.+|+.++|.|.+.+ .|.+.+.|++++..+.. .....+..|.|.+++.+|+|.|.|.+.|..|..
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 45567889999999999864 67789999998865432 222345789999999999999999999988765
No 214
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=99.10 E-value=1.9e-09 Score=74.96 Aligned_cols=92 Identities=23% Similarity=0.400 Sum_probs=62.3
Q ss_pred CcEEEEEEeecCC---CccEEEEEeCCCCCCcccce-ecc-Ccee--eeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 88 QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPI-SMS-GSLI--IHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 88 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~-~~~-~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
.+|+|.|...... ...|.|++.........+.. ... +... ...+|..+..+......+|.|.+++.+|+|.|+
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999987543 45899999654433323322 111 1111 123577776654556778999999999999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy16652 161 CEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 161 C~~~~~~~~~~~~~~~l~v 179 (384)
|.+.+...+..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 9998766666677777766
No 215
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.09 E-value=7e-10 Score=72.26 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=49.9
Q ss_pred cEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 290 DAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 290 ~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
.+.|+|... +.|++.++||++++++..... ...........++|.+...+.+|.+.|+|.|.|..+..
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 368999995 588889999999999964321 11111111134579999999999999999999998764
No 216
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.09 E-value=4.7e-10 Score=77.56 Aligned_cols=90 Identities=17% Similarity=0.286 Sum_probs=61.1
Q ss_pred eccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceecc----CceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 85 DIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMS----GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 85 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
..|++|+|.|.... .....+.|++... ...+... .......++|+.+........+|.|.+++.+|+|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~-----~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y 76 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTS-----LAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSY 76 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCE-----eEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEE
Confidence 46999999998865 4566899999732 1222221 222233444443333344567899999999999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy16652 160 KCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v 179 (384)
+|.+....+......+.|.|
T Consensus 77 ~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 77 RAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEEEcCCCCeEEEEEEEEe
Confidence 99998766666677777766
No 217
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=99.07 E-value=1.3e-09 Score=76.00 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=60.5
Q ss_pred eeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 82 QIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
+.+.+|++|+|.|.... .....+.|++.........+. ..........+|+.+..+...+...|.|.+++.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIV-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEE-CCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence 35789999999999865 346679999977654333222 2222223346788887666678899999999999999999
Q ss_pred EEEEE
Q psy16652 161 CEVII 165 (384)
Q Consensus 161 C~~~~ 165 (384)
|.+..
T Consensus 81 C~~~~ 85 (98)
T cd05716 81 CGVGD 85 (98)
T ss_pred EEccc
Confidence 99864
No 218
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.07 E-value=8.7e-10 Score=76.63 Aligned_cols=98 Identities=14% Similarity=0.056 Sum_probs=61.6
Q ss_pred eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccC-ceee----eCCceEEeeCCCCceEEEEEee
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG-SLII----HDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
++++.+..+.+|++|.|.|.........+.|+|.........+...... .... ..+|..+.. +.+|.|.+
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-----ngSL~I~~ 76 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-----NGSLLIQN 76 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-----CCcEEEec
Confidence 3445566678999999999876555668999996443222222211111 1111 234544443 33799999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEE
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELI 178 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 178 (384)
++.+|+|.|+|.+.+.........+.|.
T Consensus 77 v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 77 VTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999999865544444444443
No 219
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.07 E-value=2.2e-09 Score=72.78 Aligned_cols=76 Identities=29% Similarity=0.470 Sum_probs=58.3
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
..+..|+.+.|.|.+.+.|.+.+.|++++..+....... .....|.|.++..+|+|.|.|.+.|..|.. +.++.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence 446789999999999998989999999887655332221 112468999999999999999999988764 55555
Q ss_pred EE
Q psy16652 268 VE 269 (384)
Q Consensus 268 l~ 269 (384)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 44
No 220
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.06 E-value=8.6e-10 Score=74.94 Aligned_cols=76 Identities=11% Similarity=0.108 Sum_probs=54.3
Q ss_pred ccccCCcEEEEEEEeccCCCeEEEEECCEEecCC--------------CceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN--------------QHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
.+.+|+.++|.|.+.+.+.+.+.|+++++....+ .++.... .........|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEEE
Confidence 3568999999999999899999999876432211 1111111 01112345699999999999999
Q ss_pred EEEEEeCCcceE
Q psy16652 350 ACKAANKYGSAQ 361 (384)
Q Consensus 350 ~C~a~n~~g~~~ 361 (384)
.|.+.|..+..+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999987654
No 221
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.05 E-value=3.7e-09 Score=74.77 Aligned_cols=93 Identities=24% Similarity=0.439 Sum_probs=58.9
Q ss_pred ccCcEEEEEEeecC------CCccEEEEEeCCCCCCc-ccceeccCceee---eCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652 86 IAQTADLKCSVQYA------DDYPVIWMKMDTAKKME-PLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQETD 155 (384)
Q Consensus 86 ~g~~v~l~C~~~~~------~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d 155 (384)
.|++|+|.|.+... ....+.|++........ .+.....+.... ...|+.+. ....+..+|.|.+++.+|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~~v~~sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLY-PADPGDASLVITDLRLED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEee-CCCCCcceEEECCCCHHH
Confidence 48999999998764 25689999985221112 222222221111 11222221 225577899999999999
Q ss_pred CeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 156 AGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 156 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+|.|+|.+.+. .+.....+.|.|.
T Consensus 80 ~G~Y~C~v~~~-~~~~~~~v~L~V~ 103 (106)
T cd05714 80 SGRYRCEVIDG-IEDEQDTVELEVR 103 (106)
T ss_pred CEEEEEEEEcC-CCceEEEEEEEEE
Confidence 99999999854 3456777777775
No 222
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.04 E-value=4.4e-09 Score=71.53 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=55.4
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCCCc--c----cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--A----LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
.....+|+++.|.|.. +.|.+.+.|++.... . ..........+.|.|.++..+|+|.|+|.+.+.........
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 3567899999999996 468889999984321 1 11223334556799999999999999999985433323445
Q ss_pred EEEEEE
Q psy16652 266 IAVEVE 271 (384)
Q Consensus 266 ~~l~v~ 271 (384)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 555553
No 223
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.04 E-value=1.2e-09 Score=72.00 Aligned_cols=61 Identities=18% Similarity=0.440 Sum_probs=47.2
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccCc----eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTGG----SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.|.|.+.+ .|.+.+.|++++..+..... ... ....|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 479999864 67789999999887753221 111 23579999999999999999999988865
No 224
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.04 E-value=3.1e-09 Score=73.48 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=57.5
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEe--------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
....+.+|+.++|.|.+.+.+.+.+.|++.+..+ ..+.++.... .......|.|.+++.+|+|.|.|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEEE
Confidence 3456789999999999988888899998633221 1123333211 111345799999999999999999
Q ss_pred EEeCCcceEEEEEEEE
Q psy16652 353 AANKYGSAQKEIELFD 368 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v 368 (384)
+.+... .+++..|.|
T Consensus 81 ~~~~~~-~~~~~~~~v 95 (95)
T cd05717 81 LYTMPV-QTAKATVTV 95 (95)
T ss_pred EecCCC-ceEEEEEEC
Confidence 998753 455555554
No 225
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.04 E-value=1.4e-09 Score=68.84 Aligned_cols=63 Identities=38% Similarity=0.683 Sum_probs=50.6
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
+|+++.|.|.+.+.+.+.+.|++++..+............|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 488999999988888889999998876652222233456899999999999999999988643
No 226
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.03 E-value=6.3e-09 Score=71.10 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=58.7
Q ss_pred CCceEEeecCceEEEEEEecccCCC-eEEEEeCCCccccc--CceeE--------eccEEEEcCCCCCC-CeEEEEEEEe
Q psy16652 189 STRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALST--GGSIY--------RGNILKIPNITKTD-RGTYYCVAQN 256 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~d-~G~Y~C~~~~ 256 (384)
+.....+.+|+.+.|.|.+.+.|+| .+.|...+..+... .+... ..+.|.|.++...| .|.|.|.|.|
T Consensus 7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 3566788999999999999887877 67888776655432 12221 23589999998766 7999999999
Q ss_pred CCCCceeeEEEE
Q psy16652 257 GVGRGMKRNIAV 268 (384)
Q Consensus 257 ~~~~~~~~~~~l 268 (384)
..|.. ...+.|
T Consensus 87 ~~G~d-~~~i~L 97 (98)
T cd05898 87 SFGSG-TAIIQL 97 (98)
T ss_pred CCccc-eEEEEe
Confidence 99986 444443
No 227
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.02 E-value=2e-09 Score=72.86 Aligned_cols=71 Identities=24% Similarity=0.472 Sum_probs=55.6
Q ss_pred CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc--ccCce-eE-eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL--STGGS-IY-RGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~-~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.....+.+|+.+.|.|.. .+.|.+.+.|++++.... ...+. .. .++.|.|.+++.+|+|.|+|.|+|....
T Consensus 10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 445668899999999986 778999999999986532 11222 22 3579999999999999999999996544
No 228
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.01 E-value=3.1e-09 Score=71.22 Aligned_cols=75 Identities=20% Similarity=0.418 Sum_probs=50.7
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccC-ccccceEEEeecCCCCCeEEEEEEEeCCcce--EEEEEE
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIERRQFGQYACKAANKYGSA--QKEIEL 366 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l 366 (384)
+.|.|.+.| +|.+.+.|+++|+.+.... ........+. ....+.|.+.....+|.|.|+|.|.|..... +++++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 6888999999999885432 1111111111 1223567888777888999999999986544 444444
No 229
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.01 E-value=5.4e-09 Score=73.11 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=57.0
Q ss_pred cCcEEEEEEeecC---CCccEEEEEeCCCCCCcccceeccCcee------eeCCceEEeeC-CCCceEEEEEeecCCCCC
Q psy16652 87 AQTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLI------IHDSRFQLTTD-PETSTYILSIKEIQETDA 156 (384)
Q Consensus 87 g~~v~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~ 156 (384)
|++|+|.|.+.+. ....+.|++.... ..+.+...+... ...+|+.+..+ ...+..+|.|.+++.+|+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~---~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~ 77 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFS---PAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDE 77 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCc---eeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhC
Confidence 7899999998643 2347999996532 122222221111 12346665432 234678999999999999
Q ss_pred eeEEEEEEEccCcceeeeEEEEE
Q psy16652 157 GIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
|.|+|.+.+..+ .....+.|.|
T Consensus 78 G~Y~C~v~~~~~-~~~~~i~l~v 99 (100)
T cd05713 78 GLYTCFFQSDGF-YEEATVELKV 99 (100)
T ss_pred EEEEEEEecCCc-EEEEEEEEEE
Confidence 999999986443 3566666655
No 230
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.99 E-value=4.3e-09 Score=75.93 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=59.8
Q ss_pred CcceeeeccCcEEEEEEeecCC------CccEEEEEeCCCCCCcccceeccC---ceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPLPISMSG---SLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
|+.+.+.+|++|+|.|...... ...+.|++.........+...... ......+|+.+..+...+.++|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 5566789999999999875322 346999997754321122221111 1122345888766667788999999
Q ss_pred ecCCCCCeeEEEEEEE
Q psy16652 150 EIQETDAGIYKCEVII 165 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~ 165 (384)
+++.+|+|.|.|.+..
T Consensus 86 ~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 86 DAQPEDSGKYFFRVEL 101 (119)
T ss_pred cCChhhCeEEEEEEEc
Confidence 9999999999999864
No 231
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.99 E-value=2.4e-09 Score=68.06 Aligned_cols=63 Identities=29% Similarity=0.423 Sum_probs=43.8
Q ss_pred cCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 87 AQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 87 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
|++++|.|.+ ...+...+.|++++...... ...............|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEG--------------STTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEE--------------EEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCc--------------ceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 56678899999988763211 111111111111224999999999999999986
No 232
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.99 E-value=1.2e-09 Score=69.49 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=45.1
Q ss_pred CCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 288 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|+.++|.|.+ .+.+.+.+.|++++............. ........|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence 6889999999 777788999999987654333222211 00001113999999999999999986
No 233
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.99 E-value=1.2e-09 Score=73.81 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=56.3
Q ss_pred CCcccccCCcEEEEEE-EeccCCCeEEEEECCEE-ecCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCC
Q psy16652 281 PRQGQALQYDAILECH-VEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKY 357 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~ 357 (384)
....+.+|+.+.|.|. ..|+|.|.+.|+.++.. +..+.|.... .++.|.|.+++.+|.| .|.|.|+|..
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEccc
Confidence 3466789999999997 59999999999987654 3334444332 3589999999999999 7999999986
Q ss_pred cc
Q psy16652 358 GS 359 (384)
Q Consensus 358 g~ 359 (384)
..
T Consensus 83 ~~ 84 (95)
T cd05845 83 LR 84 (95)
T ss_pred cc
Confidence 43
No 234
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.99 E-value=9e-09 Score=72.51 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=58.9
Q ss_pred ccCcEEEEEEeecCC------------CccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeC-CCCceEEEEEe
Q psy16652 86 IAQTADLKCSVQYAD------------DYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTD-PETSTYILSIK 149 (384)
Q Consensus 86 ~g~~v~l~C~~~~~~------------~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~L~i~ 149 (384)
.|++|+|.|.+.... ...+.|++...... ..+.....+... ...+|+.+... ...+..+|+|.
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~-~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~ 79 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKE-SVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEIT 79 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCc-cEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEe
Confidence 489999999986532 35899999753221 122222222111 22346666542 24467899999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+++.+|+|.|+|.+.. .....+..+.|.|.
T Consensus 80 nl~~sDsG~Y~C~V~~-g~~~~~~~v~l~v~ 109 (112)
T cd05900 80 ELRSNDSGTYRCEVMH-GIEDNYDTVEVQVK 109 (112)
T ss_pred ecccccCEEEEEEEec-CCCCceeEEEEEEE
Confidence 9999999999999973 22445555666554
No 235
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.99 E-value=2.3e-09 Score=72.67 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=52.9
Q ss_pred ccccCCcEEEEEEE-ec----cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 284 GQALQYDAILECHV-EA----YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 284 ~~~~g~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.+.+|....|.|.- .+ .+.+++.|++|+.++.......... ...+.|.|.+++.+|+|.|+|.|.+..|
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~------~~~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSL------KGSTYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEec------CCCCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 35677889999973 33 4667999999999886544221110 0245699999999999999999999976
Q ss_pred ceE
Q psy16652 359 SAQ 361 (384)
Q Consensus 359 ~~~ 361 (384)
...
T Consensus 80 g~~ 82 (95)
T cd05897 80 GKK 82 (95)
T ss_pred CEE
Confidence 553
No 236
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.99 E-value=7.9e-09 Score=73.14 Aligned_cols=93 Identities=20% Similarity=0.365 Sum_probs=60.6
Q ss_pred cCcEEEEEEeecCC----------CccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeC-CCCceEEEEEeecC
Q psy16652 87 AQTADLKCSVQYAD----------DYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTD-PETSTYILSIKEIQ 152 (384)
Q Consensus 87 g~~v~l~C~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~L~i~~~~ 152 (384)
|++|+|+|.+...+ ...+.|++...... ..+.....+... ...+|+.+..+ ...+..+|.|.+++
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~-~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKE-VTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCc-EEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 89999999996543 36799999743321 222222222211 12346666432 24567889999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRR 181 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 181 (384)
.+|+|.|.|.+... .......+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~-~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHG-IEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeC-CCcceEEEEEEEEE
Confidence 99999999999753 34566777777653
No 237
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.99 E-value=6e-09 Score=72.24 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=60.6
Q ss_pred cCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceecc-Ccee---eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 87 AQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMS-GSLI---IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 87 g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
|++|+|.|...... ...|.|++..... ...+..... .+.. ...+|+.+. .......+|.|.+++.+|+|.|+|
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSS-PENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCC-ceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceeeeEEEEE
Confidence 78999999875433 3479999864331 122222211 1111 122344443 334567889999999999999999
Q ss_pred EEEEccCcceeeeEEEEEe
Q psy16652 162 EVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~l~v~ 180 (384)
.+.....+..+..+.|.|.
T Consensus 79 ~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EEEeCCCCCeeeEEEEEEC
Confidence 9987777888888888773
No 238
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.99 E-value=5.7e-09 Score=72.78 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=58.5
Q ss_pred CcEEEEEEeecCC---CccEEEEEeCCCCCCcccceecc--Cce--eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 88 QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMS--GSL--IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 88 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
++|+|.|.+.... ...|.|+|..... ...+.+... +.. .....|..+... ..+..+|.|.+++.+|+|.|+
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~-~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGS-KQNIAVFHPQYGISIPPSYEGRVSFLNS-SLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCC-CEEEEEEecCCCcccCcCcCceEEEeCC-CCCceEEEEccCCcccCEEEE
Confidence 5799999987643 4579999987542 121111111 111 112344444432 226779999999999999999
Q ss_pred EEEEEccCcceeeeEEEEE
Q psy16652 161 CEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 161 C~~~~~~~~~~~~~~~l~v 179 (384)
|.+.....+.....+.|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 9998666677777777766
No 239
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.97 E-value=1.5e-08 Score=69.71 Aligned_cols=90 Identities=19% Similarity=0.288 Sum_probs=61.3
Q ss_pred cEEEEEEeecC-C---CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 89 TADLKCSVQYA-D---DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 89 ~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
.|+|.|.+... + ..+|.|.+..... ...+.+...... ....+|..+. +...+..+|.|.+++.+|+|.|+
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~-~~~va~y~~~~g~~~~~~f~~Rv~f~-~~~~~daSi~i~nl~~~D~G~Y~ 79 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGS-KQNVAIYNPSMGVSVLPPYRERVTFK-NPSFEDGTISLSRLELEDEGVYI 79 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCC-ceEEEEECCcCCcccCccccCcEEEc-CCCCCcceEEEcCCccccCEEEE
Confidence 68999999742 2 2369999864322 222333322111 1244677766 33456788999999999999999
Q ss_pred EEEEEccCcceeeeEEEEEe
Q psy16652 161 CEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 161 C~~~~~~~~~~~~~~~l~v~ 180 (384)
|.+.+...+..+..+.|.|.
T Consensus 80 C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 80 CEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEEEeCCCCCeEEEEEEEEC
Confidence 99998667778888888773
No 240
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.97 E-value=4.4e-09 Score=70.35 Aligned_cols=72 Identities=38% Similarity=0.664 Sum_probs=56.1
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
..+.+|+.+.|.|.+.+.|...+.|++++..+... ...+.+..+..+|+|.|+|.+.+..+...+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 45789999999999998888899999987555422 2227788999999999999999966554556666554
No 241
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.97 E-value=1.2e-08 Score=69.39 Aligned_cols=90 Identities=16% Similarity=0.268 Sum_probs=62.1
Q ss_pred CcEEEEEEeecC-CCccEEEEEeCCCCCCcccceecc--Cce--eeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 88 QTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMS--GSL--IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 88 ~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
++|+|+|..... ...+|.|.|...... ..+..... +.. ....+|..+. .......+|.|.+++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~-~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~ 78 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGS-VTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICK 78 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCc-EEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEE
Confidence 478999998653 456899998654321 11211111 111 1234566665 3355678999999999999999999
Q ss_pred EEEccCcceeeeEEEEE
Q psy16652 163 VIISLNNKVSAEVELIV 179 (384)
Q Consensus 163 ~~~~~~~~~~~~~~l~v 179 (384)
+.+...|..+..+.|.|
T Consensus 79 v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 79 AVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEeCCCCCeeEEEEEEE
Confidence 99888888888888876
No 242
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.96 E-value=1.1e-08 Score=72.49 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=59.9
Q ss_pred ccCcEEEEEEeecCC------CccEEEEEeCCCCCCccc-ceeccCce---eeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652 86 IAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPL-PISMSGSL---IIHDSRFQLTTDPETSTYILSIKEIQETD 155 (384)
Q Consensus 86 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 155 (384)
.|++|+|.|.+...+ ...|.|++.......... .+...... ....+|+.+... ..+..+|.|.+++.+|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence 489999999986542 457999998643222212 22211111 112356666432 3456789999999999
Q ss_pred CeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 156 AGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 156 ~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+|.|+|.+.+. .+.....+.|.|.
T Consensus 80 sG~Y~C~v~~~-~~~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDG-LEDESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEec-ccceEEEEEEEEE
Confidence 99999999743 4456677777664
No 243
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.95 E-value=7.7e-09 Score=68.45 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=57.1
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
...+..|+++.|.|...+. .+.+.|+++|..+..+.++... ..-|.|..++.+|+|.|.|.+. +.|-..
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~ 73 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE-EEGFQQ 73 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe-cCCCeE
Confidence 3457889999999999884 7799999999998766554432 3448899999999999999987 445444
Q ss_pred EEEEEE
Q psy16652 362 KEIELF 367 (384)
Q Consensus 362 ~~~~l~ 367 (384)
....+.
T Consensus 74 ~~~~y~ 79 (85)
T cd05872 74 LVASYS 79 (85)
T ss_pred EEEEEE
Confidence 443333
No 244
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.93 E-value=1.6e-08 Score=71.47 Aligned_cols=82 Identities=20% Similarity=0.419 Sum_probs=55.1
Q ss_pred eeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCc---ccceeccCcee-----eeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 83 IKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKME---PLPISMSGSLI-----IHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+.+|++|+|.|..... ....+.||+......+. .+......... ...+++.+..........|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 47899999999998653 34579999987652211 11111111111 12357766554456678899999999
Q ss_pred CCCeeEEEEEE
Q psy16652 154 TDAGIYKCEVI 164 (384)
Q Consensus 154 ~d~G~Y~C~~~ 164 (384)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999875
No 245
>PHA03376 BARF1; Provisional
Probab=98.93 E-value=8e-08 Score=71.46 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=75.1
Q ss_pred eEEeecCceEEEEEEecc---cCCCeEEEEeCCC----cccccC------------ce-e----EeccEEEEcCCCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANG---FPAPTISWRRDNS----AALSTG------------GS-I----YRGNILKIPNITKTDR 247 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~----~~~~~~------------~~-~----~~~~~l~i~~~~~~d~ 247 (384)
.+....|+.+.|+|..+. .+...|.|+|.+. ...... +. . ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 455678999999998652 2344799999532 111000 00 0 0233799999999999
Q ss_pred eEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG 311 (384)
Q Consensus 248 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 311 (384)
|+|+|.+....... .+.-.|.+..+-.+++.......+..+...+.|.+-|+|.|.++|..+.
T Consensus 100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~ 162 (221)
T PHA03376 100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPE 162 (221)
T ss_pred ceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecccc
Confidence 99999999755333 2223333333333333332223333567789999888999999998764
No 246
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.92 E-value=2.1e-08 Score=70.95 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=59.1
Q ss_pred cCCcEEEEEEEeccC------CCeEEEEECC-----E-Ee--cCCCc------eeeeeeeccCccccceEEEeecCCCCC
Q psy16652 287 LQYDAILECHVEAYP------PPAIVWIKDG-----V-QI--MNNQH------YSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p------~~~v~W~~~~-----~-~~--~~~~~------~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
.|+.++|.|.....+ ...+.|++.. . .+ ..+.. +..............+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999987653 4489999862 1 11 11111 111111111123568899999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
|.|.|.+.+..+..+..+.|.|.+.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~~ 105 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRGV 105 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEEE
Confidence 9999999999888899999999864
No 247
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.90 E-value=3.5e-08 Score=66.79 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=57.6
Q ss_pred ceeeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+..|+++.|.|.+.+.+...+.|+++ +... ....++..... .....|.|.+++..|+|.|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v--------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y 66 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL--------------AESGRFSVSRS--GSNSTLTISNVTPEDSGTY 66 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc--------------CCCCcEEEEEc--CCeeEEEEEeeccccCeEE
Confidence 45578999999999998877889999997 3221 12344444442 2256899999999999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy16652 160 KCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v 179 (384)
+|.+.+..+. ....+.|.|
T Consensus 67 ~C~v~~~~~~-~~~~~~l~V 85 (86)
T smart00410 67 TCAATNSSGS-ASSTTTLTV 85 (86)
T ss_pred EEEEEcCCCe-EEEEEEEEE
Confidence 9999844433 333355554
No 248
>smart00409 IG Immunoglobulin.
Probab=98.90 E-value=3.5e-08 Score=66.79 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=57.6
Q ss_pred ceeeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+..|+++.|.|.+.+.+...+.|+++ +... ....++..... .....|.|.+++..|+|.|
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v--------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y 66 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLL--------------AESGRFSVSRS--GSNSTLTISNVTPEDSGTY 66 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEc--------------CCCCcEEEEEc--CCeeEEEEEeeccccCeEE
Confidence 45578999999999998877889999997 3221 12344444442 2256899999999999999
Q ss_pred EEEEEEccCcceeeeEEEEE
Q psy16652 160 KCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v 179 (384)
+|.+.+..+. ....+.|.|
T Consensus 67 ~C~v~~~~~~-~~~~~~l~V 85 (86)
T smart00409 67 TCAATNSSGS-ASSTTTLTV 85 (86)
T ss_pred EEEEEcCCCe-EEEEEEEEE
Confidence 9999844433 333355554
No 249
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.90 E-value=8.8e-09 Score=69.62 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=57.0
Q ss_pred CCCceEEeecCceEEEEEE-ecccCCCeEEEEeCCCcccccCcee--EeccEEEEcCCCCCCCe-EEEEEEEeCCC
Q psy16652 188 NSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI--YRGNILKIPNITKTDRG-TYYCVAQNGVG 259 (384)
Q Consensus 188 ~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~ 259 (384)
.....+.+.+|+.+.|.|. ..|+|.|.+.|+.++........+. ..++.|.|.++..+|+| .|.|.|.+...
T Consensus 8 ~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 8 EKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 3456678999999999997 5899999999998765544333332 23579999999999999 79999998653
No 250
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.89 E-value=1.6e-08 Score=68.73 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=59.0
Q ss_pred cccccCCcEEEEEEEe------cc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 283 QGQALQYDAILECHVE------AY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~------~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
..+.+|+.+.|.|... ++ ....+.|++++..+....+..+.. .........|.|.++..+|+|.|+|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~--~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDG--VRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccc--eeEEEeCCEEEEEeCChhhCeEEEE
Confidence 4567899999999961 11 233799999975554433211100 0011246789999999999999999
Q ss_pred EEEeCCcceEEEEEEEE
Q psy16652 352 KAANKYGSAQKEIELFD 368 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v 368 (384)
.+.|.....+.++.|.|
T Consensus 88 ~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 88 VLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EECCCCcceEEEEEEEC
Confidence 99999888888877764
No 251
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.88 E-value=3.5e-08 Score=73.84 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=67.8
Q ss_pred ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeee--CCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652 81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIH--DSRFQLTTDPETSTYILSIKEIQETDAG 157 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G 157 (384)
.+.|.+|++|+|.|... +....++.|+|..+. ...+...+..... .+|+.+.. .......|.|.+++.+|+|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~----IatY~~~g~~i~~~Fk~Rve~mS-~s~~~StItIknVt~sDeG 98 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKT----IAGYGPCGPVIVDKFKNKIEYLS-KSFNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCC----EEEEecCCcEEChhhcCeEEEec-cCCCcceEEEEeCChhhCe
Confidence 35579999999999985 455778999996531 1222222222221 23555322 2445678999999999999
Q ss_pred eEEEEEEEccCc-ceeeeEEEEEecCC
Q psy16652 158 IYKCEVIISLNN-KVSAEVELIVRRPP 183 (384)
Q Consensus 158 ~Y~C~~~~~~~~-~~~~~~~l~v~~~~ 183 (384)
.|+|.+..-..+ ..+....|.|..+.
T Consensus 99 cY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 99 CYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEEEEEecCCCCCceeEEEEEEEchh
Confidence 999999765555 78888899988654
No 252
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.88 E-value=3.5e-08 Score=70.78 Aligned_cols=86 Identities=23% Similarity=0.357 Sum_probs=59.3
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
|....+.+|++|+|.|...... ...+.||+......+..+..... ... ....+|+....+.......|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 5566789999999999876432 45799999876544333322211 111 1123677777654456678999999
Q ss_pred CCCCCeeEEEEEE
Q psy16652 152 QETDAGIYKCEVI 164 (384)
Q Consensus 152 ~~~d~G~Y~C~~~ 164 (384)
+.+|+|.|.|.+.
T Consensus 84 ~~~Dsa~YyCa~~ 96 (117)
T cd04981 84 TPEDTAVYYCARG 96 (117)
T ss_pred CHHHCEEEEEEEE
Confidence 9999999999875
No 253
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.87 E-value=2.5e-08 Score=67.76 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=52.3
Q ss_pred ceEEeecCceEEEEEEe-c-----c-----cCCCeEEEEeCCCcccccC-------ceeEeccEEEEcCCCCCCCeEEEE
Q psy16652 191 RSVIVSEGQTVYLYCYA-N-----G-----FPAPTISWRRDNSAALSTG-------GSIYRGNILKIPNITKTDRGTYYC 252 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~-~-----~-----~~~~~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C 252 (384)
....+.+|+++.|.|.. . + .....+.|+|++....... +....+..|.|.++..+|+|.|+|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 34568899999999986 1 1 1234799999974443322 344567899999999999999999
Q ss_pred EEEeCCCC
Q psy16652 253 VAQNGVGR 260 (384)
Q Consensus 253 ~~~~~~~~ 260 (384)
.+.|....
T Consensus 88 ~~rN~t~C 95 (104)
T cd05896 88 VLRNSTYC 95 (104)
T ss_pred EECCCCcc
Confidence 99987644
No 254
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.87 E-value=5.7e-09 Score=68.77 Aligned_cols=74 Identities=28% Similarity=0.527 Sum_probs=48.7
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccC-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
+|.+...+.......+. +.|.|.+.+.+ .+.+.|+ +....... .........+.|.|..+..+|.|.|+|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~-------~~~~~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNS-------NSRGSSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEE-------EEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceee-------eeeeccceeeEEEEccCCHHhCcEEEE
Confidence 35555555444333333 99999999877 7799999 11111111 111111246789999999999999999
Q ss_pred EEEe
Q psy16652 352 KAAN 355 (384)
Q Consensus 352 ~a~n 355 (384)
.|+|
T Consensus 72 ~a~N 75 (75)
T PF13927_consen 72 IASN 75 (75)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9987
No 255
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.87 E-value=5.5e-08 Score=65.94 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=62.9
Q ss_pred CceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCc--eeE-------eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGG--SIY-------RGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.....+.+|+.+.|.|.+..+|+|+ +.|.+++..+..... ... ..+.|.+.++..+++|.|+|.|.|...
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 4556799999999999999999997 999998765433222 111 235899999999999999999999877
Q ss_pred CceeeEEEEEEE
Q psy16652 260 RGMKRNIAVEVE 271 (384)
Q Consensus 260 ~~~~~~~~l~v~ 271 (384)
.. +.++.|.|+
T Consensus 90 ~~-s~tF~l~v~ 100 (101)
T cd05860 90 SA-SVTFNVYVN 100 (101)
T ss_pred eE-EEEEEEEEe
Confidence 65 666666653
No 256
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.87 E-value=4.8e-08 Score=66.57 Aligned_cols=89 Identities=20% Similarity=0.347 Sum_probs=58.7
Q ss_pred CcEEEEEEeecC-CCccEEEEEeCCCCCCcccceecc--Ccee--eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 88 QTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMS--GSLI--IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 88 ~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
++++|.|..... ...+|+|.|...... +.+..... +... ...+|..+... .....+|.|.+++.+|+|.|+|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~-~~iavy~~~~g~~~~~~y~~Rv~f~~~-~~~d~sI~i~nvt~~D~G~Y~C~ 78 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHK-ENIAVYHPIYGMHIEDKYRGRVYFLNS-TREDMSLSFNNATEEDVGLYCCS 78 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCC-ceEEEEECCCCCEECccccCeEEEecC-CCCccEEEEcCCCcccCEEEEEE
Confidence 478999998643 466899999764321 12222211 2111 12356665543 23567899999999999999999
Q ss_pred EEEccCcceeeeEEEE
Q psy16652 163 VIISLNNKVSAEVELI 178 (384)
Q Consensus 163 ~~~~~~~~~~~~~~l~ 178 (384)
+.+...+..++.+.|.
T Consensus 79 ~~t~P~g~~~~~i~~~ 94 (96)
T cd05889 79 LVTYPQGSWEKVIEVV 94 (96)
T ss_pred EEeCCCCCeEEEEEEE
Confidence 9877777777776653
No 257
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.87 E-value=1.3e-08 Score=68.99 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=51.6
Q ss_pred EEeecCceEEEEEEe-cc----cCCCeEEEEeCCCcccccCceeE---eccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 193 VIVSEGQTVYLYCYA-NG----FPAPTISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~-~~----~~~~~v~W~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
..+.+|.+..|.|.- .+ .+.+.+.|+|++..+........ ....|.|.++..+|+|.|+|++.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 346789999999973 33 35568999999987654432221 2458999999999999999999997544
No 258
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.85 E-value=4.8e-08 Score=66.37 Aligned_cols=72 Identities=14% Similarity=0.279 Sum_probs=53.2
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEe--------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
.+..+.+|++++|.|.+.+.....+.|++.+..+ ..++|+...... ....+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~----~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFS----SNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCC----CCEEEEEECcCCcccCEEEEEE
Confidence 4567889999999999988766778888765332 244555544211 1345699999999999999999
Q ss_pred EEeC
Q psy16652 353 AANK 356 (384)
Q Consensus 353 a~n~ 356 (384)
+...
T Consensus 81 v~t~ 84 (95)
T cd05881 81 LYTD 84 (95)
T ss_pred EEcc
Confidence 9753
No 259
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.85 E-value=2.5e-08 Score=68.09 Aligned_cols=87 Identities=14% Similarity=0.238 Sum_probs=57.5
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.+...+ ..+|.+|++|+|.|... .+...+.|++++...... ..........+.|.++
T Consensus 2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------~~~~~~~~~~f~i~~v 60 (91)
T cd05751 2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------KPPEPQNKAKFFIPSM 60 (91)
T ss_pred CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------ccCCCceeEEEEccCC
Confidence 45666655 35788999999999875 456678899877541100 0011233457999999
Q ss_pred CCCCCeeEEEEEEEccC--cceeeeEEEEE
Q psy16652 152 QETDAGIYKCEVIISLN--NKVSAEVELIV 179 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v 179 (384)
+.+|+|.|+|++.+... ...+..++|.|
T Consensus 61 ~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 61 KREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 99999999999975421 12344455554
No 260
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.85 E-value=5.8e-08 Score=68.11 Aligned_cols=93 Identities=22% Similarity=0.395 Sum_probs=60.5
Q ss_pred cCcEEEEEEeecCC-------CccEEEEEeCC--CCCCcccceeccCce---eeeCCceEEeeCC-CCceEEEEEeecCC
Q psy16652 87 AQTADLKCSVQYAD-------DYPVIWMKMDT--AKKMEPLPISMSGSL---IIHDSRFQLTTDP-ETSTYILSIKEIQE 153 (384)
Q Consensus 87 g~~v~l~C~~~~~~-------~~~v~W~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~L~i~~~~~ 153 (384)
|++|+|+|.+...| .+.|.|.+... ......+....++.. ....+|..+..+. ..+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999976322 46899999742 111112222222221 1244566666532 35678999999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+|+|.|+|.+.. .....+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~-g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVL-GINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEE-CCcccEEEEEEEEE
Confidence 999999999975 33456667777765
No 261
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.84 E-value=3e-08 Score=64.63 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=47.8
Q ss_pred EEEEEEe-cccCCCeEEEEeCCCcccccCc------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 201 VYLYCYA-NGFPAPTISWRRDNSAALSTGG------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 201 ~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
++|+|.. .+.|++.++||+++..+..... .....++|.+...+.+|++.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 6899998 5588899999999987754321 12234579999999999999999999977654
No 262
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.84 E-value=2.7e-08 Score=67.01 Aligned_cols=73 Identities=25% Similarity=0.338 Sum_probs=51.1
Q ss_pred CceEEEEEEecccC--CCeEEEEeCCCcccccC--c--------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 198 GQTVYLYCYANGFP--APTISWRRDNSAALSTG--G--------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 198 g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~--~--------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
|+++.|.|.+.+.+ ...+.|...++...... . .....+.|.|.+++.+|+|.|+|.+.|..+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 78999999997644 44789988775331110 0 01234689999999999999999999976654 444
Q ss_pred EEEEEE
Q psy16652 266 IAVEVE 271 (384)
Q Consensus 266 ~~l~v~ 271 (384)
..|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 555543
No 263
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.83 E-value=3.1e-08 Score=69.48 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=55.1
Q ss_pred eeeccCcEEEEEEeecCCCccEEEEEeCCC--CCCcccceeccC-cee-----eeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 83 IKDIAQTADLKCSVQYADDYPVIWMKMDTA--KKMEPLPISMSG-SLI-----IHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
.+.+|++|+|.|.........+.|++.... .....+...... ... ....|+.... ......|.|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSR--SSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEe--cCCEEEEEECCCCHH
Confidence 368999999999986555567999998865 333333322221 111 1235666644 447788999999999
Q ss_pred CCeeEEEEEE
Q psy16652 155 DAGIYKCEVI 164 (384)
Q Consensus 155 d~G~Y~C~~~ 164 (384)
|+|.|.|.+.
T Consensus 80 DsgtY~Ca~~ 89 (104)
T cd05720 80 NEGYYFCSVA 89 (104)
T ss_pred HCEEEEEEEc
Confidence 9999999875
No 264
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.83 E-value=6.6e-08 Score=68.38 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=57.6
Q ss_pred cCCcEEEEEEEeccC------CCeEEEEECCEE-------e-cCC----------CceeeeeeeccCccccceEEEeecC
Q psy16652 287 LQYDAILECHVEAYP------PPAIVWIKDGVQ-------I-MNN----------QHYSVSHFATSDEFSDTSLRVITIE 342 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p------~~~v~W~~~~~~-------~-~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~ 342 (384)
.|+.++|.|.....| ...+.|++.... + ... .++.+. .......+|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence 378999999987653 346999985411 0 100 111110 111235679999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 343 RRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
.+|+|.|.|.+.+..+..+..+.|.|.+.
T Consensus 77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~~ 105 (106)
T cd05877 77 LEDYGRYRCEVIDGLEDESVVVALRLRGV 105 (106)
T ss_pred hHHCEEEEEEEEecccceEEEEEEEEEEE
Confidence 99999999999999999999999999874
No 265
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.82 E-value=4.9e-08 Score=67.91 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred ecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEec--------CCCceee-e--eeeccCccccceEEEeecCCCCC
Q psy16652 278 INRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSV-S--HFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 278 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~-~--~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
+.+.+..+.+|+.+.|.|.........+.|++...... ....... . ...+..-..+++|.|.+++.+|+
T Consensus 3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~ 82 (105)
T cd05774 3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDT 82 (105)
T ss_pred EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccC
Confidence 34455667899999999976543444899999632110 0000000 0 00111112467899999999999
Q ss_pred eEEEEEEEeCC-cceEEEEEEEE
Q psy16652 347 GQYACKAANKY-GSAQKEIELFD 368 (384)
Q Consensus 347 G~Y~C~a~n~~-g~~~~~~~l~v 368 (384)
|.|+|.+.+.. ...+..+.|.|
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEEEC
Confidence 99999999987 56666677654
No 266
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.81 E-value=1.3e-07 Score=66.63 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=58.0
Q ss_pred cCCcEEEEEEEeccC------------CCeEEEEECC--EE---e-cCCC----------ceeeeeeeccCccccceEEE
Q psy16652 287 LQYDAILECHVEAYP------------PPAIVWIKDG--VQ---I-MNNQ----------HYSVSHFATSDEFSDTSLRV 338 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p------------~~~v~W~~~~--~~---~-~~~~----------~~~~~~~~~~~~~~~~~l~i 338 (384)
.|++++|.|...... .+.|.|++-. .. + .... |+.+. .......+.+|+|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~--~~~~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLP--NYPAIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEec--ccCCCCCCcEEEE
Confidence 478999999986532 3589999842 11 1 0111 11111 1011235788999
Q ss_pred eecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 339 ITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 339 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
.+++.+|+|.|.|.+.+........+.|.|++.
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~gv 111 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKGI 111 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEEee
Confidence 999999999999999999889999999999875
No 267
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.81 E-value=2.8e-08 Score=67.88 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=54.7
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+ ...+..|+.++|.|... .+...+.|+++|....... .. .......+.|.+++.+|+|.|+|.
T Consensus 2 kP~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~~-------~~~~~~~f~i~~v~~~~~G~Y~C~ 71 (91)
T cd05751 2 KPSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-PP-------EPQNKAKFFIPSMKREHAGRYRCY 71 (91)
T ss_pred CCEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-cC-------CCceeEEEEccCCChhHCEEEEEE
Confidence 45566544 34678999999999886 5677899999987543211 00 112356799999999999999999
Q ss_pred EEeC
Q psy16652 353 AANK 356 (384)
Q Consensus 353 a~n~ 356 (384)
+.|.
T Consensus 72 ~~~~ 75 (91)
T cd05751 72 YRSG 75 (91)
T ss_pred EECC
Confidence 9986
No 268
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.80 E-value=5e-08 Score=64.59 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=54.7
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
....+..|+++.|.|...+. .+.+.|++++..+............|.|..++.+|+|.|.|.+.-.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence 34678899999999998774 5699999999988765555556677999999999999999998743
No 269
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.79 E-value=2.4e-07 Score=65.05 Aligned_cols=93 Identities=22% Similarity=0.406 Sum_probs=60.0
Q ss_pred cCcEEEEEEeecCC-----------CccEEEEEeC-----CCCCCcccceeccCcee---eeCCceEEeeCC-CCceEEE
Q psy16652 87 AQTADLKCSVQYAD-----------DYPVIWMKMD-----TAKKMEPLPISMSGSLI---IHDSRFQLTTDP-ETSTYIL 146 (384)
Q Consensus 87 g~~v~l~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~L 146 (384)
|++++|.|.+...| ...|.|.+-. +......+.+..++... ...+|..+..+. ..+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78999999997432 3479999862 11112333333333222 233466665432 4567899
Q ss_pred EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
.|.+++.+|+|.|+|.+... ....+..+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g-~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHG-IEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEEC-CcccEEEEEEEEE
Confidence 99999999999999999743 3456667777664
No 270
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.76 E-value=4.8e-06 Score=71.27 Aligned_cols=211 Identities=16% Similarity=0.233 Sum_probs=123.5
Q ss_pred CceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec
Q psy16652 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN 208 (384)
Q Consensus 131 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 208 (384)
.+|.+-.....+...|.|.+++..++|.|+.++.+...+ .....+.|.+..+|.+..... -+.+|+...-.|.+.
T Consensus 276 ~~yi~p~~a~p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~---PVL~Ge~YkAtC~vA 352 (566)
T PHA03269 276 EKYIIPDRKTTSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD---PVLLGNPYAAYCKVN 352 (566)
T ss_pred ceEEeccCCCCCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC---ccccCCCceEEEEee
Confidence 455555444556678999999999999999887643322 345667788888886664433 367899999999996
Q ss_pred c-cCCC--eEEEEeCCCcccccC----------ceeEeccEEEEcCCCCCC--CeEEEEEEEeCCCCce----eeEEEEE
Q psy16652 209 G-FPAP--TISWRRDNSAALSTG----------GSIYRGNILKIPNITKTD--RGTYYCVAQNGVGRGM----KRNIAVE 269 (384)
Q Consensus 209 ~-~~~~--~v~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d--~G~Y~C~~~~~~~~~~----~~~~~l~ 269 (384)
. +|.. .+.|++++..+.... +.+...++|++......| --..+|.+........ +....-.
T Consensus 353 ~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~ 432 (566)
T PHA03269 353 KYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPD 432 (566)
T ss_pred eecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCc
Confidence 6 4433 699999987776311 112223455543322112 3457999997543321 2334445
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEee---cCCC
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT---IERR 344 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---~~~~ 344 (384)
|..+|.+++. .+++ ...|.+.--|. ..+.|..++............. ....-+-..|.. ++..
T Consensus 433 VY~~PtISm~------FedG--~AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~----C~ehPGLVNLRS~~pLS~~ 500 (566)
T PHA03269 433 VYPFPNVSIE------IIDG--HIVCLAKCVPRGVVHFNWWINDIPIEHENSEILGV----CDNNKRFVNLQSSCDTSEL 500 (566)
T ss_pred cccCCeEEEE------EeCC--EEEEecccccCCCceEEEEecCCCCCCccceeecc----CCCCCCceeeccccccccc
Confidence 5556665542 1222 34588776655 3899998876643332211111 111122233444 3344
Q ss_pred C-CeEEEEEEEeC
Q psy16652 345 Q-FGQYACKAANK 356 (384)
Q Consensus 345 d-~G~Y~C~a~n~ 356 (384)
| .-+|+|.+...
T Consensus 501 dgpveYTCrL~GY 513 (566)
T PHA03269 501 DGPITYSCHLDGY 513 (566)
T ss_pred CCceeEEEEEeec
Confidence 3 24799998764
No 271
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.75 E-value=9.5e-08 Score=65.52 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=49.7
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.+.. +...+|.+|++|+|.|.... ....+.|+|.+....... . . ..........+.|.+++
T Consensus 2 P~l~a-~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~--~---------~-----~~~~~~~~a~f~I~~~~ 63 (94)
T cd05711 2 PFLSA-HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH--L---------Y-----EKHHGGFQASFPLGPVT 63 (94)
T ss_pred CEEEe-cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee--c---------c-----cccCCeEEEEEEecCCC
Confidence 44544 34566789999999998754 455799999876521100 0 0 00002223468999999
Q ss_pred CCCCeeEEEEEEE
Q psy16652 153 ETDAGIYKCEVII 165 (384)
Q Consensus 153 ~~d~G~Y~C~~~~ 165 (384)
.+|+|.|+|....
T Consensus 64 ~~~~G~Y~C~~~~ 76 (94)
T cd05711 64 PAHAGTYRCYGSY 76 (94)
T ss_pred cccCEEEEEEEEC
Confidence 9999999999763
No 272
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.75 E-value=2.3e-07 Score=65.72 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=57.6
Q ss_pred cCCcEEEEEEEeccC----------CCeEEEEECC--EEe----cCCC----------ceeeeeeeccCccccceEEEee
Q psy16652 287 LQYDAILECHVEAYP----------PPAIVWIKDG--VQI----MNNQ----------HYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p----------~~~v~W~~~~--~~~----~~~~----------~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
.|+.++|.|.....+ ...+.|++.. ... ..+. |+.+. .........+|+|.+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~--~~~~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLP--NYPENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEec--cCCCCCCcEEEEECC
Confidence 478999999997643 2469999852 111 0011 11110 001122457799999
Q ss_pred cCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 341 IERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
++.+|+|.|.|.+.......++.+.|.|.+.
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g~ 109 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTGV 109 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEEE
Confidence 9999999999999998889999999999874
No 273
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.72 E-value=4.8e-08 Score=67.63 Aligned_cols=74 Identities=16% Similarity=0.309 Sum_probs=53.2
Q ss_pred ccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 286 ALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
..|+.+.|.|.+.|+ |. +.+.|+++|..+..... ........+.....+.|.+......|.|.|+|.|.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999997 53 58999999999875543 2222223333333455667766677999999999998764
No 274
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.71 E-value=2.1e-07 Score=65.04 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=52.2
Q ss_pred CCcEEEEEEEeccCC---CeEEEEECCE--Ee---cCC------------CceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652 288 QYDAILECHVEAYPP---PAIVWIKDGV--QI---MNN------------QHYSVSHFATSDEFSDTSLRVITIERRQFG 347 (384)
Q Consensus 288 g~~~~l~C~~~~~p~---~~v~W~~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 347 (384)
|++++|.|....... ..+.|++... .+ ... .|..+. .........+|+|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELL--KDAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEee--cccccCCcEEEEEEcCChhhCE
Confidence 678999999863222 2588887541 11 000 111110 0111123568999999999999
Q ss_pred EEEEEEEeCCcceEEEEEEEE
Q psy16652 348 QYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 348 ~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.|.|.+.|..+..++.+.|.|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999999888888888887
No 275
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.68 E-value=3.5e-05 Score=65.30 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=100.8
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEe
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRR 219 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~ 219 (384)
..|.|..++...+|.|+....+.... .....+.|..+.+|.+...... +.+|+...-.|.+.. +|.. .+.|++
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P---vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA---VLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc---cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 35999999999999999998654433 3345577788888887654333 678999999999966 4443 699999
Q ss_pred CCCcccccCcee----------EeccEEEEcCCCC-CCCeEEEEEEEeCCCCc----eeeEEEEEEEecCeEEecCCCcc
Q psy16652 220 DNSAALSTGGSI----------YRGNILKIPNITK-TDRGTYYCVAQNGVGRG----MKRNIAVEVEFAPVITINRPRQG 284 (384)
Q Consensus 220 ~~~~~~~~~~~~----------~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~~~~~~~~~ 284 (384)
++..+....... ...++|++..... ...-..+|.+....... .+....-.|..+|.+.+.
T Consensus 259 ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~----- 333 (466)
T PHA03270 259 GGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME----- 333 (466)
T ss_pred CCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----
Confidence 998775322111 1223444433221 12236899999744332 233344455556665542
Q ss_pred cccCCcEEEEEEEeccCC-CeEEEEECCEEecCC
Q psy16652 285 QALQYDAILECHVEAYPP-PAIVWIKDGVQIMNN 317 (384)
Q Consensus 285 ~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~ 317 (384)
.+++ ...|.+.--|. ..+.|..++......
T Consensus 334 -F~dG--~AVCtA~CVPegV~l~W~V~D~~~pa~ 364 (466)
T PHA03270 334 -FGGD--EAVCTAACVPEGVTLAWLLGADPAPAE 364 (466)
T ss_pred -EeCC--EEEEeccccCCCCEEEEEecCCCCCCc
Confidence 2222 23577655443 389999887666444
No 276
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.68 E-value=2.3e-07 Score=64.57 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=52.7
Q ss_pred CcEEEEEEEeccC---CCeEEEEECCEE----e---cC------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 289 YDAILECHVEAYP---PPAIVWIKDGVQ----I---MN------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 289 ~~~~l~C~~~~~p---~~~v~W~~~~~~----~---~~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+.++|.|.....+ ...+.|++.... + .. ...+.....-........+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999997654 337999986431 0 00 000100100011111467899999999999999999
Q ss_pred EEe-CCcceEEEEEEEE
Q psy16652 353 AAN-KYGSAQKEIELFD 368 (384)
Q Consensus 353 a~n-~~g~~~~~~~l~v 368 (384)
+.+ ..|+.++.+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 975 7889999998887
No 277
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.67 E-value=1.9e-07 Score=62.33 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=45.4
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.|.|.+.+ +|.+.+.|+++|.++.... ........+.....+.|.+.....++.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 679999976 5888999999999986433 11111111111223445665555666789999999987653
No 278
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.64 E-value=4.8e-07 Score=59.20 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=49.3
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-eEEEEEEEE
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-AQKEIELFD 368 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 368 (384)
+.|.|.+.| .|.+.|.|++++.++...... ...........++|.+..-..+|...|+|.|.|..-. .+..+.|.|
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V 79 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV 79 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence 679999976 677799999999999654221 1111111224566777666666777899999997532 233444443
No 279
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.64 E-value=6.4e-07 Score=61.67 Aligned_cols=37 Identities=22% Similarity=0.408 Sum_probs=34.2
Q ss_pred ccceEEEeecCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy16652 332 SDTSLRVITIERRQFGQYACKAAN-KYGSAQKEIELFD 368 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 368 (384)
.+.+|.|.+++.+|+|.|.|.+.+ +.|+.++.+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 568899999999999999999999 7999999999987
No 280
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.63 E-value=2.6e-07 Score=61.84 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=47.1
Q ss_pred eEEEEEEecc-cCCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE
Q psy16652 200 TVYLYCYANG-FPAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV 268 (384)
Q Consensus 200 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l 268 (384)
++.|.|.+.| .|.+.++|++++..+..... .....+.|.+.....+|.|.|+|.|.|..... ....++|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 3689999976 68789999999876543211 11123468888888888999999999865432 2334444
No 281
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.63 E-value=2.3e-07 Score=62.03 Aligned_cols=75 Identities=27% Similarity=0.416 Sum_probs=50.8
Q ss_pred cEEEEEEeecCCC--ccEEEEEeCCCCCCcccceec-cCcee---eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 89 TADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISM-SGSLI---IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 89 ~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
+|+|.|.+..... ..+.|++.........+.... ..... ...+|+.+......+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999876543 379999987532222222221 11111 23568887776557889999999999999999996
Q ss_pred E
Q psy16652 163 V 163 (384)
Q Consensus 163 ~ 163 (384)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
No 282
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.62 E-value=2.3e-07 Score=66.02 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=53.7
Q ss_pred CCCcccccCCcEEEEEEEeccCCCeEEEEECCEE------e--------cCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ------I--------MNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
+....+.+|++++|.|.+.+.+...+.|++.... + ...+++.+... .......|+|.+++.+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLD---KSRKSSSLHISAAQLSD 81 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEc---ccCCEEEEEECCCCHHH
Confidence 4456788999999999998877779999985311 0 01233332211 11245689999999999
Q ss_pred CeEEEEEEEeCCc
Q psy16652 346 FGQYACKAANKYG 358 (384)
Q Consensus 346 ~G~Y~C~a~n~~g 358 (384)
+|.|.|.+.+..+
T Consensus 82 sG~Y~C~~~~~~~ 94 (109)
T cd04983 82 SAVYFCALSESGG 94 (109)
T ss_pred CEEEEEEEecCCC
Confidence 9999999997653
No 283
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.61 E-value=5.2e-07 Score=61.65 Aligned_cols=82 Identities=10% Similarity=0.191 Sum_probs=54.4
Q ss_pred EEecCCCcccccCCcEEEEEEEec-cCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 276 ITINRPRQGQALQYDAILECHVEA-YPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 276 ~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+.+.+....+.+|+.++|.|.+.| .|.+. +.|++++.++..... .. ..........+|++..-+.+|.-.|+|.
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~-~~--~~~~~~~~~stlt~~~~r~D~g~~~sC~ 80 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF-GD--NTKSPVNAPATITITVDREDHGANFSCE 80 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee-cc--ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence 445555566789999999999977 66665 799999999964321 11 0011112345677665544445599999
Q ss_pred EEeCCcce
Q psy16652 353 AANKYGSA 360 (384)
Q Consensus 353 a~n~~g~~ 360 (384)
|.+..+..
T Consensus 81 A~l~l~~~ 88 (100)
T cd05755 81 TELDLRPE 88 (100)
T ss_pred EEeccCcc
Confidence 99988754
No 284
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.59 E-value=2.7e-07 Score=61.42 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=46.5
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
++|.|.+.| +|.+.++|+++|.++.............+.....+.|.+.....++...|+|.|.+..-..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~~ 72 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLNA 72 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcCC
Confidence 579999977 6777999999999986443222222111222234556676555667779999999976543
No 285
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.59 E-value=9.2e-07 Score=62.08 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=56.7
Q ss_pred cCCcEEEEEEEeccC-------CCeEEEEECC-----EEe----cCC----------CceeeeeeeccCccccceEEEee
Q psy16652 287 LQYDAILECHVEAYP-------PPAIVWIKDG-----VQI----MNN----------QHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p-------~~~v~W~~~~-----~~~----~~~----------~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
.|++++|.|...-.| .+.+.|.+.. ... ..+ +|..+. .........+|.|.+
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~--~~~~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLP--GYPKNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEee--cCCCCCceEEEEECC
Confidence 378899999975332 3579998741 111 011 111111 111122467899999
Q ss_pred cCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 341 IERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
++.+|+|.|.|.+.......+..+.|.|.+.
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~gv 109 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTGV 109 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 9999999999999998888899999999864
No 286
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.59 E-value=1.2e-07 Score=62.42 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=49.9
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+|.|...+.......+. ++|.|.+.+.+ ...+.|+. ... ...............|.|.+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~~------------------~~~~~~~~~~~~~~~L~i~~ 60 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SNP------------------SFNSNSRGSSSSNSTLTISN 60 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EEE------------------EEEEEEEEEEEEEEEEEESS
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cCC------------------ceeeeeeeccceeeEEEEcc
Confidence 36677766666655555 99999998765 88999991 000 00000111123455799999
Q ss_pred cCCCCCeeEEEEEEE
Q psy16652 151 IQETDAGIYKCEVII 165 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~ 165 (384)
+..+|.|.|+|.+.|
T Consensus 61 v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 61 VTRSDNGTYTCIASN 75 (75)
T ss_dssp CCGGGTEEEEEEEEE
T ss_pred CCHHhCcEEEEEEEC
Confidence 999999999999974
No 287
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.59 E-value=2.2e-05 Score=67.18 Aligned_cols=158 Identities=17% Similarity=0.239 Sum_probs=99.1
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWR 218 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~ 218 (384)
...|.|..++..++|.|+..+.+..+. .....+.|....+|.+..... .+.+|+...-.|.+.. +|+. .+.|+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~---PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf 273 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH---PSLKGENYRAVCVVASYFPHSSVKLRWY 273 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC---ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 356999999999999999887543222 234455666688888765433 3678999999999966 4443 69999
Q ss_pred eCCCcccccCc-----------eeEeccEEEEcCC-CCCCCeEEEEEEEeCCCCce----eeEEEEEEEecCeEEecCCC
Q psy16652 219 RDNSAALSTGG-----------SIYRGNILKIPNI-TKTDRGTYYCVAQNGVGRGM----KRNIAVEVEFAPVITINRPR 282 (384)
Q Consensus 219 ~~~~~~~~~~~-----------~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~ 282 (384)
+++..+..... .....++|++... ..+..-..+|.+........ ++...-.|..+|.+.+.
T Consensus 274 ~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~--- 350 (486)
T PHA03273 274 KNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT--- 350 (486)
T ss_pred eCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE---
Confidence 99987762211 1112234555443 22333468999997544321 22333445556655542
Q ss_pred cccccCCcEEEEEEEeccCC--CeEEEEECC
Q psy16652 283 QGQALQYDAILECHVEAYPP--PAIVWIKDG 311 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~ 311 (384)
.+++ ...|.+.--|. ..+.|..++
T Consensus 351 ---F~~G--~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 351 ---VEDG--DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred ---EeCC--EEEEecccccCCCeeEEEEccC
Confidence 2222 34588877665 589999877
No 288
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.57 E-value=8.5e-07 Score=58.07 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=51.2
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccCc-------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTGG-------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
+.|.|.+.| .|.+.|+|++++..+..... .....++|.+..-..+|+..|+|.|.|..-........|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 689999865 77789999999977754322 1223457888777777777899999996544445666666654
No 289
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.57 E-value=4.2e-07 Score=62.45 Aligned_cols=72 Identities=25% Similarity=0.345 Sum_probs=51.1
Q ss_pred CceEEEEEEecccCCCeEEEEeCCCcccccC-----------------c--eeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTG-----------------G--SIYRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 198 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~-----------------~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
|++++|.|.........+.|++......... + ....+..|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999988765556899998764321110 0 01134689999999999999999999876
Q ss_pred CCceeeEEEEE
Q psy16652 259 GRGMKRNIAVE 269 (384)
Q Consensus 259 ~~~~~~~~~l~ 269 (384)
+......+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 65555555554
No 290
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.56 E-value=9.5e-07 Score=62.79 Aligned_cols=85 Identities=13% Similarity=0.246 Sum_probs=55.0
Q ss_pred CCCcccccCCcEEEEEEEeccC----CCeEEEEE---------------CCEEecC-C----CceeeeeeeccCccccce
Q psy16652 280 RPRQGQALQYDAILECHVEAYP----PPAIVWIK---------------DGVQIMN-N----QHYSVSHFATSDEFSDTS 335 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~---------------~~~~~~~-~----~~~~~~~~~~~~~~~~~~ 335 (384)
++...+..|+.+.|.|...... ...+.|.+ +|..... . +|..+.. .....+.+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS 81 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS 81 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence 3445678999999999996633 23799944 3333221 1 1222211 11235678
Q ss_pred EEEeecCCCCCeEEEEEEEeCCcce--EEEEEEE
Q psy16652 336 LRVITIERRQFGQYACKAANKYGSA--QKEIELF 367 (384)
Q Consensus 336 l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~ 367 (384)
|.|.+++.+|.|.|+|.+.|.-+-. ...+.|.
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred EEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 9999999999999999999976533 3445554
No 291
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.56 E-value=5.1e-07 Score=64.27 Aligned_cols=75 Identities=15% Similarity=0.266 Sum_probs=51.9
Q ss_pred cCCCcccccCCcEEEEEEEeccCCCeEEEEECCE--Eec----------------CCCceeeeeeeccCccccceEEEee
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV--QIM----------------NNQHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
.|....+.+|+.++|.|.+.+ +...+.||+... .+. ...++.... ......+|+|.+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~ 78 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASR----PSLTRSSLTIKS 78 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEEC----cCCCccEEEECC
Confidence 344567889999999999988 677899998532 110 011221111 111356799999
Q ss_pred cCCCCCeEEEEEEEeCCc
Q psy16652 341 IERRQFGQYACKAANKYG 358 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~g 358 (384)
++.+|+|.|.|.+.+..+
T Consensus 79 ~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 79 AEPEDSAVYLCASSLGGG 96 (110)
T ss_pred CChhhCEEEEEEeeCCCC
Confidence 999999999999987643
No 292
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.56 E-value=8.6e-07 Score=63.37 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCcccccCCcEEEEEEEeccC----CCeEEEEEC----CEE--e---c------CCCceeeee-eeccCccccceEEEe
Q psy16652 280 RPRQGQALQYDAILECHVEAYP----PPAIVWIKD----GVQ--I---M------NNQHYSVSH-FATSDEFSDTSLRVI 339 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~----~~~--~---~------~~~~~~~~~-~~~~~~~~~~~l~i~ 339 (384)
+..+.+.+|+.++|.|.....+ ...+.|++. +.+ + . ...++.... ........+.+|+|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3445678999999999986433 236999752 111 1 0 011111110 000112245679999
Q ss_pred ecCCCCCeEEEEEEEeCCcc
Q psy16652 340 TIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~~g~ 359 (384)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999997664
No 293
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.54 E-value=9.4e-07 Score=58.92 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=46.5
Q ss_pred EEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 291 AILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 291 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.|.|.+.| +|.+.|.|+++|.++..... .......+ .....+.|.+.....+|...|+|.|.+.....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~ 72 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD 72 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence 679999977 58889999999998865432 22221121 11123556666666677789999999987543
No 294
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.54 E-value=0.00021 Score=60.28 Aligned_cols=235 Identities=15% Similarity=0.252 Sum_probs=130.2
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeC--------------CCCCCcccc--eeccC--------
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMD--------------TAKKMEPLP--ISMSG-------- 124 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--------------~~~~~~~~~--~~~~~-------- 124 (384)
....|.|.-..+++.|..+++-.+.|...-.|+.+-.|..-. +......+. +...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (490)
T PHA03271 91 AHKMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRP 170 (490)
T ss_pred cccCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCH
Confidence 344577777777888889999999999877666555554211 000000000 00000
Q ss_pred -----------------ceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEEEEe-cCCcc
Q psy16652 125 -----------------SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVELIVR-RPPII 185 (384)
Q Consensus 125 -----------------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~~~~ 185 (384)
.....+.+|-+-.........|.|.++...|+|.|+-...+..... ..+.+.+.+. .+|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV 250 (490)
T PHA03271 171 SELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV 250 (490)
T ss_pred HHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc
Confidence 0011344666655555667789999999999996644443222222 2333444444 45555
Q ss_pred ccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee------------EeccEEEEcCCCCCCCeEE
Q psy16652 186 SDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI------------YRGNILKIPNITKTDRGTY 250 (384)
Q Consensus 186 ~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y 250 (384)
.....+ +..|+...-.|.+.. +|+. .+.|+++|.......... ..-++|.+.....+..-..
T Consensus 251 sV~a~P---VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsL 327 (490)
T PHA03271 251 DVLAPP---VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKI 327 (490)
T ss_pred cccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCc
Confidence 543332 578999999999966 4443 699999987664432211 1112344433333333478
Q ss_pred EEEEEeCCCCce---eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCC-CeEEEEECCEEe
Q psy16652 251 YCVAQNGVGRGM---KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP-PAIVWIKDGVQI 314 (384)
Q Consensus 251 ~C~~~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~ 314 (384)
+|.+........ ++...-.|..+|.+.+ ..+++ ...|.+.--|. ..+.|..++...
T Consensus 328 RCeV~W~rd~v~s~rnAaatP~VY~~P~ISv------~FedG--~AVCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 328 SCLVAWKQGDMISTTNATAIPTVYHHPRISL------AFKDG--YAICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred eEEEEEccCCceeeeecccCCccccCCeEEE------EEeCC--EEEEeccccCCCcEEEEEecCCCC
Confidence 999997544321 2222233444454443 22222 23477655443 389999887654
No 295
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.52 E-value=1.7e-06 Score=60.11 Aligned_cols=76 Identities=20% Similarity=0.398 Sum_probs=51.2
Q ss_pred cEEEEEEEeccC---CCeEEEEECCE-----Eec----C-C--------CceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652 290 DAILECHVEAYP---PPAIVWIKDGV-----QIM----N-N--------QHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348 (384)
Q Consensus 290 ~~~l~C~~~~~p---~~~v~W~~~~~-----~~~----~-~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 348 (384)
.++|.|.....+ ...+.|++... .+. . + +|..+. ......+.+|+|.+++.+|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~---~~~~~~~~sL~I~nv~~sD~Gt 78 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFE---TPNPIADGALILRNAVQADEGK 78 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEe---CCCCCCceEEEEecCccccceE
Confidence 578999986543 23799998321 110 0 0 122221 1112246779999999999999
Q ss_pred EEEEEEe-CCcceEEEEEEEE
Q psy16652 349 YACKAAN-KYGSAQKEIELFD 368 (384)
Q Consensus 349 Y~C~a~n-~~g~~~~~~~l~v 368 (384)
|.|.+.+ +.|..++.+.|.|
T Consensus 79 Y~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 79 YKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEEeCCCCCeeeEEEEEe
Confidence 9999998 7888888888887
No 296
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.51 E-value=3.3e-06 Score=59.43 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=37.1
Q ss_pred ccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
.+.+|.|.+++.+|+|.|.|.+.+.....+..+.|.|.+.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~Gv 116 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSGV 116 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 4678999999999999999999999999999999999875
No 297
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.50 E-value=5.8e-07 Score=62.11 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=53.8
Q ss_pred ccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCc----eeeeeee-----c-cCccccceEEEeecCCCCCeEEEEEEE
Q psy16652 286 ALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQH----YSVSHFA-----T-SDEFSDTSLRVITIERRQFGQYACKAA 354 (384)
Q Consensus 286 ~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~----~~~~~~~-----~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 354 (384)
.+|++++|.|.... .....+.|++....+..... ....... . .......+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 46899999998854 34447999987533321110 0000000 0 001235789999999999999999999
Q ss_pred eCCcce-EEEEEEEE
Q psy16652 355 NKYGSA-QKEIELFD 368 (384)
Q Consensus 355 n~~g~~-~~~~~l~v 368 (384)
+..|.. ...+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 987755 56677765
No 298
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.48 E-value=1.9e-06 Score=61.95 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCCcccccCCcEEEEEEEeccC----CCeEEEEECCE------Ee-c--C-------CCceeeee-eeccCccccceEEE
Q psy16652 280 RPRQGQALQYDAILECHVEAYP----PPAIVWIKDGV------QI-M--N-------NQHYSVSH-FATSDEFSDTSLRV 338 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~------~~-~--~-------~~~~~~~~-~~~~~~~~~~~l~i 338 (384)
|..+.+..|+.++|.|...... ...+.|++... .+ . . ..++.... ..........+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 3445678999999999986532 23699987321 11 0 0 11111000 00111123467999
Q ss_pred eecCCCCCeEEEEEEEeCCcce--EEEEEEE
Q psy16652 339 ITIERRQFGQYACKAANKYGSA--QKEIELF 367 (384)
Q Consensus 339 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~ 367 (384)
.+++.+|+|.|.|.+.|..... ...+.|.
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 9999999999999999876542 2345554
No 299
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.47 E-value=2.6e-06 Score=58.04 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=51.7
Q ss_pred cEEEEEEEeccCCC-eEEEEECCE----Eec-----CC--------CceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 290 DAILECHVEAYPPP-AIVWIKDGV----QIM-----NN--------QHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 290 ~~~l~C~~~~~p~~-~v~W~~~~~----~~~-----~~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.++|.|.....+.. .|.|.+... .+. .+ +|..+. .....+.+|.|.+++.+|+|.|.|
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~----~~~~~d~sl~i~nv~~~D~G~Y~C 77 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK----NYSLLDATIMLENVGFSDIGVYIC 77 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc----CCCCCccEEEEeCCCccccEEEEE
Confidence 57899998653332 799987421 111 00 122221 122347889999999999999999
Q ss_pred EEE-eCCcceEEEEEEEE
Q psy16652 352 KAA-NKYGSAQKEIELFD 368 (384)
Q Consensus 352 ~a~-n~~g~~~~~~~l~v 368 (384)
.+. .+.|+.+++..|.|
T Consensus 78 ~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEeCCCCCeeEEEEEEE
Confidence 975 58999999999887
No 300
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.45 E-value=2.5e-06 Score=59.07 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCcEEEEEEEeccCCC-eEEEEECCE----Eec-----CC----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 288 QYDAILECHVEAYPPP-AIVWIKDGV----QIM-----NN----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~-~v~W~~~~~----~~~-----~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|++++|.|........ .+.|++... .+. .+ ..+.-............+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 6789999997654333 699998431 110 00 111111111122235678999999999999999998
Q ss_pred E-eCCcceEEEEEEEE
Q psy16652 354 A-NKYGSAQKEIELFD 368 (384)
Q Consensus 354 ~-n~~g~~~~~~~l~v 368 (384)
. .+.|+....+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 47888888888877
No 301
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.45 E-value=2.5e-06 Score=59.18 Aligned_cols=86 Identities=15% Similarity=0.286 Sum_probs=61.7
Q ss_pred eCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccce--eccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPI--SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
++....+..|+.++|.|.+.+.. ...+.|+|..... .+-... ..+.......+++....+.......|.|.+++
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~-lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSA-VEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCC-cEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 45566788999999999997642 3689999977652 121111 11221112467778888888889999999999
Q ss_pred CCCCeeEEEEEE
Q psy16652 153 ETDAGIYKCEVI 164 (384)
Q Consensus 153 ~~d~G~Y~C~~~ 164 (384)
.+|++.|.|...
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999753
No 302
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.44 E-value=1.5e-06 Score=61.40 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=50.0
Q ss_pred ccccCCcEEEEEEEecc-CCCeEEEEECCEE-----ec------------CCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 284 GQALQYDAILECHVEAY-PPPAIVWIKDGVQ-----IM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
.+..|+.++|.|.+.+. +...+.|++.... +. ...++.+... ......+|+|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRD---SSKSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEe---ccCCEEEEEECCCCHHH
Confidence 36789999999999876 5668999984321 10 0122222111 11135689999999999
Q ss_pred CeEEEEEEEeCCc
Q psy16652 346 FGQYACKAANKYG 358 (384)
Q Consensus 346 ~G~Y~C~a~n~~g 358 (384)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998876
No 303
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.43 E-value=3.9e-06 Score=54.82 Aligned_cols=78 Identities=10% Similarity=0.170 Sum_probs=57.8
Q ss_pred CcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
...+..|++++|+|.....+.| .+.|...+........ ....+|.+..++..|+|.++|.++-....
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~~k~ 76 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVNSSE 76 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEECceE
Confidence 3456789999999999654454 9999876543321110 24678999999999999999999877666
Q ss_pred eEEEEEEEEee
Q psy16652 360 AQKEIELFDRE 370 (384)
Q Consensus 360 ~~~~~~l~v~~ 370 (384)
.+..+.|.|.+
T Consensus 77 ~~~~~~V~Vl~ 87 (88)
T cd07694 77 KTLKLDIKVLA 87 (88)
T ss_pred EEEEeeEEEEe
Confidence 67777777754
No 304
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.41 E-value=4.6e-06 Score=58.72 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=47.0
Q ss_pred CcccccCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 282 RQGQALQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
......|+.++|.|.+.| +|. ..+.|++||..+..... .......+ .+...+.|.+.....++.-.|+|.+.+...
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence 334556788999999988 453 48999999999864322 22111111 222334455554333333459999999764
Q ss_pred c
Q psy16652 359 S 359 (384)
Q Consensus 359 ~ 359 (384)
.
T Consensus 94 ~ 94 (111)
T cd05772 94 Q 94 (111)
T ss_pred C
Confidence 4
No 305
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.35 E-value=2e-06 Score=59.59 Aligned_cols=86 Identities=20% Similarity=0.329 Sum_probs=52.4
Q ss_pred CeEEecCCC-cccccCCcEEEEEEEec-cC-CCeEEEEECCEEecCCCceee-eeeeccCccccceEEEeecCCCCCeEE
Q psy16652 274 PVITINRPR-QGQALQYDAILECHVEA-YP-PPAIVWIKDGVQIMNNQHYSV-SHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 274 p~~~~~~~~-~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
|.+.+.++. .....++.++|.|.+.| +| ...+.|++||.++..+..... .....+.+...+.|.+......+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 444443333 33446778999999998 45 338999999999854321111 111122233344566655555567799
Q ss_pred EEEEEeCCcc
Q psy16652 350 ACKAANKYGS 359 (384)
Q Consensus 350 ~C~a~n~~g~ 359 (384)
+|.+....-.
T Consensus 82 sC~V~H~~l~ 91 (100)
T cd07699 82 TCEVTHEGLS 91 (100)
T ss_pred EEEEEecCCC
Confidence 9999987643
No 306
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.33 E-value=3.5e-06 Score=57.39 Aligned_cols=73 Identities=21% Similarity=0.341 Sum_probs=45.3
Q ss_pred CCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 288 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
|+.+.|.|.+ .++|+|.+.|+.++..+.............+.....+.|.+..-..++...++|.|.+..-..
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 6799999987 568989999999998772111111111111111123556666555556778999999987544
No 307
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.33 E-value=2.6e-06 Score=60.13 Aligned_cols=73 Identities=14% Similarity=0.249 Sum_probs=49.1
Q ss_pred cCCCcccccCCcEEEEEEEeccC-CCeEEEEECC--E---EecC---------CCceeeeeeeccCccccceEEEeecCC
Q psy16652 279 NRPRQGQALQYDAILECHVEAYP-PPAIVWIKDG--V---QIMN---------NQHYSVSHFATSDEFSDTSLRVITIER 343 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~ 343 (384)
.|....+.+|++++|.|.+.+.. ...+.|++.. . .+.. ..++... .......|.|.+++.
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~~~~ 80 (106)
T cd04980 6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISRVEP 80 (106)
T ss_pred CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECCCCh
Confidence 34456688999999999997755 5689999843 1 1110 0122111 112345699999999
Q ss_pred CCCeEEEEEEEeC
Q psy16652 344 RQFGQYACKAANK 356 (384)
Q Consensus 344 ~d~G~Y~C~a~n~ 356 (384)
+|+|.|.|.+.+.
T Consensus 81 ~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 81 EDAAVYYCQQYGT 93 (106)
T ss_pred HHCEEEEEEEeCC
Confidence 9999999998754
No 308
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.31 E-value=6.1e-06 Score=56.56 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=46.9
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--c--eeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--G--SIYRGNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
...+.+|++++|.|.... ....+.|+|++....... . .......+.|..++.+|+|.|+|....
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 345789999999998755 456799999887543211 1 111234789999999999999999864
No 309
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.29 E-value=4.1e-06 Score=60.13 Aligned_cols=86 Identities=14% Similarity=0.230 Sum_probs=55.1
Q ss_pred CCCcccccCCcEEEEEEEe-ccCCCeEEEEECCE-----Eec---CC-----------CceeeeeeeccCccccceEEEe
Q psy16652 280 RPRQGQALQYDAILECHVE-AYPPPAIVWIKDGV-----QIM---NN-----------QHYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~-----~~~---~~-----------~~~~~~~~~~~~~~~~~~l~i~ 339 (384)
+....+.+|+.+.|.|... ......+.|++... .+. .. .+..+.. .......+|.|.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~i~ 84 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSG---NGSQNNFSLTIK 84 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEE---ETTTTEEEEEES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeee---cccCCeEEEEEC
Confidence 3445678999999999998 44555899998322 111 00 0111110 011234579999
Q ss_pred ecCCCCCeEEEEEEEeC-CcceEEEEEEEE
Q psy16652 340 TIERRQFGQYACKAANK-YGSAQKEIELFD 368 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~-~g~~~~~~~l~v 368 (384)
+++.+|+|.|.|.+... .......+.|.|
T Consensus 85 ~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 85 NLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999997 334444555554
No 310
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.29 E-value=5.5e-06 Score=56.45 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=47.4
Q ss_pred cCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652 287 LQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362 (384)
Q Consensus 287 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 362 (384)
.++.++|.|.+.| +|. ..+.|.++|..+..+.... ......+.....+.|.+......+...|+|.+.......+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 4566899999999 454 3799999999874332111 11111222223445656655555677999999998765443
No 311
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.28 E-value=1.1e-05 Score=55.02 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=49.5
Q ss_pred CcEEEEEEEecc-CCCeEEEEECCE----EecC-----C----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652 289 YDAILECHVEAY-PPPAIVWIKDGV----QIMN-----N----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354 (384)
Q Consensus 289 ~~~~l~C~~~~~-p~~~v~W~~~~~----~~~~-----~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 354 (384)
+.++|.|..... ....+.|.+... .+.. + +.+.-+..-......+.+|+|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 357899998542 233688988432 1100 0 1111111111111246889999999999999999997
Q ss_pred e-CCcceEEEEEEE
Q psy16652 355 N-KYGSAQKEIELF 367 (384)
Q Consensus 355 n-~~g~~~~~~~l~ 367 (384)
. +.|+.++.+.|.
T Consensus 81 t~P~g~~~~~i~~~ 94 (96)
T cd05889 81 TYPQGSWEKVIEVV 94 (96)
T ss_pred eCCCCCeEEEEEEE
Confidence 7 588888887765
No 312
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.28 E-value=1e-05 Score=55.38 Aligned_cols=81 Identities=17% Similarity=0.380 Sum_probs=46.4
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
+|.+.+.+.... ++.++|.|.+.|+ |.+ .+.|.++|..+...... .......+.....+.|.+ ...+.+.|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~y 75 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARY 75 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEE
Confidence 455554433322 6789999999995 544 89999999644322211 111111111112233333 34477899
Q ss_pred EEEEEeCCcc
Q psy16652 350 ACKAANKYGS 359 (384)
Q Consensus 350 ~C~a~n~~g~ 359 (384)
+|.+.+....
T Consensus 76 tC~V~H~~~~ 85 (93)
T cd07698 76 SCRVEHSGLK 85 (93)
T ss_pred EEEEEeCCCC
Confidence 9999987643
No 313
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.27 E-value=1.5e-05 Score=60.10 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=59.4
Q ss_pred eEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccc-----------cCcee-E-----eccEEEEcCCCCCCCeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALS-----------TGGSI-Y-----RGNILKIPNITKTDRGTYYCV 253 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~-----------~~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~ 253 (384)
...+.+|++++|.|... +...+++.|+|..+.+.. -.++. . ....|+|.+++.+|+|.|+|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 45688999999999984 556778999996442210 00111 1 346899999999999999999
Q ss_pred EEe-CCCCceeeEEEEEEEecC
Q psy16652 254 AQN-GVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 254 ~~~-~~~~~~~~~~~l~v~~~p 274 (384)
+.. ..|...+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 886 445345778888887543
No 314
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.26 E-value=5.1e-06 Score=57.70 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=48.1
Q ss_pred cccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeee----ccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 283 QGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFA----TSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
..+..+..++|.|.+.|+.+. .+.|++||.++............ .+.+...+.|.+..-...+...|+|.+...
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 334457889999999995444 68999999987644322211111 122223445656544445667899999987
Q ss_pred Ccc
Q psy16652 357 YGS 359 (384)
Q Consensus 357 ~g~ 359 (384)
...
T Consensus 91 ~l~ 93 (102)
T cd05768 91 ALP 93 (102)
T ss_pred CCC
Confidence 543
No 315
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.24 E-value=6e-06 Score=59.41 Aligned_cols=74 Identities=12% Similarity=0.296 Sum_probs=49.6
Q ss_pred CCCcccccCCcEEEEEEEec--cCCCeEEEEECC--EEe------c-----------CCCceeeeeeeccCccccceEEE
Q psy16652 280 RPRQGQALQYDAILECHVEA--YPPPAIVWIKDG--VQI------M-----------NNQHYSVSHFATSDEFSDTSLRV 338 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i 338 (384)
+....+.+|+.++|.|.+.+ .+.+.+.|++.. ..+ . ...++.+.. . .......|+|
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I 81 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK--D-VGKSTSTLTI 81 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE--E-CCCCEEEEEE
Confidence 33456788999999999977 677789999842 111 0 012222211 0 1113567999
Q ss_pred eecCCCCCeEEEEEEEeC
Q psy16652 339 ITIERRQFGQYACKAANK 356 (384)
Q Consensus 339 ~~~~~~d~G~Y~C~a~n~ 356 (384)
.+++.+|+|.|.|.+...
T Consensus 82 ~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 82 QNLEKEDSATYYCAYWES 99 (116)
T ss_pred EECCHHHCEEEEEEEecC
Confidence 999999999999998753
No 316
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.24 E-value=1.6e-05 Score=51.95 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=47.4
Q ss_pred EeecCceEEEEEEecccC--CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 194 IVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+..|++++|+|.....+ .+.+.|...+..... .......+|.+..+...|+|.++|.++.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 477899999999985533 459999986654321 11235668999999999999999999865
No 317
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=6.4e-06 Score=57.20 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=46.0
Q ss_pred ccccCCcEEEEEEEecc--CCCeEEEEECCE--Ee---c---------CCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652 284 GQALQYDAILECHVEAY--PPPAIVWIKDGV--QI---M---------NNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~--~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 347 (384)
.+.+|++++|.|...+. ....+.|++... .+ . ...++... .......|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence 46789999999998764 455799998431 11 0 01122211 1113567999999999999
Q ss_pred EEEEEEEeC
Q psy16652 348 QYACKAANK 356 (384)
Q Consensus 348 ~Y~C~a~n~ 356 (384)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998753
No 318
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.23 E-value=9.7e-06 Score=55.46 Aligned_cols=80 Identities=16% Similarity=0.307 Sum_probs=48.6
Q ss_pred eeeeCcceeeeccCcEEEEEEeecC-CCcc--EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYA-DDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+.+.+.+..+.+|+.++|+|.+.+. |... |.||+++........ .+ ..........+|.+..-
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~----------~~----~~~~~~~~~stlt~~~~ 69 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPF----------GD----NTKSPVNAPATITITVD 69 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccccee----------cc----ccCCCceeEEEEEEecc
Confidence 4455566667999999999999874 5555 799998876422110 00 00111223345666544
Q ss_pred CCCCCeeEEEEEEEccC
Q psy16652 152 QETDAGIYKCEVIISLN 168 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~ 168 (384)
+.+|...|+|++.++..
T Consensus 70 r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 70 REDHGANFSCETELDLR 86 (100)
T ss_pred hhhCCcEEEEEEEeccC
Confidence 44444499999986543
No 319
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.22 E-value=1.1e-05 Score=51.95 Aligned_cols=68 Identities=24% Similarity=0.503 Sum_probs=47.9
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
+.|.|.+.+.+.+.+.|++++......... ..............|.|..+...|.|.|.|.+.+..+.
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 368999988777799999998776543321 11111112234567899999999999999999988743
No 320
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.21 E-value=6e-06 Score=56.53 Aligned_cols=82 Identities=13% Similarity=0.168 Sum_probs=47.5
Q ss_pred cCCCcccccCCcEEEEEEEecc--CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652 279 NRPRQGQALQYDAILECHVEAY--PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~--p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
+|+...+..++.++|.|.+.|. |.. .+.|.+++................+.....+.|.+..-.+.+.-.|+|.+..
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H 84 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTH 84 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEEC
Confidence 3444456678999999999998 333 7899999754321111011111222222234455554444455589999998
Q ss_pred CCcce
Q psy16652 356 KYGSA 360 (384)
Q Consensus 356 ~~g~~ 360 (384)
..-..
T Consensus 85 ~~l~~ 89 (96)
T cd07696 85 PDLPT 89 (96)
T ss_pred CCCCC
Confidence 76443
No 321
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.17 E-value=3.3e-05 Score=52.35 Aligned_cols=69 Identities=22% Similarity=0.329 Sum_probs=42.4
Q ss_pred ccCCcEEEEEEEeccCCC--eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 286 ALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
..|...+|.|.+.|+.++ .+.|.+||..+. +.. ........+ +........+..++...|+|.+.....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~---tyq~~s~l~~~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDW---TFYLLKSTEFTPTKGDEYACRVRHNSM 84 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCC---CEEEEEEEEECCCCCCeEEEEEEECCC
Confidence 446667899999994443 789999999986 321 111222222 122222233445677789999998654
No 322
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.17 E-value=5.4e-05 Score=51.72 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=44.4
Q ss_pred ccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 286 ALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
..++.++|.|.+.|+ |.. .+.|++||..+..... ........+.....+.|. +..++...|+|.+.......
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~---~~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLE---TTPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEE---EcCCCCCEEEEEEEeCCCCC
Confidence 357889999999994 444 7999999998765411 111111111122223333 33445668999999876543
No 323
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.16 E-value=1.6e-05 Score=56.25 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=55.4
Q ss_pred CeEEecC-CCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCC-Ce
Q psy16652 274 PVITINR-PRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQ-FG 347 (384)
Q Consensus 274 p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d-~G 347 (384)
|.+.+.+ .......++.++|.|.+.|+ |.. .+.|.+||..+..+.......... +.+...+.|.+......+ ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 4444433 33334456789999999984 443 899999999886543211111111 222234556666555544 56
Q ss_pred EEEEEEEeCCcceEEEEE
Q psy16652 348 QYACKAANKYGSAQKEIE 365 (384)
Q Consensus 348 ~Y~C~a~n~~g~~~~~~~ 365 (384)
.|+|.+..........+.
T Consensus 83 ~ytC~V~H~g~~~~~~~~ 100 (115)
T cd05769 83 TFTCIVQFYGGTDTDKWQ 100 (115)
T ss_pred eEEEEEEEeCCccceeee
Confidence 899999998766654433
No 324
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.15 E-value=2.5e-05 Score=53.34 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=43.8
Q ss_pred cCCcEEEEEEEeccCC-C-eEEEEECCEEecCCCc-eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 287 LQYDAILECHVEAYPP-P-AIVWIKDGVQIMNNQH-YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p~-~-~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.++.++|.|.+.|+.+ . .|.|.+||.. ..+.. ........+.+...+.|++..........|+|.+.....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~~ 88 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPST 88 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCCC
Confidence 4667999999999444 3 7999999998 33211 111111123333345566665544445689999998763
No 325
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.15 E-value=2.5e-05 Score=52.06 Aligned_cols=60 Identities=20% Similarity=0.312 Sum_probs=41.8
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccC--------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTG--------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.|.|.+.+ +|.++++|++++..+.... +.....+.|.+.....++.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999965 6888999999987664321 11122335666666666778999999986554
No 326
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.14 E-value=1.7e-05 Score=51.79 Aligned_cols=67 Identities=19% Similarity=0.426 Sum_probs=42.8
Q ss_pred EEEEEEEecc-CC-CeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 291 AILECHVEAY-PP-PAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 291 ~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
++|.|.+.|. |+ ..+.|++||.++..+.... ......+.....+.|.+......+...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6799999985 44 3899999998754332111 111122233334556666656667789999998765
No 327
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.13 E-value=2.2e-05 Score=52.48 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=48.0
Q ss_pred ccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeee-eeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 286 ALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSH-FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
..++.++|.|.+.++ |.. .|.|+++|..+.......... ...+.+...+.|.+. ..+...|+|.+.......
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~~ 80 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLPE 80 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSSS
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCCC
Confidence 448899999999984 544 799999999987654333222 222333333445555 566668999999876543
No 328
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.12 E-value=1.1e-05 Score=55.98 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=47.7
Q ss_pred ccccCCcEEEEEEEec-cCCCeEEEEECCEE-----ec--------CCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 284 GQALQYDAILECHVEA-YPPPAIVWIKDGVQ-----IM--------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
.+.+|++++|.|.... .....+.|++.... +. ...++.+.. ........|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~Y 79 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD---DPDNGVFTVTLNQLRKEDAGWY 79 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe---cCCCCEEEEEEcCCCHHHCEEE
Confidence 4678999999999865 34557999985421 10 112222211 1112356799999999999999
Q ss_pred EEEEEeCC
Q psy16652 350 ACKAANKY 357 (384)
Q Consensus 350 ~C~a~n~~ 357 (384)
.|.+....
T Consensus 80 ~C~~~~~~ 87 (98)
T cd05716 80 WCGVGDDG 87 (98)
T ss_pred EEEcccCC
Confidence 99998765
No 329
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.12 E-value=8e-05 Score=50.71 Aligned_cols=69 Identities=19% Similarity=0.279 Sum_probs=42.9
Q ss_pred cCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 287 LQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 287 ~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.++..+|.|.+.| +|.. .+.|.+||..+..+... .......+.....+.|.+.. ++...|+|.+.....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~l 85 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWGL 85 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCCC
Confidence 4566899999999 4543 79999999988654221 11222222222334455443 455689999988753
No 330
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.10 E-value=4.1e-05 Score=51.01 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=42.1
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.|.|.+.+ +|.+.|+|++++..+..... .....+.|.+.....++...|+|.+.|....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999976 68889999999876543211 1112345666566677778999999996543
No 331
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.09 E-value=2e-05 Score=56.70 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=49.1
Q ss_pred CCCcccccCCcEEEEEEEecc-CCCeEEEEECC--EE---e-c--------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652 280 RPRQGQALQYDAILECHVEAY-PPPAIVWIKDG--VQ---I-M--------NNQHYSVSHFATSDEFSDTSLRVITIERR 344 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~--~~---~-~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 344 (384)
+....+..|++++|.|..... ....+.|++.. .. + . ..+|+.+.. .......+|+|.+++.+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQLE 82 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCHH
Confidence 445668899999999998753 44579999832 11 1 0 012232221 01123567999999999
Q ss_pred CCeEEEEEEEeC
Q psy16652 345 QFGQYACKAANK 356 (384)
Q Consensus 345 d~G~Y~C~a~n~ 356 (384)
|+|.|.|.+...
T Consensus 83 Dsg~Y~C~~~~~ 94 (116)
T cd07706 83 DSAKYFCALSTL 94 (116)
T ss_pred HCEEEEEEEECC
Confidence 999999999853
No 332
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.08 E-value=1.7e-05 Score=54.78 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=46.8
Q ss_pred eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
..|+.++|.|.+.+. | ...++|++++........ ........++.|.... .|.|......|.|.|+|+
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~---~~~~~~~~~gt~~~~s-------~l~v~~~~~~~~~~y~C~ 80 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT---TTPPVPNSDGTYSVSS-------QLTVSPSDWNSGDTYTCV 80 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee---ccccccCCCCCEEEEE-------EEEECHHHhCCCCCEEEE
Confidence 468999999999886 5 578999998765322111 0011111223333322 577776667799999999
Q ss_pred EEEccC
Q psy16652 163 VIISLN 168 (384)
Q Consensus 163 ~~~~~~ 168 (384)
+.+...
T Consensus 81 v~h~~~ 86 (95)
T cd00098 81 VTHESL 86 (95)
T ss_pred EEeCCC
Confidence 986543
No 333
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.06 E-value=5.3e-05 Score=53.41 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=48.5
Q ss_pred ecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCcccccCc---------eeEeccEEEEcCCCCCCCe
Q psy16652 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALSTGG---------SIYRGNILKIPNITKTDRG 248 (384)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G 248 (384)
..+|..............|+.++|.|.+.+ +|. ..++|++++..+..... .....+.|.+.....+...
T Consensus 3 ~~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~ 82 (111)
T cd05772 3 RAKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHS 82 (111)
T ss_pred ccCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccC
Confidence 344544444344444557888999999988 454 48999999977643211 1222335655544333334
Q ss_pred EEEEEEEeCC
Q psy16652 249 TYYCVAQNGV 258 (384)
Q Consensus 249 ~Y~C~~~~~~ 258 (384)
.|+|.+.|..
T Consensus 83 ~ytC~V~H~~ 92 (111)
T cd05772 83 QVTCEVQHRT 92 (111)
T ss_pred ceEEEEEeCC
Confidence 5999999864
No 334
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.99 E-value=4.8e-05 Score=50.60 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=42.3
Q ss_pred EEEEEEecc-cCCCeEEEEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 201 VYLYCYANG-FPAPTISWRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 201 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++|.|.+.| +|...++|++++..+.... +.....+.|.+.....++...|+|.+.|..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999976 6777999999998754321 11223346777666667777899999985443
No 335
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.95 E-value=0.0001 Score=50.27 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=41.0
Q ss_pred ccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 284 GQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
....+..++|.|.+.| +|.. .+.|.+||..+..+..........+.+...+.|++..-. ....|+|.+....
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3444577899999999 4444 789999999875442111111111111122334444322 2335999999854
No 336
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.93 E-value=3.7e-05 Score=52.47 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=48.7
Q ss_pred CeEEec-CCCcccccCCcEEEEEEEeccC--C-CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 274 PVITIN-RPRQGQALQYDAILECHVEAYP--P-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 274 p~~~~~-~~~~~~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
|.+.+. |.......+..++|.|.+.++. . ..|.|.++|.. ...........++.+...+.|.+..-.+.....|
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 444443 3334455678899999999944 3 27999999875 1111111111222233344565554445555679
Q ss_pred EEEEEeCCc
Q psy16652 350 ACKAANKYG 358 (384)
Q Consensus 350 ~C~a~n~~g 358 (384)
+|.+.+...
T Consensus 82 tC~V~H~~l 90 (99)
T cd04986 82 ACTVTHPEG 90 (99)
T ss_pred EEEEECCCc
Confidence 999998754
No 337
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.92 E-value=4.7e-05 Score=48.93 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=44.5
Q ss_pred EEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEcc
Q psy16652 90 ADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL 167 (384)
Q Consensus 90 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 167 (384)
+.|.|.+.+.+...+.|++.+......... ..............|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 478999988778899999977543211111 011111224455689999999999999999997543
No 338
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.91 E-value=0.0001 Score=50.28 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=41.7
Q ss_pred CcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 289 YDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 289 ~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
....+.|.+ .|.|.+.|.|+++. .............+.....+.|.+.....+|.-.|+|.|.|..-.....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 456788999 57899999999971 1111111111111111123456665555555668999999987544433
No 339
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.89 E-value=5.4e-05 Score=53.43 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=44.6
Q ss_pred ccccCCcEEEEEEEeccC-CCeEEEEECCEE---------e--cC-----------CCceeeeeeeccCccccceEEEee
Q psy16652 284 GQALQYDAILECHVEAYP-PPAIVWIKDGVQ---------I--MN-----------NQHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~---------~--~~-----------~~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
.+.+|+.++|.|.+.+.. ...+.|++.... + .. ..++.... ........|+|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence 467899999999987643 447999984321 0 00 01111110 1111245699999
Q ss_pred cCCCCCeEEEEEEEe
Q psy16652 341 IERRQFGQYACKAAN 355 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n 355 (384)
++.+|+|.|.|...+
T Consensus 79 ~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 79 VKPEDSGTYFCMTVG 93 (107)
T ss_pred CCHHHCEEEEEeEcC
Confidence 999999999999864
No 340
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.87 E-value=0.039 Score=58.88 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=160.4
Q ss_pred EEeeecceEEEEEEEeeec-cchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeC
Q psy16652 32 IHEVTGEKVTSVILLFKMS-VAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMD 110 (384)
Q Consensus 32 i~~~~~~d~G~y~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~ 110 (384)
...++..+.|.|...++.. .-+... .............+.+......+..|++|.|.-.........+.|..++
T Consensus 1661 ~~~vt~~~pG~Y~VtL~aSN~vG~~t-----~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864 1661 GAKLNPLEAGPCDIFLQAANLLGQAT-----ADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred eeEEecCCCceEEEEEEEeeccccee-----eEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence 3455668889999987765 211111 0001111222233444445556778999999876666677789999866
Q ss_pred CCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEE-ccCcceeeeEEEEEecCCccccCC
Q psy16652 111 TAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVII-SLNNKVSAEVELIVRRPPIISDNS 189 (384)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~~~~~~~~~ 189 (384)
.... . .....+ . -+....|.|...+.- +..+.....+.|.|.++..-....
T Consensus 1736 G~s~----~--------~s~p~~--t--------------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~ 1787 (2740)
T TIGR00864 1736 GDDL----E--------TSEPFM--S--------------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIR 1787 (2740)
T ss_pred CCCc----c--------cCCCce--E--------------EEccCCceEEEEEEEEccccccceeEEEEEEeccccceEe
Confidence 4310 0 000000 0 124667888887762 222344556777777665322111
Q ss_pred ---C-ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEE--EEeCCCCcee
Q psy16652 190 ---T-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV--AQNGVGRGMK 263 (384)
Q Consensus 190 ---~-~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--~~~~~~~~~~ 263 (384)
+ ....+..|..+.+.=.+.......+.|..++..... +... ..+..+.|.|+-. |.|..+.. +
T Consensus 1788 ~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-------gk~v---~~Tf~~aG~ytV~L~AsN~vs~~-~ 1856 (2740)
T TIGR00864 1788 AADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-------GKHA---CMTFPDAGTFAIRLNASNAVSGK-S 1856 (2740)
T ss_pred cCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc-------ccee---EEecCCCeEEEEEEEEEcccCcc-e
Confidence 1 111455677777766653323346778776542111 1111 1456678999764 45766554 5
Q ss_pred eEEEEEEEecCe-EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEE-ecCCCceeeeeeeccCccccceEEEeec
Q psy16652 264 RNIAVEVEFAPV-ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRVITI 341 (384)
Q Consensus 264 ~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 341 (384)
.+..+.|+.+.. +.+......+..|+.++|.+.....+..++.|.+.+.. ...+. .. ++. =
T Consensus 1857 ~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~--------------~~--t~~-H 1919 (2740)
T TIGR00864 1857 ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQP--------------GP--RFS-H 1919 (2740)
T ss_pred eeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecC--------------CC--eEE-e
Confidence 667778887763 44445556778899999999997778889999887522 21111 00 111 1
Q ss_pred CCCCCeEE--EEEEEeCCcceEEEEEEEEeeeec
Q psy16652 342 ERRQFGQY--ACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 342 ~~~d~G~Y--~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+....|.| .-.|.|..+...+.+.+.|.++..
T Consensus 1920 sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~ 1953 (2740)
T TIGR00864 1920 SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR 1953 (2740)
T ss_pred ecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc
Confidence 12233555 467788888888888888877743
No 341
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.85 E-value=0.00011 Score=50.96 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=42.8
Q ss_pred eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 84 KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
+..|+.++|.|.+.+. | ...++|+++++..................++.|.+.. .|.|..-...+...|+|
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s-------~L~v~~~~w~~~~~ytC 85 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYS-------KLTVSAEDWNAGDVFTC 85 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEE-------EEEEcHHHhcCCCcEEE
Confidence 3457899999999884 3 5678999998653211100000000000124444433 46664433345568999
Q ss_pred EEEEcc
Q psy16652 162 EVIISL 167 (384)
Q Consensus 162 ~~~~~~ 167 (384)
.+.+..
T Consensus 86 ~V~H~~ 91 (102)
T cd05768 86 VVGHEA 91 (102)
T ss_pred EeEeCC
Confidence 998654
No 342
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.84 E-value=0.00014 Score=50.47 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=49.3
Q ss_pred CCeeeeCccee-eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 73 PTISYISQEQI-KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 73 p~~~~~~~~~~-v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
|.+.+.+.... ...++.++|.|.+.+. | ...|.|+++++...... .........++.|.... .|.+.
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~---~~~~~~~~~dgty~~~s-------~L~v~ 71 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGV---QTSTTEQQSDNTYSLSS-------YLTLT 71 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccE---eccccEECCCCCEEEEE-------EEEEc
Confidence 34433333332 4467889999999884 4 67899999887642110 00111111244555443 46665
Q ss_pred ecCCCCCeeEEEEEEEcc
Q psy16652 150 EIQETDAGIYKCEVIISL 167 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~ 167 (384)
.-..++...|+|++.+..
T Consensus 72 ~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 72 KSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HHHhCCCCeEEEEEEecC
Confidence 554445669999998654
No 343
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.81 E-value=0.0003 Score=48.14 Aligned_cols=80 Identities=20% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+|.+.+.+.... |+.++|.|.+.+. | ...++|++++....... .........++.|.... .|.|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~---~~~~~~~~~d~ty~~~s-------~l~v- 67 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDV---ESGEILPNGDGTYQLWV-------TLEV- 67 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccc---cccceEECCCCeEEEEE-------EEEE-
Confidence 455554443332 7889999999884 4 45899999874211000 00000011122232222 3444
Q ss_pred ecCCCCCeeEEEEEEEcc
Q psy16652 150 EIQETDAGIYKCEVIISL 167 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~ 167 (384)
...|.+.|+|++.+..
T Consensus 68 --~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 68 --PPEDKARYSCRVEHSG 83 (93)
T ss_pred --CCCCCCEEEEEEEeCC
Confidence 4457789999998654
No 344
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.81 E-value=0.061 Score=57.57 Aligned_cols=284 Identities=12% Similarity=0.041 Sum_probs=156.3
Q ss_pred eecceEEEEEEEeeec--cchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCC
Q psy16652 35 VTGEKVTSVILLFKMS--VAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTA 112 (384)
Q Consensus 35 ~~~~d~G~y~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 112 (384)
.+..++|.|...+... ....... .........-.+.+......+..|+.++|.+.........+.|..++..
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s------~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs 1907 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSAS------REFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAA 1907 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceee------eeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCC
Confidence 7789999999987764 2221110 0011122222344445555678999999999887766778888887643
Q ss_pred CCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEE-ccCcceeeeEEEEEecCCccccCCCc
Q psy16652 113 KKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVII-SLNNKVSAEVELIVRRPPIISDNSTR 191 (384)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~ 191 (384)
. ..+ ..+..+. + +-...|.|...+.. +.-......+.+.|.++..-......
T Consensus 1908 ~----~~~-------t~~~t~~--H--------------sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~ 1960 (2740)
T TIGR00864 1908 P----EVL-------QPGPRFS--H--------------SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDC 1960 (2740)
T ss_pred c----eee-------cCCCeEE--e--------------ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCC
Confidence 1 000 0111111 1 12345666665541 11223445555555554322111111
Q ss_pred -eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEE--EeCCCCceeeEEEE
Q psy16652 192 -SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA--QNGVGRGMKRNIAV 268 (384)
Q Consensus 192 -~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~~l 268 (384)
...+..|+...+.-.+....+..+.|+..-..+.........+..++... ...|.|.-.+ .|..+.. +.+..+
T Consensus 1961 c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~---~~~G~~~I~v~A~N~l~s~-n~t~~i 2036 (2740)
T TIGR00864 1961 CAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA---EAAGLLEIQLGAFNALGAE-NITLQL 2036 (2740)
T ss_pred cccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc---CCCcEEEEEEEEEcccCcc-cccEEE
Confidence 11257789999998885445567999865332222222222333333322 4689887654 4666664 555666
Q ss_pred EEEecCeEE-ecCCCcccccCCcEEEEEEEeccCC-CeEEEEECCE-EecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 269 EVEFAPVIT-INRPRQGQALQYDAILECHVEAYPP-PAIVWIKDGV-QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 269 ~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
.|+.+.... +.........+..+.+.|.....+. ..+.|.+++. .....+...... ....
T Consensus 2037 ~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~~~sH-----------------tY~r 2099 (2740)
T TIGR00864 2037 EAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEPRAEH-----------------EYLH 2099 (2740)
T ss_pred EEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCceeEE-----------------EecC
Confidence 776655322 2222344566888999999865443 4899998743 322222111111 1223
Q ss_pred CeEEE--EEEEeCCcceEEEEEEEEeeee
Q psy16652 346 FGQYA--CKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 346 ~G~Y~--C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.|.|. -.|.|......+..++.|...+
T Consensus 2100 ~G~Y~V~V~a~N~VS~~~a~~~i~V~vl~ 2128 (2740)
T TIGR00864 2100 PGDYRVQVNASNLVSFFSAHAEINVQVLA 2128 (2740)
T ss_pred CccEEEEEEEEcceeeeeeEEEEEEEEec
Confidence 48886 5577999888888888887764
No 345
>KOG1480|consensus
Probab=97.80 E-value=1.3e-05 Score=72.70 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=106.6
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
.-|.+...+.+-.+..|.++.|.|.....+. ..-.|....... ...+. ...+..... ....
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~-------~~~~~--d~tsg~~~~------~~si 87 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHE-------KLEGT--DETSGLGVR------EVSI 87 (909)
T ss_pred CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccce-------eeecc--CcccceeEE------eeee
Confidence 5577888899999999999999999865432 233455433210 00000 000000000 0123
Q ss_pred EEeecCCCCCe---eEEEEE--EEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeC
Q psy16652 147 SIKEIQETDAG---IYKCEV--IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRD 220 (384)
Q Consensus 147 ~i~~~~~~d~G---~Y~C~~--~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~ 220 (384)
.|...+.++.| .|.|+- ....+...+....+.+..........+....|..+..+.+.|.. .+.|...+.|+++
T Consensus 88 ~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~ 167 (909)
T KOG1480|consen 88 DISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKN 167 (909)
T ss_pred eeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcccc
Confidence 34444444443 566653 32222111111111111111122233444557788899999986 6778889999999
Q ss_pred CCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 221 NSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 221 ~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
+..+.+..... .....+.+..+...|.|+|+|++.|..+......+.+.+.
T Consensus 168 e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 168 EVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred CCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 88776643332 2345788999999999999999999777655555555544
No 346
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.80 E-value=8e-05 Score=52.19 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=44.4
Q ss_pred cccCCcEEEEEEEeccCCCeEEEEECCEE-------ec---CCCcee-------eeeeeccCccccceEEEeecCCCCCe
Q psy16652 285 QALQYDAILECHVEAYPPPAIVWIKDGVQ-------IM---NNQHYS-------VSHFATSDEFSDTSLRVITIERRQFG 347 (384)
Q Consensus 285 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~-------~~---~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~G 347 (384)
+.+|++++|.|.........+.|++.... +. ...... ...+..........|+|.+++.+|+|
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg 82 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG 82 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence 57899999999986654557999985421 10 000000 00000001113456999999999999
Q ss_pred EEEEEEEe
Q psy16652 348 QYACKAAN 355 (384)
Q Consensus 348 ~Y~C~a~n 355 (384)
.|.|.+.+
T Consensus 83 tY~Ca~~~ 90 (104)
T cd05720 83 YYFCSVAS 90 (104)
T ss_pred EEEEEEcc
Confidence 99998864
No 347
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.77 E-value=0.00012 Score=52.76 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=46.6
Q ss_pred CCcccccCCcEEEEEEEeccC------CCeEEEEECCEE------ec--CC---------CceeeeeeeccCccccceEE
Q psy16652 281 PRQGQALQYDAILECHVEAYP------PPAIVWIKDGVQ------IM--NN---------QHYSVSHFATSDEFSDTSLR 337 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p------~~~v~W~~~~~~------~~--~~---------~~~~~~~~~~~~~~~~~~l~ 337 (384)
..+.+.+|+.++|.|...... ...+.|++.... +. .. +|+... . .......+|.
T Consensus 7 ~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~--~-~~~~~~~sL~ 83 (119)
T cd05712 7 KSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLL--G-DLGKKNCSLL 83 (119)
T ss_pred CEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEe--c-CCCCCEEEEE
Confidence 335678999999999875322 236999985321 10 00 111110 0 1123456799
Q ss_pred EeecCCCCCeEEEEEEEeC
Q psy16652 338 VITIERRQFGQYACKAANK 356 (384)
Q Consensus 338 i~~~~~~d~G~Y~C~a~n~ 356 (384)
|.+++.+|+|.|.|.+...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999988764
No 348
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.74 E-value=0.00023 Score=46.45 Aligned_cols=58 Identities=26% Similarity=0.516 Sum_probs=39.9
Q ss_pred EEEEEEeccc-CC-CeEEEEeCCCccccc----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 201 VYLYCYANGF-PA-PTISWRRDNSAALST----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 201 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
++|.|.+.|+ |. .+++|++++..+... ++.....+.|.+.....++...|+|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999884 55 489999988753221 1122233467776666677789999998854
No 349
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.74 E-value=0.00021 Score=48.52 Aligned_cols=63 Identities=24% Similarity=0.484 Sum_probs=43.6
Q ss_pred CceEEEEEEe-cccCCCeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 198 GQTVYLYCYA-NGFPAPTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 198 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
|+.+.|.|.+ .++|.+.+.|+.++...... .+.....+.|.+..-..++...++|.+.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 7899999987 56899999999998776111 111122346777665556777899999986543
No 350
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.71 E-value=0.00096 Score=45.22 Aligned_cols=97 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee-----eCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
..++...|.++.|.=.........+.|.+.-........++...+.... ...|+.+.. .+.+|.|+.+++.
T Consensus 6 ~~VvgiSG~pl~LrP~~~Qtk~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~----enlaLlIkaAq~q 81 (108)
T PF11465_consen 6 DHVVGISGKPLQLRPSNIQTKVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTS----ENLALLIKAAQPQ 81 (108)
T ss_dssp EEEEEETTS-EEE--SS---SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEET----TTTEEEESS-SGG
T ss_pred cceEEccCCEEEECCCCccceeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeec----cCceEEEeecCcc
Confidence 3445677888888833322235578888866433323333333332222 234666654 3458999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
|+|.|.-++.+..|......+.|.|.
T Consensus 82 DSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 82 DSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp G-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cCceEEEEEEcCCCcEEEEEEEEEee
Confidence 99999999998777767777777664
No 351
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.70 E-value=0.00025 Score=48.32 Aligned_cols=76 Identities=11% Similarity=0.156 Sum_probs=43.8
Q ss_pred CcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 289 YDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 289 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
....+.|.+. |.|.+.|+|+++... ...........+.....+.|.+.....+|...|+|.|.|..-.....+.+.
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g---~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGG---NANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCC---CeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 3467899885 688889999987211 111111111111111234566655555566689999999875555544443
No 352
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.69 E-value=0.00056 Score=46.46 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=47.3
Q ss_pred CceEEeecCceEEE-EEEe-cccCCCeEEEEeCCCcccc------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 190 TRSVIVSEGQTVYL-YCYA-NGFPAPTISWRRDNSAALS------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 190 ~~~~~~~~g~~~~l-~C~~-~~~~~~~v~W~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.+...+.+|+.+.+ .|.+ .+.|.++|+|+.+...... ..+...-.+.+.+...+.+|.-.++|.+.+..-
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 44566788999988 9987 6788999999987433221 112222334566666666677789999998643
No 353
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.66 E-value=0.00017 Score=49.41 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=42.4
Q ss_pred EeecCceEEEEEEeccc--CCC-eEEEEeCCCccc---------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 194 IVSEGQTVYLYCYANGF--PAP-TISWRRDNSAAL---------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~--~~~-~v~W~~~~~~~~---------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.+..|+.++|.|.+.|. |.. .++|.++++... ..++.....+.|.+..-...+.-.|+|.+.+...
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 35568999999999887 433 789999874321 1112222334566655544455679999998643
No 354
>PHA02982 hypothetical protein; Provisional
Probab=97.65 E-value=0.0028 Score=48.49 Aligned_cols=131 Identities=15% Similarity=0.261 Sum_probs=75.4
Q ss_pred CcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceee---------eCCceEEeeCCCCceEEEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLII---------HDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~L~i 148 (384)
..++....|++|.|.|..... ......|...+.-. +.....+.... ....|.... ....++|+|
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~----la~~~~~~~~iN~~~y~~~~~kd~y~~sv--~g~~STLTI 104 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFM----LAQEANGGTGINAFNYVPGPYKDKYALSV--SGNSSTFTM 104 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeE----EEeeecCcceeccccccCCccceeEEEEE--eccceeEEe
Confidence 344557789999999997543 45678999855321 11111111111 123344444 566789999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecC-ceEEEEEEecccCCCeEEEEeCCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG-QTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
.++..+..|-|+|++....+........+.|+..-.. ....++ ..-.+.|-+-....+-..|..+|.
T Consensus 105 kk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~-------~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 105 KKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDIL-------YVVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred ccCCcccCCceEEEEecCCCchheeheeeeEecceEE-------EEEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 9999999999999997433333443455555322111 111223 345688987543333237887664
No 355
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.64 E-value=0.00019 Score=50.80 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=43.1
Q ss_pred ecCceEEEEEEecc-cCCC-eEEEEeCCCcccccC-----------ceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 196 SEGQTVYLYCYANG-FPAP-TISWRRDNSAALSTG-----------GSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 196 ~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
.+++.++|.|.+.+ +|.. .+.|++++..+.... +.....+.|.+......+ ...|+|.+.+....
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 35678999999988 4543 899999986654321 122234467766555444 56799999986444
No 356
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.64 E-value=0.00056 Score=46.63 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=42.2
Q ss_pred ccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 86 IAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 86 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
.++.++|.|.+.+. | ...|+|++++....... .. .......++.|.... .|.+..-...+...|+|++
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~--~~-s~~~~~~~~Ty~~~S-------~L~v~~~~w~~~~~ytC~V 82 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVA--AS-TAPQKEEGSTFSTTS-------ELNVTQEDWKSGKTYTCKV 82 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCce--ee-cccEECCCCcEEEEE-------EEEEchHHhcCCCeEEEEE
Confidence 45679999999884 4 57899999876521110 00 011112233444433 4656544344556999999
Q ss_pred EEcc
Q psy16652 164 IISL 167 (384)
Q Consensus 164 ~~~~ 167 (384)
.+..
T Consensus 83 ~H~~ 86 (94)
T cd05847 83 THQG 86 (94)
T ss_pred EECC
Confidence 8543
No 357
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.63 E-value=0.031 Score=47.49 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=90.2
Q ss_pred eEEeecCceEEEEEEec--ccC-CCeEEEEeCCCccccc-----------------Ccee----------EeccEEEEcC
Q psy16652 192 SVIVSEGQTVYLYCYAN--GFP-APTISWRRDNSAALST-----------------GGSI----------YRGNILKIPN 241 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~--~~~-~~~v~W~~~~~~~~~~-----------------~~~~----------~~~~~l~i~~ 241 (384)
...+..|..+.|.|... |.. -.+..|...+-++.+. +... ...++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 34566799999999864 333 3478897655333211 1111 1246899999
Q ss_pred CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccC-CcEEEEEEEecc--CCCeEEEEECCEEecCCC
Q psy16652 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAY--PPPAIVWIKDGVQIMNNQ 318 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~ 318 (384)
+..+.+|-|+|++..+.... .....+.|...-.+.- ..++ ....+.|-+-.+ -++++.|..+|.......
T Consensus 353 a~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d~V~f~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~ 425 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKE-ECRHCFKVADHVFFKW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEI 425 (500)
T ss_pred EEEEcCCceEEEEecCcchh-hhhhheEeccEEEEEE------EeccCceEEEEEEEEecccCCceeEEEEccEEecCee
Confidence 99999999999999764433 2223333332222211 1122 234467988543 344799999986654322
Q ss_pred ceeee--eeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcce
Q psy16652 319 HYSVS--HFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSA 360 (384)
Q Consensus 319 ~~~~~--~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 360 (384)
...+. ...-......+.+.|.+-...| --.-.|..--..|..
T Consensus 426 ~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Ya 470 (500)
T PHA02914 426 ADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGYA 470 (500)
T ss_pred cCcccccccccccccceEEEEEecccCccccccceEEEecCCCce
Confidence 11111 0011112234557777766555 345678766665544
No 358
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.63 E-value=0.00032 Score=50.27 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=45.9
Q ss_pred CCCcccccCCcEEEEEEEeccC--CCeEEEEECC--EE---e---cC-----------CCceeeeeeeccCccccceEEE
Q psy16652 280 RPRQGQALQYDAILECHVEAYP--PPAIVWIKDG--VQ---I---MN-----------NQHYSVSHFATSDEFSDTSLRV 338 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~---~---~~-----------~~~~~~~~~~~~~~~~~~~l~i 338 (384)
+....+.+|+.++|.|...+.. ...+.||+.. +. + .. .+++.... . .......|+|
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~-~~~~~~~L~I 80 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--D-TSKSTVYLQL 80 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--E-ccCCEEEEEE
Confidence 4455678999999999986533 4569999832 11 1 00 01111110 0 0012246999
Q ss_pred eecCCCCCeEEEEEEEe
Q psy16652 339 ITIERRQFGQYACKAAN 355 (384)
Q Consensus 339 ~~~~~~d~G~Y~C~a~n 355 (384)
.+++.+|+|.|.|.+..
T Consensus 81 ~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 81 NSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCCHHHCEEEEEEEEc
Confidence 99999999999998875
No 359
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.62 E-value=0.0011 Score=45.29 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=41.4
Q ss_pred eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
..|+.++|.|.+.+. | ...++|++++...... ..........++.|.+.. .|.+ ...+...|+|+
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~---~~~~~~~~~~dgTy~~~s-------~L~~---~~~~~~~ysC~ 78 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG---VVSTELIPNGDWTYQILV-------MLET---TPSRGDTYTCV 78 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC---ceecceEECCCCcEEEEE-------EEEE---cCCCCCEEEEE
Confidence 468999999999884 4 5589999988763321 000111111222344433 3444 34456699999
Q ss_pred EEEcc
Q psy16652 163 VIISL 167 (384)
Q Consensus 163 ~~~~~ 167 (384)
+.+..
T Consensus 79 V~H~~ 83 (94)
T cd05766 79 VEHSS 83 (94)
T ss_pred EEeCC
Confidence 98654
No 360
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.60 E-value=0.016 Score=49.39 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC
Q psy16652 20 WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA 99 (384)
Q Consensus 20 ~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~ 99 (384)
|++-+.+...|.|.++...|+|.|..-+.......... ..........+|.+.+.+.+ +.+|++..-.|.+...
T Consensus 199 ~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e----~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnY 272 (490)
T PHA03271 199 WINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLD----KHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHF 272 (490)
T ss_pred eeccccceeeEEEEEeecccceEEEEEecCCCCCcccc----ceEEEEEEecCCCccccCCc--cccCCCceEEEEeeee
Confidence 67778899999999999999995543333333333221 11223345667777665544 4789999999999663
Q ss_pred -C--CccEEEEEeCCC
Q psy16652 100 -D--DYPVIWMKMDTA 112 (384)
Q Consensus 100 -~--~~~v~W~~~~~~ 112 (384)
| ...+.|++++..
T Consensus 273 YPP~SvrlrWf~nG~~ 288 (490)
T PHA03271 273 YPPGSVYVSWRQNGNI 288 (490)
T ss_pred cCCCceEEEEEeCCcc
Confidence 3 457999999865
No 361
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.60 E-value=0.00027 Score=43.63 Aligned_cols=59 Identities=25% Similarity=0.516 Sum_probs=39.8
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.++|.|+|.+. .+|.|++ |..+... .+.+|.+.....+-.|.|.|.+++ -+.+..+.|.
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------------~~~tlnLGs~~~DPRG~Y~C~~s~--~~~~~~LQVy 64 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV--------------SNTLLDLGSRINDPRGTYSCKESE--PNKEKTLQVY 64 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc--------------cccEEeccCcccCCCcceEecCcc--CCCcEEEEEE
Confidence 35789999662 5699999 5544322 245677777777788999999988 2334444444
No 362
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.54 E-value=0.0015 Score=44.36 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=41.5
Q ss_pred eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
..|+..+|.|.+.+. +...++|++++.... . .....-....+..|.+.. .|.+ ...+...|+|+
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~---~~~~~~~p~~d~tyq~~s-------~l~~---~~~~~~~ysC~ 78 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-K---VEQSDLSFSKDWTFYLLK-------STEF---TPTKGDEYACR 78 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-C---cEECcEEECCCCCEEEEE-------EEEE---CCCCCCeEEEE
Confidence 456778999999884 467899999887532 1 111111112233444433 3444 45677799999
Q ss_pred EEEcc
Q psy16652 163 VIISL 167 (384)
Q Consensus 163 ~~~~~ 167 (384)
+.+..
T Consensus 79 V~H~~ 83 (93)
T cd05770 79 VRHNS 83 (93)
T ss_pred EEECC
Confidence 98643
No 363
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.53 E-value=0.0015 Score=44.45 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=40.9
Q ss_pred eccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 85 DIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
..|+.++|.|.+.+. +...++|.+++...... . .........++.|.+.. .|.+. +.+...|+|.
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~-~--~~~~~~~~~Dgty~~~s-------~L~v~---~~~~~~ytC~ 79 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG-V--SETRYYPRQDLSFQKFS-------YLNFT---PEEGDIYSCI 79 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc-e--EEeeeEeCCCCcEEEEE-------EEEEE---CCCCCeEEEE
Confidence 346678999999884 36789999988653211 0 00111112234444433 45553 3455699999
Q ss_pred EEEcc
Q psy16652 163 VIISL 167 (384)
Q Consensus 163 ~~~~~ 167 (384)
+.+..
T Consensus 80 V~H~~ 84 (94)
T cd05767 80 VEHWG 84 (94)
T ss_pred EEeCC
Confidence 98543
No 364
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.53 E-value=0.00042 Score=42.53 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=35.3
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
.|..|+|+|...+. .+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+.
T Consensus 6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~---------------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGS---------------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred eccEEEEECCCCCC---CceEEeCCccCCCC---------------CceEEeeccC-CCCceEEEEeCCC
Confidence 47889999987632 39999998655432 2233444444 8899999999644
No 365
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.50 E-value=0.00025 Score=48.41 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=41.9
Q ss_pred eecCceEEEEEEeccc--CC-CeEEEEeCCCccc-------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 195 VSEGQTVYLYCYANGF--PA-PTISWRRDNSAAL-------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~--~~-~~v~W~~~~~~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
+..+..++|.|.+.++ |. ..|.|.+++..-. ..++.....+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3467889999999884 33 3799999876411 1112222334666665445555679999998654
No 366
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.43 E-value=0.00092 Score=41.34 Aligned_cols=50 Identities=24% Similarity=0.578 Sum_probs=37.8
Q ss_pred cCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 197 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
..+.+.|.|.+. .+|.|++ |..+... ...+|.+.....+..|.|.|.+++
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence 345899999652 4699999 5544332 256788889999999999999876
No 367
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.42 E-value=0.0006 Score=45.21 Aligned_cols=61 Identities=16% Similarity=0.371 Sum_probs=37.7
Q ss_pred cEEEEEEEeccCCC--eEEEEECCE-----EecC-------------CCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 290 DAILECHVEAYPPP--AIVWIKDGV-----QIMN-------------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 290 ~~~l~C~~~~~p~~--~v~W~~~~~-----~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
.+.|.|.+.....+ .+.|++... .+.. .+++.+... ......+|.|.+++.+|+|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~i~~~~~~D~G~Y 77 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKD---TSKNDVSLTISNLRVEDTGTY 77 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEec---CcCCEEEEEEcCCCHHHCEEE
Confidence 36799998764443 799988541 0110 112221111 112456799999999999999
Q ss_pred EEEE
Q psy16652 350 ACKA 353 (384)
Q Consensus 350 ~C~a 353 (384)
.|.+
T Consensus 78 ~C~v 81 (81)
T smart00406 78 YCAV 81 (81)
T ss_pred EEcC
Confidence 9963
No 368
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.41 E-value=0.00096 Score=45.55 Aligned_cols=62 Identities=15% Similarity=0.328 Sum_probs=38.9
Q ss_pred eecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 195 VSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
+..+..++|.|.+.+ +|.. .++|.++|..+... .......+.|.+..-. ....|+|.+.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 334677999999998 4543 78999998764322 1122223455554432 2345999999843
No 369
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.38 E-value=0.0014 Score=43.77 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=42.8
Q ss_pred eccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 85 DIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
..++.++|.|.+.+. | ...|.|++++........ ........++.|.+.. .|.+. ..+...|+|+
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~---~~~~~~~~dgty~~~s-------~l~v~---~~~~~~ysC~ 72 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVE---TTPPPPNSDGTYSVTS-------SLTVT---WNSGDEYSCR 72 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEE---EEEEEEETTSEEEEEE-------EEEEE---TTTTGGEEEE
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeee---ecccccccccceeeeE-------EEEec---CCCCCEEEEE
Confidence 348999999999873 4 568999998764221110 0001112344555544 46665 5555699999
Q ss_pred EEEccC
Q psy16652 163 VIISLN 168 (384)
Q Consensus 163 ~~~~~~ 168 (384)
+.+...
T Consensus 73 V~H~~l 78 (83)
T PF07654_consen 73 VTHESL 78 (83)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 986543
No 370
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.36 E-value=0.0079 Score=51.58 Aligned_cols=126 Identities=16% Similarity=0.152 Sum_probs=82.0
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEE
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWI 308 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~ 308 (384)
....|.|..++...+|.|+-..-+..+.. ..+.+++....+|.+.+.+. .+..|+.....|.+..+.++ .+.|+
T Consensus 180 p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf 257 (466)
T PHA03270 180 PTQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWF 257 (466)
T ss_pred CcceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 34579999999999999999977654432 34557777777888766443 46789999999999886655 69999
Q ss_pred ECCEEecCCCceeeeeeeccCc-cccceEEEeecCCC-CCeEEEEEEEeCCcce
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITIERR-QFGQYACKAANKYGSA 360 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~ 360 (384)
.||.++................ ...++|++...... ..-..+|.+.-..+..
T Consensus 258 ~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~v 311 (466)
T PHA03270 258 EGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSV 311 (466)
T ss_pred eCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCc
Confidence 9999886433333222222111 12233433332221 1236899998766554
No 371
>PHA02633 hypothetical protein; Provisional
Probab=97.34 E-value=0.00079 Score=40.46 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=36.1
Q ss_pred ccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
....|.|.++..+|+|.|.|..+|..-..+.++.|.|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 35568999999999999999999999889999999887765
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.32 E-value=0.00054 Score=42.08 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=33.0
Q ss_pred eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEE
Q psy16652 85 DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI 164 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 164 (384)
..|.+|+|+|.... ..+.|++++.... + ....+.+.+-. +++|.|+|.+.
T Consensus 5 isGTtVtlTCP~~~---~~i~W~~n~~~~~---------------g-----------~~~~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQ---------------G-----------SDEKYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EeccEEEEECCCCC---CCceEEeCCccCC---------------C-----------CCceEEeeccC-CCCceEEEEeC
Confidence 46999999998542 2399999875421 0 11124444444 88999999874
No 373
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.27 E-value=0.0028 Score=43.34 Aligned_cols=70 Identities=9% Similarity=0.185 Sum_probs=41.1
Q ss_pred ccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 86 IAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 86 ~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
.++.++|.|.+.+. ....|+|.+++.. ... .. . .......++.|.... .|.+..-.......|+|++
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~-~~-~-~~~~~~~dgty~~~s-------~L~v~~~~w~~~~~ytC~V 83 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSG-VK-T-YPAVLQSGGLYTASS-------QLTVPASEWKGKESFYCKV 83 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCC-cE-E-CCCEeCCCCCEEEEE-------EEEEeHHHcCCCCcEEEEE
Confidence 46779999999884 3678999998875 211 11 0 011111145555544 4665543322345899999
Q ss_pred EEc
Q psy16652 164 IIS 166 (384)
Q Consensus 164 ~~~ 166 (384)
.+.
T Consensus 84 ~H~ 86 (95)
T cd04985 84 EHP 86 (95)
T ss_pred EeC
Confidence 854
No 374
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.20 E-value=0.0041 Score=42.46 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=40.7
Q ss_pred CceEEEEEEe-cccCCCeEEEEeCCCccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 198 GQTVYLYCYA-NGFPAPTISWRRDNSAAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 198 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.....+.|.+ .|+|.++|+|+++..... ...+...-.+.|.+.....+|+-.|+|.+.|..-
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3467899998 678999999999722111 1111122334677766666666789999998653
No 375
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.17 E-value=0.0083 Score=52.20 Aligned_cols=125 Identities=18% Similarity=0.148 Sum_probs=78.7
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCC--CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEEE
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVG--RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWIK 309 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~ 309 (384)
..|.|..++..++|.|+-.+.+... ......+.+.+...|.+.+.+ ..+..|+.....|.+..+.++ .+.|+.
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4699999999999999988765332 223566777777788666543 346889999999999886655 699999
Q ss_pred CCEEecCCCcee-eeeeeccCccccceEEEeecCCCC--CeEEEEEEEeCCcceE
Q psy16652 310 DGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQ--FGQYACKAANKYGSAQ 361 (384)
Q Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d--~G~Y~C~a~n~~g~~~ 361 (384)
||.++....... ......+.....++|++......| .-..+|.+.-..+...
T Consensus 367 ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS 421 (566)
T PHA03269 367 NFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVS 421 (566)
T ss_pred CCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCch
Confidence 998887422111 111111111123344442222222 3456999987665543
No 376
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.17 E-value=0.015 Score=50.46 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=80.0
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC---eEEEEEC
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP---AIVWIKD 310 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~v~W~~~ 310 (384)
..|.|..++...+|.|+-...+..+. .....+.+....+|.+.+.+. .+..|+.....|.+..+.++ .+.|+.|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 35999999999999999887654332 224555666677887766443 46789999999999886655 6999999
Q ss_pred CEEecCCCc--eeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeCCcce
Q psy16652 311 GVQIMNNQH--YSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANKYGSA 360 (384)
Q Consensus 311 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~ 360 (384)
|.++..... ........+.....++|++..... +..-..+|.+.-..+..
T Consensus 276 g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v 328 (486)
T PHA03273 276 AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV 328 (486)
T ss_pred CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc
Confidence 998873222 111111112112234455544332 23447899998766654
No 377
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.16 E-value=0.0047 Score=42.03 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=44.6
Q ss_pred eeeccCcEEE-EEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 83 IKDIAQTADL-KCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 83 ~v~~g~~v~l-~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
.+.+|+.+.+ .|...+ .|.++|.|+.+..... . .......++.+.+.. .|.+...+..|.-.++
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~------~~~~~~~ngT~TV~S-------~~~l~p~r~d~G~~vt 77 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-E------SHSQEHPNGTTTVTS-------EYIWVPSRHANGHPLT 77 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-c------eeeecCCCCCEEEEE-------EEEEEeCHHHCCcEEE
Confidence 3678999999 999855 6888999997654321 0 000011122343333 5666555566666999
Q ss_pred EEEEEccC
Q psy16652 161 CEVIISLN 168 (384)
Q Consensus 161 C~~~~~~~ 168 (384)
|++.+...
T Consensus 78 C~V~H~al 85 (97)
T cd07704 78 CVVSHPAL 85 (97)
T ss_pred EEEeCccc
Confidence 99986543
No 378
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.04 E-value=0.0016 Score=46.49 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=48.9
Q ss_pred ccccCCcEEEEEEEeccC-----CCeEEEEECCEEecCCC--ceee-ee-----eeccCccccceEEEeecCCCCCeEEE
Q psy16652 284 GQALQYDAILECHVEAYP-----PPAIVWIKDGVQIMNNQ--HYSV-SH-----FATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p-----~~~v~W~~~~~~~~~~~--~~~~-~~-----~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
....++.+.|.|.+...+ ...+.|.++|..+-.-+ .... .. .-..-..++.+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 456678999999996522 22599999987763211 0000 00 00111123456777775544 79999
Q ss_pred EEEEeCCcceEEEEEEEEee
Q psy16652 351 CKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~ 370 (384)
|.+.......+..+.|..+.
T Consensus 102 CeVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYRV 121 (130)
T ss_dssp EEEEETTEEEEEEEEEEE--
T ss_pred EEEEecCCCceEEEEEEEEE
Confidence 99999999999999988744
No 379
>KOG1480|consensus
Probab=97.01 E-value=0.0002 Score=65.33 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=96.5
Q ss_pred CceEEeecCceEEEEEEecccCC----CeEEEEeCCCccccc-----CceeEeccEEEEcCCCCCCCe---EEEE--EEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPA----PTISWRRDNSAALST-----GGSIYRGNILKIPNITKTDRG---TYYC--VAQ 255 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~d~G---~Y~C--~~~ 255 (384)
+....+..|.++.|.|++...+. ..-.|..+....... .+.....-.+.|.....++.+ .|.| .+.
T Consensus 31 p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d~~cQc~a~ 110 (909)
T KOG1480|consen 31 PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPEDYWCQCVAW 110 (909)
T ss_pred CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccceeeeeeee
Confidence 34455678899999999865332 234565543322111 111112223444444333332 3665 555
Q ss_pred eCCCCceeeEEEEEEEecCe-EEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCcccc
Q psy16652 256 NGVGRGMKRNIAVEVEFAPV-ITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333 (384)
Q Consensus 256 ~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (384)
...|...+....+.+.+-.. +.-.+.-..+..+..+++.|.. .+.|...+.|++++..+..+.+.... ..
T Consensus 111 ~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~--------~d 182 (909)
T KOG1480|consen 111 SDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA--------SD 182 (909)
T ss_pred cCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhh--------hc
Confidence 55552222212222222111 2223344567777888888876 77888899999999888765444332 46
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
..+.+..++..|.|+|+|+|.|-.+...
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred CCccccchhhhhcccceeeeehhhcccc
Confidence 7799999999999999999999887654
No 380
>PHA02982 hypothetical protein; Provisional
Probab=96.96 E-value=0.01 Score=45.49 Aligned_cols=172 Identities=15% Similarity=0.230 Sum_probs=92.3
Q ss_pred EEeecCceEEEEEEecc-cCCCeEEEEeCCCccccc--------Cc---------------eeEeccEEEEcCCCCCCCe
Q psy16652 193 VIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALST--------GG---------------SIYRGNILKIPNITKTDRG 248 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~--------~~---------------~~~~~~~l~i~~~~~~d~G 248 (384)
+....++++.|.|.... ..-.+..|+.++.-.... .. .....++|+|..++.+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 44667999999999633 333478898855322210 00 0113468999999999999
Q ss_pred EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCcee--e--ee
Q psy16652 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS--V--SH 324 (384)
Q Consensus 249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~--~~ 324 (384)
-|+|++....+....-.-.+.|+....+-. .........+.|-+-..-.+-..|..+|.... +.+.. + ..
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVvtt-Gg~~sg~i~~gf 187 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFVGSKHGDVPRFIVAGIVTT-GGPMSGEIPKGF 187 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEEEeccCCCccEEEeeEEec-CCcccccccccc
Confidence 999999987666544455566633322211 00122345578988554333339988876422 22111 0 01
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEE-eCCcceEEEEEEEEee
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAA-NKYGSAQKEIELFDRE 370 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~ 370 (384)
..........++.+..--.++--.=.|..- +..+..+-.+++.-.+
T Consensus 188 n~~segy~y~~Ikin~s~~~~V~kp~CRy~~~~~yarEYpI~~~g~~ 234 (251)
T PHA02982 188 NQDSEGYRYNSIKINESVTDHIEKPYCRYWIDNDHAREFKIELGGDE 234 (251)
T ss_pred ccccCceEEEEEEEcccccccccccEEEEEcCCCceEEEeEeecccc
Confidence 111122233445544432333334456543 3444555556665433
No 381
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.96 E-value=0.0059 Score=41.29 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=44.3
Q ss_pred cccCCcEEEEEEEec-cCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCCc
Q psy16652 285 QALQYDAILECHVEA-YPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYG 358 (384)
Q Consensus 285 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g 358 (384)
+.+|..+++.|.+.+ +|. .++.|+++...+..... ...............+++... .+|.| .|+|.|.-..+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f-~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSF-LEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceeccccc-ccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 478999999999965 555 37999987766654421 110000001112355666664 66666 89999975544
No 382
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.95 E-value=0.011 Score=40.37 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=39.9
Q ss_pred ceEEEEEEe-cccCCCeEEEEeCCCccccc------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 199 QTVYLYCYA-NGFPAPTISWRRDNSAALST------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 199 ~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
....+.|.+ .+.|.++|+|+++....... ++...-.+.|.+.....+|+..|+|.+.|..-
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 367899987 56888999999873221111 11122234677766666677789999999643
No 383
>PHA02633 hypothetical protein; Provisional
Probab=96.93 E-value=0.0028 Score=38.18 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.6
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 182 (384)
..|+|.++..+|+|.|.|.+++ ..-....++.|.|...
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn-~t~c~~~si~l~V~~~ 55 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKN-ETYSDMMKFDLCICLR 55 (63)
T ss_pred ccEEEeccccccCcEEEEEEcC-CCeeEEEEEEEEEeec
Confidence 3699999999999999999973 3334555667776544
No 384
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.86 E-value=0.011 Score=41.40 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=43.1
Q ss_pred cccccCCcEEEEEEEeccCCC---eEEEEECCE-E--e---c---------CCCceeeeeeeccCccccceEEEeecCCC
Q psy16652 283 QGQALQYDAILECHVEAYPPP---AIVWIKDGV-Q--I---M---------NNQHYSVSHFATSDEFSDTSLRVITIERR 344 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~---~v~W~~~~~-~--~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 344 (384)
.-+..|+.++|+|.++|.-.. .+.|+|... . + . ...++..+. ......-.|.|.+++.+
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a~ 84 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRAN 84 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCHH
Confidence 345678889999999774433 588987321 1 0 0 111222111 11223456999999999
Q ss_pred CCeEEEEEEE
Q psy16652 345 QFGQYACKAA 354 (384)
Q Consensus 345 d~G~Y~C~a~ 354 (384)
|.+.|.|..+
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999764
No 385
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.69 E-value=0.003 Score=45.20 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=47.0
Q ss_pred eccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCce-e--eeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 85 DIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSL-I--IHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
.=+++|.|+|.+..- +...|.|..++.. +....+... . ....+..+ .+...++.+|.+.....- .
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-----If~~dg~~~~~~~~~f~sa~i-~~l~kG~aSL~~~~~~a~-~ 97 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-----IFIFDGTNNKSTSDNFPSAKI-SELLKGNASLKMDKSDAV-E 97 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-----EEEEETTTTEEEEGGGTT-BE-GGGGGTB--EEEEHHHHH--
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeE-----EEEEcCccceecccCccccch-hHhhCCCEEEEEcchhcc-c
Confidence 457899999998652 2346999997753 222222111 1 12234444 444567778998875554 8
Q ss_pred eeEEEEEEEccCcceeeeEEEEE
Q psy16652 157 GIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
|.|+|.+.. ........+.|..
T Consensus 98 GnYTCeVt~-~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 98 GNYTCEVTE-LSREGETTIELKY 119 (130)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEE
T ss_pred cceEEEEEe-cCCCceEEEEEEE
Confidence 999999973 3334555555554
No 386
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.62 E-value=0.012 Score=39.79 Aligned_cols=63 Identities=17% Similarity=0.215 Sum_probs=40.4
Q ss_pred eecCceEEEEEEecc-cCC--CeEEEEeCCCcccccCce--------eEeccEEEEcCCCCCCCe-EEEEEEEeCC
Q psy16652 195 VSEGQTVYLYCYANG-FPA--PTISWRRDNSAALSTGGS--------IYRGNILKIPNITKTDRG-TYYCVAQNGV 258 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~G-~Y~C~~~~~~ 258 (384)
+.+|..+++.|.+.+ +|. ..+.|+++...+...... ......+++... ++|.| .|+|.|.-..
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 478999999999965 555 479999866543322111 112245666554 66666 7999998543
No 387
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.41 E-value=0.25 Score=42.28 Aligned_cols=134 Identities=16% Similarity=0.276 Sum_probs=79.0
Q ss_pred eeeeccCcEEEEEEeec---CCCccEEEEEeCCCCCCcc-ccee--ccCceeeeCCceEEeeC----CCCceEEEEEeec
Q psy16652 82 QIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEP-LPIS--MSGSLIIHDSRFQLTTD----PETSTYILSIKEI 151 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~~ 151 (384)
..+..|..|.|.|.+.- .......|+-.+-+..+-. .... .-.+....+..|.+... .+...++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 34677999999999854 3456789998776543211 0000 01112234455655543 2456779999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEecc--cCCCeEEEEeCCCc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANG--FPAPTISWRRDNSA 223 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~--~~~~~v~W~~~~~~ 223 (384)
+.+.+|-|+|++... .........|.|...... ....+|. .-...|-+.. ..++.+.|..+|..
T Consensus 354 ~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f-------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~ 420 (500)
T PHA02914 354 HINNAGCYEAQAFMG-KFKEECRHCFKVADHVFF-------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVS 420 (500)
T ss_pred EEEcCCceEEEEecC-cchhhhhhheEeccEEEE-------EEEeccCceEEEEEEEEecccCCceeEEEEccEE
Confidence 999999999999632 222233333444322111 1123433 4567888744 34567999987743
No 388
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=96.30 E-value=0.39 Score=37.77 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=67.4
Q ss_pred eEEEEeCCCcccccCc----------eeEeccEEEE-cCCCCCCCeEEEEEEEeCCCCceee----EEEEEEEecCeEEe
Q psy16652 214 TISWRRDNSAALSTGG----------SIYRGNILKI-PNITKTDRGTYYCVAQNGVGRGMKR----NIAVEVEFAPVITI 278 (384)
Q Consensus 214 ~v~W~~~~~~~~~~~~----------~~~~~~~l~i-~~~~~~d~G~Y~C~~~~~~~~~~~~----~~~l~v~~~p~~~~ 278 (384)
.+.|+.++..+..... .....++|.+ .+...+..-..+|.+.......... ...-.|..+|.+++
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv 87 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV 87 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence 6889998876653211 1122345666 2333444457899999755433222 22334445565554
Q ss_pred cCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC--CCCe--EEEEE
Q psy16652 279 NRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER--RQFG--QYACK 352 (384)
Q Consensus 279 ~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G--~Y~C~ 352 (384)
. . +.-...|.+.--|. ..+.|..++..............-. ..-....|.+... ...| +|+|.
T Consensus 88 ~-----F---~~g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~---~~pglvnirs~~pls~~~~~~~YtC~ 156 (211)
T PF02124_consen 88 R-----F---EDGYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCA---EHPGLVNIRSRRPLSDEDGPVEYTCR 156 (211)
T ss_pred E-----e---cCCEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCccc---CCcceeEeecccCCCccCCceeEEEE
Confidence 1 1 22235688766553 5899998887643332222211100 0112233433331 2235 89999
Q ss_pred EEeC
Q psy16652 353 AANK 356 (384)
Q Consensus 353 a~n~ 356 (384)
+...
T Consensus 157 l~GY 160 (211)
T PF02124_consen 157 LIGY 160 (211)
T ss_pred EeeC
Confidence 8753
No 389
>PHA03042 CD47-like protein; Provisional
Probab=96.25 E-value=0.031 Score=45.01 Aligned_cols=74 Identities=20% Similarity=0.336 Sum_probs=49.4
Q ss_pred ccccCCcEEEEEEEecc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 284 GQALQYDAILECHVEAY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
....++++.+.|.+..- ....+.|.+++..+-..+.. ..++|.+.... .-.|+|+|.|.+...
T Consensus 27 yT~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~-~l~GNYTCEv~~l~n 94 (286)
T PHA03042 27 YTTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSK-NLSGNYTCEAINKFN 94 (286)
T ss_pred EEecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccc-cCCCceeEEEeeccc
Confidence 34567889999999762 23369999999877433221 12445554433 337999999999877
Q ss_pred ceEEEEEEEEe
Q psy16652 359 SAQKEIELFDR 369 (384)
Q Consensus 359 ~~~~~~~l~v~ 369 (384)
..+..++|.-.
T Consensus 95 ~gk~~IeLk~~ 105 (286)
T PHA03042 95 KIKNTIELQYV 105 (286)
T ss_pred CccEEEEEEEE
Confidence 77777776544
No 390
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.82 E-value=0.052 Score=43.69 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=38.8
Q ss_pred CCCeEEEEEC-CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 301 PPPAIVWIKD-GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 301 p~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
..|.+.|... |..+..+....+. ..+.|.+.+....++|.|+|..+...
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT--------~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNIT--------ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEc--------cCceEEeeccccccCCceEEEEEEEe
Confidence 4678999985 5556655566665 46779999999999999999998765
No 391
>PHA03042 CD47-like protein; Provisional
Probab=95.78 E-value=0.059 Score=43.47 Aligned_cols=71 Identities=23% Similarity=0.371 Sum_probs=47.0
Q ss_pred eecCceEEEEEEeccc-----CCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 195 VSEGQTVYLYCYANGF-----PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
..-++++.+.|.++.. ....+.|..++..+...++. +..+|.+... ..-.|+|+|+|.+..... ...+.+.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~g-k~~IeLk 103 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKI-KNTIELQ 103 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCc-cEEEEEE
Confidence 4568899999998652 23469999999877665554 3345665443 334799999999855543 3334443
No 392
>KOG4597|consensus
Probab=95.56 E-value=0.019 Score=49.91 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCCcccccCCcEEEEEEEeccCCCeEEEEE---CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 280 RPRQGQALQYDAILECHVEAYPPPAIVWIK---DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
+....+..+++..++|-+.|.+.+.|.|.+ |+..+.....-. ..+....+...|.|-+....|+|.|+|.|.|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~---~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg 279 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQT---VENPVVTSTCQLVICNEWQADAGWYTCSARCG 279 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccc---cCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence 344567778999999999999999999965 433332111100 01111123567899999999999999999999
Q ss_pred CcceEEEEEEEEe
Q psy16652 357 YGSAQKEIELFDR 369 (384)
Q Consensus 357 ~g~~~~~~~l~v~ 369 (384)
.|...+.+.+.+.
T Consensus 280 ~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 280 AGFLRRDVPCSSV 292 (560)
T ss_pred cceeeccceeeee
Confidence 9999998887643
No 393
>PHA03189 UL14 tegument protein; Provisional
Probab=95.39 E-value=0.22 Score=40.90 Aligned_cols=96 Identities=8% Similarity=0.215 Sum_probs=54.4
Q ss_pred CcceeeeccCcEEEEEEeecC--CCc--cEEEEEeCCCCCCcccceeccCc-ee-------eeCCceEEeeCCCCceEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDY--PVIWMKMDTAKKMEPLPISMSGS-LI-------IHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~--~v~W~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~L 146 (384)
+.+..+..|+.|++.|.+... |.. .+...... .....+.++...+ .. ..+.++++..-......+|
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~--e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltL 136 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSP--ERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTL 136 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeecc--ccceEEEEEcccCCEeccccceecccceeeeecccceeEEEE
Confidence 556778999999999998554 332 33444331 1122333333222 22 2334555544323344556
Q ss_pred EEeecCCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 177 (384)
.+ ++..+-+|.|.|...|...+.....+.|
T Consensus 137 tF-~v~t~taG~Y~CvLrN~tHglv~~rf~i 166 (348)
T PHA03189 137 TF-RVSTSTAGMYECVLRNETHGLVLQRFVI 166 (348)
T ss_pred EE-EEEecccceEEEEeccccceeeeEEeee
Confidence 65 4556778999999987766655444433
No 394
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=95.37 E-value=0.5 Score=31.72 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=51.9
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+.+.|+..+|..|+++.+.|...=..+..+.|.-.-. +..+.. ..+-..+.+.+++.
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~--------------------k~~~~~--g~~W~~f~LsnV~~ 62 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS--------------------KTELDS--GPQWKAFQLSNVTE 62 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE--------------------EEEEEE--ETTEEEEEEEEE-S
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC--------------------CcccCC--CCcEEEEEEEcccc
Confidence 46778899999999999999997433333444442110 000111 12233577888886
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
| ..-.|.+. -.+........|+|+.+|.
T Consensus 63 -d-s~~~C~~~-C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 63 -D-SSPLCFFN-CSGEQSSASANITVYKPPE 90 (91)
T ss_dssp -C-EEEEEEEE-ETTEEEEEEEEEEEEB--S
T ss_pred -C-CeEEEEEE-cCCeEEEeEEeeEEeCCCC
Confidence 5 46679885 4556677888899988764
No 395
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.32 E-value=0.014 Score=46.75 Aligned_cols=49 Identities=8% Similarity=-0.076 Sum_probs=38.5
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeec
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMS 50 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~ 50 (384)
++|+|.|.--.-+.+.+.....-...+.|.+.+..+.++|.|+|.+.-.
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 5789999976655555554444567788999999999999999997763
No 396
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.27 E-value=0.072 Score=36.39 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=29.4
Q ss_pred ccceEEEeecCCCCCeEEEEEEEeCCcceEE-EEEEEE
Q psy16652 332 SDTSLRVITIERRQFGQYACKAANKYGSAQK-EIELFD 368 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v 368 (384)
.+..|.|+.++..|+|.|.-.+++..|.... .+.|.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 5788999999999999999999999998853 355554
No 397
>KOG0613|consensus
Probab=94.82 E-value=0.084 Score=52.07 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=93.5
Q ss_pred EEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCc------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGG------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
+....+..+.+.|...+...+. +.|+++........+ .......+.+..+...+.+.|.|.+.|..+......
T Consensus 344 v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~ 423 (1205)
T KOG0613|consen 344 VTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIA 423 (1205)
T ss_pred eccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccc
Confidence 3455677889999988887775 999987654433321 112345677888888999999999999877653333
Q ss_pred EEEEEEec-----CeEEecCCCcccccC--CcEEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 266 IAVEVEFA-----PVITINRPRQGQALQ--YDAILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 266 ~~l~v~~~-----p~~~~~~~~~~~~~g--~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
..+..... +.+.. ........+ +.+.+.|...+.+.+ .++|++++....... ..+. .....+|
T Consensus 424 ~~~vs~~~~gt~~~~~kk-~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s-~~l~------r~~~tsl 495 (1205)
T KOG0613|consen 424 ESTVSEEMPGTQPPKFKK-DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRS-VTLT------RDVLTSL 495 (1205)
T ss_pred hhhcccccCCCCCccccc-cccccccccCCcccccccCCCCccccceeEeeccCCccccccc-cccc------ccchhhh
Confidence 32222221 11211 112223333 778888999887755 566666654432111 1110 0123456
Q ss_pred EEeecCCCCCeEEEEEEEeCCc
Q psy16652 337 RVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.+......|.|.|.-......|
T Consensus 496 Llk~~~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 496 LLKVASLSDGAQYTRALRTLQG 517 (1205)
T ss_pred eeeccCCCccchhhhhhhccCC
Confidence 7777778888888544444333
No 398
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.61 E-value=0.48 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=26.8
Q ss_pred cceEEEeecCCCCCeEEEEEE-EeCCcceEEEEEEEEe
Q psy16652 333 DTSLRVITIERRQFGQYACKA-ANKYGSAQKEIELFDR 369 (384)
Q Consensus 333 ~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v~ 369 (384)
...+.......+|+|.+.|.| .+..-.....+.|.|.
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v~ 79 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILVL 79 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEcC
Confidence 334556677889999999999 6666666666666653
No 399
>KOG4597|consensus
Probab=94.36 E-value=0.089 Score=45.94 Aligned_cols=93 Identities=19% Similarity=0.112 Sum_probs=59.6
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQ 152 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~ 152 (384)
.+..-+....+..|+++.++|-+.|.+...|+|.+.-.. ....+...+ ....+ .......|+|-+..
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~an---r~~vv~~~n---------q~~e~p~vtstcql~ic~ew 265 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFAN---RENVVMRPN---------QTVENPVVTSTCQLVICNEW 265 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhcc---ccceeecCc---------cccCCcceeeeeeEEEcchh
Confidence 344445556688999999999999999999999984321 001111011 11111 13445679999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
..|+|.|+|.+.+.. +...+.+.+.+
T Consensus 266 q~~a~w~tCs~rcg~-g~~~rdv~c~s 291 (560)
T KOG4597|consen 266 QADAGWYTCSARCGA-GFLRRDVPCSS 291 (560)
T ss_pred hcCCCceeecccccc-ceeeccceeee
Confidence 999999999998544 33444444443
No 400
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.89 E-value=4.7 Score=36.36 Aligned_cols=75 Identities=19% Similarity=0.123 Sum_probs=48.9
Q ss_pred ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE---------ecCCC------------cccccCCcEE
Q psy16652 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT---------INRPR------------QGQALQYDAI 292 (384)
Q Consensus 234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~---------~~~~~------------~~~~~g~~~~ 292 (384)
.+.|.|.+++.+++|.|+-...++.+ .....+.|.|+.++... +.|.. .-..+|+++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 46799999999999999999988666 44566677777622211 11111 1345788888
Q ss_pred EEEEEecc--C---CCeEEEEE
Q psy16652 293 LECHVEAY--P---PPAIVWIK 309 (384)
Q Consensus 293 l~C~~~~~--p---~~~v~W~~ 309 (384)
+.-..... . ..++.|++
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEE
Confidence 87665331 1 22799987
No 401
>PHA03283 envelope glycoprotein E; Provisional
Probab=93.49 E-value=5.6 Score=35.92 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=47.6
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc--------cC------------CCceEEeecCceEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS--------DN------------STRSVIVSEGQTVY 202 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~--------~~------------~~~~~~~~~g~~~~ 202 (384)
...|.|.+++.+++|.|+-..+++.+ .....+.|.|..++... .. .-......+|+++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 35799999999999999999875443 44555566665521111 00 11234467899888
Q ss_pred EEEEec--c-cC--CCeEEEEeC
Q psy16652 203 LYCYAN--G-FP--APTISWRRD 220 (384)
Q Consensus 203 l~C~~~--~-~~--~~~v~W~~~ 220 (384)
+.-... . .+ ...+.|+..
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 765542 2 12 236899764
No 402
>PHA03282 envelope glycoprotein E; Provisional
Probab=93.40 E-value=5.4 Score=35.43 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
.|.+.+...+++|.|.|++..+.
T Consensus 334 dL~F~nAp~saSGLYVfVl~yNG 356 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVNG 356 (540)
T ss_pred ceEecCCCcccCceEEEEEEECC
Confidence 79999999999999999998643
No 403
>KOG1026|consensus
Probab=93.32 E-value=0.16 Score=48.02 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=94.2
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
...+..|..+++.|...+.+.+...|+..+........... ......+. .+.|.+.|..+.. ...+.+.
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~~-~~~v~~~ 271 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVARS-NPSILLV 271 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeee--------chhhHHHHhhhhc-CceeeeE
Confidence 34577899999999999999999999987765443222111 01111111 1789888877764 4556666
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEE---eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHV---EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
+..++........... .-.|.. .+.|.+...|..++..+........+... ...-+.....+..+.
T Consensus 272 ~~~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~-----~~~C~~~~~~~h~~~ 340 (774)
T KOG1026|consen 272 VDLPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSG-----KEQCLPWNDPPHSHN 340 (774)
T ss_pred EecccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceEeccccccccc-----CcCCcccCcCccccc
Confidence 6655543332222111 223544 35666788999988665333222111100 001222233356678
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|+|.+.|..|.........+..-|
T Consensus 341 ~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 341 GNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred CcceeeecccCccccccCcCccccCC
Confidence 99999999999988777666665554
No 404
>KOG0613|consensus
Probab=93.29 E-value=0.39 Score=47.68 Aligned_cols=170 Identities=9% Similarity=-0.053 Sum_probs=102.4
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe-
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF- 272 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~- 272 (384)
....+....|.|...+...+.+.|+.+....... ...+.+..+.+......+.|+|...+..+... ..+.-.+..
T Consensus 240 ~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~-~~v~~~~~i~ 315 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDR-FKVTEEAPIG 315 (1205)
T ss_pred cccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccc-eeeeEEeecc
Confidence 4556777888888766556666665543322211 22344566667777777888888887666542 222222221
Q ss_pred ---------------cCeEEe---cCCCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCcccc
Q psy16652 273 ---------------APVITI---NRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSD 333 (384)
Q Consensus 273 ---------------~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (384)
+|...+ ......+..+..+++.|...+...+. +.|++++..........+... .....
T Consensus 316 ~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~ts 392 (1205)
T KOG0613|consen 316 KGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPV---GTVTS 392 (1205)
T ss_pred ccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccccccccccccccc---ccccC
Confidence 111100 01112334456788999999988885 999998876655443222211 11245
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
..+.|..+...+.+.|.|.|.|..|.....-...+..
T Consensus 393 ~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~ 429 (1205)
T KOG0613|consen 393 HTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSE 429 (1205)
T ss_pred cchhhhhcCcccccccccceeccCCcccccchhhccc
Confidence 6688999999999999999999999776544333333
No 405
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.07 E-value=6 Score=35.00 Aligned_cols=77 Identities=18% Similarity=0.095 Sum_probs=47.9
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec-----CCccc--c-----------CCCceEEeecCceEEEEE
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR-----PPIIS--D-----------NSTRSVIVSEGQTVYLYC 205 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~~~~~--~-----------~~~~~~~~~~g~~~~l~C 205 (384)
..|.|.+++.+++|.|+-..+++.+......+.|.|.. +|... . .........+|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 46999999999999999998755555555566666731 11111 0 112334467899887665
Q ss_pred Eec-----ccCCCeEEEEeC
Q psy16652 206 YAN-----GFPAPTISWRRD 220 (384)
Q Consensus 206 ~~~-----~~~~~~v~W~~~ 220 (384)
... +.-...+.|+..
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEeecccCCCceEEEEEEEe
Confidence 543 111236889763
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.06 E-value=0.51 Score=31.68 Aligned_cols=66 Identities=18% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCCcccccCCcEEEEEEEecc-----CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 280 RPRQGQALQYDAILECHVEAY-----PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
++...+..|+.+++.|..... ....+.|..++..++......+.. ..+.+++.+......-.|.|.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~-------~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIND-------TVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEEST-------TEEEEEESS--SSEEEEEEEE
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCC-------eEEEEEEccCCCCCceEEEEE
Confidence 445567889999999998432 344799999998666554333321 235566666555444456665
No 407
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.06 E-value=0.61 Score=39.66 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=23.6
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEEC
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKD 310 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~ 310 (384)
..+|.+.+.... ..+ .++|.|.+.|..+. .+.|.++
T Consensus 201 ~vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 201 PVTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 346666553331 122 57999999995444 7899999
No 408
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.86 E-value=1.6 Score=28.62 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 212 APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 212 ~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+.+.|+..+.... .....+.+.....+|+|.+.|.|...
T Consensus 26 ~~~~~l~~~~~k~~------~~~~~~~~~~~~~~d~G~w~C~a~~~ 65 (80)
T PF05790_consen 26 KPSLFLENPGKKSL------ETKKLVSTFTPTTEDSGTWVCTASDN 65 (80)
T ss_dssp CEEEEEECSSCEEE------EESSEEEEESBTCGGSEEEEEEEEEC
T ss_pred ChhheeeccCcccc------ccceEEEEecCCCCCCEEEEEEEcCC
Confidence 34677776554332 23445677788889999999999643
No 409
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=92.66 E-value=0.26 Score=44.11 Aligned_cols=96 Identities=13% Similarity=0.059 Sum_probs=15.7
Q ss_pred CCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhh-hc-ccCCCC-----------eee-eCcceeeec
Q psy16652 21 DPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISL-AS-SQRTPT-----------ISY-ISQEQIKDI 86 (384)
Q Consensus 21 ~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~-~~-~~~~p~-----------~~~-~~~~~~v~~ 86 (384)
.+...+.+.|.|.+++..|+|.|+...............++..... .. ...+|. +.+ .....+..+
T Consensus 82 ~~~~~~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~ 161 (439)
T PF02480_consen 82 PRLTFNKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSP 161 (439)
T ss_dssp ----------------------------------------------------------------SEEEEEE--SEEE--T
T ss_pred cceeecCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecC
Confidence 3444566789999999999999999987543222222222221111 11 111221 111 123344668
Q ss_pred cCcEEEEEEeecC----C--CccEEEEEeCCCCCCc
Q psy16652 87 AQTADLKCSVQYA----D--DYPVIWMKMDTAKKME 116 (384)
Q Consensus 87 g~~v~l~C~~~~~----~--~~~v~W~~~~~~~~~~ 116 (384)
|+++.+.-..... . ...+.|++..-.....
T Consensus 162 Gdtf~~~v~l~~~~~d~~~f~~~i~W~~~~~~~~C~ 197 (439)
T PF02480_consen 162 GDTFHLSVHLQSEAHDDPPFSLEIDWYYMPTDPSCA 197 (439)
T ss_dssp T--EE---EEEEEESSS--EEEEEEEEEE---TT-S
T ss_pred CCcEEEeEEEEeccCCCCCeeEEEEEEEecCCCCCc
Confidence 9988887665331 2 2368999877544333
No 410
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=92.58 E-value=1.1 Score=30.04 Aligned_cols=69 Identities=12% Similarity=0.382 Sum_probs=43.0
Q ss_pred eeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+.++..++..|++++..|..... ....+.|..++.. .++.+|....+ ..+.+++.++
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~---------------iP~~qy~~in~---~~SsVT~~~~ 69 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEK---------------IPGSQYRVIND---TVSSVTLPNL 69 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCE---------------STCGCEEEEST---TEEEEEESS-
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEE---------------CChhHcceeCC---eEEEEEEccC
Confidence 34667778999999999998643 3457889886653 34455554442 2356777777
Q ss_pred CCCCCeeEEEEE
Q psy16652 152 QETDAGIYKCEV 163 (384)
Q Consensus 152 ~~~d~G~Y~C~~ 163 (384)
....+-.|-|..
T Consensus 70 ~~~~~~L~cC~l 81 (89)
T PF06328_consen 70 NPTGATLFCCKL 81 (89)
T ss_dssp -SSEEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 666655677764
No 411
>PHA03286 envelope glycoprotein E; Provisional
Probab=92.33 E-value=4.3 Score=35.82 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec-----CeEE--ecCC------------CcccccCCcEEEE
Q psy16652 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA-----PVIT--INRP------------RQGQALQYDAILE 294 (384)
Q Consensus 234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----p~~~--~~~~------------~~~~~~g~~~~l~ 294 (384)
.+.|.|.+++.+++|.|+-...|+.+......+.+.|... |... +.|+ ..-..+|+++.+.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vS 205 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDAS 205 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEE
Confidence 4579999999999999999999877766566677777422 2222 1111 1234578888777
Q ss_pred EEEe-c----cCCCeEEEEE
Q psy16652 295 CHVE-A----YPPPAIVWIK 309 (384)
Q Consensus 295 C~~~-~----~p~~~v~W~~ 309 (384)
-... . ....++.|++
T Consensus 206 v~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 206 VTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEeecccCCCceEEEEEEE
Confidence 6654 1 2233799987
No 412
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=91.91 E-value=0.87 Score=30.53 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=41.7
Q ss_pred cEEEEEEE-eccCCCeEEEEEC--CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 290 DAILECHV-EAYPPPAIVWIKD--GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 290 ~~~l~C~~-~~~p~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
-+...|.+ .|.|++.|.|.-+ |.. ........++...-.+.+.+-.....|.-..+|.+....-+....+.|
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 34567995 7889999999742 211 000000111111123445556666667778999999876555555555
Q ss_pred E
Q psy16652 367 F 367 (384)
Q Consensus 367 ~ 367 (384)
.
T Consensus 97 ~ 97 (98)
T cd05890 97 N 97 (98)
T ss_pred c
Confidence 4
No 413
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.19 E-value=0.41 Score=42.92 Aligned_cols=77 Identities=25% Similarity=0.184 Sum_probs=12.5
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc-------------------ccCCCceEEeecCceEEEE
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII-------------------SDNSTRSVIVSEGQTVYLY 204 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~g~~~~l~ 204 (384)
..|.|.+++.+|+|.|+-..++..+......+.|.|..+... ...........+|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 469999999999999999987554444444555655432111 0011233456789988776
Q ss_pred EEec----ccCC--CeEEEEeC
Q psy16652 205 CYAN----GFPA--PTISWRRD 220 (384)
Q Consensus 205 C~~~----~~~~--~~v~W~~~ 220 (384)
-... ...+ ..+.|+.-
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEEe
Confidence 6542 2111 26899764
No 414
>PHA03281 envelope glycoprotein E; Provisional
Probab=90.03 E-value=9.5 Score=34.67 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=48.1
Q ss_pred ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE-----ecCCC------------cccccCCcEEEEEE
Q psy16652 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT-----INRPR------------QGQALQYDAILECH 296 (384)
Q Consensus 234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~-----~~~~~------------~~~~~g~~~~l~C~ 296 (384)
.+.|.|.+++.+++|.|+-......|......+.|.|+..+.-. +.+.. .-..+|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 45899999999999999998886656544446667776533111 11111 12356787777766
Q ss_pred Eecc--C---CCeEEEEE
Q psy16652 297 VEAY--P---PPAIVWIK 309 (384)
Q Consensus 297 ~~~~--p---~~~v~W~~ 309 (384)
.... . ..++.|++
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 5321 2 23799987
No 415
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=90.01 E-value=18 Score=34.45 Aligned_cols=203 Identities=14% Similarity=0.202 Sum_probs=110.5
Q ss_pred CCCCCeeEEEEEEEccCc-----ceeeeEEEEEecC---Cc-ccc-CCCceEEeecCceEEEEEEecccCCCeEE-EE-e
Q psy16652 152 QETDAGIYKCEVIISLNN-----KVSAEVELIVRRP---PI-ISD-NSTRSVIVSEGQTVYLYCYANGFPAPTIS-WR-R 219 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~---~~-~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-W~-~ 219 (384)
+++.+|.|.-.+...... .....+...+... |. +.. ..+....+..|+++.+.+.+.+.....+. |. +
T Consensus 345 ~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ 424 (667)
T PRK14081 345 KPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTNLRYSFIIKK 424 (667)
T ss_pred eeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCeEEEEEEEEE
Confidence 456789998888743221 1233445555543 21 111 11223346679999999999764444433 33 3
Q ss_pred CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeC--CCC---ceeeEEEEEEEe-cCe-EE--ecCCCcccccCCc
Q psy16652 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG--VGR---GMKRNIAVEVEF-APV-IT--INRPRQGQALQYD 290 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~---~~~~~~~l~v~~-~p~-~~--~~~~~~~~~~g~~ 290 (384)
+|..+.. .....+..+.+. +.-+|.|+-.+.-. ... .....+.+.|.. .|. +. +.+.......|+.
T Consensus 425 ng~~ve~--~~Y~~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~ 499 (667)
T PRK14081 425 DGKEEEK--IDYGKNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDD 499 (667)
T ss_pred CCEEEEE--eecccccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCE
Confidence 4433321 111223334443 35689999877632 211 236677888875 554 22 3455667889999
Q ss_pred EEEEEEEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE--eCCcc----eEE
Q psy16652 291 AILECHVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA--NKYGS----AQK 362 (384)
Q Consensus 291 ~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~----~~~ 362 (384)
+++.|.+.+.-.. .+.-+.||..+...+- .....+++. +.-+|.|+-.+. |.... ...
T Consensus 500 i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~Y-----------s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k 565 (667)
T PRK14081 500 IEIEVIIQNTKDVLIKYILKINGHKVEETDY-----------IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKK 565 (667)
T ss_pred EEEEEEEeCCCeEEEEEEEEECCEEEEEeec-----------cccceEEEe---ecCCceEEEEEEEcccccccccccce
Confidence 9999999885444 3444556665532221 123334444 344688875544 43332 234
Q ss_pred EEEEEEeeeec
Q psy16652 363 EIELFDRETQT 373 (384)
Q Consensus 363 ~~~l~v~~~~~ 373 (384)
.+.+.|.++.|
T Consensus 566 ~v~~~V~e~~p 576 (667)
T PRK14081 566 EVKFYVREALP 576 (667)
T ss_pred EEEEEEcCCCC
Confidence 56667776543
No 416
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=89.92 E-value=4.4 Score=27.27 Aligned_cols=81 Identities=6% Similarity=0.070 Sum_probs=48.4
Q ss_pred EecCCCcccccCCcEEEEEEEeccCCC-eEEEEEC--CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 277 TINRPRQGQALQYDAILECHVEAYPPP-AIVWIKD--GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 277 ~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
.+.|+...+..|+++.+.|..+- +.| .+.|.-. ...+..+. .=..+.+.+++. | ..-.|.+
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~-------------~W~~f~LsnV~~-d-s~~~C~~ 70 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGP-------------QWKAFQLSNVTE-D-SSPLCFF 70 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEET-------------TEEEEEEEEE-S-C-EEEEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCC-------------cEEEEEEEcccc-C-CeEEEEE
Confidence 34556667889999999999864 333 4454211 11111111 112356777775 4 5778999
Q ss_pred EeCCcceEEEEEEEEeeeec
Q psy16652 354 ANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v~~~~~ 373 (384)
.-...+..+++.|.|..+|.
T Consensus 71 ~C~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 71 NCSGEQSSASANITVYKPPE 90 (91)
T ss_dssp EETTEEEEEEEEEEEEB--S
T ss_pred EcCCeEEEeEEeeEEeCCCC
Confidence 87766778888999988764
No 417
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=89.89 E-value=1.6 Score=37.28 Aligned_cols=21 Identities=19% Similarity=0.713 Sum_probs=17.0
Q ss_pred eEEEEEEecc-cCCC-eEEEEeC
Q psy16652 200 TVYLYCYANG-FPAP-TISWRRD 220 (384)
Q Consensus 200 ~~~l~C~~~~-~~~~-~v~W~~~ 220 (384)
.++|+|.+.| +|.. .++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 4799999999 4443 7899998
No 418
>PHA03189 UL14 tegument protein; Provisional
Probab=89.88 E-value=4.4 Score=33.66 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=41.1
Q ss_pred CCCcccccCCcEEEEEEEec--cCCCeEE-----EEE----------CCEEecCCCceeeeee----eccCccccceEEE
Q psy16652 280 RPRQGQALQYDAILECHVEA--YPPPAIV-----WIK----------DGVQIMNNQHYSVSHF----ATSDEFSDTSLRV 338 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~--~p~~~v~-----W~~----------~~~~~~~~~~~~~~~~----~~~~~~~~~~l~i 338 (384)
+....+..|+.+++.|.+.. .|.+.|. |.. .|.++.++-...+... .+..-....+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 34456788999999999843 4555432 211 3444443322222210 0000001123333
Q ss_pred eecCCCCCeEEEEEEEeCCcc
Q psy16652 339 ITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 339 ~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
. +..+-+|.|.|+..|..-.
T Consensus 139 ~-v~t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 139 R-VSTSTAGMYECVLRNETHG 158 (348)
T ss_pred E-EEecccceEEEEeccccce
Confidence 3 4456689999999997543
No 419
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=88.14 E-value=2.9 Score=28.17 Aligned_cols=58 Identities=12% Similarity=0.318 Sum_probs=35.9
Q ss_pred eEEEEEEe-cccCCCeEEEEeCCCccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 200 TVYLYCYA-NGFPAPTISWRRDNSAAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 200 ~~~l~C~~-~~~~~~~v~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+.-.|.+ .|.|+..|+|.-+-.... ..++...-.+.+.+......|.-..+|++.+.
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 45678985 789999999985322111 11111122234555566667777899999986
No 420
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=86.17 E-value=1.9 Score=39.20 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=17.9
Q ss_pred EEEEEeecCCCCCee--EEEEEE--EccCcceeeeEEEEEecCCccccCCC-ceEEeecCceEEEEEEecccC-------
Q psy16652 144 YILSIKEIQETDAGI--YKCEVI--ISLNNKVSAEVELIVRRPPIISDNST-RSVIVSEGQTVYLYCYANGFP------- 211 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~--Y~C~~~--~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~------- 211 (384)
..|.|..... -.|. |...+. ..........+.|.|...+....... ....+..++.+.|.....-.|
T Consensus 38 ~~l~ip~~~L-~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~ 116 (440)
T PF02010_consen 38 PQLTIPPYTL-PPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDS 116 (440)
T ss_dssp SECEEECES---SCEEEEEEEEE--BCTTEEEEEEEEEEEE---------------------------------------
T ss_pred eEEEeCcccC-CCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccCC
Confidence 3577777665 2344 455554 11222345566677765544333222 222333345677665432222
Q ss_pred CCeEEEEeCCCccc-c-------cCceeEeccEEEEcCCCCCCCeEEEEEEE--eCCCCceeeEEEEEE--EecCeEEec
Q psy16652 212 APTISWRRDNSAAL-S-------TGGSIYRGNILKIPNITKTDRGTYYCVAQ--NGVGRGMKRNIAVEV--EFAPVITIN 279 (384)
Q Consensus 212 ~~~v~W~~~~~~~~-~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~~l~v--~~~p~~~~~ 279 (384)
..++.|........ . ..........+.|..........|...+. ...+...+....+.+ ..+|.+.+.
T Consensus 117 ~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~ 196 (440)
T PF02010_consen 117 GLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSIS 196 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEc
Confidence 23678876443222 0 01112234456665443333333655554 333212223333333 234554443
Q ss_pred CCC---cccccCCcEEEEEEEecc----CCCeEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEE
Q psy16652 280 RPR---QGQALQYDAILECHVEAY----PPPAIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 280 ~~~---~~~~~g~~~~l~C~~~~~----p~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
... ..+..++.+.|.-.+.+. ....+.|..............+. ............|.|..-..+..+.|.
T Consensus 197 ~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~ 276 (440)
T PF02010_consen 197 CVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYT 276 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccc
Confidence 322 236667777776444332 23478898710000000000000 001111123455777765566666665
Q ss_pred --EEEEeCCcce-EEEEEEEEeeeec
Q psy16652 351 --CKAANKYGSA-QKEIELFDRETQT 373 (384)
Q Consensus 351 --C~a~n~~g~~-~~~~~l~v~~~~~ 373 (384)
+.|.+..+.. .+++.+.+..+|.
T Consensus 277 ~~l~v~~~~~~~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 277 FRLTVTDSSGSSGSASISFTVNAPPS 302 (440)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 5666665544 5667777755553
No 421
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=85.20 E-value=9.1 Score=25.65 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=37.5
Q ss_pred cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362 (384)
Q Consensus 290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 362 (384)
...|.+.+.+. ...+.|+.||..+..... ...+.+. ....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~-------------~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP-------------GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC-------------CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 45566666665 459999999999944332 2223322 24569999999888887665
No 422
>PHA03052 Hypothetical protein; Provisional
Probab=84.73 E-value=2.4 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=26.7
Q ss_pred CCcccccCCcEEEEEEEe-ccC--CCeEEEEECCEEec
Q psy16652 281 PRQGQALQYDAILECHVE-AYP--PPAIVWIKDGVQIM 315 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~-~~p--~~~v~W~~~~~~~~ 315 (384)
..+.+..|..++|.|.+. |.+ .+.+.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 445678899999999994 332 34699999998883
No 423
>PHA03281 envelope glycoprotein E; Provisional
Probab=84.16 E-value=34 Score=31.38 Aligned_cols=77 Identities=17% Similarity=0.197 Sum_probs=46.1
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccC---------CCceEEeecCceEEEEEEe
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDN---------STRSVIVSEGQTVYLYCYA 207 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~---------~~~~~~~~~g~~~~l~C~~ 207 (384)
..|.|.+++.+++|.|+-..+...+......+.|.|...+ .+.+. .-.+....+|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 4799999999999999998873333333435556665322 11100 0123345689988777664
Q ss_pred cc----cC-CCeEEEEeC
Q psy16652 208 NG----FP-APTISWRRD 220 (384)
Q Consensus 208 ~~----~~-~~~v~W~~~ 220 (384)
.. .+ ...+.|+.-
T Consensus 378 ~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred eeeccCCCceeEEEEEEe
Confidence 32 12 237899763
No 424
>PHA03112 IL-18 binding protein; Provisional
Probab=82.52 E-value=10 Score=27.80 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=40.5
Q ss_pred eeccCcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC-CCeeEE
Q psy16652 84 KDIAQTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET-DAGIYK 160 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~ 160 (384)
..+|+.+.|+|.+-+. | ..-+.|..++...-.+......-+.....+. .....+......|.+.+++.. +.-.++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~--~~~~~~~~~~~~l~l~~vt~~~~~T~~T 112 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESE--KPRTCDNEPRTDLIVYNVTDEMKFTKLT 112 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCc--cccccCCcceeEEEEEecCCcceecceE
Confidence 3679999999998653 5 4679999776321111111111111111110 011111233446777777744 223888
Q ss_pred EEEE
Q psy16652 161 CEVI 164 (384)
Q Consensus 161 C~~~ 164 (384)
|...
T Consensus 113 CVL~ 116 (141)
T PHA03112 113 CVLM 116 (141)
T ss_pred EEEe
Confidence 8875
No 425
>KOG0200|consensus
Probab=82.18 E-value=29 Score=33.30 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEEeecCCCCCeeEEEEEEE
Q psy16652 144 YILSIKEIQETDAGIYKCEVII 165 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~ 165 (384)
..+.+..+..+|.|.|+|.+.+
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec
Confidence 3578888889999999999975
No 426
>PHA03052 Hypothetical protein; Provisional
Probab=81.36 E-value=3.6 Score=25.53 Aligned_cols=32 Identities=16% Similarity=0.452 Sum_probs=24.3
Q ss_pred cceeeeccCcEEEEEEeecC---CCccEEEEEeCC
Q psy16652 80 QEQIKDIAQTADLKCSVQYA---DDYPVIWMKMDT 111 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~ 111 (384)
..+.+..|+.++|.|.+.-. ....|.|.-++.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~ 39 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGM 39 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence 45567899999999998532 356789998764
No 427
>PHA03240 envelope glycoprotein M; Provisional
Probab=77.02 E-value=5.4 Score=31.20 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=41.2
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeC-------CCCCCcccceeccC--c---ee---eeCCceEEeeCCCCceEEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMD-------TAKKMEPLPISMSG--S---LI---IHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~-------~~~~~~~~~~~~~~--~---~~---~~~~~~~~~~~~~~~~~~L 146 (384)
+.+.+|++|+|--.--..+.-.+.|++.. ++. ...+-...+. + .. ....+... .-.+++|
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~-~~plC~Ytppk~~r~ktl~~t~~nt~i~y----~C~NstL 107 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDK-LHPICTYDPPKNGKGKTLDESAENSFILY----ECHNSTL 107 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCC-CceeEEecCCccccccccccccCCCceEE----EeccceE
Confidence 34689999999754333456689999922 110 0111111110 0 00 01112211 2245689
Q ss_pred EEeecCCCCCeeEEEE
Q psy16652 147 SIKEIQETDAGIYKCE 162 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~ 162 (384)
.|-.+..+|.|.|.-.
T Consensus 108 ~i~~vn~sd~~nYcr~ 123 (258)
T PHA03240 108 IIAHLNLSDAGEYCRK 123 (258)
T ss_pred EEEEEeecCcchhhhc
Confidence 9999999999999544
No 428
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=73.85 E-value=19 Score=22.52 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=35.1
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECC-EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE--EEEEeCCcc
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDG-VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA--CKAANKYGS 359 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~--C~a~n~~g~ 359 (384)
..+..|+.+.|...........+.|.+++ ....... ... ......|.|. ..|.|..|.
T Consensus 6 ~~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~----------------~~t---~ty~~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 6 TYVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGS----------------SVT---HTYSSPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp SCEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSS----------------EEE---EEESSSEEEEEEEEEEETTSE
T ss_pred CEEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCC----------------CEE---EEcCCCeEEEEEEEEEECCCC
Confidence 34667888888887733344589999988 2221111 111 1233468885 667787776
Q ss_pred eE
Q psy16652 360 AQ 361 (384)
Q Consensus 360 ~~ 361 (384)
..
T Consensus 67 ~t 68 (69)
T PF00801_consen 67 AT 68 (69)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 429
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=71.12 E-value=25 Score=22.64 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=37.8
Q ss_pred cCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE--EEEEeCCcceEEE
Q psy16652 287 LQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA--CKAANKYGSAQKE 363 (384)
Q Consensus 287 ~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~--C~a~n~~g~~~~~ 363 (384)
.+..+.+.....+ .....+.|.+.+....... .. .......|.|. ..+.|..|+.+..
T Consensus 13 ~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~----------------~~---~~~y~~~G~y~v~l~v~n~~g~~~~~ 73 (79)
T smart00089 13 AGESVTFTATSSDDGSIVSYTWDFGDGTSSTGP----------------TV---THTYTKPGTYTVTLTVTNAVGSASAT 73 (79)
T ss_pred CCCEEEEEEECCCCCCeEEEEEEeCCCCccCCC----------------CE---EEEeCCCcEEEEEEEEEcCCCcEEEE
Confidence 5677888877654 3345788987554211111 11 22344668875 5677888876666
Q ss_pred EEEEE
Q psy16652 364 IELFD 368 (384)
Q Consensus 364 ~~l~v 368 (384)
+.+.|
T Consensus 74 ~~i~v 78 (79)
T smart00089 74 VTVVV 78 (79)
T ss_pred EEEEE
Confidence 66655
No 430
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=64.66 E-value=39 Score=22.43 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=28.2
Q ss_pred CcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC-CCCCeEEEEEEE-eCCcce
Q psy16652 289 YDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQYACKAA-NKYGSA 360 (384)
Q Consensus 289 ~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~-n~~g~~ 360 (384)
.+..|.|.+++.... .+.--++-..+.+.....+....+...........+.-. .+-.|.|.|... ++.+..
T Consensus 16 ~etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk~r~~~~r 90 (96)
T PF10430_consen 16 SETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGKVRDEVTR 90 (96)
T ss_dssp S-EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEEETTEEEE
T ss_pred CceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEEecCceEE
Confidence 345899999875444 455555443333322222222222221122223333333 344699999988 554433
No 431
>KOG0200|consensus
Probab=56.74 E-value=45 Score=32.01 Aligned_cols=125 Identities=15% Similarity=0.200 Sum_probs=65.7
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe---E-EecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV---I-TINRPRQGQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
....+.+..+...+.|.|+|.+.+ . ...+.+. ...+. + ...+.......+....+ +...+.+.+.|.
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 81 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWG 81 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec--C---ceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceee
Confidence 445677888889999999999998 1 2222222 11111 1 11222333445555555 433345677776
Q ss_pred ECCEEe-----cCCCceeee---ee--eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 309 KDGVQI-----MNNQHYSVS---HF--ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 309 ~~~~~~-----~~~~~~~~~---~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
...... ......... .. ..........+.+.++...+.|.|.|...+..+.......+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (609)
T KOG0200|consen 82 TNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFL 149 (609)
T ss_pred eeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEE
Confidence 654211 110000000 00 00001234567789999999999999998744444433333
No 432
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=55.81 E-value=1.1e+02 Score=24.62 Aligned_cols=103 Identities=17% Similarity=0.327 Sum_probs=48.6
Q ss_pred EEEEEe-ecCCCCCeeEEEEEEEccCcceeee----EEEEEecCCccccCCCceEEeecCceEEEEEEecccC--CCeEE
Q psy16652 144 YILSIK-EIQETDAGIYKCEVIISLNNKVSAE----VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP--APTIS 216 (384)
Q Consensus 144 ~~L~i~-~~~~~d~G~Y~C~~~~~~~~~~~~~----~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~ 216 (384)
++|.+. +....-.=..+|++.-......+.. ..-.|..+|.+. +.. ..-...|.+.--| ...+.
T Consensus 39 Stl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs------v~F---~~g~AVC~A~CVP~~~v~l~ 109 (211)
T PF02124_consen 39 STLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS------VRF---EDGYAVCTARCVPRGNVTLR 109 (211)
T ss_pred EEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE------EEe---cCCEEEEEcceeeCCCeEEE
Confidence 356662 2223333488999874433222222 222333333322 222 2334556664433 25799
Q ss_pred EEeCCCcccccCceeE------eccEEEEc---CCCCCCCe--EEEEEEEe
Q psy16652 217 WRRDNSAALSTGGSIY------RGNILKIP---NITKTDRG--TYYCVAQN 256 (384)
Q Consensus 217 W~~~~~~~~~~~~~~~------~~~~l~i~---~~~~~d~G--~Y~C~~~~ 256 (384)
|..++........... +.+...|. .++..| | +|+|.+..
T Consensus 110 W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~-~~~~YtC~l~G 159 (211)
T PF02124_consen 110 WSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDED-GPVEYTCRLIG 159 (211)
T ss_pred EEECCccCCCCCceeecCcccCCcceeEeecccCCCccC-CceeEEEEEee
Confidence 9988765422222211 11233333 333333 4 79999986
No 433
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=54.72 E-value=30 Score=21.46 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=35.3
Q ss_pred EEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 202 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
+|+|..+. ..-+.||-++..+..- ...++.+..+ .++|+|+-..+ -+.++.+.=...|++
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRl-----t~~Tlt~~~l----tcNFtCV~qSG----h~hSiWItW~~qPVL 61 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRL-----TQQTLTVVTL----TCNFTCVGQSG----HRHSIWITWYAQPVL 61 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeee-----cCCeEeeeee----eEEeeecCCCC----CCceEEEEEcCchhh
Confidence 47786644 2347899998766432 3334555443 47788875432 245566666556654
No 434
>PHA03112 IL-18 binding protein; Provisional
Probab=54.47 E-value=63 Score=23.86 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred ccCCcEEEEEEEecc-CCC-eEEEEECCE-EecCCC-------ceeeeee-eccCccccceEEEeecCCC-CCeEEEEEE
Q psy16652 286 ALQYDAILECHVEAY-PPP-AIVWIKDGV-QIMNNQ-------HYSVSHF-ATSDEFSDTSLRVITIERR-QFGQYACKA 353 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~-p~~-~v~W~~~~~-~~~~~~-------~~~~~~~-~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a 353 (384)
..++.+.|+|.+-++ |.- -+.|..++. ...+.. +...... ..........|.+.+++.+ +.-.++|+.
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL 115 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL 115 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence 458899999999765 543 689997652 222110 0110000 0000112334556666643 233788877
Q ss_pred EeCCcceEEE
Q psy16652 354 ANKYGSAQKE 363 (384)
Q Consensus 354 ~n~~g~~~~~ 363 (384)
....|....+
T Consensus 116 ~D~~~~~k~~ 125 (141)
T PHA03112 116 MDLDGPIKKS 125 (141)
T ss_pred ecCCchhhHH
Confidence 6665544433
No 435
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=52.13 E-value=2.3e+02 Score=27.46 Aligned_cols=197 Identities=11% Similarity=0.060 Sum_probs=108.8
Q ss_pred eeeeccCcEEEEEEeecCCCccE-EEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPV-IWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
.....|+++.+.|.+.+.....+ .|.+.++.. .....| ..+..+. ..+.-+|.|+
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~--------------ve~~~Y-------~~~~~~~---f~P~~~G~Y~ 451 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKE--------------EEKIDY-------GKNNWVN---FIPEEKGNYE 451 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEECCEE--------------EEEeec-------ccccEEE---EEECCCeeEE
Confidence 34667999999999877543332 344443321 111111 1111232 2468899999
Q ss_pred EEEEEccCc-----ceeeeEEEEEec-CCc-ccc-CCCceEEeecCceEEEEEEecccCCCeEE--EEeCCCcccccCce
Q psy16652 161 CEVIISLNN-----KVSAEVELIVRR-PPI-ISD-NSTRSVIVSEGQTVYLYCYANGFPAPTIS--WRRDNSAALSTGGS 230 (384)
Q Consensus 161 C~~~~~~~~-----~~~~~~~l~v~~-~~~-~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~v~--W~~~~~~~~~~~~~ 230 (384)
-.+.....- .....+.+.|.. .|. +.. ..+.......|+.+++.|.+.+.....+. -+.+|..... ..
T Consensus 452 IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~--t~ 529 (667)
T PRK14081 452 LEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEE--TD 529 (667)
T ss_pred EEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEE--ee
Confidence 988743221 224556677764 332 221 22333446789999999998764333333 2334433211 11
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeC--CC---CceeeEEEEEEEecCeEE---ecCCCcccccCCcEEEEEEEeccCC
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNG--VG---RGMKRNIAVEVEFAPVIT---INRPRQGQALQYDAILECHVEAYPP 302 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~---~~~~~~~~l~v~~~p~~~---~~~~~~~~~~g~~~~l~C~~~~~p~ 302 (384)
......+++. +--+|.|+-.+... .. -...+.+.+.|..+..+. +.........++.+++.-.+.|...
T Consensus 530 Ys~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~gg~~ 606 (667)
T PRK14081 530 YIKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSEGGKD 606 (667)
T ss_pred ccccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEccCCCc
Confidence 2233445554 44579998876632 21 123667888888764332 2335566778889998888877555
Q ss_pred CeEEE
Q psy16652 303 PAIVW 307 (384)
Q Consensus 303 ~~v~W 307 (384)
..+.+
T Consensus 607 v~Yef 611 (667)
T PRK14081 607 VCYEF 611 (667)
T ss_pred EEEEE
Confidence 54443
No 436
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=50.20 E-value=99 Score=22.64 Aligned_cols=59 Identities=14% Similarity=0.352 Sum_probs=27.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecC-----CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEe
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLT 136 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (384)
.+...|-+..+..|++|.++|..... ....+.|+..++. ...-...+....+.++|.+.
T Consensus 34 ~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGk----G~L~~~~g~~~~pND~Y~L~ 97 (137)
T PF12988_consen 34 TVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGK----GTLRMDDGTVLLPNDRYPLE 97 (137)
T ss_dssp EEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-----EEEEETTS-EE-TTSEEE-S
T ss_pred EEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCC----EEEEecCCcEeccccceecC
Confidence 34444555668899999999998543 2446778776553 12222333334445555443
No 437
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.69 E-value=23 Score=26.84 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=22.5
Q ss_pred CCceEEEEEeeecceEEEEEEEeeec
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMS 50 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~ 50 (384)
.++.-|.|.+.+.+|+|.|..++...
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEEC
Confidence 45667999999999999999998764
No 438
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=42.98 E-value=1.5e+02 Score=22.77 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=39.7
Q ss_pred EEEEEec-cCCCeEEEEECCEEecCCCceeeee-eec-cCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 293 LECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSH-FAT-SDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 293 l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
..|..+. ...|.++|......+.++.....=. .+. ....-.+.+.|...+-.|.-.|.|.+.-..
T Consensus 112 AvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 112 AVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred EEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccccc
Confidence 4688754 5678999999888887665433210 011 111123445566666667788999987654
No 439
>PHA02935 Hypothetical protein; Provisional
Probab=40.25 E-value=41 Score=26.14 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=34.9
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE-eecCceEEEEEEecc
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI-VSEGQTVYLYCYANG 209 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~ 209 (384)
-|.|..++-+|+|.|.=......+-....+..+.|... +......... .+.--.+.+.|....
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkan--iidltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKAN--IIDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEee--eEeccceeeeeccccEEEEEEEEEee
Confidence 47889999999999987654333333344444444322 1111122212 233457889998643
No 440
>PHA03240 envelope glycoprotein M; Provisional
Probab=38.64 E-value=1.8e+02 Score=23.27 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=25.0
Q ss_pred ccceEEEeecCCCCCeEEEEEEEeCCcce----EEEEEEEEe
Q psy16652 332 SDTSLRVITIERRQFGQYACKAANKYGSA----QKEIELFDR 369 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~ 369 (384)
.+++|.|..+...|.|+|.-.--...|.. .+=++|.++
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~r 144 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLILR 144 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEeee
Confidence 47889999999999999953333334432 223556653
No 441
>PHA03282 envelope glycoprotein E; Provisional
Probab=37.72 E-value=81 Score=28.53 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred cceEEEeecCCCCCeEEEEEEEe
Q psy16652 333 DTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 333 ~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
+.+|.|..++.+|+|.|+-.+..
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~ 145 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSR 145 (540)
T ss_pred cceEEEeeccccCCceEEEEecC
Confidence 56799999999999999988644
No 442
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=36.81 E-value=1.1e+02 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=22.5
Q ss_pred CceEEEEEeecCCCCCeeEEEEEEEcc
Q psy16652 141 TSTYILSIKEIQETDAGIYKCEVIISL 167 (384)
Q Consensus 141 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 167 (384)
....-|.|.+.+.+|+|.|.-+++.+.
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECC
Confidence 344569999999999999999998654
No 443
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.49 E-value=40 Score=20.90 Aligned_cols=39 Identities=10% Similarity=-0.051 Sum_probs=21.9
Q ss_pred CCCCcch----hccccCCCCCCCC------CCCCceEEEEEeeecceEE
Q psy16652 3 APSPFDF----VNRFQNTSTPWDP------STQKPIRFFIHEVTGEKVT 41 (384)
Q Consensus 3 ~~~~~w~----~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G 41 (384)
..++.|| .+++..+..-.+. .+=++..|+|-+|+..+.|
T Consensus 15 ~~~V~Wy~~~~~~~~~~lC~g~~~~~~~l~~tCn~qNLTLinVt~~~~G 63 (63)
T PF02440_consen 15 DGPVTWYKFHSDGDFKKLCNGNKTKHPELNHTCNGQNLTLINVTKTYNG 63 (63)
T ss_pred CCceEEEEecCCCCccccCCCCCccccceEeEecCCeEEEEEecccccC
Confidence 4578999 4445544421111 2223566788888777665
No 444
>COG5475 Uncharacterized small protein [Function unknown]
Probab=34.72 E-value=1e+02 Score=18.38 Aligned_cols=30 Identities=20% Similarity=0.466 Sum_probs=20.9
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
..+++...+.+ |.|.|...+..|...+.++
T Consensus 18 P~Mtvs~~ss~--Gmy~C~Wf~g~g~~~~~F~ 47 (60)
T COG5475 18 PRMTVSGYSSD--GMYECRWFDGYGVKREAFH 47 (60)
T ss_pred ceEEEeccccC--CeEEEEEecCCCccccccc
Confidence 34555554433 9999999999997665554
No 445
>KOG1026|consensus
Probab=33.32 E-value=29 Score=33.67 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=51.5
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
...+..+..+++.|...+.|.+.+.|+.++....+.......- . ....... .+.|.++|..|...
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c-------~--~~~~~~~------~~~c~~E~~~~~~~ 265 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC-------R--SECEVLE------NDLCIAENAVARSN 265 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccc-------c--ccceeee------chhhHHHHhhhhcC
Confidence 4566778899999999999999999998876654433211110 0 1111111 18899999999888
Q ss_pred EEEEEEEeee
Q psy16652 362 KEIELFDRET 371 (384)
Q Consensus 362 ~~~~l~v~~~ 371 (384)
.++.+.+..+
T Consensus 266 ~~v~~~~~~p 275 (774)
T KOG1026|consen 266 PSILLVVDLP 275 (774)
T ss_pred ceeeeEEecc
Confidence 8887777666
No 446
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=30.78 E-value=2.2e+02 Score=20.95 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=36.3
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEE--eccCCC---eEEEEE----------CCEEecCCCceeeeeeeccCccccceE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHV--EAYPPP---AIVWIK----------DGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~---~v~W~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
++-.+..-|....+..|+++.+.|.. .|+... .+.++. +|..+..++++.+.. ..-.|
T Consensus 31 YpF~v~tmPVpk~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~-------~~FRL 103 (137)
T PF12988_consen 31 YPFTVETMPVPKKIKKGETVEIRCELKREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEK-------EVFRL 103 (137)
T ss_dssp -SEEEEE----SS--TTEEEEEEEEEEESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S--------SEEEE
T ss_pred CCcEEEEeccccccCCCCEEEEEEEEecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCc-------CEEEE
Confidence 34344444555677899999999998 343333 466654 455555555555432 12233
Q ss_pred EEeecCCCCCeEEEEEEEeCCcc
Q psy16652 337 RVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
.-.+.+ ++.-...-.+....|.
T Consensus 104 YYTS~s-~~~q~idv~veDnfGq 125 (137)
T PF12988_consen 104 YYTSRS-DDQQTIDVYVEDNFGQ 125 (137)
T ss_dssp EEEE-S-SS-EEEEEEEEETTTE
T ss_pred EEecCC-CCCceeEEEEEeCCCC
Confidence 333333 3445556666666654
No 447
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=30.42 E-value=1.2e+02 Score=19.43 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=25.7
Q ss_pred ccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 286 ALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
..+..+.|.|.. |...+.+..||..... .+.+.-..+...+.+.+.+.+....|..+..
T Consensus 13 ~~~~~v~l~~~~---~~~~I~YT~DGs~Pt~----------------~s~~Y~~Pi~i~~~~~vka~a~~~~g~~s~v 71 (75)
T PF03174_consen 13 DEGQTVTLSSDT---PGATIYYTLDGSEPTK----------------SSPLYTGPITIPESGTVKARAFDNGGNVSEV 71 (75)
T ss_dssp EETTEEEEE-SS---TTSEEEEESSSSSS--------------------EE--CCC--B--S--EEEEE-TTS-B---
T ss_pred ecCeEEEEEeCC---CCCEEEEEcCCCcccc----------------cCcccCcCEEeCCCcEEEEEEEcCCCCcCcc
Confidence 345678888833 4457888777754321 1122233455555667888888777655543
No 448
>PHA02935 Hypothetical protein; Provisional
Probab=29.83 E-value=1.2e+02 Score=23.59 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=33.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCccc-ccCCcEEEEEEEec
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ-ALQYDAILECHVEA 299 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~-~~g~~~~l~C~~~~ 299 (384)
-|.|..++.+|+|.|.-+..-..|-....+..+.|+..- +.......+. ..-.++.+.|....
T Consensus 103 clnisslryedsgsykgvshlkdgvivtttmnisvkani-idltgrvryltrnycevkirceiks 166 (349)
T PHA02935 103 CLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANI-IDLTGRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred EeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeee-EeccceeeeeccccEEEEEEEEEee
Confidence 577788889999999876555555443444444443211 1111111111 11246777887643
No 449
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=25.14 E-value=2.1e+02 Score=18.93 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=34.1
Q ss_pred eEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 200 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
...|.+++.+. ...+.|+.++..+.... ....+.+.. ...|.|+-.+.+..|..
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----~~~~~~~~~---~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----PGHQLFWQP---DRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC----CCCeEEeCC---CCCeeEEEEEEcCCCCE
Confidence 45566666554 34899999998762221 222343333 45799999998877765
No 450
>PF03293 Pox_RNA_pol: Poxvirus DNA-directed RNA polymerase, 18 kD subunit; InterPro: IPR004973 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The Poxvirus DNA-directed RNA polymerase (2.7.7.6 from EC) catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. The enzyme consists of at least eight subunits, this is the 18 kDa subunit.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0019083 viral transcription
Probab=24.48 E-value=2.9e+02 Score=20.28 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=20.3
Q ss_pred EEEEEeCCcce-EEEEEEEEeeeecCCccCCccccC
Q psy16652 350 ACKAANKYGSA-QKEIELFDRETQTGDETFPIFYAN 384 (384)
Q Consensus 350 ~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~ 384 (384)
.|..+|..-.. .+.+++..++...+...-=+|+|+
T Consensus 122 YCfirNg~vY~ngs~Vsv~LkEaq~g~~S~FvFla~ 157 (160)
T PF03293_consen 122 YCFIRNGVVYDNGSEVSVVLKEAQQGMESNFVFLAS 157 (160)
T ss_pred EEEEECCEEecCCCEEEEEehhhhcCCcceEEEEEE
Confidence 48888764432 345666666665555554466653
No 451
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=23.52 E-value=2.7e+02 Score=19.60 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=16.9
Q ss_pred ccceEEEeecCCCCCeEEEEEEE
Q psy16652 332 SDTSLRVITIERRQFGQYACKAA 354 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~ 354 (384)
.+-+|.|..-+.+|.|+|.-...
T Consensus 101 EnLsL~Il~SrkE~EGWYfmtlE 123 (126)
T PF06214_consen 101 ENLSLEILESRKEDEGWYFMTLE 123 (126)
T ss_dssp TTTEEEETT--GGG-EEEEEEEE
T ss_pred ccceeehhccccccCceEEEEee
Confidence 57789999999999999987654
No 452
>PHA03292 envelope glycoprotein I; Provisional
Probab=20.91 E-value=2.5e+02 Score=24.78 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceEEEEEeecCCCCCeeEEEEEEEccC
Q psy16652 142 STYILSIKEIQETDAGIYKCEVIISLN 168 (384)
Q Consensus 142 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 168 (384)
...-|.|.+-+.+|+|.|.-+++.+..
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga 152 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHA 152 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCC
Confidence 445789999999999999999986543
No 453
>PHA03290 envelope glycoprotein I; Provisional
Probab=20.83 E-value=2.3e+02 Score=24.50 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 183 (384)
|.|.+-+.+|+|.|.-+++ -.+.....-+.+.+...|
T Consensus 131 L~I~~P~~~DSGiY~LRV~-Ldga~~sDvF~lsv~Vyp 167 (357)
T PHA03290 131 FKINKPGIEDAGIYLLLVQ-LDHSRLFDGFFLGLNVYP 167 (357)
T ss_pred EEeCCCCcccCeeEEEEEE-eCCCcccceEEEEEEEec
Done!