Query psy16652
Match_columns 384
No_of_seqs 244 out of 2759
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 18:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 2.6E-45 8.8E-50 340.0 29.0 345 2-373 129-479 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 1.3E-43 4.3E-48 328.7 31.9 338 2-370 225-570 (570)
3 3laf_A Deleted in colorectal c 100.0 1.8E-43 6.1E-48 314.6 26.1 341 2-372 50-403 (403)
4 3kld_A Contactin 4, axcam, BIG 100.0 2.8E-43 9.5E-48 310.9 23.9 336 2-370 36-383 (384)
5 1cs6_A Axonin-1; neural cell a 100.0 1E-42 3.4E-47 307.5 25.5 334 2-369 35-381 (382)
6 3qs7_E FL cytokine receptor; i 100.0 3.2E-42 1.1E-46 306.2 24.6 333 1-377 75-421 (423)
7 2rik_A Titin; I-SET IG fold, p 100.0 1.8E-40 6.3E-45 281.0 34.2 278 70-370 3-284 (284)
8 2v5m_A Dscam; neurobiology SPL 100.0 1.7E-41 5.7E-46 300.4 27.5 331 2-368 32-387 (388)
9 3qs9_E FL cytokine receptor; i 100.0 8.9E-42 3.1E-46 311.1 23.7 326 3-372 77-416 (527)
10 3p3y_A Neurofascin; IG domains 100.0 9.2E-41 3.2E-45 297.2 26.5 339 2-370 45-403 (404)
11 1bih_A Hemolin; insect immunit 100.0 3.3E-40 1.1E-44 292.8 27.0 339 2-368 35-394 (395)
12 2ec8_A MAST/stem cell growth f 100.0 3.2E-40 1.1E-44 303.4 27.4 333 5-373 63-414 (524)
13 1qz1_A Neural cell adhesion mo 100.0 1.1E-38 3.8E-43 271.0 32.3 277 72-370 2-290 (291)
14 2wim_A N-CAM 2, NCAM2, neural 100.0 5.1E-39 1.8E-43 273.1 30.0 280 71-374 3-288 (291)
15 1e07_A Carcinoembryonic antige 100.0 3.8E-39 1.3E-43 303.5 30.2 316 4-370 318-640 (642)
16 2yd9_A Receptor-type tyrosine- 100.0 1.4E-38 4.7E-43 272.1 31.0 278 69-374 3-295 (304)
17 1e07_A Carcinoembryonic antige 100.0 1.3E-38 4.4E-43 299.9 29.7 322 2-372 138-466 (642)
18 2ec8_A MAST/stem cell growth f 100.0 1.2E-39 4.3E-44 299.5 21.4 347 3-376 143-516 (524)
19 3qs9_E FL cytokine receptor; i 100.0 4E-39 1.4E-43 293.7 22.3 339 1-372 166-512 (527)
20 3dmk_A DOWN syndrome cell adhe 100.0 5.9E-38 2E-42 303.2 29.6 339 2-373 371-716 (816)
21 2rcj_C Light chain; immunoglob 100.0 7.6E-38 2.6E-42 287.6 27.0 329 25-367 67-417 (523)
22 3dmk_A DOWN syndrome cell adhe 100.0 5.5E-38 1.9E-42 303.4 26.6 342 1-372 456-811 (816)
23 2ocw_A Polymeric-immunoglobuli 100.0 6.1E-37 2.1E-41 285.5 31.7 327 27-372 184-548 (585)
24 1wio_A CD4, T-cell surface gly 100.0 1.8E-37 6.3E-42 271.8 19.1 290 2-368 22-361 (363)
25 4fqp_A Poliovirus receptor; im 100.0 2.7E-36 9.2E-41 258.9 25.7 285 76-373 4-307 (313)
26 2ocw_A Polymeric-immunoglobuli 100.0 8.9E-36 3.1E-40 277.6 30.1 328 25-373 72-444 (585)
27 2o26_X MAST/stem cell growth f 100.0 6.9E-36 2.4E-40 253.6 25.9 268 70-372 10-290 (290)
28 2rcj_C Light chain; immunoglob 100.0 7.8E-36 2.7E-40 274.2 26.4 338 4-359 146-513 (523)
29 3ejj_X Macrophage colony-stimu 100.0 1.9E-35 6.4E-40 250.8 25.6 274 71-373 3-284 (289)
30 3u83_A Poliovirus receptor-rel 100.0 2.1E-35 7.1E-40 255.6 26.4 290 73-375 15-325 (331)
31 4fom_A Poliovirus receptor-rel 100.0 6.9E-36 2.3E-40 255.9 21.1 283 80-373 7-303 (308)
32 3qs7_E FL cytokine receptor; i 100.0 1E-35 3.5E-40 264.4 21.3 311 36-372 3-325 (423)
33 3v2a_R Vascular endothelial gr 100.0 5.1E-39 1.7E-43 309.1 0.0 361 1-381 357-767 (772)
34 1z7z_I Intercellular adhesion 100.0 8.4E-36 2.9E-40 268.9 20.7 313 5-370 120-449 (450)
35 2y25_A Myomesin; structural pr 100.0 5.1E-36 1.7E-40 257.8 18.0 277 69-371 4-316 (317)
36 4dep_C Interleukin-1 receptor 100.0 7.6E-35 2.6E-39 253.9 23.3 282 79-372 14-335 (349)
37 3laf_A Deleted in colorectal c 100.0 7.2E-34 2.5E-38 252.7 29.7 281 68-373 17-314 (403)
38 1qgc_4 Protein (immunoglobulin 100.0 2.7E-36 9.1E-41 271.3 13.8 324 26-367 73-436 (438)
39 3oq3_B IFN-alpha/beta binding 100.0 1.8E-34 6.2E-39 249.2 24.5 273 73-369 30-329 (329)
40 2wng_A Tyrosine-protein phosph 100.0 6.4E-35 2.2E-39 251.9 21.4 288 73-367 4-317 (327)
41 1ry7_B FGFR-3, fibroblast grow 100.0 6.2E-36 2.1E-40 259.2 14.4 278 72-373 9-330 (334)
42 4dkd_C Macrophage colony-stimu 100.0 3.7E-35 1.3E-39 249.4 18.7 276 70-375 2-286 (292)
43 1z7z_I Intercellular adhesion 100.0 3.9E-34 1.3E-38 258.0 26.2 312 7-375 36-372 (450)
44 3mjg_X Beta-type platelet-deri 100.0 5.1E-34 1.8E-38 242.0 25.0 278 73-377 1-285 (289)
45 2y23_A Myomesin; structural pr 100.0 1.3E-34 4.5E-39 248.4 20.8 259 82-369 11-311 (312)
46 3rjd_A High affinity immunoglo 100.0 8.2E-34 2.8E-38 237.2 23.8 248 72-369 1-261 (262)
47 1itb_B Type 1 interleukin-1 re 100.0 2.2E-34 7.5E-39 247.3 19.9 274 80-370 13-314 (315)
48 3p3y_A Neurofascin; IG domains 100.0 6E-34 2.1E-38 253.3 20.4 281 69-373 13-314 (404)
49 3kld_A Contactin 4, axcam, BIG 100.0 2.4E-33 8.1E-38 247.4 23.6 277 70-373 3-297 (384)
50 1igt_B IGG2A intact antibody - 100.0 2.1E-35 7E-40 265.8 10.3 316 26-358 77-433 (444)
51 3o4o_C Interleukin-1 receptor 100.0 5.6E-34 1.9E-38 247.4 15.9 285 69-370 15-335 (339)
52 1bih_A Hemolin; insect immunit 100.0 4.9E-33 1.7E-37 246.6 21.8 279 70-373 4-310 (395)
53 1iga_A IGA1; immunoglobulin; N 100.0 7.7E-33 2.6E-37 250.9 23.4 319 25-360 77-444 (475)
54 1cs6_A Axonin-1; neural cell a 100.0 1.1E-32 3.6E-37 243.4 23.2 274 71-373 3-296 (382)
55 1wio_A CD4, T-cell surface gly 100.0 1.6E-33 5.5E-38 246.7 15.6 269 82-372 4-295 (363)
56 3v2a_R Vascular endothelial gr 100.0 7E-33 2.4E-37 266.4 18.4 310 27-373 85-422 (772)
57 2v5m_A Dscam; neurobiology SPL 100.0 5.7E-32 2E-36 239.2 22.6 275 71-373 2-309 (388)
58 1qgc_4 Protein (immunoglobulin 100.0 4.7E-32 1.6E-36 243.6 21.9 290 74-370 3-338 (438)
59 3vh8_G Killer cell immunoglobu 100.0 1.6E-31 5.6E-36 229.4 24.2 271 69-372 21-315 (316)
60 1hzh_H IGG, immunoglobulin hea 100.0 1.4E-33 4.9E-38 254.6 11.6 319 25-360 76-444 (457)
61 1igy_B IGG1 intact antibody MA 100.0 9.9E-35 3.4E-39 260.5 2.3 314 26-359 76-424 (434)
62 2oz4_A Intercellular adhesion 100.0 1.3E-30 4.4E-35 218.0 23.7 246 70-370 4-264 (265)
63 1igt_B IGG2A intact antibody - 100.0 1.2E-30 4.2E-35 234.6 24.3 281 78-361 6-332 (444)
64 1za6_B IGG heavy chain; immuno 100.0 2E-30 6.8E-35 225.2 21.1 281 78-361 6-332 (344)
65 1iga_A IGA1; immunoglobulin; N 100.0 5.7E-29 2E-33 225.5 28.7 288 76-367 5-342 (475)
66 1zvo_C Myeloma immunoglobulin 100.0 1.1E-28 3.9E-33 225.0 27.9 330 25-370 77-505 (512)
67 2rik_A Titin; I-SET IG fold, p 100.0 5E-29 1.7E-33 210.7 22.5 244 2-271 33-283 (284)
68 2nzi_A Titin; IG-domain, FNIII 100.0 5.5E-29 1.9E-33 212.6 22.6 258 71-363 3-283 (305)
69 1hzh_H IGG, immunoglobulin hea 100.0 2E-29 6.8E-34 227.5 20.3 280 78-366 6-346 (457)
70 2wqr_A IG epsilon chain C regi 100.0 1.5E-29 5.2E-34 217.7 14.5 277 70-359 5-309 (323)
71 2jll_A NCAM2, neural cell adhe 100.0 3.7E-27 1.3E-31 208.4 26.8 274 72-370 1-288 (389)
72 2yd9_A Receptor-type tyrosine- 100.0 1.5E-29 5.1E-34 216.0 10.9 255 2-276 34-295 (304)
73 2y25_A Myomesin; structural pr 100.0 3E-29 1E-33 215.5 11.7 246 2-272 35-315 (317)
74 1igy_B IGG1 intact antibody MA 100.0 2.3E-30 7.8E-35 232.1 4.7 278 79-360 6-321 (434)
75 2y23_A Myomesin; structural pr 100.0 4.8E-28 1.6E-32 207.5 18.7 249 2-270 30-310 (312)
76 1ry7_B FGFR-3, fibroblast grow 100.0 1.4E-28 4.8E-33 212.9 15.0 253 2-274 37-329 (334)
77 1qz1_A Neural cell adhesion mo 100.0 5.3E-28 1.8E-32 205.1 16.9 245 3-272 32-290 (291)
78 1zvo_C Myeloma immunoglobulin 100.0 4.5E-26 1.5E-30 207.8 29.2 281 79-360 7-387 (512)
79 1itb_B Type 1 interleukin-1 re 100.0 5.8E-28 2E-32 207.3 14.9 243 3-271 35-313 (315)
80 4fqp_A Poliovirus receptor; im 100.0 3.8E-27 1.3E-31 201.9 19.7 229 25-275 76-307 (313)
81 2iep_A Muscle-specific kinase 100.0 7.1E-27 2.4E-31 185.5 18.5 175 190-372 14-192 (192)
82 2wim_A N-CAM 2, NCAM2, neural 100.0 1.6E-27 5.5E-32 202.1 15.7 247 4-274 33-286 (291)
83 2yd1_A Tyrosine-protein phosph 99.9 4.4E-26 1.5E-30 183.9 22.4 178 190-376 13-206 (212)
84 3oq3_B IFN-alpha/beta binding 99.9 2.5E-27 8.7E-32 204.4 15.8 240 2-270 66-328 (329)
85 2a38_A Titin; Z1Z2, structural 99.9 2.6E-26 9.1E-31 182.5 20.2 174 190-369 12-194 (194)
86 3ejj_X Macrophage colony-stimu 99.9 9.6E-27 3.3E-31 197.1 18.6 241 5-274 31-283 (289)
87 2wv3_A Neuroplastin; igcam, me 99.9 5.8E-26 2E-30 179.8 21.8 170 192-369 11-189 (190)
88 2o26_X MAST/stem cell growth f 99.9 5.5E-27 1.9E-31 198.7 16.9 234 5-274 39-290 (290)
89 2j8h_A Titin, connectin; cardi 99.9 2.8E-26 9.6E-31 182.8 19.1 175 190-370 11-197 (197)
90 4fom_A Poliovirus receptor-rel 99.9 1.9E-28 6.4E-33 209.7 5.1 231 24-275 70-303 (308)
91 2v5t_A NCAM2, N-CAM 2, neural 99.9 1.4E-25 4.9E-30 177.5 20.2 174 190-370 9-188 (189)
92 2yd6_A PTPRD protein; hydrolas 99.9 2.4E-25 8.3E-30 179.5 21.0 177 190-372 13-206 (212)
93 2yd1_A Tyrosine-protein phosph 99.9 2.8E-25 9.5E-30 179.1 20.9 190 70-274 4-202 (212)
94 2c5d_C AXL oncogene, tyrosine- 99.9 1.8E-25 6.1E-30 177.8 19.5 167 190-368 9-191 (195)
95 1rhf_A Tyrosine-protein kinase 99.9 2.6E-25 9E-30 174.8 20.2 167 189-369 8-182 (182)
96 3lcy_A Titin; A-BAND, IG tande 99.9 1.8E-25 6.2E-30 178.1 19.3 175 190-370 14-196 (197)
97 3u83_A Poliovirus receptor-rel 99.9 2.4E-26 8.4E-31 198.6 15.1 228 24-275 88-323 (331)
98 2v44_A NCAM2, neural cell adhe 99.9 7.1E-25 2.4E-29 173.5 22.2 170 190-368 9-185 (189)
99 2va4_A NCAM2, N-CAM 2, neural 99.9 4.6E-25 1.6E-29 175.0 20.2 172 191-369 12-192 (192)
100 4fa8_A Secreted protein BARF1; 99.9 8.2E-26 2.8E-30 179.7 15.7 165 193-363 3-195 (203)
101 4dep_C Interleukin-1 receptor 99.9 1.4E-27 4.8E-32 207.9 5.8 246 3-272 47-333 (349)
102 1epf_A NCAM, protein (neural c 99.9 1.1E-24 3.6E-29 172.7 20.8 171 190-368 9-189 (191)
103 3rbs_A Myomesin-1; immunoglobu 99.9 3.9E-25 1.3E-29 176.8 18.1 168 191-369 10-206 (207)
104 3grw_A Fibroblast growth facto 99.9 6.7E-25 2.3E-29 180.6 19.9 192 190-382 22-230 (241)
105 2c5d_C AXL oncogene, tyrosine- 99.9 1E-24 3.6E-29 173.4 20.0 183 72-270 2-191 (195)
106 1rhf_A Tyrosine-protein kinase 99.9 5E-25 1.7E-29 173.2 17.1 179 72-270 2-181 (182)
107 2c1o_A IGK-C protein; FAB frag 99.9 1.9E-25 6.4E-30 185.4 15.2 208 151-363 11-248 (254)
108 3k0w_A Mucosa-associated lymph 99.9 1.2E-24 4.1E-29 176.1 19.4 164 190-372 25-204 (218)
109 4dkd_C Macrophage colony-stimu 99.9 6.7E-26 2.3E-30 192.2 12.5 241 5-274 31-283 (292)
110 3rjd_A High affinity immunoglo 99.9 3.2E-25 1.1E-29 185.0 16.2 212 2-262 29-250 (262)
111 3sgj_C Human FCG3A receptor; r 99.9 3.6E-25 1.2E-29 176.9 15.6 163 193-378 17-182 (204)
112 2yd6_A PTPRD protein; hydrolas 99.9 9.5E-25 3.2E-29 176.0 18.2 190 70-276 4-208 (212)
113 2j8h_A Titin, connectin; cardi 99.9 2.5E-24 8.5E-29 171.5 20.1 185 71-271 3-196 (197)
114 1f97_A Junction adhesion molec 99.9 9.2E-25 3.2E-29 176.1 17.6 183 189-371 7-208 (212)
115 2nzi_A Titin; IG-domain, FNIII 99.9 2E-24 6.7E-29 184.4 20.3 181 190-376 11-203 (305)
116 2vr9_A Roundabout 1, ROBO; imm 99.9 2.5E-25 8.5E-30 180.1 14.0 184 190-373 16-209 (217)
117 3vh8_G Killer cell immunoglobu 99.9 1.1E-25 3.6E-30 193.2 12.1 248 3-274 51-315 (316)
118 2v44_A NCAM2, neural cell adhe 99.9 5.3E-24 1.8E-28 168.4 20.8 180 74-270 4-187 (189)
119 2iep_A Muscle-specific kinase 99.9 4.7E-25 1.6E-29 174.9 14.6 187 70-274 5-192 (192)
120 2jll_A NCAM2, neural cell adhe 99.9 6E-24 2E-28 187.8 22.8 181 191-375 8-199 (389)
121 3ojm_B Fibroblast growth facto 99.9 2.4E-24 8.2E-29 176.1 18.6 187 190-377 26-228 (231)
122 3s97_C Contactin-1; carbonic a 99.9 2.2E-24 7.4E-29 172.4 17.8 174 188-370 13-201 (201)
123 3lcy_A Titin; A-BAND, IG tande 99.9 6.1E-24 2.1E-28 169.2 20.3 185 70-272 5-196 (197)
124 2wng_A Tyrosine-protein phosph 99.9 6.8E-26 2.3E-30 195.4 9.7 252 2-269 32-317 (327)
125 2v9r_A Roundabout homolog 1; p 99.9 7.5E-25 2.6E-29 176.6 15.2 177 190-374 16-206 (212)
126 2r15_A Myomesin-1; sarcomeric 99.9 5E-24 1.7E-28 171.8 19.8 172 195-371 14-211 (212)
127 2c1o_A IGK-C protein; FAB frag 99.9 7.6E-25 2.6E-29 181.8 15.2 213 35-260 11-244 (254)
128 2v9r_A Roundabout homolog 1; p 99.9 9.2E-25 3.2E-29 176.1 14.7 202 69-279 6-209 (212)
129 2a38_A Titin; Z1Z2, structural 99.9 4.1E-24 1.4E-28 169.8 18.1 183 71-270 4-193 (194)
130 1epf_A NCAM, protein (neural c 99.9 6.2E-24 2.1E-28 168.3 19.0 174 72-260 2-180 (191)
131 3mjg_X Beta-type platelet-deri 99.9 1E-24 3.5E-29 184.7 14.5 241 6-277 28-283 (289)
132 2ifg_A High affinity nerve gro 99.9 5.6E-26 1.9E-30 197.3 6.0 207 155-372 136-347 (347)
133 3o4o_C Interleukin-1 receptor 99.9 2E-26 6.9E-31 199.8 3.1 235 2-261 53-325 (339)
134 2oz4_A Intercellular adhesion 99.9 1.1E-24 3.7E-29 182.0 13.2 218 5-272 37-264 (265)
135 2wv3_A Neuroplastin; igcam, me 99.9 3.5E-23 1.2E-27 163.8 20.7 175 71-271 2-189 (190)
136 3b5h_A Cervical EMMPRIN, HAB18 99.9 2.9E-23 1E-27 163.4 19.2 166 193-370 8-183 (184)
137 3rbs_A Myomesin-1; immunoglobu 99.9 1.7E-23 5.9E-28 167.2 18.0 176 73-269 4-204 (207)
138 1nbq_A JAM, junctional adhesio 99.9 1.2E-24 4.2E-29 174.9 11.2 180 190-369 11-208 (209)
139 3r4d_A CEA-related cell adhesi 99.9 2.5E-23 8.4E-28 167.2 18.8 171 193-373 9-203 (208)
140 2vr9_A Roundabout 1, ROBO; imm 99.9 5.6E-24 1.9E-28 172.2 15.1 190 68-270 5-205 (217)
141 3k0w_A Mucosa-associated lymph 99.9 1.2E-23 4.2E-28 170.2 16.8 177 69-276 15-206 (218)
142 3jz7_A MCAR, CAR, coxsackievir 99.9 4.6E-24 1.6E-28 172.2 13.9 174 190-371 7-213 (214)
143 2x1w_L Vascular endothelial gr 99.9 9.2E-24 3.2E-28 170.2 15.6 182 190-372 14-209 (213)
144 4fa8_A Secreted protein BARF1; 99.9 4.9E-24 1.7E-28 169.4 13.4 177 81-262 2-193 (203)
145 2v5t_A NCAM2, N-CAM 2, neural 99.9 3.3E-23 1.1E-27 163.8 18.1 182 72-271 2-187 (189)
146 3r4d_A CEA-related cell adhesi 99.9 1.1E-23 3.6E-28 169.4 15.2 192 76-276 3-204 (208)
147 1vca_A VCAM-D1,2, human vascul 99.9 1.8E-23 6.2E-28 166.7 15.8 177 192-372 10-199 (202)
148 3jz7_A MCAR, CAR, coxsackievir 99.9 1.2E-23 4E-28 169.8 14.7 195 76-273 4-213 (214)
149 3sgj_C Human FCG3A receptor; r 99.9 1.8E-23 6.2E-28 166.9 15.4 171 70-275 5-177 (204)
150 1fnl_A Low affinity immunoglob 99.9 1.7E-23 6E-28 163.1 14.9 169 69-272 4-174 (175)
151 1fnl_A Low affinity immunoglob 99.9 1.6E-23 5.5E-28 163.3 14.7 158 191-371 15-175 (175)
152 3bp6_B Programmed cell death 1 99.9 4.1E-23 1.4E-27 165.1 16.7 174 190-372 9-195 (202)
153 1f97_A Junction adhesion molec 99.9 5.7E-23 2E-27 165.5 17.3 191 73-272 2-207 (212)
154 1f2q_A High affinity immunoglo 99.9 1.7E-23 5.7E-28 163.4 13.4 161 190-373 11-174 (176)
155 1mq8_A ICAM-1, intercellular a 99.9 1.3E-23 4.5E-28 174.9 13.2 264 75-373 2-285 (291)
156 2ny1_B T-cell surface glycopro 99.9 4.6E-23 1.6E-27 162.2 15.7 160 191-374 3-183 (184)
157 3p2t_A Leukocyte immunoglobuli 99.9 4.3E-23 1.5E-27 164.0 15.7 169 194-369 15-195 (196)
158 3mj8_L Stimulatory hamster ant 99.9 2.4E-23 8.2E-28 167.9 14.2 184 73-260 2-202 (213)
159 3mj6_A Junctional adhesion mol 99.9 1.1E-22 3.8E-27 170.1 18.3 210 73-289 6-255 (268)
160 1f2q_A High affinity immunoglo 99.9 1.8E-23 6.1E-28 163.3 12.0 170 71-275 3-174 (176)
161 3d9a_L Light chain of hyhel10 99.9 7.5E-23 2.6E-27 165.0 16.0 177 190-366 8-209 (213)
162 3mj8_L Stimulatory hamster ant 99.9 8.1E-23 2.8E-27 164.8 16.0 175 192-366 9-209 (213)
163 2gi7_A GPVI protein; IG-like d 99.9 8.5E-23 2.9E-27 160.5 15.7 147 194-358 18-168 (184)
164 2r15_A Myomesin-1; sarcomeric 99.9 1.6E-22 5.6E-27 162.9 17.6 170 85-272 15-210 (212)
165 2d3v_A Leukocyte immunoglobuli 99.9 3.6E-23 1.2E-27 164.5 13.3 159 194-358 15-180 (196)
166 1ugn_A LIR1, leukocyte immunog 99.9 9.3E-23 3.2E-27 162.4 15.8 170 194-369 15-197 (198)
167 1uct_A Immunoglobulin alpha FC 99.9 6.6E-23 2.3E-27 165.3 14.7 171 193-374 18-202 (218)
168 3p2t_A Leukocyte immunoglobuli 99.9 3.1E-22 1.1E-26 159.1 18.3 179 70-270 3-194 (196)
169 3sob_L Antibody light chain; b 99.9 8E-23 2.7E-27 167.7 15.1 189 69-260 21-225 (237)
170 4f80_A Butyrophilin subfamily 99.9 1.3E-22 4.5E-27 165.1 16.0 175 191-371 12-214 (226)
171 2d3v_A Leukocyte immunoglobuli 99.9 2.8E-22 9.7E-27 159.3 17.5 167 71-259 4-180 (196)
172 2va4_A NCAM2, N-CAM 2, neural 99.9 2.1E-22 7.1E-27 159.6 16.6 177 72-270 2-191 (192)
173 1uct_A Immunoglobulin alpha FC 99.9 2E-22 6.9E-27 162.5 16.7 184 69-273 6-199 (218)
174 4frw_A Poliovirus receptor-rel 99.9 4.3E-22 1.5E-26 161.0 18.4 191 79-270 6-209 (218)
175 2fbo_J V1V2;, variable region- 99.9 1.4E-22 4.7E-27 167.7 15.5 179 190-368 9-250 (250)
176 1nbq_A JAM, junctional adhesio 99.9 6.3E-23 2.2E-27 164.9 12.8 190 72-270 4-207 (209)
177 1vca_A VCAM-D1,2, human vascul 99.9 5.1E-22 1.7E-26 158.3 17.9 180 75-275 3-200 (202)
178 3ojm_B Fibroblast growth facto 99.9 1.4E-22 4.8E-27 165.5 15.0 191 69-276 12-225 (231)
179 3bp6_B Programmed cell death 1 99.9 2.1E-22 7.2E-27 161.0 15.6 182 74-272 4-193 (202)
180 3grw_A Fibroblast growth facto 99.9 1.5E-22 5E-27 166.6 15.0 190 71-277 10-223 (241)
181 3nl4_L Antigen binding fragmen 99.9 2.2E-22 7.7E-27 162.2 15.5 180 73-255 2-198 (213)
182 4frw_A Poliovirus receptor-rel 99.9 4.9E-22 1.7E-26 160.7 17.3 177 190-370 6-211 (218)
183 3s97_C Contactin-1; carbonic a 99.9 2.9E-22 1E-26 159.9 15.7 178 76-271 12-200 (201)
184 1hng_A CD2; T lymphocyte adhes 99.9 1.1E-22 3.8E-27 158.4 12.8 154 192-369 5-175 (176)
185 1lk3_L 9D7 light chain; antige 99.9 4.8E-22 1.6E-26 159.9 16.9 174 190-363 7-205 (210)
186 2fbo_J V1V2;, variable region- 99.9 2.6E-22 8.8E-27 166.1 15.7 189 75-268 5-246 (250)
187 3auv_A SC-DSFV derived from th 99.9 9.9E-22 3.4E-26 164.9 18.9 185 71-257 11-235 (276)
188 1ugn_A LIR1, leukocyte immunog 99.9 9.4E-22 3.2E-26 156.6 17.8 180 70-271 3-197 (198)
189 2x1w_L Vascular endothelial gr 99.9 4.1E-22 1.4E-26 160.5 15.9 178 79-276 14-211 (213)
190 3d9a_L Light chain of hyhel10 99.9 2.4E-22 8.1E-27 162.1 14.5 184 74-260 3-202 (213)
191 2gi7_A GPVI protein; IG-like d 99.9 2.6E-22 9.1E-27 157.7 14.2 160 69-259 5-168 (184)
192 3ry4_A Low affinity immunoglob 99.9 3.6E-22 1.2E-26 155.0 14.4 155 191-368 12-169 (170)
193 3sbw_C Programmed cell death 1 99.9 2.7E-21 9.1E-26 156.9 20.2 178 190-372 8-213 (222)
194 1jbj_A CD3 epsilon and gamma e 99.9 1.2E-22 4E-27 159.8 11.7 145 193-360 9-179 (186)
195 3uzq_A Anti-dengue MAB 4E11; d 99.9 1.5E-21 5E-26 161.7 18.9 201 75-276 4-248 (253)
196 3ry4_A Low affinity immunoglob 99.9 4.6E-22 1.6E-26 154.3 14.7 165 71-270 3-169 (170)
197 2zg1_A Sialic acid-binding IG- 99.9 8.9E-22 3E-26 158.8 16.7 189 78-269 6-212 (214)
198 2pet_A Lutheran blood group gl 99.9 1.2E-21 4E-26 160.1 17.6 180 189-368 6-229 (231)
199 1lk3_L 9D7 light chain; antige 99.9 5.9E-22 2E-26 159.4 15.2 182 75-260 4-201 (210)
200 1oll_A NK receptor; immune sys 99.9 5.6E-22 1.9E-26 156.4 14.6 164 194-369 14-187 (188)
201 1b6u_A KIR2DL3, P58 killer cel 99.9 1.6E-21 5.3E-26 160.8 17.6 220 70-312 5-241 (257)
202 1qok_A MFE-23 recombinant anti 99.9 8.1E-21 2.8E-25 159.8 21.9 197 74-271 28-267 (282)
203 2ghw_B Anti-SARS SCFV antibody 99.9 4E-21 1.4E-25 158.6 19.6 193 79-271 9-241 (247)
204 3esu_F Antibody 14B7* light ch 99.9 3.9E-21 1.3E-25 159.0 19.6 182 73-256 5-231 (250)
205 1oll_A NK receptor; immune sys 99.9 1E-21 3.5E-26 154.9 15.2 179 71-271 3-187 (188)
206 3r06_A Anti-mouse CD3epsilon a 99.9 9.1E-22 3.1E-26 158.6 14.9 185 73-260 2-202 (213)
207 4f80_A Butyrophilin subfamily 99.9 5.6E-21 1.9E-25 155.4 19.6 187 78-272 10-213 (226)
208 2p1y_A Bispecific alpha/beta T 99.9 9.7E-21 3.3E-25 155.4 21.2 183 74-258 2-222 (238)
209 3s96_B 3B5H10 FAB light chain; 99.9 1.8E-21 6E-26 157.6 16.5 173 192-364 9-214 (218)
210 3bkj_L WO2 IGG2A FAB fragment 99.9 5.7E-22 2E-26 164.1 13.9 188 70-260 32-240 (252)
211 2ny1_B T-cell surface glycopro 99.9 4E-22 1.4E-26 156.8 12.3 173 81-275 4-182 (184)
212 3umt_A SCFV heavy chain and li 99.9 3.7E-21 1.3E-25 159.6 18.7 196 78-274 8-247 (256)
213 1q0x_L FAB 9B1, light chain; a 99.9 2.5E-21 8.4E-26 156.0 17.2 175 190-364 7-209 (212)
214 3juy_B 3B3 single chain varian 99.9 6.5E-21 2.2E-25 158.1 20.2 200 71-270 5-255 (256)
215 3pv7_A B7-H6, IG-like domain-c 99.9 1.8E-21 6.1E-26 160.8 16.4 177 190-368 10-224 (248)
216 3r06_A Anti-mouse CD3epsilon a 99.9 3E-21 1E-25 155.6 16.9 177 190-366 8-209 (213)
217 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.9 5.8E-21 2E-25 158.4 18.6 185 73-259 4-234 (256)
218 2ifg_A High affinity nerve gro 99.9 6.2E-22 2.1E-26 171.8 13.2 179 71-274 157-347 (347)
219 4i0k_A CD276 antigen; immunogl 99.9 8.3E-22 2.8E-26 159.9 13.2 182 193-380 5-216 (222)
220 1za6_B IGG heavy chain; immuno 99.9 3.6E-23 1.2E-27 179.4 5.4 219 25-260 76-330 (344)
221 1f3r_B FV antibody fragment; I 99.9 2.7E-21 9.4E-26 160.4 16.4 180 79-258 7-232 (257)
222 1nqb_A Single-chain antibody f 99.9 5E-21 1.7E-25 158.6 17.6 195 77-272 5-233 (256)
223 3tv3_L PGT128 light chain, IG 99.9 7.5E-22 2.6E-26 158.9 12.2 181 74-260 3-200 (211)
224 3nl4_L Antigen binding fragmen 99.9 3.8E-21 1.3E-25 155.0 16.2 165 190-354 8-198 (213)
225 2znx_A SCFV; fluorotryptohpan, 99.9 8.7E-21 3E-25 155.9 18.2 182 74-257 3-222 (242)
226 2gki_A Nuclease; anti-DNA anti 99.9 1.9E-20 6.4E-25 158.2 20.4 199 77-275 27-275 (291)
227 3mj6_A Junctional adhesion mol 99.9 6.1E-21 2.1E-25 159.5 17.3 180 190-374 12-241 (268)
228 3s96_B 3B5H10 FAB light chain; 99.9 1.9E-21 6.5E-26 157.4 13.6 184 73-260 2-209 (218)
229 3tv3_L PGT128 light chain, IG 99.9 4.7E-21 1.6E-25 154.2 15.8 172 192-365 9-206 (211)
230 1moe_A Anti-CEA MAB T84.66; an 99.9 1.5E-20 5.2E-25 154.4 19.1 181 74-256 3-219 (240)
231 3sbw_C Programmed cell death 1 99.9 1.8E-20 6.1E-25 152.0 19.2 192 76-276 5-215 (222)
232 3bqu_C 3H6 FAB light chain; be 99.9 1.3E-22 4.4E-27 166.0 6.3 187 70-259 21-223 (233)
233 3qib_D 2B4 beta chain; IG doma 99.9 2.1E-21 7E-26 162.5 13.6 211 35-260 3-244 (270)
234 1p6f_A NKP46, natural cytotoxi 99.9 5.1E-21 1.8E-25 156.5 15.5 171 194-376 17-197 (242)
235 1svz_A Immunoglobulin;, single 99.9 1.7E-20 5.7E-25 154.8 18.5 182 74-257 3-228 (247)
236 3sob_L Antibody light chain; b 99.9 6.9E-21 2.4E-25 156.1 15.9 178 190-367 31-233 (237)
237 2xzc_L FAB A.17 light chain; i 99.9 8.4E-21 2.9E-25 153.3 16.2 177 190-366 7-211 (216)
238 2wqr_A IG epsilon chain C regi 99.9 2.6E-23 8.9E-28 178.8 1.4 237 3-260 40-309 (323)
239 3gkz_A Anti-methamphetamine si 99.9 5.6E-20 1.9E-24 152.6 21.1 198 75-272 11-249 (257)
240 2j6e_L IGM, FAB light chain; a 99.9 1.4E-21 4.7E-26 160.0 10.7 186 71-260 19-224 (234)
241 3ux9_B SCFV antibody; five hel 99.9 1.6E-20 5.6E-25 155.7 17.2 178 79-258 9-236 (256)
242 1nfd_E H57 FAB; complex (immun 99.9 8.4E-22 2.9E-26 158.7 9.1 173 190-363 6-205 (212)
243 1nkr_A P58-CL42 KIR; inhibitor 99.9 2.3E-20 7.8E-25 148.8 17.3 156 193-357 17-184 (201)
244 1nkr_A P58-CL42 KIR; inhibitor 99.9 3.8E-20 1.3E-24 147.5 18.6 166 70-257 6-183 (201)
245 1dr9_A B7-1 (CD80), T lymphocy 99.9 2.2E-20 7.4E-25 149.1 17.1 169 192-367 3-198 (201)
246 2xzc_L FAB A.17 light chain; i 99.9 1.4E-20 4.8E-25 152.0 15.8 179 79-260 7-204 (216)
247 1q0x_L FAB 9B1, light chain; a 99.9 4.7E-21 1.6E-25 154.3 12.9 181 75-259 4-203 (212)
248 2gjj_A A21 single-chain antibo 99.9 4.6E-20 1.6E-24 153.5 19.0 185 71-257 4-239 (264)
249 1mju_H Immunoglobulin MS6-12; 99.9 2.8E-20 9.5E-25 151.2 17.2 194 79-275 7-220 (227)
250 1p6f_A NKP46, natural cytotoxi 99.9 1.7E-20 5.9E-25 153.4 15.8 183 69-273 4-192 (242)
251 3b5h_A Cervical EMMPRIN, HAB18 99.9 7.1E-20 2.4E-24 143.9 18.6 161 82-271 8-182 (184)
252 4fmk_A Poliovirus receptor-rel 99.9 4.9E-20 1.7E-24 149.6 18.3 177 190-368 8-215 (225)
253 1c1e_H Catalytic antibody 1E9 99.9 2.1E-20 7.2E-25 151.3 15.9 174 191-367 8-217 (219)
254 1sy6_A T-cell surface glycopro 99.9 1.8E-21 6.1E-26 155.3 9.3 154 195-369 15-203 (204)
255 2if7_A SLAM family member 6; N 99.8 6E-20 2E-24 145.2 17.9 157 190-365 5-187 (193)
256 4dzb_B Vbeta2 (MAIT T cell rec 99.8 1.4E-20 4.8E-25 155.2 14.7 186 74-260 3-220 (246)
257 1mju_H Immunoglobulin MS6-12; 99.8 1E-20 3.5E-25 153.8 13.7 183 190-375 7-222 (227)
258 2fbj_H IGA-kappa J539 FAB (hea 99.8 9.7E-20 3.3E-24 147.3 19.2 182 79-262 7-212 (220)
259 2pet_A Lutheran blood group gl 99.8 1.6E-20 5.5E-25 153.3 14.7 174 78-257 6-211 (231)
260 3bkj_L WO2 IGG2A FAB fragment 99.8 2.4E-20 8.4E-25 154.3 15.9 172 190-361 41-242 (252)
261 3pl6_D MBP peptide / T-cell re 99.8 2E-20 6.9E-25 156.3 15.2 188 71-260 25-241 (268)
262 3pv7_A B7-H6, IG-like domain-c 99.8 2.3E-20 8E-25 154.1 15.3 194 79-276 10-229 (248)
263 4i0k_A CD276 antigen; immunogl 99.8 1E-20 3.6E-25 153.4 12.4 194 80-281 3-215 (222)
264 2vol_A Murine IGG FC; FC, zinc 99.8 3E-21 1E-25 154.7 8.8 165 195-359 15-197 (207)
265 1b6u_A KIR2DL3, P58 killer cel 99.8 7.9E-20 2.7E-24 150.6 17.5 172 193-373 16-204 (257)
266 1hng_A CD2; T lymphocyte adhes 99.8 8.4E-21 2.9E-25 147.7 11.0 158 82-261 6-166 (176)
267 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 8.2E-20 2.8E-24 152.5 17.8 185 71-257 14-254 (268)
268 3nfj_J T cell receptor beta ch 99.8 2.4E-20 8.1E-25 153.7 14.3 186 74-260 3-219 (245)
269 3m8o_H Immunoglobulin A1 heavy 99.8 1.5E-19 5E-24 146.5 18.6 181 79-261 7-213 (221)
270 1nqb_A Single-chain antibody f 99.8 7.9E-20 2.7E-24 151.4 17.3 178 190-372 7-235 (256)
271 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 4.8E-20 1.6E-24 149.5 15.6 181 79-261 7-213 (222)
272 1hxm_B Gamma-delta T-cell rece 99.8 2.8E-19 9.6E-24 146.8 20.0 186 74-261 3-219 (242)
273 3omz_A Human vdelta1 gamma del 99.8 1E-19 3.6E-24 151.1 17.6 185 72-256 2-230 (259)
274 2zg1_A Sialic acid-binding IG- 99.8 7.7E-20 2.6E-24 147.4 16.1 165 190-368 7-213 (214)
275 3bqu_C 3H6 FAB light chain; be 99.8 3.9E-21 1.3E-25 157.2 8.3 170 190-359 30-224 (233)
276 2rgs_A I, IG gamma-2B heavy ch 99.8 3E-21 1E-25 155.9 7.5 166 195-360 23-206 (218)
277 1c1e_H Catalytic antibody 1E9 99.8 9.1E-20 3.1E-24 147.5 16.2 181 78-260 6-209 (219)
278 1nfd_E H57 FAB; complex (immun 99.8 2.8E-21 9.5E-26 155.7 7.2 179 79-260 6-201 (212)
279 1f3r_B FV antibody fragment; I 99.8 3.7E-20 1.3E-24 153.6 14.1 175 193-372 10-247 (257)
280 3q5y_A TCR N15 beta; IG, T cel 99.8 7.7E-20 2.6E-24 150.1 15.8 184 74-259 4-212 (240)
281 1hnf_A CD2; T lymphocyte adhes 99.8 9.1E-20 3.1E-24 141.9 15.4 155 190-368 6-179 (182)
282 1dee_B IGM RF 2A2; FAB-IBP com 99.8 3.7E-19 1.2E-23 144.2 19.5 182 79-261 7-217 (223)
283 4ei6_B Vbeta16 XV19 type II na 99.8 6.9E-20 2.4E-24 150.9 15.2 186 73-260 3-219 (245)
284 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 6.8E-20 2.3E-24 148.6 14.8 173 192-367 9-220 (222)
285 3fku_X Neutralizing antibody F 99.8 1.6E-19 5.6E-24 151.5 17.2 182 74-258 3-234 (280)
286 2j6e_L IGM, FAB light chain; a 99.8 1.9E-20 6.6E-25 153.2 10.5 176 190-365 26-230 (234)
287 2ghw_B Anti-SARS SCFV antibody 99.8 7.5E-20 2.6E-24 150.9 14.0 173 192-369 11-241 (247)
288 3uzq_A Anti-dengue MAB 4E11; d 99.8 6.5E-20 2.2E-24 151.8 13.4 182 190-376 8-250 (253)
289 3eow_R Poliovirus receptor; im 99.8 1.8E-20 6.1E-25 151.9 9.7 178 191-371 7-213 (221)
290 1pz5_B Heavy chain of FAB (SYA 99.8 1.5E-19 5.1E-24 146.3 14.8 181 79-261 7-211 (220)
291 3eow_R Poliovirus receptor; im 99.8 2.8E-20 9.6E-25 150.8 10.5 189 79-274 6-212 (221)
292 1pz5_B Heavy chain of FAB (SYA 99.8 1.2E-19 4.1E-24 146.9 14.2 171 191-366 8-217 (220)
293 3esu_F Antibody 14B7* light ch 99.8 1.8E-19 6E-24 149.0 15.2 163 190-355 11-231 (250)
294 1ccz_A Protein (CD58); LFA-3, 99.8 1.3E-19 4.5E-24 140.0 13.5 148 192-367 4-168 (171)
295 3umt_A SCFV heavy chain and li 99.8 2.8E-19 9.7E-24 148.2 16.4 177 192-373 11-248 (256)
296 3auv_A SC-DSFV derived from th 99.8 4.3E-19 1.5E-23 148.7 17.7 181 190-373 19-257 (276)
297 3d9a_H Heavy chain of hyhel10 99.8 6.8E-20 2.3E-24 147.2 12.3 168 192-364 9-208 (210)
298 1dn0_B IGM-kappa cold agglutin 99.8 3E-18 1E-22 139.6 22.1 182 79-261 7-217 (232)
299 1jbj_A CD3 epsilon and gamma e 99.8 1.1E-20 3.9E-25 148.5 7.4 144 83-260 10-178 (186)
300 2if7_A SLAM family member 6; N 99.8 9.1E-20 3.1E-24 144.2 12.6 167 78-261 4-182 (193)
301 3qib_D 2B4 beta chain; IG doma 99.8 1.5E-19 5.2E-24 151.1 14.6 203 151-362 3-247 (270)
302 2p1y_A Bispecific alpha/beta T 99.8 2.9E-19 9.8E-24 146.5 16.0 164 190-357 7-222 (238)
303 1gsm_A Madcam-1, mucosal addre 99.8 1.9E-18 6.4E-23 135.9 19.8 165 192-361 16-196 (210)
304 4fmk_A Poliovirus receptor-rel 99.8 6.5E-20 2.2E-24 148.9 11.9 190 79-272 8-219 (225)
305 1op3_H FAB 2G12, heavy chain; 99.8 3.7E-19 1.3E-23 144.4 16.2 180 79-260 7-214 (225)
306 1ypz_F T-cell receptor gamma c 99.8 3.4E-19 1.1E-23 145.1 15.9 184 75-260 4-216 (230)
307 3d9a_H Heavy chain of hyhel10 99.8 2.2E-19 7.6E-24 144.2 14.6 179 79-261 7-204 (210)
308 3bae_H WO2 IGG2A FAB fragment 99.8 5.6E-19 1.9E-23 143.7 17.0 181 79-261 7-216 (228)
309 2znx_A SCFV; fluorotryptohpan, 99.8 8E-19 2.7E-23 144.2 18.0 164 190-356 8-222 (242)
310 3liz_H 4C3 monoclonal antibody 99.8 2.7E-19 9.3E-24 147.9 14.5 188 79-269 7-217 (253)
311 2fbj_H IGA-kappa J539 FAB (hea 99.8 6.5E-19 2.2E-23 142.4 16.1 168 192-361 9-212 (220)
312 2wbj_D OB TCR; transmembrane, 99.8 6.5E-19 2.2E-23 147.9 16.6 189 71-260 23-245 (279)
313 1op3_H FAB 2G12, heavy chain; 99.8 4.6E-19 1.6E-23 143.9 14.9 170 192-363 9-218 (225)
314 1qok_A MFE-23 recombinant anti 99.8 1.5E-18 5E-23 145.9 17.8 176 191-372 34-270 (282)
315 3juy_B 3B3 single chain varian 99.8 7.2E-19 2.4E-23 145.8 15.7 165 189-358 12-244 (256)
316 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 3.5E-18 1.2E-22 141.6 19.7 177 190-371 10-249 (256)
317 1dee_B IGM RF 2A2; FAB-IBP com 99.8 2.3E-18 8E-23 139.5 18.2 171 192-364 9-221 (223)
318 1dn0_B IGM-kappa cold agglutin 99.8 1.4E-18 4.8E-23 141.6 16.6 180 192-372 9-229 (232)
319 1i1c_A IGG2A, IG gamma-2A chai 99.8 5.8E-20 2E-24 150.1 8.3 166 195-360 29-212 (239)
320 4dzb_B Vbeta2 (MAIT T cell rec 99.8 1.3E-18 4.3E-23 143.5 16.3 172 190-361 8-222 (246)
321 3gkz_A Anti-methamphetamine si 99.8 2.4E-19 8.1E-24 148.8 11.9 179 192-375 17-254 (257)
322 1sy6_A T-cell surface glycopro 99.8 2.3E-19 7.9E-24 143.0 11.2 153 84-270 15-202 (204)
323 3to4_D NKT vbeta2 (mouse varia 99.8 6.3E-19 2.1E-23 145.8 14.1 181 75-258 4-217 (253)
324 1moe_A Anti-CEA MAB T84.66; an 99.8 2E-18 6.8E-23 141.7 16.7 164 190-356 8-220 (240)
325 3ux9_B SCFV antibody; five hel 99.8 6.4E-18 2.2E-22 140.1 19.9 164 190-357 9-236 (256)
326 3bae_H WO2 IGG2A FAB fragment 99.8 4.8E-19 1.7E-23 144.1 12.5 172 192-366 9-222 (228)
327 2w59_A IGY FCU3-4; immunoglobu 99.8 1.5E-19 5.1E-24 147.2 9.4 166 194-360 24-218 (231)
328 1l6x_A Immunoglobulin gamma-1 99.8 7.9E-20 2.7E-24 146.4 7.5 164 196-359 16-197 (207)
329 2dru_A Chimera of CD48 antigen 99.8 5E-19 1.7E-23 138.0 11.8 159 80-261 7-171 (180)
330 1svz_A Immunoglobulin;, single 99.8 3.6E-18 1.2E-22 140.8 17.5 164 190-356 8-228 (247)
331 3bn9_D E2 FAB heavy chain; ant 99.8 2.4E-18 8.1E-23 141.9 16.0 179 79-259 7-218 (257)
332 1dr9_A B7-1 (CD80), T lymphocy 99.8 1E-18 3.6E-23 139.3 13.5 176 81-267 3-196 (201)
333 2dru_A Chimera of CD48 antigen 99.8 5.5E-18 1.9E-22 132.0 16.8 150 190-366 6-177 (180)
334 2xqy_G A13-D6.3 monoclonal ant 99.8 4.3E-18 1.5E-22 140.9 16.7 180 78-259 12-213 (261)
335 1hnf_A CD2; T lymphocyte adhes 99.8 6.2E-18 2.1E-22 131.5 16.1 160 80-261 7-171 (182)
336 3nl4_H Antigen binding fragmen 99.8 1.6E-18 5.5E-23 139.7 13.2 180 78-261 5-204 (215)
337 1bec_A 14.3.D T cell antigen r 99.8 2.3E-18 8E-23 141.0 14.4 183 75-259 2-211 (238)
338 3knb_B Obscurin-like protein 1 99.8 1.8E-18 6.1E-23 121.9 11.7 96 272-372 12-107 (107)
339 4acp_A IG gamma-1 chain C regi 99.8 1.3E-19 4.4E-24 147.6 6.7 199 157-359 1-218 (240)
340 3omz_A Human vdelta1 gamma del 99.8 5.2E-18 1.8E-22 140.8 16.4 182 190-374 9-254 (259)
341 3m8o_H Immunoglobulin A1 heavy 99.8 4E-18 1.4E-22 138.0 15.2 170 191-361 8-214 (221)
342 3nl4_H Antigen binding fragmen 99.8 1.2E-18 4.1E-23 140.5 12.0 170 191-368 7-212 (215)
343 3nfj_J T cell receptor beta ch 99.8 9.1E-18 3.1E-22 138.2 17.3 174 190-363 8-223 (245)
344 1c5d_H Monoclonal antibody aga 99.8 9.7E-18 3.3E-22 135.0 17.0 179 79-261 7-206 (215)
345 2gjj_A A21 single-chain antibo 99.8 8.9E-18 3.1E-22 139.6 17.3 164 190-356 12-239 (264)
346 1hxm_B Gamma-delta T-cell rece 99.8 5.7E-18 1.9E-22 139.0 15.5 176 190-368 8-227 (242)
347 3liz_H 4C3 monoclonal antibody 99.8 1.8E-18 6.2E-23 142.9 11.8 175 192-369 9-219 (253)
348 2gki_A Nuclease; anti-DNA anti 99.8 7.9E-18 2.7E-22 142.1 15.6 177 192-373 31-275 (291)
349 3q5y_A TCR N15 beta; IG, T cel 99.8 1.9E-17 6.7E-22 135.8 17.3 172 190-362 9-216 (240)
350 1ccz_A Protein (CD58); LFA-3, 99.8 1.3E-18 4.3E-23 134.4 9.5 156 80-261 3-161 (171)
351 4ei6_B Vbeta16 XV19 type II na 99.8 2.1E-17 7.1E-22 136.0 17.3 171 190-361 9-221 (245)
352 3fku_X Neutralizing antibody F 99.8 6.2E-18 2.1E-22 141.9 14.3 179 190-374 7-254 (280)
353 2xqy_G A13-D6.3 monoclonal ant 99.8 1E-17 3.6E-22 138.7 15.1 175 190-367 13-222 (261)
354 3pl6_D MBP peptide / T-cell re 99.8 1.6E-17 5.3E-22 138.7 16.2 172 190-362 33-244 (268)
355 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 2E-17 6.8E-22 138.0 16.7 164 190-356 22-254 (268)
356 3tv3_H PGT128 heavy chain, IG 99.8 6.5E-18 2.2E-22 138.3 13.5 180 79-260 7-226 (239)
357 3qhz_H Human monoclonal antibo 99.8 8E-18 2.7E-22 137.3 13.9 180 79-260 7-218 (232)
358 1oga_E TRBC1, T-cell receptor 99.8 6.5E-18 2.2E-22 139.6 13.3 185 74-260 5-218 (252)
359 2rgs_A I, IG gamma-2B heavy ch 99.8 6.3E-19 2.2E-23 142.2 6.9 180 69-260 6-205 (218)
360 1c5d_H Monoclonal antibody aga 99.8 1.7E-17 5.7E-22 133.6 15.2 170 192-366 9-212 (215)
361 3sob_H Antibody heavy chain, l 99.8 1.9E-17 6.5E-22 137.1 15.8 178 79-260 30-240 (256)
362 3knb_A Titin; IG-like, titin, 99.8 7.5E-18 2.5E-22 117.3 10.9 95 273-370 5-99 (100)
363 3n9g_H FAB fragment of MAB CR4 99.8 2.7E-17 9.1E-22 133.9 16.0 178 79-260 7-214 (230)
364 3u2s_H PG9 heavy chain; greek 99.8 1.5E-17 5.2E-22 136.6 14.3 181 78-260 5-227 (248)
365 3bn9_D E2 FAB heavy chain; ant 99.7 7.3E-18 2.5E-22 139.0 11.7 173 192-366 9-226 (257)
366 3o3u_N Maltose-binding peripla 99.7 2.8E-17 9.5E-22 152.8 16.5 171 190-360 373-567 (581)
367 2vol_A Murine IGG FC; FC, zinc 99.7 3.7E-18 1.3E-22 136.6 9.1 165 84-260 15-197 (207)
368 1gsm_A Madcam-1, mucosal addre 99.7 1.2E-16 4.2E-21 125.6 17.3 153 82-260 17-194 (210)
369 2wbj_D OB TCR; transmembrane, 99.7 5.2E-17 1.8E-21 136.3 15.7 172 190-361 31-247 (279)
370 1ypz_E T cell receptor delta, 99.7 1.3E-16 4.5E-21 127.3 17.0 178 75-259 4-197 (207)
371 2cqv_A MLCK, myosin light chai 99.7 2.2E-17 7.7E-22 118.4 11.3 107 272-383 6-112 (114)
372 3shs_A HOC head outer capsid p 99.7 2.1E-15 7.2E-20 119.4 22.6 244 73-357 3-281 (304)
373 1bec_A 14.3.D T cell antigen r 99.7 1.3E-16 4.4E-21 130.6 16.5 171 190-361 6-214 (238)
374 3iu4_H CHP3 FAB heavy chain; a 99.7 4.6E-17 1.6E-21 135.0 13.6 178 79-260 7-213 (263)
375 3mtr_A N-CAM-1, NCAM-1, neural 99.7 9.3E-17 3.2E-21 129.3 14.6 175 190-372 25-211 (215)
376 3tv3_H PGT128 heavy chain, IG 99.7 4.4E-17 1.5E-21 133.3 12.5 176 192-369 9-236 (239)
377 3mtr_A N-CAM-1, NCAM-1, neural 99.7 2.7E-16 9.2E-21 126.6 17.0 174 69-261 16-199 (215)
378 2aty_A Complement receptor chi 99.7 7.8E-17 2.7E-21 140.9 14.6 165 195-359 180-362 (376)
379 3mlr_H Human monoclonal anti-H 99.7 1.8E-16 6.3E-21 128.5 15.5 178 79-260 7-215 (226)
380 1ypz_F T-cell receptor gamma c 99.7 1.6E-16 5.5E-21 129.2 13.8 169 190-361 8-218 (230)
381 1ow0_A IG alpha-1 chain C regi 99.7 2.6E-18 8.9E-23 138.2 3.1 169 190-360 11-201 (214)
382 3to4_D NKT vbeta2 (mouse varia 99.7 2.4E-16 8.1E-21 130.3 14.9 170 190-359 8-219 (253)
383 1oga_E TRBC1, T-cell receptor 99.7 4.6E-16 1.6E-20 128.4 16.3 171 190-361 10-220 (252)
384 3u1s_H FAB PGT145 heavy chain; 99.7 2.3E-16 7.8E-21 131.2 14.2 182 74-260 26-254 (267)
385 1i1c_A IGG2A, IG gamma-2A chai 99.7 2E-17 7E-22 135.0 7.7 178 71-260 14-211 (239)
386 2v5y_A Receptor-type tyrosine- 99.7 9.4E-16 3.2E-20 146.1 19.9 247 87-371 91-355 (731)
387 1l6x_A Immunoglobulin gamma-1 99.7 1.7E-17 5.7E-22 132.8 6.3 176 73-260 2-197 (207)
388 3kvq_A Vascular endothelial gr 99.7 3.8E-17 1.3E-21 116.1 7.5 103 266-375 3-105 (108)
389 3qhz_H Human monoclonal antibo 99.7 5.9E-17 2E-21 132.1 9.1 175 193-369 10-228 (232)
390 3u2s_H PG9 heavy chain; greek 99.7 1.9E-16 6.6E-21 130.0 11.6 178 191-370 7-238 (248)
391 1g1c_A Immunoglobulin-like dom 99.7 8.1E-16 2.8E-20 107.2 12.7 95 272-370 4-98 (99)
392 1wwb_X Protein (brain derived 99.7 3.5E-16 1.2E-20 109.6 10.8 88 286-373 14-101 (103)
393 3qp3_A Titin; I-SET IG-like, s 99.7 2.3E-16 7.9E-21 110.9 10.0 96 271-371 6-101 (103)
394 3o3u_N Maltose-binding peripla 99.7 4.2E-16 1.4E-20 144.8 14.7 174 80-260 374-566 (581)
395 3n9g_H FAB fragment of MAB CR4 99.7 6E-16 2E-20 125.9 13.1 176 192-370 9-225 (230)
396 2w59_A IGY FCU3-4; immunoglobu 99.7 1.6E-16 5.5E-21 129.2 9.6 173 71-260 11-217 (231)
397 1hxm_A Gamma-delta T-cell rece 99.7 9.1E-16 3.1E-20 124.1 13.5 180 75-258 4-197 (229)
398 2kdg_A Myotilin; immonoglobuli 99.7 5.8E-16 2E-20 108.2 10.0 96 272-371 4-99 (100)
399 4acp_A IG gamma-1 chain C regi 99.7 8.9E-17 3.1E-21 130.8 6.4 197 41-259 1-217 (240)
400 3irg_B Obscurin-like protein 1 99.7 1.1E-15 3.9E-20 108.1 11.2 98 270-372 10-107 (107)
401 1u2h_A APEG-1, aortic preferen 99.7 1.8E-15 6.2E-20 105.4 12.0 95 272-370 4-98 (99)
402 3puc_A Titin; I-SET IG-like do 99.6 1.9E-15 6.4E-20 105.4 11.8 94 272-370 5-98 (99)
403 1wit_A Twitchin 18TH IGSF modu 99.6 4.7E-16 1.6E-20 107.0 8.5 90 273-369 2-93 (93)
404 1fhg_A Telokin; immunoglobulin 99.6 8.1E-16 2.8E-20 116.5 10.5 107 267-377 35-141 (154)
405 2kkq_A Myotilin; unknown funct 99.6 1.8E-15 6.1E-20 108.5 11.4 100 272-375 14-114 (116)
406 1he7_A High affinity nerve gro 99.6 2.5E-15 8.6E-20 107.3 11.6 88 287-374 14-103 (126)
407 2v5y_A Receptor-type tyrosine- 99.6 2.1E-13 7.1E-18 130.0 28.3 225 2-261 104-344 (731)
408 2edj_A Roundabout homolog 2; K 99.6 1.3E-15 4.5E-20 106.4 9.8 93 272-372 7-100 (100)
409 3knb_B Obscurin-like protein 1 99.6 9.1E-16 3.1E-20 108.0 9.0 98 69-183 10-107 (107)
410 1iam_A ICAM-1, CD54, intercell 99.6 1.2E-14 4.2E-19 111.6 15.9 161 75-259 2-166 (185)
411 3mlr_H Human monoclonal anti-H 99.6 1.6E-15 5.4E-20 123.0 11.4 172 192-366 9-222 (226)
412 2dm3_A KIAA0992 protein, palla 99.6 3.8E-16 1.3E-20 111.2 6.8 101 272-376 8-108 (110)
413 2dm2_A Palladin; beta-sandwich 99.6 8.1E-16 2.8E-20 109.5 8.1 101 272-376 7-108 (110)
414 2yr3_A Myosin light chain kina 99.6 8.7E-16 3E-20 107.0 7.9 92 270-369 8-99 (99)
415 3sob_H Antibody heavy chain, l 99.6 2.1E-15 7E-20 124.8 11.3 175 193-370 33-251 (256)
416 3f8u_B Tapasin; endoplasmic re 99.6 1.7E-14 5.9E-19 123.5 16.9 180 77-258 163-388 (401)
417 2e7c_A Myosin-binding protein 99.6 3.4E-15 1.2E-19 107.6 10.0 97 270-372 18-117 (118)
418 1ypz_E T cell receptor delta, 99.6 1.7E-14 5.7E-19 115.1 14.4 161 190-361 8-200 (207)
419 3iu4_H CHP3 FAB heavy chain; a 99.6 3.4E-15 1.1E-19 123.7 10.4 174 192-368 9-222 (263)
420 3bn3_B ICAM-5, intercellular a 99.6 2.2E-14 7.4E-19 111.1 14.2 162 74-259 4-174 (196)
421 2bk8_A Connectin, M1, titin he 99.6 1.2E-14 4E-19 100.8 11.6 89 278-371 6-95 (97)
422 1wwc_A Protein (NT-3 growth fa 99.6 5.9E-15 2E-19 106.4 10.4 102 267-372 2-103 (118)
423 3irg_A Titin; IG-like, titin, 99.6 1.1E-14 3.7E-19 101.7 10.9 93 273-370 5-99 (100)
424 2ckn_A Basic fibroblast growth 99.6 5.2E-15 1.8E-19 102.1 8.7 87 273-369 9-95 (95)
425 1iam_A ICAM-1, CD54, intercell 99.6 1.4E-13 4.8E-18 105.8 17.4 158 190-361 6-169 (185)
426 2dav_A SLOW MYBP-C, myosin-bin 99.6 1.1E-14 3.9E-19 104.0 10.2 102 274-375 8-117 (126)
427 1nct_A Titin; cell adhesion, g 99.6 2.2E-15 7.6E-20 106.1 6.2 93 272-369 13-105 (106)
428 2cry_A KIN of IRRE-like protei 99.6 2.4E-16 8.1E-21 114.5 1.2 109 263-373 4-116 (122)
429 1ow0_A IG alpha-1 chain C regi 99.6 1.8E-16 6.1E-21 127.5 0.5 174 73-260 4-200 (214)
430 2eo9_A Roundabout homolog 1; b 99.6 6E-15 2.1E-19 106.3 8.4 94 272-373 7-101 (118)
431 2yuz_A Myosin-binding protein 99.6 5.3E-15 1.8E-19 102.7 7.6 92 273-373 7-98 (100)
432 2aty_A Complement receptor chi 99.6 3.5E-14 1.2E-18 124.1 14.3 164 84-259 180-361 (376)
433 3knb_A Titin; IG-like, titin, 99.6 7.1E-15 2.4E-19 102.1 7.8 96 70-180 3-98 (100)
434 1waa_A Titin; metal binding pr 99.6 3.1E-14 1.1E-18 97.3 9.9 88 273-370 5-92 (93)
435 3cx2_A Myosin-binding protein 99.6 4.3E-14 1.5E-18 100.0 10.9 98 273-370 4-108 (108)
436 2lu7_A Obscurin-like protein 1 99.5 1.6E-14 5.6E-19 96.3 8.0 80 282-371 5-84 (84)
437 3f8u_B Tapasin; endoplasmic re 99.5 1.6E-13 5.5E-18 117.5 16.2 175 191-366 166-400 (401)
438 3caf_A Fibroblast growth facto 99.5 2.1E-14 7.3E-19 100.1 9.0 83 282-368 17-99 (100)
439 2cqv_A MLCK, myosin light chai 99.5 1.6E-13 5.4E-18 98.2 13.7 100 70-186 5-104 (114)
440 3u1s_H FAB PGT145 heavy chain; 99.5 5.3E-14 1.8E-18 116.9 12.5 175 192-369 32-264 (267)
441 2yuz_A Myosin-binding protein 99.5 3.9E-14 1.3E-18 98.4 9.4 95 69-184 4-98 (100)
442 2cr3_A Basic fibroblast growth 99.5 2.2E-14 7.4E-19 99.7 8.1 84 282-375 12-95 (99)
443 3bfo_A Mucosa-associated lymph 99.5 5.6E-14 1.9E-18 96.0 10.0 85 273-371 3-88 (91)
444 1gxe_A Myosin binding protein 99.5 1.4E-14 4.8E-19 106.6 7.3 85 280-369 25-138 (139)
445 2eys_A NKT15; natural killer T 99.5 4.5E-13 1.6E-17 106.4 16.3 177 74-259 5-188 (210)
446 1x44_A Myosin-binding protein 99.5 6.7E-14 2.3E-18 98.1 9.3 90 276-375 10-101 (103)
447 2e6p_A Obscurin-like protein 1 99.5 3.7E-14 1.3E-18 99.6 7.5 93 273-375 7-102 (104)
448 2edf_A Obscurin; beta-sandwich 99.5 4.9E-14 1.7E-18 98.8 8.1 93 273-375 8-100 (103)
449 3rgv_A YAE62 TCR A chain; TCR, 99.5 3.2E-13 1.1E-17 105.4 13.3 149 75-226 3-154 (200)
450 2edn_A Myosin-binding protein 99.5 5.4E-14 1.8E-18 99.3 7.8 98 274-371 13-117 (118)
451 3shs_A HOC head outer capsid p 99.5 2.3E-12 8E-17 102.2 17.4 143 194-358 13-169 (304)
452 3bn3_B ICAM-5, intercellular a 99.5 4E-13 1.4E-17 104.0 12.8 163 190-359 9-175 (196)
453 1hxm_A Gamma-delta T-cell rece 99.5 1.1E-12 3.7E-17 106.0 15.9 155 190-360 8-200 (229)
454 2bnu_A TCR alpha chain, T-cell 99.5 1.3E-13 4.5E-18 109.2 10.3 138 75-215 3-147 (203)
455 1mq8_A ICAM-1, intercellular a 99.5 5.4E-13 1.8E-17 111.0 14.4 170 190-372 6-188 (291)
456 2edh_A Obscurin; structural ge 99.5 1.8E-13 6.1E-18 97.7 9.7 100 263-373 8-108 (113)
457 3c6l_A TCR 2W20 alpha chain; T 99.2 2.6E-15 8.9E-20 116.2 0.0 143 75-224 3-151 (185)
458 4hwu_A Fibroblast growth facto 99.5 1.4E-13 4.8E-18 94.9 8.8 82 281-373 9-90 (95)
459 4f9p_D 103.2 anti-BTN3A1 antib 99.5 8.5E-12 2.9E-16 97.5 19.3 179 78-257 6-229 (254)
460 1waa_A Titin; metal binding pr 99.5 5.3E-13 1.8E-17 91.1 10.9 90 70-181 3-92 (93)
461 2yuv_A Myosin-binding protein 99.5 4.2E-13 1.4E-17 93.4 10.5 90 273-372 7-97 (100)
462 3gsn_A RA14 TCR alpha chain (T 99.5 2.9E-13 1E-17 105.6 10.7 149 75-226 3-154 (199)
463 2eny_A Obscurin; beta-sandwich 99.5 9E-14 3.1E-18 97.4 6.9 93 274-375 9-102 (104)
464 3m45_A Cell adhesion molecule 99.5 2.5E-13 8.7E-18 96.1 9.3 97 271-372 4-108 (108)
465 3m45_A Cell adhesion molecule 99.5 7.3E-13 2.5E-17 93.7 11.5 104 71-183 5-108 (108)
466 2kkq_A Myotilin; unknown funct 99.5 7.7E-13 2.6E-17 94.7 11.6 102 69-185 12-113 (116)
467 2nw2_A ELS4 TCR alpha chain; T 99.5 2.3E-12 7.8E-17 101.6 15.3 171 79-259 6-182 (200)
468 3s35_X Vascular endothelial gr 99.5 3.3E-13 1.1E-17 97.8 9.8 90 283-374 18-114 (122)
469 2lvc_A Obscurin-like protein 1 99.5 1.6E-13 5.5E-18 93.0 7.3 74 284-367 17-90 (91)
470 1g1c_A Immunoglobulin-like dom 99.5 4.6E-13 1.6E-17 93.1 9.7 96 70-181 3-98 (99)
471 3qp3_A Titin; I-SET IG-like, s 99.5 5.3E-13 1.8E-17 93.5 10.1 96 70-182 6-101 (103)
472 2v9t_A Roundabout homolog 1; s 99.5 1.3E-13 4.4E-18 99.1 7.0 95 271-371 7-110 (117)
473 1gl4_B Basement membrane-speci 99.5 4.1E-13 1.4E-17 93.1 9.3 79 281-369 18-97 (98)
474 2cr6_A KIAA1556 protein, obscu 99.4 8.3E-14 2.8E-18 99.7 5.8 99 267-373 6-105 (115)
475 3kvq_A Vascular endothelial gr 99.4 6.4E-13 2.2E-17 94.0 10.3 99 175-275 3-103 (108)
476 3tjh_C 42F3 alpha; IG MHC, ant 99.4 2E-12 7E-17 102.5 14.1 150 74-226 11-167 (226)
477 3irg_B Obscurin-like protein 1 99.4 3.6E-13 1.2E-17 95.1 9.0 98 69-183 10-107 (107)
478 4f9l_D 20.1 anti-BTN3A1 antibo 99.4 2.6E-12 8.7E-17 101.1 14.2 180 74-255 3-230 (259)
479 2lu7_A Obscurin-like protein 1 99.4 3.6E-13 1.2E-17 89.8 8.1 81 80-182 4-84 (84)
480 2dm2_A Palladin; beta-sandwich 99.4 7.6E-13 2.6E-17 93.9 10.3 101 69-184 5-105 (110)
481 3so5_A LIG-3, leucine-rich rep 99.4 8.1E-13 2.8E-17 94.1 10.2 98 271-368 8-111 (112)
482 2dlt_A Myosin binding protein 99.4 2.6E-13 9E-18 95.6 7.2 90 273-370 8-97 (106)
483 1zxq_A ICAM-2, intercellular a 99.4 3.3E-12 1.1E-16 97.8 13.7 160 73-258 3-172 (192)
484 4ei6_A Valpha1 XV19 type II na 99.4 2.2E-12 7.4E-17 101.2 13.0 149 74-226 4-159 (208)
485 2yuv_A Myosin-binding protein 99.4 2.4E-12 8.2E-17 89.5 12.0 92 71-184 6-98 (100)
486 2e7c_A Myosin-binding protein 99.4 1.1E-12 3.6E-17 94.4 10.4 95 71-183 20-117 (118)
487 2kdg_A Myotilin; immonoglobuli 99.4 7E-13 2.4E-17 92.3 9.2 96 71-182 4-99 (100)
488 2k1m_A Myosin-binding protein 99.4 8E-13 2.8E-17 91.0 9.2 87 274-370 9-95 (95)
489 2eny_A Obscurin; beta-sandwich 99.4 5E-13 1.7E-17 93.5 8.2 96 69-185 5-101 (104)
490 1u2h_A APEG-1, aortic preferen 99.4 7.6E-13 2.6E-17 91.9 9.1 94 71-180 4-97 (99)
491 3puc_A Titin; I-SET IG-like do 99.4 1.1E-12 3.6E-17 91.2 9.8 94 70-180 4-97 (99)
492 3mbe_C I-AG7; T cell receptor, 99.4 3.4E-12 1.2E-16 101.5 13.5 146 74-225 3-154 (229)
493 2edk_A Myosin-binding protein 99.4 8.4E-14 2.9E-18 97.2 3.8 90 273-372 8-101 (101)
494 2dku_A KIAA1556 protein; beta- 99.4 7.3E-13 2.5E-17 92.8 8.6 94 273-376 8-101 (103)
495 1nct_A Titin; cell adhesion, g 99.4 3.4E-13 1.2E-17 94.8 6.8 95 69-180 11-105 (106)
496 2lvc_A Obscurin-like protein 1 99.4 9.9E-13 3.4E-17 89.1 8.7 76 72-164 4-81 (91)
497 2ak4_D SB27 T cell receptor al 99.4 7.8E-13 2.7E-17 105.2 9.4 180 75-258 6-196 (211)
498 1jhl_L IGG1-kappa D11.15 FV (l 99.4 3.3E-12 1.1E-16 90.2 11.6 91 74-166 3-93 (108)
499 2ckn_A Basic fibroblast growth 99.4 1.9E-12 6.3E-17 89.1 10.0 80 189-270 15-94 (95)
500 2edf_A Obscurin; beta-sandwich 99.4 7.6E-13 2.6E-17 92.7 8.1 95 69-185 5-99 (103)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.6e-45 Score=339.98 Aligned_cols=345 Identities=19% Similarity=0.266 Sum_probs=269.1
Q ss_pred CCCCCcchhccccCCCCCCC--CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652 2 IAPSPFDFVNRFQNTSTPWD--PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS 79 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (384)
|.+.+.||+|+..+...... ....+..+|.|.+++.+|+|.|.|.+.+..+..... ..+.......+|.+...+
T Consensus 129 p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~pp~~~~~p 204 (570)
T 3b43_A 129 EPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS----AKLTLSEHEVPPFFDLKP 204 (570)
T ss_dssp SSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE----EEEEEECCCCCCEEEECC
T ss_pred CCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEE----EEEEEcCCCCCCccccCC
Confidence 56789999998765432200 112345789999999999999999998753321110 000111234567777777
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
....+.+|++++|.|.+.+.|.+.+.|++++... ..+.++.+.. ......|.|.+++.+|+|.|
T Consensus 205 ~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y 268 (570)
T 3b43_A 205 VSVDLALGESGTFKCHVTGTAPIKITWAKDNREI--------------RPGGNYKMTL--VENTATLTVLKVTKGDAGQY 268 (570)
T ss_dssp CCBCCBSBSCEEEEEEEESSSCCEEEEEETTEEC--------------CTTSSEEEEE--ETTEEEEEESSBCGGGCEEE
T ss_pred ceeEecCCCeEEEEEEEEECCCCEEEEEECCEEC--------------cCCCcEEEEE--ECCEEEEEEcccCcccCEEE
Confidence 7888999999999999999888899999977542 2234444433 23356899999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE----ecc
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGN 235 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~----~~~ 235 (384)
+|.+.|.. +..+..+.|.|..+|.+.........+.+|+.+.|.|.+.|.|.+.+.|++++..+........ ...
T Consensus 269 ~C~a~N~~-g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~ 347 (570)
T 3b43_A 269 TCYASNVA-GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347 (570)
T ss_dssp EEEEEETT-EEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEE
T ss_pred EEEEECCC-CcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEE
Confidence 99998654 4567778888888887654444445578999999999999999999999999987765544322 235
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEec
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM 315 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~ 315 (384)
.|.|.+++.+|+|.|+|.|.|..|.. +....|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus 348 ~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~ 426 (570)
T 3b43_A 348 VLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR 426 (570)
T ss_dssp EEEEESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECC
T ss_pred EEEECCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECc
Confidence 79999999999999999999998876 67788999999998877777778899999999999999999999999999998
Q ss_pred CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.+.++.+... .....|.|.+++.+|+|.|+|.|.|..|+....+.|.|..+|.
T Consensus 427 ~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~ 479 (570)
T 3b43_A 427 SGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR 479 (570)
T ss_dssp SSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred CCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence 7777665421 1235799999999999999999999999999999999887654
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.3e-43 Score=328.69 Aligned_cols=338 Identities=19% Similarity=0.275 Sum_probs=259.7
Q ss_pred CCCCCcchhccccCCCCC-CC-CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652 2 IAPSPFDFVNRFQNTSTP-WD-PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS 79 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~-~~-~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (384)
|.+.+.|++|+.++.... +. ....+..+|.|.+++.+|+|.|.|.+.+..+..... .......+|.+....
T Consensus 225 p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~-------~~l~V~~~p~~~~~~ 297 (570)
T 3b43_A 225 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-------AQLGVQEPPRFIKKL 297 (570)
T ss_dssp SCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEE-------EEECCBCCCEEEECC
T ss_pred CCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEE-------EEEEeecCCcccccC
Confidence 567899999987664321 00 012345789999999999999999998753321110 001123455555443
Q ss_pred c-ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 80 Q-EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 80 ~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
. ...+.+|+.+.|.|.+.+.|.+.+.|++++... ....++.+.. ......|.|.+++.+|+|.
T Consensus 298 ~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~ 361 (570)
T 3b43_A 298 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI--------------QESSKFRMSF--VESVAVLEMYNLSVEDSGD 361 (570)
T ss_dssp CSBCCEESSCEEEEEEEEESSSSCEEEEEETTEEC--------------CCSSSEEEEE--ETTEEEEEEESCCGGGCEE
T ss_pred CCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEEC--------------CCCCcEEEEE--ECCEEEEEECCCCcccCEE
Confidence 3 345889999999999999999999999987642 2233444433 2345679999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe--c--
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--G-- 234 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~-- 234 (384)
|+|.+.|.. +..+....|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+......... +
T Consensus 362 Y~C~a~N~~-g~~~~~~~l~V~~~P~~~~~-~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~ 439 (570)
T 3b43_A 362 YTCEAHNAA-GSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439 (570)
T ss_dssp EEEEEEBTT-BCCEEEEEECEECCCEECSC-CCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTE
T ss_pred EEEEEEeCC-CEEEEEEEEEecCCCeeecC-CCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCE
Confidence 999998655 45666788888888876643 45567889999999999999999999999999877654443221 1
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEe
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI 314 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~ 314 (384)
..|.|.++..+|+|.|+|.|.|..|.. .....|.|..+|.+...+....+.+|+.+.|.|.+.|.|++.+.|++++..+
T Consensus 440 ~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~ 518 (570)
T 3b43_A 440 TSIHILNVDSADIGEYQCKASNDVGSD-TCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEI 518 (570)
T ss_dssp EEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEEC
T ss_pred EEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEe
Confidence 479999999999999999999999875 6678899999999988888888999999999999999999999999998665
Q ss_pred c-CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 315 M-NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
. .++++.+.. .....+|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 519 ~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~e 570 (570)
T 3b43_A 519 VRESDNIWISY-----SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570 (570)
T ss_dssp CCCTTTEEECC-----CSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred ccCCCeEEEEE-----CCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEeC
Confidence 3 344444321 11356899999999999999999999999999999998753
No 3
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.8e-43 Score=314.62 Aligned_cols=341 Identities=20% Similarity=0.282 Sum_probs=259.4
Q ss_pred CCCCCcchhccccCCCCCCC-CCCCCceEEEEEee-----ecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652 2 IAPSPFDFVNRFQNTSTPWD-PSTQKPIRFFIHEV-----TGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI 75 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~i~~~-----~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 75 (384)
|.+.|.|++|+..+...... .....+.+|.|.++ +.+|+|.|.|.+.....+..... ........+|.+
T Consensus 50 p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~-----~~~l~v~~p~~~ 124 (403)
T 3laf_A 50 GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR-----TAKVMVAGPLRF 124 (403)
T ss_dssp CCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECC-----CEEEEECCCCEE
T ss_pred CCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEE-----EEEEEecCCCcc
Confidence 55679999998766533211 12235667889888 78899999999975321111000 000112235667
Q ss_pred eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD 155 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 155 (384)
...+....+.+|+++.|.|.+.+.+.+.+.|++++...... ....++.... ...|.|.+++.+|
T Consensus 125 ~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~-----------~~~~~~~~~~-----~~~L~i~~~~~~d 188 (403)
T 3laf_A 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPI-----------PGDSRVVVLP-----SGALQISRLQPGD 188 (403)
T ss_dssp CSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCC-----------TTCCSEEECT-----TSCEEECSCCGGG
T ss_pred ccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEecccc-----------CCceEEEEcC-----CceEEEccccccc
Confidence 67777788999999999999988888899999987653110 1112222211 1269999999999
Q ss_pred CeeEEEEEEEccCcceeeeEEEEEecCCccc-----cCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce
Q psy16652 156 AGIYKCEVIISLNNKVSAEVELIVRRPPIIS-----DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS 230 (384)
Q Consensus 156 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-----~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 230 (384)
+|.|+|.+.+..+......+.+.|...|... ...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......
T Consensus 189 ~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~ 268 (403)
T 3laf_A 189 SGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKK 268 (403)
T ss_dssp CEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSS
T ss_pred CEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCce
Confidence 9999999987665556667778777655322 12344567889999999999999999999999998776543332
Q ss_pred --eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 231 --IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 231 --~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
...+..|.|.++..+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus 269 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~ 347 (403)
T 3laf_A 269 YSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWM 347 (403)
T ss_dssp EEEETTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred EEECCccEEEEeCCCHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEE
Confidence 2345689999999999999999999987764 7788999999999888888888899999999999999999999999
Q ss_pred ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
++|..+....+.... ....|.|..++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 348 ~~g~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 348 KNGDVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403 (403)
T ss_dssp ETTEECCCSSSEEEE--------TTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred ECCEECCCCCcEEEe--------cCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence 999998777665543 35789999999999999999999999999999999998764
No 4
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.8e-43 Score=310.86 Aligned_cols=336 Identities=21% Similarity=0.274 Sum_probs=238.9
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEee-ecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEV-TGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
|.+.+.|++|+.++......+....+++|.|.++ +.+|+|.|.|.+.+..+...... ..+.....++.......
T Consensus 36 P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~-----~~l~v~~~~~~~~~~~~ 110 (384)
T 3kld_A 36 PKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSRE-----AKLQFAYLENFKTRTRS 110 (384)
T ss_dssp SCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-----EEEEEEEECCCSCCCCC
T ss_pred CCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecc-----eEEEEecccccccCCCC
Confidence 6788999999877754432333344567888876 88999999999988643211000 00000001111112234
Q ss_pred ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+.+|+.+.|.|... +.+.+.+.|++++.... .+.+..+.. ....|.|.+++.+|+|.|
T Consensus 111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~--------------~~~~~~~~~----~~~~L~I~~v~~~D~G~Y 172 (384)
T 3kld_A 111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY--------------QDNRRFVSQ----ETGNLYIAKVEKSDVGNY 172 (384)
T ss_dssp CEEEEETCCEEECCCCCSEESCEEEEEEETTEECC--------------CSSSEEECT----TTCCEEESSCCGGGCEEE
T ss_pred ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE--------------eeccEEEEc----CCCcEEEeecCHHHCceE
Confidence 45688999999999764 34567899999764311 112211111 123599999999999999
Q ss_pred EEEEEEccCcce--eeeEEEEEe-------cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC-cccccCc
Q psy16652 160 KCEVIISLNNKV--SAEVELIVR-------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS-AALSTGG 229 (384)
Q Consensus 160 ~C~~~~~~~~~~--~~~~~l~v~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~~~~~ 229 (384)
+|.+.|..+... .....+.+. .+|.+....+....+.+|+.+.|.|.+.|.|.|.+.|++++. .+.....
T Consensus 173 ~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~ 252 (384)
T 3kld_A 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKAR 252 (384)
T ss_dssp EEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCE
T ss_pred EEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccce
Confidence 999997654321 111222221 122222223455678899999999999999999999999654 3332222
Q ss_pred eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE
Q psy16652 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309 (384)
Q Consensus 230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 309 (384)
....+..|.|.+++.+|+|.|+|.|.|..|.. .....|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++
T Consensus 253 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k 331 (384)
T 3kld_A 253 RHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK 331 (384)
T ss_dssp ECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred ecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEE
Confidence 22335689999999999999999999998875 66778889999988877777888999999999999999999999999
Q ss_pred CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+|..+....++.+ ...+|.|..++.+|+|.|+|.|.|..|...++..|.|..
T Consensus 332 ~g~~l~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 332 NGDPLLTRDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp TTEECCCBTTEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCEECCCCccEEE---------eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 9999977666553 256899999999999999999999999999999998864
No 5
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1e-42 Score=307.53 Aligned_cols=334 Identities=21% Similarity=0.224 Sum_probs=248.3
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeec-ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe-eeeC
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTG-EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI-SYIS 79 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 79 (384)
|.+.|.|++|+..+......+....+.+|.|.+++. +|+|.|.|.+.+..+...... ..+... ..|.+ ...+
T Consensus 35 p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~-----~~l~v~-~~~~~~~~~~ 108 (382)
T 1cs6_A 35 PPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSRE-----ASLRFG-FLQEFSAEER 108 (382)
T ss_dssp SCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCC-----EEEEEE-EECCCCSSCC
T ss_pred CCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecc-----eEEEee-ccccccccCC
Confidence 567899999987766544334444567899999997 999999999987533211000 000000 11111 1224
Q ss_pred cceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 80 QEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
....+.+|++++|.|... +.+.+.+.|++++.... . ..+.+..... ....|.|.+++.+|+|.
T Consensus 109 ~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~-----~-------~~~~~~~~~~----~~~~L~i~~~~~~d~G~ 172 (382)
T 1cs6_A 109 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-----I-------PADGRRFVSQ----TTGNLYIAKTEASDLGN 172 (382)
T ss_dssp CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB-----C-------CCCSSEEECT----TTCCEEESSCCGGGCEE
T ss_pred CceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc-----c-------ccCceEEEec----CceEEEEEeeCcccCee
Confidence 456689999999999863 45678999999876421 0 1112222211 12369999999999999
Q ss_pred EEEEEEEccCc----ceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC
Q psy16652 159 YKCEVIISLNN----KVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228 (384)
Q Consensus 159 Y~C~~~~~~~~----~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~ 228 (384)
|+|.+.+..+. ..+..+.|.+.. +|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 173 Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-- 250 (382)
T 1cs6_A 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-- 250 (382)
T ss_dssp EEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--
T ss_pred EEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--
Confidence 99999876532 113334555432 233333334567789999999999999999999999998876543
Q ss_pred ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
........|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus 251 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~ 329 (382)
T 1cs6_A 251 KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329 (382)
T ss_dssp CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred EEecCCcEEEEccCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence 223356689999999999999999999988774 7788999999999888777788899999999999999999999999
Q ss_pred ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
++|..+....++.+ ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 330 ~~g~~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 330 RDGQPLASQNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp ETTEECCCCSSEEE---------ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred ECCEECCCCceEEE---------ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 99999987766554 25689999999999999999999999999999999886
No 6
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=306.20 Aligned_cols=333 Identities=14% Similarity=0.173 Sum_probs=220.2
Q ss_pred CCCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652 1 FIAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS 79 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (384)
+|.+.|.|++++....... .+.......+|.|.+++.+|+|.|+|.+.+..+.....+ .+ ....+|.+. ..
T Consensus 75 ~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~------~l-~V~~~p~~~-~~ 146 (423)
T 3qs7_E 75 PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF------TV-SIRNTLLYT-LR 146 (423)
T ss_dssp CSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE------EE-EEC-----C-EE
T ss_pred CCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE------EE-EEecCcccc-cc
Confidence 4778899999875543322 121223346899999999999999999987633221100 00 011233332 12
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
.+..+..|+.+.|.|.+.+.|.+.+.|++++...... .......+... . .. ++..|+|.|
T Consensus 147 ~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~-----------~~~~~~~~~~~----~--~~---l~~~d~G~Y 206 (423)
T 3qs7_E 147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESC-----------KEESPAVVKKE----E--KV---LHELFGTDI 206 (423)
T ss_dssp EEEEEECSSSSCEEEEEEESSCCEEEEEEC------------------------CEEEC----C--SE---ECCCCSSCE
T ss_pred CCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccc-----------ccccccccccc----c--eE---EecccCeEE
Confidence 3334567899999999999999999999977531100 00000000000 0 01 157899999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCc---------
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGG--------- 229 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~--------- 229 (384)
+|.|.|..+......+.|.|..+|... +....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.....
T Consensus 207 ~C~A~N~~G~~~~~~~~l~V~~~p~~~---~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~ 283 (423)
T 3qs7_E 207 RCCARNELGRECTRLFTIDLNQTPQTT---LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN 283 (423)
T ss_dssp EEEEECSSCEEEEECEEEESSSCCCSS---TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT
T ss_pred EEEEEcCCCCcceeeEEEEEecCCccC---CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC
Confidence 999997766555555777777666543 44677899999999999988 66789999999987644321
Q ss_pred -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEE
Q psy16652 230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIV 306 (384)
Q Consensus 230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~ 306 (384)
.......|.|.+++.+|+|.|+|.|.|. .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|+|.|.+.
T Consensus 284 ~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~ 359 (423)
T 3qs7_E 284 RTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359 (423)
T ss_dssp TEEEEEEEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEE
T ss_pred ceeEEEEEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEE
Confidence 1223457999999999999999999987 47788899999998776553 4567889999999999999999999
Q ss_pred EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
|+++|..+..+.+... ....+.+.....+|+|.|+|.|.|..|+...++.|.|...|..|..
T Consensus 360 W~k~g~~l~~~~~~~~---------~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~ 421 (423)
T 3qs7_E 360 WTFSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH 421 (423)
T ss_dssp EEETTEEEECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred EEECCEECCCcccccc---------CCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence 9999999965532100 1112223556678999999999999999999999999999877653
No 7
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=1.8e-40 Score=280.97 Aligned_cols=278 Identities=22% Similarity=0.361 Sum_probs=231.0
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++... ....++.+.. ......|.|.
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~ 66 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREI--------------RPGGNYKMTL--VENTATLTVL 66 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEEC--------------CSSSSEEEEE--ETTEEEEEES
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEEC--------------cCCCcEEEEE--cCCEEEEEEe
Confidence 46888999899999999999999999998888899999977542 2233444443 2345789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+++.+|+|.|+|.+.+.. +..+..+.|.|..+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 67 ~v~~~d~G~Y~C~~~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 145 (284)
T 2rik_A 67 KVTKGDAGQYTCYASNVA-GKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK 145 (284)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSS
T ss_pred cCCcccCEEEEEEEEECC-ceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCc
Confidence 999999999999998654 4467788899988887665556667789999999999999999999999999987765543
Q ss_pred eeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652 230 SIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 230 ~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
... ....|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+
T Consensus 146 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v 224 (284)
T 2rik_A 146 FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV 224 (284)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred EEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEE
Confidence 322 23579999999999999999999988865 7788999999998877777777889999999999999999999
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.|++++..+....++.+... .....|.|.+++.+|.|.|+|.|.|..|+...++.|.|++
T Consensus 225 ~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 284 (284)
T 2rik_A 225 SWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284 (284)
T ss_dssp EEEETTEEECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred EEEECCEECcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence 99999999988777665431 1246799999999999999999999999999999998864
No 8
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.7e-41 Score=300.40 Aligned_cols=331 Identities=19% Similarity=0.273 Sum_probs=244.4
Q ss_pred CCCCCcchh-ccccCCCCCCCCCCCCceEEEEEeeecce------EEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCC
Q psy16652 2 IAPSPFDFV-NRFQNTSTPWDPSTQKPIRFFIHEVTGEK------VTSVILLFKMSVAGPSIIVALSFLISLASSQRTPT 74 (384)
Q Consensus 2 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d------~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 74 (384)
|.+.|.|++ |+..+......+....+++|.|.+++.+| +|.|.|.+.+..+..... .+. .....+|.
T Consensus 32 p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~-----~~~-v~v~~~p~ 105 (388)
T 2v5m_A 32 PMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISR-----DVH-VRAVVAQY 105 (388)
T ss_dssp SCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECC-----CEE-EEEECCCC
T ss_pred CCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEec-----ceE-EEEccccc
Confidence 678899999 65544432212223456789999999997 999999998764321100 000 01123455
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+...+....+.+|++++|.|.+.+.+ .+.+.|++++...... . .....++.+..+ ..|.|.++
T Consensus 106 ~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~-------~--~~~~~~~~~~~~-----~~L~i~~v 171 (388)
T 2v5m_A 106 YEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP-------G--AEYDGKYLVLPS-----GELHIREV 171 (388)
T ss_dssp CCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECS-------S--SCBTTTEEECTT-----SCEEESSC
T ss_pred cccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccccc-------c--cCCCCcEEEccC-----CcEEEecC
Confidence 55566777899999999999997754 2789999987642100 0 112344444321 25999999
Q ss_pred CCCCC-eeEEEEEEEccCccee---eeEEEEEecC-----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 152 QETDA-GIYKCEVIISLNNKVS---AEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 152 ~~~d~-G~Y~C~~~~~~~~~~~---~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
+.+|+ |.|+|.+.+..++... ....|.|..+ |...........+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 172 ~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~ 251 (388)
T 2v5m_A 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIE 251 (388)
T ss_dssp CGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECT
T ss_pred CccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCC
Confidence 99999 9999999876544322 1234555544 2222222344568899999999999999999999999764
Q ss_pred ccc------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEE
Q psy16652 223 AAL------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECH 296 (384)
Q Consensus 223 ~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~ 296 (384)
... ........+..|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~ 330 (388)
T 2v5m_A 252 GTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330 (388)
T ss_dssp TSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEE
T ss_pred CCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eEEEEEEEeCCCccccCCCcEEecCCCCEEEEEE
Confidence 432 122233456789999999999999999999998875 7788899999998888777788899999999999
Q ss_pred EeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 297 ~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+.|.|.|.+.|+++|..+... ...|.|.+++.+|+|.|+|.|.|..|+...++.|.|
T Consensus 331 ~~g~p~p~i~W~~~g~~i~~~---------------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 331 YTGNPIKTVSWMKDGKAIGHS---------------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEECCCEEEEEETTEECSCC---------------SSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred eccccCCeEEEEECCEECccC---------------CCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 999999999999999987532 457999999999999999999999999999999886
No 9
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=8.9e-42 Score=311.10 Aligned_cols=326 Identities=13% Similarity=0.174 Sum_probs=229.3
Q ss_pred CCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 3 APSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
.++|.|++|++.....+ ++.......+|.|.+++.+|+|.|+|.+.+........ ..+... +..+.....+
T Consensus 77 ~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~------~~v~v~--~~~~~~~~~p 148 (527)
T 3qs9_E 77 NISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL------FTVSIR--NTLLYTLRRP 148 (527)
T ss_dssp SCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEE------EEEEEC-------CEEEE
T ss_pred ceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEE------EEEEEC--CceeeccCCC
Confidence 47899999988755444 33223444679999999999999999998753321110 000001 1111122233
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
.....|+.+.|.|.+.+.|.+.+.|++++.... ++.. . ...........++..|+|.|+|
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~-----------------~~~~-~--~~~~~~~~~~~~~~~d~G~Y~C 208 (527)
T 3qs9_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGE-----------------SCKE-E--SPAVVKKEEKVLHELFGTDIRC 208 (527)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC---------------------------------CEEECCSEECCCCSSCEEE
T ss_pred cEEecCCceEEEEEEceecCCeEEEEECCCCCc-----------------cccc-c--CCcEEEEeeeeccccCCEEEEE
Confidence 345678889999999999999999999765310 0000 0 0111122334456899999999
Q ss_pred EEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCce----------
Q psy16652 162 EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGS---------- 230 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~---------- 230 (384)
.+.|..+......+.|.|..+|.. .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......
T Consensus 209 ~A~N~~G~~~~~~~~l~V~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~ 285 (527)
T 3qs9_E 209 CARNELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285 (527)
T ss_dssp EEECSSCEEEEECEEEESSSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTE
T ss_pred EEEeCCCcccceEEEEEEeccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcc
Confidence 999776655555577888766655 25567889999999999996 8899999999999876543211
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
......|.|.+++.+|+|.|+|.|.|. .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|+|.|.+.|+
T Consensus 286 ~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~ 361 (527)
T 3qs9_E 286 MIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWT 361 (527)
T ss_dssp EEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred eeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEE
Confidence 223456999999999999999999987 46778888988888765443 356778999999999999999999999
Q ss_pred ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
++|..+....+... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|
T Consensus 362 k~g~~l~~~~~~~~---------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P 416 (527)
T 3qs9_E 362 FSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP 416 (527)
T ss_dssp ETTEEEECBCCBCS---------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC
T ss_pred ECCEECcCCccccc---------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC
Confidence 99999965544211 35679999999999999999999999999999999988665
No 10
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=9.2e-41 Score=297.23 Aligned_cols=339 Identities=18% Similarity=0.227 Sum_probs=244.8
Q ss_pred CCCCCcchhccccCCCCC--CCCCCCCceEEEEE----eeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652 2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIH----EVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI 75 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~----~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 75 (384)
|.+.|.|++|+..+.... .......+.+|.|. +++.+|+|.|.|.+.+..+...... ..+.....+...
T Consensus 45 p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~-----~~l~V~~~p~~~ 119 (404)
T 3p3y_A 45 PAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-----IRLQVSKSPLWP 119 (404)
T ss_dssp SCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEE-----EEEEECCCCCCC
T ss_pred CCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeee-----EEEEEeccCccc
Confidence 677899999976543221 11222356677775 8999999999999987533221000 000111122222
Q ss_pred eeeCcceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 76 SYISQEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
........+.+|++++|.|.+ .+.+.+.+.|++++.... ..+.++.... ...|.|.+++..
T Consensus 120 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~-----~~~l~i~~v~~~ 181 (404)
T 3p3y_A 120 KENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI-------------TQDKRVSQGH-----NGDLYFSNVMLQ 181 (404)
T ss_dssp CCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBC-------------CCCSSEEECT-----TSCEEESSCCSG
T ss_pred cCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcccc-------------CCCCcEEEcC-----CCcEEEEeeeec
Confidence 233445678999999999998 667788999999764321 1122332222 125999999999
Q ss_pred C-CeeEEEEEEEccCcce--eeeEEEEEecC-------CccccC--CCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 155 D-AGIYKCEVIISLNNKV--SAEVELIVRRP-------PIISDN--STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 155 d-~G~Y~C~~~~~~~~~~--~~~~~l~v~~~-------~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
| +|.|+|.+.+..+... ...+.+.+... |.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 182 d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~ 261 (404)
T 3p3y_A 182 DMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261 (404)
T ss_dssp GGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTB
T ss_pred cCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCE
Confidence 9 5999999987655432 23345555432 222111 1234568899999999999999999999999998
Q ss_pred cccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652 223 AALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP 301 (384)
Q Consensus 223 ~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 301 (384)
.+....... ..+..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|+|
T Consensus 262 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p 340 (404)
T 3p3y_A 262 DLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340 (404)
T ss_dssp CCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES
T ss_pred ECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccC
Confidence 776544322 235689999999999999999999988874 778999999999988888888889999999999999999
Q ss_pred CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 302 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.+.+.|+++|..+.......... ..+..|.|.+++.+|+|.|+|.|.|..|....++.|.|.+
T Consensus 341 ~p~v~W~~~g~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 341 KPTVQWMVNGEPLQSAPPNPNRE------VAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CCEEEEEETTEEGGGSCCCTTEE------EETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred CCceEEEECCEecCCCCCCceEE------ecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999987654211111 1356899999999999999999999999999999998865
No 11
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.3e-40 Score=292.75 Aligned_cols=339 Identities=15% Similarity=0.186 Sum_probs=241.5
Q ss_pred CCCCCcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 2 IAPSPFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
|.+.|.|++|+..+.... .......+.+|.|.+++.+|+|.|.|.+.+..+...... ..+... ....|.+ .+.
T Consensus 35 p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~---~~l~v~-~~~~p~~--~~~ 108 (395)
T 1bih_A 35 QGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV---ISFRKT-YLIASPA--KTH 108 (395)
T ss_dssp SSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCC---EEEEEE-EEECCCC--EEE
T ss_pred CCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEE---EEEEEE-EeecCCc--CCc
Confidence 567899999986655332 111234567899999999999999999987532211000 000000 1112333 344
Q ss_pred ceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe--
Q psy16652 81 EQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG-- 157 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-- 157 (384)
...+.+|+.+.|.|.+ .+.|.+.+.|++++...... .. ......++....+ ..|.|.+++.+|+|
T Consensus 109 ~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~---~~----~~~~~~~~~~~~~-----~~L~i~~v~~~d~G~~ 176 (395)
T 1bih_A 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPN---AD----VTDFDRRITAGPD-----GNLYFTIVTKEDVSDI 176 (395)
T ss_dssp EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGG---GC----CCCCCTTEEECTT-----SCEEEEEECGGGCCSS
T ss_pred ceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcc---cc----cccccccEEEcCC-----CcEEEEEEeeccCCCc
Confidence 5668899999999996 66788899999987321100 00 0011234433321 25999999999999
Q ss_pred -eEEEEEEEccCcceeeeEE--EEEecCCc-------cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 158 -IYKCEVIISLNNKVSAEVE--LIVRRPPI-------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 158 -~Y~C~~~~~~~~~~~~~~~--l~v~~~~~-------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
.|+|.+.+..+........ +.+...+. .+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus 177 ~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~ 256 (395)
T 1bih_A 177 YKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGN 256 (395)
T ss_dssp EEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCC
T ss_pred eEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCC
Confidence 9999998665543221111 11111110 0000134567899999999999999999999999998776543
Q ss_pred CceeE------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEEecc
Q psy16652 228 GGSIY------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHVEAY 300 (384)
Q Consensus 228 ~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~ 300 (384)
..... .+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.
T Consensus 257 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~ 336 (395)
T 1bih_A 257 PEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGL 336 (395)
T ss_dssp TTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEE
T ss_pred CceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcc
Confidence 22111 22379999999999999999999998887566899999999998887766 678899999999999999
Q ss_pred CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 301 PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 301 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
|.|.+.|+++|..+..+ ++.+ ....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 337 p~p~v~W~~~g~~~~~~-~~~~---------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 337 PAPNVVWSHNAKPLSGG-RATV---------TDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp SCCCCEEEETTEECCSS-SEEE---------ETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCCeeEEEECCEECCCC-ceEE---------ECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 99999999999998654 4333 2448999999999999999999999999999999887
No 12
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.2e-40 Score=303.43 Aligned_cols=333 Identities=16% Similarity=0.166 Sum_probs=247.2
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK 84 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 84 (384)
.+.|++|+.++. ......+|.|.+++.+|+|.|.|.+.+...... .+. ...+|.+...+....+
T Consensus 63 ~v~W~~~~~~~~------~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~---------~l~-V~~p~~~~~~~~~~~v 126 (524)
T 2ec8_A 63 FVKWTFEILDET------NENKQNEWITEKAEATNTGKYTCTNKHGLSNSI---------YVF-VRDPAKLFLVDRSLYG 126 (524)
T ss_dssp EEEEEEESSSCC------EEECSSEEEESSCCSTTCEEEEEEETTSCEEEE---------EEE-CCCSSCSBCCCCCCCE
T ss_pred eEEEcCCCcccc------ccCccceEEEcccchhhCEEEEEeecCCcceEE---------EEE-ECCCCcccccccceEE
Confidence 578999987552 345678999999999999999999876210000 001 1134444466777789
Q ss_pred eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe-eEEEEE
Q psy16652 85 DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG-IYKCEV 163 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~ 163 (384)
.+|++++|.|.+.+.+.+.+.|++.+... +..+.++.+... ..|.|.+++.+|+| .|+|.+
T Consensus 127 ~~G~~v~l~C~~~~~~~~~v~W~~~~g~~-------------l~~~~~~~~~~~-----~~L~i~~~~~~d~G~~Y~C~a 188 (524)
T 2ec8_A 127 KEDNDTLVRCPLTDPEVTNYSLKGCQGKP-------------LPKDLRFIPDPK-----AGIMIKSVKRAYHRLCLHCSV 188 (524)
T ss_dssp ETTSCEEECCCBSCCCCSCEEEECSSSCC-------------CCSSCEEEEETT-----TEEEEESCCGGGTTCEEEEEE
T ss_pred EcCCeEEEECcCCCCccceEEEEccCCcC-------------cCCCCceeECCC-----ccEEEeccchhhCCceEEEEE
Confidence 99999999999988666899999844321 112234433321 26999999999999 999999
Q ss_pred EEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcc--cccCc-------
Q psy16652 164 IISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA--LSTGG------- 229 (384)
Q Consensus 164 ~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~--~~~~~------- 229 (384)
.+..+...+..+.|.|. .+|.+.. .+....+.+|+.+.|.|.+.+.|.+. +.|++++..+ .....
T Consensus 189 ~n~~~~~~s~~~~l~V~~~~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~ 267 (524)
T 2ec8_A 189 DQEGKSVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267 (524)
T ss_dssp C----CCCCCCEECCEECCCCSCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSS
T ss_pred EECCceEEEEEEEEEEEeCCCCCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCC
Confidence 87655445567788876 4555543 34556799999999999999888876 9999999873 22111
Q ss_pred eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC---CcccccCCcEEEEEEEeccCCCe-E
Q psy16652 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPPA-I 305 (384)
Q Consensus 230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~-v 305 (384)
.......|.|.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.|. +
T Consensus 268 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v 346 (524)
T 2ec8_A 268 NYERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQ 346 (524)
T ss_dssp CEEEEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEE
T ss_pred ccceEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEE
Confidence 22345689999999999999999999988876 5688999999998876543 46788999999999999999998 9
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.|+++|..+.............+.......|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 347 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~ 414 (524)
T 2ec8_A 347 QWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE 414 (524)
T ss_dssp EEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEE
T ss_pred EEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCe
Confidence 99999998876552111111111111356899999999999999999999999999999999987764
No 13
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=1.1e-38 Score=271.00 Aligned_cols=277 Identities=22% Similarity=0.373 Sum_probs=219.2
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEE-eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMK-MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
++.+...|....+.+|++++|.|.+.+.+ .+.+.|++ ++.... ....++.+... ......|.|.
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-------------~~~~~~~~~~~-~~~~~~L~i~ 67 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------------PNQQRISVVWN-DDDSSTLTIY 67 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCC-------------SSCSSEEEEEE-ETTEEEEEEC
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECc-------------cCCceEEEEEc-CCCeEEEEEe
Confidence 57788899999999999999999998865 68999999 443211 11234433321 2345689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~ 146 (291)
T 1qz1_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (291)
T ss_dssp SCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEEC-CSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCC
T ss_pred cCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCC-CCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCC
Confidence 999999999999999776666677888888877766533 4556789999999999999989999999999887653322
Q ss_pred ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCC
Q psy16652 230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPP 303 (384)
Q Consensus 230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~ 303 (384)
....+..|.|.++..+|+|.|+|.+.|..+ ......+.+.|..+|.+..... ...+..|+.+.|.|.+.|.|.|
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p 226 (291)
T 1qz1_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226 (291)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC
T ss_pred ceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCC
Confidence 123456899999999999999999998653 3345677888888888776543 3467889999999999999999
Q ss_pred eEEEEECCEEecCCC----ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 304 AIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 304 ~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.+.|+++|..+.... ++... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 227 ~i~W~~~g~~~~~~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 227 TMSWTKDGEPIENEEEDDEKHIFS-------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEEEETTEECCCC--CCSSEEEC-------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cEEEEECCEECcCCCCCCcceEEc-------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 999999999987664 22221 1356899999999999999999999999999999999875
No 14
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=273.08 Aligned_cols=280 Identities=24% Similarity=0.375 Sum_probs=217.4
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+.+..+.+|++++|.|.+.+.+. .+.|+++++.. .....++.+.. ......|.|.+
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~-------------~~~~~~~~~~~--~~~~~~L~i~~ 66 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK-------------IISTQRVVVQK--EGVRSRLTIYN 66 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCB-------------CCCBTTEEEEE--ETTEEEEEECS
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcC-------------ccCCCcEEEec--CCCEEEEEEcc
Confidence 5678888899999999999999999988765 89999944321 12234555444 33456899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG- 229 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~- 229 (384)
++.+|+|.|+|.+.+..+...+..+.|.|..++.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 67 ~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 145 (291)
T 2wim_A 67 ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDN 145 (291)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSC-CCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCS
T ss_pred CCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeC-CCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCc
Confidence 99999999999998766555567778888877765533 4556789999999999999989999999999876654221
Q ss_pred --eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCe
Q psy16652 230 --SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPA 304 (384)
Q Consensus 230 --~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~ 304 (384)
....+..|.|.++..+|+|.|+|.+.+..+.. ....+.+.+..+|.+...+. ...+..|+.+.|.|.+.|.|.|.
T Consensus 146 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~ 225 (291)
T 2wim_A 146 RFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225 (291)
T ss_dssp SEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCE
T ss_pred eEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCe
Confidence 12235689999999999999999999976443 35667888888887765443 35678899999999999999999
Q ss_pred EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG 374 (384)
Q Consensus 305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 374 (384)
+.|+++|..+..+.++.+.. ....|.|.+++.+|+|.|+|.|.|..|..++++.|.|..+++.
T Consensus 226 v~W~~~g~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~ 288 (291)
T 2wim_A 226 ISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288 (291)
T ss_dssp EEEEETTEECCCTTTEEECS-------TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC------
T ss_pred EEEEECCEECcCCccEEEcC-------CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEeccc
Confidence 99999999998777655432 3578999999999999999999999999999999999988753
No 15
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=3.8e-39 Score=303.50 Aligned_cols=316 Identities=18% Similarity=0.224 Sum_probs=238.3
Q ss_pred CCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCccee
Q psy16652 4 PSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQI 83 (384)
Q Consensus 4 ~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 83 (384)
+.+.|++|+..+....-......+.+|.|.+++.+|+|.|.|.+.+..+..... ...+.....++.....+....
T Consensus 318 ~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~-----~~~l~V~~~p~~~~~~~~~~~ 392 (642)
T 1e07_A 318 TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSD-----PVILNVLYGPDDPTISPSYTY 392 (642)
T ss_pred ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCccee-----eEEEEEEcCCCCCeecCCceE
Confidence 579999997665422211112346799999999999999999998764321110 001111122223344566677
Q ss_pred eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 84 KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
+.+|+.++|.|.+.+.|.+.+.|++++.... ....|.|.+++.+|+|.|+|.+
T Consensus 393 ~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~---------------------------~~~~L~i~~~~~~d~G~Y~C~a 445 (642)
T 1e07_A 393 YRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ---------------------------HTQELFISNITEKNSGLYTCQA 445 (642)
T ss_pred ecCCCcEEEEEEcCccCCCeEEEEECCEEcC---------------------------CCceEEEccCChhhCeEEEEEE
Confidence 8999999999999988888999999775310 1125999999999999999999
Q ss_pred EEccCcc-eeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEE
Q psy16652 164 IISLNNK-VSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL 237 (384)
Q Consensus 164 ~~~~~~~-~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l 237 (384)
.|..+.. .+..+.|.|..+ |.+. ......+.+|+.+.|.|.+.+ |.+.+.|++++..+........ .+..|
T Consensus 446 ~n~~g~~~~s~~~~v~v~~~~~~p~i~--~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L 522 (642)
T 1e07_A 446 NNSASGHSRTTVKTITVSAELPKPSIS--SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTL 522 (642)
T ss_pred EcCCCCCcccceEEEEEeccCCCceEe--cCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEE
Confidence 9776543 234456666542 3332 133456789999999999985 7789999999987765544332 24689
Q ss_pred EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe-EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC
Q psy16652 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV-ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316 (384)
Q Consensus 238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~ 316 (384)
.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|. +...+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..
T Consensus 523 ~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~ 602 (642)
T 1e07_A 523 TLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQH 602 (642)
T ss_pred EEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECcc
Confidence 99999999999999999999887656678888887664 55556677889999999999999999999999999987752
Q ss_pred CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
...|.|.+++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 603 ----------------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v 640 (642)
T 1e07_A 603 ----------------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640 (642)
T ss_pred ----------------CceEEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence 34699999999999999999999999999888888764
No 16
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=272.08 Aligned_cols=278 Identities=20% Similarity=0.352 Sum_probs=207.2
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++... ...++............|.|
T Consensus 3 ~~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i---------------~~~~~~~~~~~~~~~~~L~i 67 (304)
T 2yd9_A 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV---------------NSQRFETIEFDESAGAVLRI 67 (304)
T ss_dssp -CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC----------------------CTTEEEEEETTTTEEEEEE
T ss_pred CccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEEC---------------CCCceEEEEecCCCceEEEE
Confidence 356789999999999999999999999998888899999987652 23344444322444578999
Q ss_pred eecCC-CCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccCCCceEEeecCceEEEEEEecccCCCeEEEEeC
Q psy16652 149 KEIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD 220 (384)
Q Consensus 149 ~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~ 220 (384)
.+++. +|+|.|+|.+.+.. +..+..+.|.|..++ .+. ..+....+.+|+.+.|.|.+.+.|.+.+.|+++
T Consensus 68 ~~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~ 145 (304)
T 2yd9_A 68 QPLRTPRDENVYECVAQNSV-GEITVHAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAASGNPDPEITWFKD 145 (304)
T ss_dssp CSCCTTTTCSEEEEEEECSS-CEECCEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred ecccccCCCeEEEEEEECCC-CeEEEEEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECccCCCCeEEEEEC
Confidence 99998 99999999998554 446777888887652 222 224556788999999999999999999999999
Q ss_pred CCcccccCc----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE---ecCeEEecCCCcccccCCcEEE
Q psy16652 221 NSAALSTGG----SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE---FAPVITINRPRQGQALQYDAIL 293 (384)
Q Consensus 221 ~~~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l 293 (384)
+..+..... ....+..|.|.+++.+|+|.|+|.+.|..+...+....+.|. .+|.+...+....+.+|+.+.|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l 225 (304)
T 2yd9_A 146 FLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225 (304)
T ss_dssp TEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEE
T ss_pred CEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEE
Confidence 877654321 123355899999999999999999999877654333455553 5777777777778899999999
Q ss_pred EEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 294 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.|.+.|.|.|.+.|+++|..+....... .....|.|.++ +|+|.|+|.|.|..|....++.|.|.+++.
T Consensus 226 ~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 294 (304)
T 2yd9_A 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLPK 294 (304)
T ss_dssp EEEEEEESCCEEEEEETTEECSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC------
T ss_pred EEEEeeeCCCEEEEEECCEECCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence 9999999999999999999887654321 12334555544 699999999999999999999999988764
Q ss_pred C
Q psy16652 374 G 374 (384)
Q Consensus 374 ~ 374 (384)
.
T Consensus 295 ~ 295 (304)
T 2yd9_A 295 A 295 (304)
T ss_dssp -
T ss_pred c
Confidence 3
No 17
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.3e-38 Score=299.86 Aligned_cols=322 Identities=18% Similarity=0.203 Sum_probs=236.8
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
|.+.|.|++|+..+....--.....+.+|.|.+++.+|+|.|.|.+.+........ ...+.....++.....+..
T Consensus 138 p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~-----~~~l~V~~~p~~~~~~~~~ 212 (642)
T 1e07_A 138 QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSD-----SVILNVLYGPDAPTISPLN 212 (642)
T ss_pred CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccc-----eEEEEEEeCCCCcEEecCC
Confidence 46789999997665433211122346799999999999999999998754321110 0011112223333445666
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
..+.+|+.+.|.|.+.+.|.+.+.|++++... .....|.|.+++.+|+|.|+|
T Consensus 213 ~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i---------------------------~~~~~L~i~~~~~~d~G~Y~C 265 (642)
T 1e07_A 213 TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQ---------------------------QSTQELFIPNITVNNSGSYTC 265 (642)
T ss_pred cccccCCEEEEEEEcCCCCCcEEEEEECCeEc---------------------------ccCCceEEecccccCCeEEEE
Confidence 77899999999999988888899999976541 011259999999999999999
Q ss_pred EEEEccCcc-eeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEE
Q psy16652 162 EVIISLNNK-VSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL 237 (384)
Q Consensus 162 ~~~~~~~~~-~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l 237 (384)
.+.+..+.. .+..+.|.|..++.... .......+..|+.+.|.|.+.+.| +.+.|++++..+........ .+..|
T Consensus 266 ~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L 344 (642)
T 1e07_A 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTL 344 (642)
T ss_pred EEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEE
Confidence 999766543 34456677765432111 122334566688899999998865 69999999987755443332 35689
Q ss_pred EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC
Q psy16652 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316 (384)
Q Consensus 238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~ 316 (384)
.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.. .+.+....+..|+.+.|.|.+.|.|.+.+.|+++|..+..
T Consensus 345 ~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~ 424 (642)
T 1e07_A 345 TLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH 424 (642)
T ss_pred EEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC
Confidence 999999999999999999988876667788888877753 3455566788999999999999999999999999987742
Q ss_pred CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE--EEEEEeeee
Q psy16652 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE--IELFDRETQ 372 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~~ 372 (384)
...|.|.+++.+|.|.|+|.|.|..|....+ +.|.|.+++
T Consensus 425 ----------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~ 466 (642)
T 1e07_A 425 ----------------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466 (642)
T ss_pred ----------------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC
Confidence 3469999999999999999999999877654 555665543
No 18
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.2e-39 Score=299.51 Aligned_cols=347 Identities=14% Similarity=0.137 Sum_probs=228.3
Q ss_pred CCCCcchh-ccccCCCCCCCCCCCCceEEEEEeeecceEE-EEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 3 APSPFDFV-NRFQNTSTPWDPSTQKPIRFFIHEVTGEKVT-SVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 3 ~~~~~w~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
.+.|.||+ |+..+.... +.....+..|.|.+++.+|+| .|.|.+.+......... + .+........+|.+...+.
T Consensus 143 ~~~v~W~~~~g~~l~~~~-~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~-~-~l~V~~~~~~~p~i~~~~~ 219 (524)
T 2ec8_A 143 VTNYSLKGCQGKPLPKDL-RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEK-F-ILKVRPAFKAVPVVSVSKA 219 (524)
T ss_dssp CSCEEEECSSSCCCCSSC-EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCC-E-ECCEECCCCSCCEEECSCS
T ss_pred cceEEEEccCCcCcCCCC-ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEE-E-EEEEEeCCCCCCcEEecCC
Confidence 47899988 554432211 111123558999999999999 99999886422111000 0 0000001246788888888
Q ss_pred ceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecCCCCCee
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~ 158 (384)
...+.+|++++|.|.+.+.+.+. +.|++++.... +. ...+..+..+ .......|.|.+++.+|+|.
T Consensus 220 ~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 287 (524)
T 2ec8_A 220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTK-----LQ-------EKYNSWHHGDFNYERQATLTISSARVNDSGV 287 (524)
T ss_dssp EEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCC-----CC-------EEEEEEECSSSCEEEEEEEEESSCCTTTCEE
T ss_pred cceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCc-----cc-------cccccccccCCccceEEEEEECCCCHHHCEE
Confidence 88899999999999999877665 99999886520 00 0011111110 12234589999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCC--CceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeE---
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNS--TRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIY--- 232 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~--- 232 (384)
|+|.+.+.. +.....+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.+. +.|++++..+........
T Consensus 288 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~ 366 (524)
T 2ec8_A 288 FMCYANNTF-GSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE 366 (524)
T ss_dssp EEEEEECSS-CEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC
T ss_pred EEEEEEecC-CceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc
Confidence 999998644 445568889998887665322 2467899999999999999999998 999999987765442111
Q ss_pred ------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEE
Q psy16652 233 ------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV 306 (384)
Q Consensus 233 ------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 306 (384)
....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+. ...| .|.|.+.|.|.|.+.
T Consensus 367 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i~ 439 (524)
T 2ec8_A 367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVNTKPEILTYDR---LVNG---MLQCVAAGFPEPTID 439 (524)
T ss_dssp SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEECEEEEEEEEEC---CSSS---CEEEEEEEESCCEEE
T ss_pred cCCCceeEEEEEEeecCcccCeEEEEEEEecCceE-EEEEEEEEecCCeEeeccc---CcCc---EEEEEEEeecCCEEE
Confidence 23589999999999999999999998874 7789999999998876543 2344 899999999999999
Q ss_pred EEECCEEecCC-------CceeeeeeeccCccccceEE----EeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 307 WIKDGVQIMNN-------QHYSVSHFATSDEFSDTSLR----VITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 307 W~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~----i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
|++++..+... +...... .....+.+. +.....+|.|.|+|.|.|..|.....+.|.|++++...
T Consensus 440 W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~~ 515 (524)
T 2ec8_A 440 WYFCPGTEQRCSASVLPVDVQTLNS----SGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQ 515 (524)
T ss_dssp CCCC----------CCCCCCCCCCC-----CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-------
T ss_pred EEECCCcccccccccCCCCceeeee----ccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHHH
Confidence 99998765211 1100000 001233333 33344689999999999999999999999999887654
Q ss_pred c
Q psy16652 376 E 376 (384)
Q Consensus 376 ~ 376 (384)
+
T Consensus 516 ~ 516 (524)
T 2ec8_A 516 I 516 (524)
T ss_dssp -
T ss_pred c
Confidence 3
No 19
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=4e-39 Score=293.67 Aligned_cols=339 Identities=12% Similarity=0.111 Sum_probs=213.9
Q ss_pred CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
+|.+.+.|++++.+... ...............++.+|+|.|.|.+.+..+..... ... .....+|.+ ++.
T Consensus 166 ~P~P~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~-----~~~-l~V~~~p~~--~p~ 235 (527)
T 3qs9_E 166 VPEPIVEWVLCDSQGES--CKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR-----LFT-IDLNQTPQT--TLP 235 (527)
T ss_dssp SSCCEEEEEEC---------------CEEECCSEECCCCSSCEEEEEECSSCEEEEE-----CEE-EESSSCCCC--SCC
T ss_pred ecCCeEEEEECCCCCcc--ccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccce-----EEE-EEEeccCcc--CCC
Confidence 47889999998754321 11122233334455677899999999998753322110 000 011223333 455
Q ss_pred ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+.+|+++.|.|.+. +.|.+.+.|++++......... . .......+. .....+|.|.+++.+|+|.|
T Consensus 236 ~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~-~---~~~~~~~~~------~~~~~~L~I~~v~~~DsG~Y 305 (527)
T 3qs9_E 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYF-E---MSTYSTNRT------MIRILFAFVSSVARNDTGYY 305 (527)
T ss_dssp EEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEE-E---EEEEETTTE------EEEEEEEEESSCCGGGCEEE
T ss_pred ceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCcee-e---eeeeccCcc------eeeEEEEEEccCCcccCeEE
Confidence 67789999999999997 7888999999988753211000 0 000001111 11234699999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~ 238 (384)
+|.+.|. .+..+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.|.+.|++++..+.........+..|.
T Consensus 306 ~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~ 381 (527)
T 3qs9_E 306 TCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS 381 (527)
T ss_dssp EEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEE
T ss_pred EEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEE
Confidence 9999754 6677888888777654322 2345678999999999999999999999999987765544334566899
Q ss_pred EcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC
Q psy16652 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318 (384)
Q Consensus 239 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~ 318 (384)
|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+. ...|.|.+.|.|.|.|.|++++.......
T Consensus 382 I~~v~~~D~G~YtC~A~N~~g~~-~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~~ 452 (527)
T 3qs9_E 382 KFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCT 452 (527)
T ss_dssp EECCCTTCCSCEEEEEEETTEEE-EEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECCC-----CC
T ss_pred EecCCcccCEEEEEEEEeCCCcE-EEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCCc
Confidence 99999999999999999998875 6689999999998876432 23579999999999999998865542111
Q ss_pred c------eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 319 H------YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 319 ~------~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
. ................+++.....+|.|.|+|.|.|..|..+..+.|.|.++.
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~ 512 (527)
T 3qs9_E 453 EEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512 (527)
T ss_dssp CCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC------
T ss_pred cccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCCc
Confidence 1 00000000000011223333334569999999999999999999999876654
No 20
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=5.9e-38 Score=303.23 Aligned_cols=339 Identities=21% Similarity=0.275 Sum_probs=258.3
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
|.+.+.|++|+.++.. ...+|.|.+++.+|+|.|.|.+.+........ ..+.......+|.+...+..
T Consensus 371 p~~~v~W~k~g~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~----~~l~v~~~~~~p~i~~~~~~ 438 (816)
T 3dmk_A 371 PIKTVSWMKDGKAIGH--------SESVLRIESVKKEDKGMYQCFVRNDRESAEAS----AELKLGGRFDPPVIRQAFQE 438 (816)
T ss_dssp CCCEEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEEC----CEEECCCSSCCCEEEEECCC
T ss_pred CCCEEEEEECCEECCC--------CCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE----EEEEEccccCCCceEecCcc
Confidence 5678999999866542 34689999999999999999988753221110 00111122467788887888
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEe---eCCCCceEEEEEeecCCCCCee
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLT---TDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
..+.+|+.+.|.|.+.+.|.+.+.|++++.... ...++... .........|.|.+++.+|+|.
T Consensus 439 ~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~--------------~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 504 (816)
T 3dmk_A 439 ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIA--------------NNDRYQVGQYVTVNGDVVSYLNITSVHANDGGL 504 (816)
T ss_dssp EEECSSSCEEEEEEEECSSCCEEEEEETTEECC--------------SCTTEEEEEEECTTSCEEEEEEESSCCTTTCEE
T ss_pred eEEcCCCCEEEEEEEecCCCCEEEEEECCEECC--------------CCCCcccccEEecCCCcEEEEEEeeccccCCEE
Confidence 889999999999999998888999999775421 12222221 1112334579999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-eEeccEE
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-IYRGNIL 237 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~l 237 (384)
|+|.+.|.. +.....+.|.|..+|.+.. .....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ...+..|
T Consensus 505 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l 581 (816)
T 3dmk_A 505 YKCIAKSKV-GVAEHSAKLNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTL 581 (816)
T ss_dssp EEEEEEETT-EEEEEEEEEEECSSCEECC--CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEE
T ss_pred EEEEEEECC-CeEEEEEEEEEecCCeeEc--cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeE
Confidence 999998654 4566778888888876543 34466889999999999999888899999999876554433 2346789
Q ss_pred EEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEec-CCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEe
Q psy16652 238 KIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN-RPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQI 314 (384)
Q Consensus 238 ~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~ 314 (384)
.|.++. .+|+|.|+|.+.|..|...+..+.+.+..+|.+... .....+..|+.+.|.|.+.+.+++ .+.|+++|..+
T Consensus 582 ~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l 661 (816)
T 3dmk_A 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661 (816)
T ss_dssp EESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCC
T ss_pred EEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEc
Confidence 999998 589999999999998876677788888888865432 344567889999999999876655 99999999988
Q ss_pred cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
............ ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 662 ~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~ 716 (816)
T 3dmk_A 662 SEDLGITTSRVG----RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR 716 (816)
T ss_dssp CGGGTCEEEEET----TTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEE
T ss_pred CCCCCeeEEEcC----CCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCc
Confidence 655544433211 1356899999999999999999999999999999999888764
No 21
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=287.56 Aligned_cols=329 Identities=18% Similarity=0.207 Sum_probs=216.4
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCC--c
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADD--Y 102 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~ 102 (384)
....+|.|.+++.+|+|.|.|.+....+.......-..+........+|.+...+....+.+|+.++|.|.+.+.++ .
T Consensus 67 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~ 146 (523)
T 2rcj_C 67 GTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAV 146 (523)
T ss_pred CCEEEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCce
Confidence 34568999999999999999999875321110000000000111235677777677777788999999999988654 4
Q ss_pred cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE---
Q psy16652 103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV--- 179 (384)
Q Consensus 103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v--- 179 (384)
.+.|++++.......... ......++.+.. ...|.|.+++.+|+|.|+|.+.+..+. ....+.+.+
T Consensus 147 ~v~W~k~g~~l~~~~~~~---~~~~~~~~~~~~-------~s~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~ 215 (523)
T 2rcj_C 147 TVAWKADGSPVKAGVETT---KPSKQSNNKYAA-------SSYLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSA 215 (523)
T ss_pred EEEEecCCCCCCCceEec---cccccCCCCEEE-------EEEEEEechhcCCCceEEEEEEecCcc-cccceeeeecCC
Confidence 899999876532110000 000001122222 236999999999999999999876443 333333321
Q ss_pred -ecCCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCe
Q psy16652 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRG 248 (384)
Q Consensus 180 -~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G 248 (384)
..+|.+... .....+.+|+.+.|.|.+.+. |.+ .+.|++++..+... .+.....+.|.|.++..+| |
T Consensus 216 ~~~~P~v~~~-~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G 293 (523)
T 2rcj_C 216 STKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-Q 293 (523)
T ss_pred CCcCCEEEec-CCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-c
Confidence 223333322 222345789999999999885 767 89999998764321 1111223589999999999 9
Q ss_pred EEEEEEEeCCCCceeeEEEEEEEecCeEEecCC-Ccc-cccCCcEEEEEEEeccCC----CeEEEEECCEEecCCCceee
Q psy16652 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP-RQG-QALQYDAILECHVEAYPP----PAIVWIKDGVQIMNNQHYSV 322 (384)
Q Consensus 249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~-~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~~~ 322 (384)
.|+|.|.|..+.. .....+.+...|.+.+.++ ... +.+|+.+.|.|.+.|.|+ +.|.|+++|..+........
T Consensus 294 ~Y~C~a~n~~g~~-~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~ 372 (523)
T 2rcj_C 294 TYICNVNHKPSNT-KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR 372 (523)
T ss_pred eEEEEEEeCCCCc-ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCc
Confidence 9999999988875 4556666666676544333 333 678999999999998654 48999999999875543222
Q ss_pred eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.....+.....+.|.|..+..+|+|.|+|.|.|..+.......|.
T Consensus 373 ~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 373 EQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred eecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence 111112222345688999999999999999999988765554444
No 22
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-38 Score=303.43 Aligned_cols=342 Identities=18% Similarity=0.216 Sum_probs=250.1
Q ss_pred CCCCCCcchhccccCCCCCC-------CCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCC
Q psy16652 1 FIAPSPFDFVNRFQNTSTPW-------DPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTP 73 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p 73 (384)
.|.+.+.|++|+.++..... .........|.|.+++.+|+|.|+|.+.+..+...... ......+|
T Consensus 456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~-------~l~V~~~p 528 (816)
T 3dmk_A 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSA-------KLNVYGLP 528 (816)
T ss_dssp SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEE-------EEEECSSC
T ss_pred CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEE-------EEEEecCC
Confidence 36788999999876653220 01112234799999999999999999987533211100 00112344
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC-
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ- 152 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~- 152 (384)
.+ ..+....+.+|+++.|.|.+.+.|.+.+.|++++... ....++.+.. +.+|.|.++.
T Consensus 529 ~~-~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l--------------~~~~~~~~~~-----~~~l~i~~v~~ 588 (816)
T 3dmk_A 529 YI-RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL--------------PINRKQKVFP-----NGTLIIENVER 588 (816)
T ss_dssp EE-CCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEES--------------CCSTTEEECT-----TSEEEESSCCH
T ss_pred ee-EccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEc--------------ccCCceEEec-----CCeEEEEecCc
Confidence 33 3345567889999999999998888899999977542 1122222221 2269999998
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCcee
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGSI 231 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~ 231 (384)
.+|+|.|+|.+.|..+...+..+.+.|..+|...........+.+|+.+.|.|.+.+.+. +.+.|++++..+.......
T Consensus 589 ~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~ 668 (816)
T 3dmk_A 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668 (816)
T ss_dssp HHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCE
T ss_pred cccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCee
Confidence 699999999999876656667778888877766544444556889999999999976555 4999999998775443322
Q ss_pred E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEE
Q psy16652 232 Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV 306 (384)
Q Consensus 232 ~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 306 (384)
. ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.
T Consensus 669 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~ 747 (816)
T 3dmk_A 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQ-QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVT 747 (816)
T ss_dssp EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEE
T ss_pred EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccE-EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEE
Confidence 1 23579999999999999999999988876 67788999999999888888888899999999999999999999
Q ss_pred EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|++++..+...... +.. .......+++|.|.+++.+|+|.|+|.|.|..|+..+++.+.....+
T Consensus 748 W~k~~~~~~~~~~~-~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~~ 811 (816)
T 3dmk_A 748 WKKAVGDTPGEYKD-LKK-SDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAH 811 (816)
T ss_dssp CCEECSSSTTCCBC-CCC-BTTEEEETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC-
T ss_pred EEecCCCCCccccc-ccc-CCCEEecCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeecc
Confidence 99987654322110 000 00011135689999999999999999999999999999887765543
No 23
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=6.1e-37 Score=285.47 Aligned_cols=327 Identities=14% Similarity=0.185 Sum_probs=223.7
Q ss_pred ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCC-C-ccE
Q psy16652 27 PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYAD-D-YPV 104 (384)
Q Consensus 27 ~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~-~~v 104 (384)
..+|.|.+++.+|+|.|.|.+.+......... .+..... ++....+.+|+.+.|.|.+...+ . +.+
T Consensus 184 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~------~l~V~~~------~p~~~~~~~G~~v~l~C~~~~~~~~~~~~ 251 (585)
T 2ocw_A 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNA------DLQVLKP------EPELVYEDLRGSVTFHCALGPEVANVAKF 251 (585)
T ss_pred EEEEEEccCChhHCeEEEEEeccCCccccceE------EEEEccC------CCceeEEcCCCcEEEEEEcCCCCCCceEE
Confidence 34899999999999999999986533211100 0011111 13334578999999999973332 2 578
Q ss_pred EEE-EeCCCCCCcccceec-cCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce----eeeEEEE
Q psy16652 105 IWM-KMDTAKKMEPLPISM-SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELI 178 (384)
Q Consensus 105 ~W~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~ 178 (384)
.|+ +++... ...+.. .........++.+......+.+.|.|.+++.+|+|.|+|.+.+. +... ...+.|.
T Consensus 252 ~w~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~ 327 (585)
T 2ocw_A 252 LCRQSSGENC---DVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLF 327 (585)
T ss_pred EEEeCCCCCc---ceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEE
Confidence 886 554321 111111 11111234566665543455568999999999999999999864 3322 2677888
Q ss_pred EecCCccccCCCceEEeecCceEEEEEEecccCCCeE----EEEe--CCC--ccccc---------CceeE----ecc--
Q psy16652 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTI----SWRR--DNS--AALST---------GGSIY----RGN-- 235 (384)
Q Consensus 179 v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v----~W~~--~~~--~~~~~---------~~~~~----~~~-- 235 (384)
|..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+ .|++ ++. .+... ..... ..+
T Consensus 328 V~~~p~~~~-~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~ 406 (585)
T 2ocw_A 328 VNEESTIPR-SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTF 406 (585)
T ss_pred Eeccccccc-CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEE
Confidence 888876653 356677889999999999999888876 7999 775 33221 11111 112
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEe----ccCCCeEEEEECC
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE----AYPPPAIVWIKDG 311 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~ 311 (384)
.|.|.+++.+|+|.|+|.+ |..+.. +..+.|.|...|.....+....+.+|+.+.|.|.+. +.|.+.+.|+++|
T Consensus 407 ~L~I~~v~~~D~G~Y~C~a-n~~g~~-~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g 484 (585)
T 2ocw_A 407 TVILNQLTSRDAGFYWCLT-NGDTLW-RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTG 484 (585)
T ss_pred EEEECCCChhhCEEEEEcc-cCCCcc-ceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecC
Confidence 4999999999999999999 777664 667888887644333346667789999999999997 6788899999999
Q ss_pred EEecCCCceee-e-eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeee
Q psy16652 312 VQIMNNQHYSV-S-HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQ 372 (384)
Q Consensus 312 ~~~~~~~~~~~-~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~ 372 (384)
..+........ . ............|.|.+++.+|+|.|+|.|.|..|..... +.|.|.++|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 485 CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred ceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 87754321110 0 0000011123689999999999999999999999977654 899999887
No 24
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=1.8e-37 Score=271.76 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=211.1
Q ss_pred CCCCCcchhccccCCCC------------CCCCC-------CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHH
Q psy16652 2 IAPSPFDFVNRFQNTST------------PWDPS-------TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSF 62 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~------------~~~~~-------~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~ 62 (384)
|.+.+.|++++.+.... ...+. .....+|.|.+++.+|+|.|.|.+........+
T Consensus 22 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~l------ 95 (363)
T 1wio_A 22 KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQL------ 95 (363)
T ss_dssp SSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEEEEETTEEEEEEE------
T ss_pred CceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEEEEEEECCCcEEE------
Confidence 56789999996431100 01111 235778999999999999999998875321111
Q ss_pred HhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652 63 LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142 (384)
Q Consensus 63 ~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (384)
... .+.. +....+.+|++++|.|.+.+.|.+.+.|++++... ...
T Consensus 96 ----~V~----~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------------------~~~ 140 (363)
T 1wio_A 96 ----LVF----GLTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN--------------------------IQG 140 (363)
T ss_dssp ----EEE----EEEE-SSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE--------------------------EEE
T ss_pred ----EEE----eCCC-CCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc--------------------------ccc
Confidence 000 1222 22345789999999999988888899999876431 011
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-----cCCCeEEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-----FPAPTISW 217 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~v~W 217 (384)
...|.|.+++.+|+|.|+|.+.+. .+.....+.|.|..+|.. +....+.+|+.+.|.|.+.+ .|.+.+.|
T Consensus 141 ~~~L~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~l~v~~~p~~----~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W 215 (363)
T 1wio_A 141 GKTLSVSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVLAFQKA----SSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215 (363)
T ss_dssp SSEEEECSBCGGGCEECEEEEEET-TEEEEECCEECEECCSCS----EEEEEEETBCCEEEECCCCCCCCSSCEEEEEEE
T ss_pred ceEEEEeeCChhcCCEEEEEEecC-CCeEEEEEEEEEecCCCC----CCceEEecCCEEEEEEEEecccccCCCceeEEE
Confidence 237999999999999999999854 444555666777655543 25567889999999998876 67789999
Q ss_pred EeCCCcccc--------cCceeE------------e--ccEEEEcCCCCCCCeEEEEEEEeC--CCCceeeEEEEEEEec
Q psy16652 218 RRDNSAALS--------TGGSIY------------R--GNILKIPNITKTDRGTYYCVAQNG--VGRGMKRNIAVEVEFA 273 (384)
Q Consensus 218 ~~~~~~~~~--------~~~~~~------------~--~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~~~ 273 (384)
++++..+.. ...... . ...|.|.++..+|+|.|+|.|.|. .|.. +..+.|.|...
T Consensus 216 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~~v 294 (363)
T 1wio_A 216 QAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL-HQEVNLVVMRA 294 (363)
T ss_dssp EESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCE-EEEEEEEEEEE
T ss_pred ecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeE-EEEEeEEEEEe
Confidence 999887654 222221 1 338999999999999999999999 7854 67777777611
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.|+.+.|.|.+.+.|+|. +.|+++|..+.. ...|.|..++.+|+|.|+|
T Consensus 295 -------------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~----------------~~~l~i~~v~~~d~G~Y~C 345 (363)
T 1wio_A 295 -------------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV----------------SKREKAVWVLNPEAGMWQC 345 (363)
T ss_dssp -------------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE----------------EESSSEEEESSCCSEEEEE
T ss_pred -------------cCCCeeEEEEEccccCCCccEEEEeCCCceee----------------eeeeeeeeeccccceeEEE
Confidence 278899999999999887 999999976642 2346788999999999999
Q ss_pred EEEeCCcceEEEEEEEE
Q psy16652 352 KAANKYGSAQKEIELFD 368 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v 368 (384)
.|.|. |....+..|.|
T Consensus 346 ~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 346 LLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EECSS-SSCCEEEEEEE
T ss_pred EEecC-CeEEEecceEe
Confidence 99965 45555556655
No 25
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=100.00 E-value=2.7e-36 Score=258.91 Aligned_cols=285 Identities=15% Similarity=0.233 Sum_probs=208.9
Q ss_pred eeeCcceeeeccCcEEEEEEeecCCCc-----cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCC---CCceEEEE
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYADDY-----PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP---ETSTYILS 147 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~ 147 (384)
...|..+.+..|++|+|.|.+.+.+.. .+.|+|++...... ......+.......++.+.... ...+.+|.
T Consensus 4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMA-VFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSE-EEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceE-EEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 445667778999999999999875433 49999987653211 1111111122334455554321 23456899
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~ 226 (384)
|.+++.+|+|.|+|.+.+...+..+..+.|.+..+|..... .....+..++.+.+.|.+ .+.|.+.+.|++++..+..
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~-~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~ 161 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAE-VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPN 161 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEE-ECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEE
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceec-ccceEeecCceEEEEEEccCccCCcEEEeecCCccccc
Confidence 99999999999999997666666777777877777655432 223346678889999987 4688899999999876643
Q ss_pred cCce-------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEE
Q psy16652 227 TGGS-------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHV 297 (384)
Q Consensus 227 ~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~ 297 (384)
.... ....+.|.|.....+|+|.|+|.|.|..+.. ....+.|.|.++|.+.+.+.. ..+..|+.++|.|.+
T Consensus 162 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~ 241 (313)
T 4fqp_A 162 TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA 241 (313)
T ss_dssp EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE
T ss_pred cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe
Confidence 3211 1123468899999999999999999976543 355677888889988765544 445667899999999
Q ss_pred eccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 298 EAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 298 ~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.|+|.| .|.|+++|..+..... ..+.+|.|.+++.+|+|.|+|.|.|..|+.+.++.|.|...||
T Consensus 242 ~g~P~p~~v~W~~~~~~l~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 242 RSNPEPTGYNWSTTMGPLPPFAV-----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp EEESCCCEEEEEETTBSCCTTEE-----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred cCCCCCcEEEEEECCEECCCceE-----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 999999 6999999988754321 1356899999999999999999999999999999999988764
No 26
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=8.9e-36 Score=277.62 Aligned_cols=328 Identities=15% Similarity=0.159 Sum_probs=229.4
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCcc
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDYP 103 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~ 103 (384)
.+..+|+|.+++.+|+|.|.|.+.+........ .......+|.+...+....+.+|+.++|.|.+.+. +...
T Consensus 72 ~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~-------~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~ 144 (585)
T 2ocw_A 72 NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFD-------VSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKR 144 (585)
T ss_pred CCEEEEEECCCCcccCEEEEEEcccCCCCceEE-------EEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCcc
Confidence 445689999999999999999987653321110 01112345677777888889999999999999864 4678
Q ss_pred EEEEEeCCCCCCcccceecc-CceeeeCCceEEeeCC-CCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652 104 VIWMKMDTAKKMEPLPISMS-GSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181 (384)
Q Consensus 104 v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 181 (384)
+.|++++..... ...... .......+++.+..+. ..+..+|.|.+++.+|+|.|+|.+.+.. +..+..+.|.|..
T Consensus 145 v~W~k~~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~ 221 (585)
T 2ocw_A 145 KSLYKQIGLYPV--LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDS-NSNKKNADLQVLK 221 (585)
T ss_pred EEEEECCCCCce--EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCC-ccccceEEEEEcc
Confidence 999998754210 011100 0111123556555432 3455689999999999999999998543 4466777888875
Q ss_pred CCccccCCCceEEeecCceEEEEEEecccC-C-CeEEEE-eCCCc---ccc---------cCceeEe----cc--EEEEc
Q psy16652 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFP-A-PTISWR-RDNSA---ALS---------TGGSIYR----GN--ILKIP 240 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~-~~v~W~-~~~~~---~~~---------~~~~~~~----~~--~l~i~ 240 (384)
++ +....+.+|+.+.|.|.+.+.+ . +.+.|+ +++.. +.. ....... .+ .|.|.
T Consensus 222 ~~------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~ 295 (585)
T 2ocw_A 222 PE------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVIT 295 (585)
T ss_pred CC------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEc
Confidence 43 3345678999999999974322 2 678897 77632 111 1111111 22 79999
Q ss_pred CCCCCCCeEEEEEEEeCCCCce----eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeE----EEEE--C
Q psy16652 241 NITKTDRGTYYCVAQNGVGRGM----KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI----VWIK--D 310 (384)
Q Consensus 241 ~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~ 310 (384)
+++.+|+|.|+|.|.|. +... ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+ .|++ +
T Consensus 296 ~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~ 374 (585)
T 2ocw_A 296 GLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQN 374 (585)
T ss_pred cCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCC
Confidence 99999999999999995 3332 2778899999998877777778889999999999999999976 7999 8
Q ss_pred CE--EecCC---------CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 311 GV--QIMNN---------QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 311 ~~--~~~~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
|. .+... .++.+... ......+|.|.+++.+|+|.|+|.| |..|.....+.|.|...++
T Consensus 375 g~~~~l~~~~~~~~~~~~~r~~~~~~---~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p 444 (585)
T 2ocw_A 375 GRCPLLVDSEGWVKAQYEGRLSLLEE---PGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP 444 (585)
T ss_pred CCCceeeeecceeecccCCCEEEecc---CCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc
Confidence 86 44322 22222210 0112235999999999999999999 9999999999999987543
No 27
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=100.00 E-value=6.9e-36 Score=253.60 Aligned_cols=268 Identities=16% Similarity=0.188 Sum_probs=204.5
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.|...+....+.+|++++|.|.+.+ .+.|++++... +.... . ...|.|.
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-------------------~~~~~--~--~~~L~i~ 62 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-------------------EMVEN--K--KNEWIQE 62 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-------------------CEEEE--C--SSEEEET
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-------------------eeecC--C--CceEEEe
Confidence 56788888888888999999999999876 89999988652 00001 1 1479999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEE-eCCCccccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWR-RDNSAALST 227 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~-~~~~~~~~~ 227 (384)
+++.+|+|.|+|.+.+ + .+..+.|.|..++... .......+.+|+.+.|.|.+.+ |. +.+.|+ +++..+...
T Consensus 63 ~~~~~d~G~Y~C~~~n---g-~~~~~~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~ 136 (290)
T 2o26_X 63 KAEATRTGTYTCSNSN---G-LTSSIYVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTD 136 (290)
T ss_dssp TCCGGGCEEEEEEESS---S-CEEEEEEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTT
T ss_pred ccCHHhCeEEEEEeeC---C-ccEEEEEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCC
Confidence 9999999999999975 3 2677888888777655 4456677889999999999986 77 899995 566655443
Q ss_pred Ccee-EeccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652 228 GGSI-YRGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP 301 (384)
Q Consensus 228 ~~~~-~~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 301 (384)
.... .....|.|.+++.+|+| .|+|.+.|..+...+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|
T Consensus 137 ~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p 216 (290)
T 2o26_X 137 LTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS 216 (290)
T ss_dssp CEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred CceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence 3322 23468999999999999 99999999855444556777776 788888777777899999999999999999
Q ss_pred CCe-EEEEECCEEe----cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 302 PPA-IVWIKDGVQI----MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 302 ~~~-v~W~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.|. +.|++++..+ .......+. ........+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P 290 (290)
T 2o26_X 217 TSVNSMWLKMNPQPQHIAQVKHNSWHR--GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290 (290)
T ss_dssp TTCEEEEEEESSSEEECCCEECCEEEE--ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred cceeEEEecCCCCCccceeeccccccc--CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence 996 9999998763 222221111 00011235689999999999999999999999999999999998764
No 28
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=7.8e-36 Score=274.18 Aligned_cols=338 Identities=12% Similarity=0.104 Sum_probs=216.4
Q ss_pred CCCcchhccccCCCCCCC----CCCCC----ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652 4 PSPFDFVNRFQNTSTPWD----PSTQK----PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI 75 (384)
Q Consensus 4 ~~~~w~~~~~~~~~~~~~----~~~~~----~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 75 (384)
+.+.|++|+.++...... ....+ ..+|.|.+++.+|+|.|.|.+.+..........+ ........+|.+
T Consensus 146 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~---~~~~~~~~~P~v 222 (523)
T 2rcj_C 146 VTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP---TECSASTKGPSV 222 (523)
T ss_pred eEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceee---eecCCCCcCCEE
Confidence 389999998766532210 00111 1369999999999999999998863322111110 011123455666
Q ss_pred eeeCcceeeeccCcEEEEEEeecC-CCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYA-DDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
........+.+|+.+.|.|.+.+. |.+ .+.|++++...... ........++.|.. ...|.|.+++.
T Consensus 223 ~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~-----~~~~~~~~~g~~~~-------~s~L~i~~~~~ 290 (523)
T 2rcj_C 223 FPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVH-----TFPAVLQSSGLYSL-------SSVVTVPSSSL 290 (523)
T ss_pred EecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceE-----eCCcEecCCCcEEE-------EEEEEechhhc
Confidence 644445557899999999999885 655 89999988652110 00000111222222 34799999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE-eecCceEEEEEEecccCC----CeEEEEeCCCcccccC
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI-VSEGQTVYLYCYANGFPA----PTISWRRDNSAALSTG 228 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~ 228 (384)
+| |.|+|.+.|..+. ......|.+...|.+....+.... +.+|+.+.|.|.+.|.++ +.+.|++++..+....
T Consensus 291 ~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~ 368 (523)
T 2rcj_C 291 GT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAK 368 (523)
T ss_pred CC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCc
Confidence 99 9999999976544 344455555444544333233232 788999999999988543 4899999998765432
Q ss_pred c---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE----EEecCeEEecCCCcccccCCcEEEEE
Q psy16652 229 G---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE----VEFAPVITINRPRQGQALQYDAILEC 295 (384)
Q Consensus 229 ~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C 295 (384)
. .....+.|.|.++..+|+|.|+|.|.|..+.. .....+. +..+|.+...+.......++.+.|.|
T Consensus 369 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C 447 (523)
T 2rcj_C 369 TKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTC 447 (523)
T ss_pred cCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC-ceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEE
Confidence 1 11223468899999999999999999876654 2233343 45678776654443333455599999
Q ss_pred EEeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 296 HVEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 296 ~~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
.+.|.|++ .+.|+++|.++.............+.....+.|.+.....+|.|.|+|.|.|....
T Consensus 448 ~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~~l~ 513 (523)
T 2rcj_C 448 LVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 513 (523)
T ss_pred EEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence 99997666 89999999988644332222222221122334556666667899999999998653
No 29
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=100.00 E-value=1.9e-35 Score=250.84 Aligned_cols=274 Identities=18% Similarity=0.224 Sum_probs=204.7
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++... .... .......|.|.+
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~-------------------~~~~--~~~~~~~L~i~~ 57 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPY-------------------WTLD--PESPGSTLTTRN 57 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSS-------------------SEEC--CCSSCCEEEESS
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCce-------------------EEEe--ccCCccEEEEee
Confidence 4677777778888999999999999876 59999755321 0111 123345799999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCC-cccccC
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNS-AALSTG 228 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~-~~~~~~ 228 (384)
++.+|+|.|+|.+.+..+ ..+..+.|.|..++......+....+.+|+.+.|.|.+.+.+.+. +.|++.+. .+....
T Consensus 58 ~~~~d~G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~ 136 (289)
T 3ejj_X 58 ATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT 136 (289)
T ss_dssp CCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTC
T ss_pred eccccCEEEEEEEeccCC-cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCc
Confidence 999999999999875444 367778888887776444445777899999999999998866654 99987443 333332
Q ss_pred cee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCC
Q psy16652 229 GSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPP 302 (384)
Q Consensus 229 ~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~ 302 (384)
... ..+..|.|.+++.+|+|.|+|.+.+......+..+.|.|. .+|.+...+....+.+|+.+.|.|.+.+ .|.
T Consensus 137 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~ 216 (289)
T 3ejj_X 137 VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216 (289)
T ss_dssp CEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSC
T ss_pred cEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCc
Confidence 222 3456899999999999999999996444334667888887 6788888777777789999999999998 788
Q ss_pred CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 303 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+.+.|++++..+........ ..........|.|.+++.+|.|.|+|.|.|..|+.++++.|.+...+.
T Consensus 217 ~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 217 FNVILKRGDTKLEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH 284 (289)
T ss_dssp CEEEEEETTEECCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred eEEEEEECCEEeeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence 99999999998865433221 111122367899999999999999999999999999999999877754
No 30
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=100.00 E-value=2.1e-35 Score=255.57 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=210.7
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC----CCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA----DDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYI 145 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 145 (384)
+.+...+..+.+.+|++++|.|.+.+. +...+.|++++................ ....+|+.+. .......+
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~ 93 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL-RPSFTDGT 93 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES-SCSSSBCC
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec-ccCCCCce
Confidence 344455667789999999999998775 445799999664321111111111111 1134566665 23445667
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecC---ceEEEEEE-ecccCCCeEEEEeC
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEG---QTVYLYCY-ANGFPAPTISWRRD 220 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g---~~~~l~C~-~~~~~~~~v~W~~~ 220 (384)
|.|.+++.+|+|.|+|.+.+...+.....+.|.|..+|.... .......+.+| +.+.|.|. +.+.|.+.+.|+++
T Consensus 94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~ 173 (331)
T 3u83_A 94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR 173 (331)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence 999999999999999997666666677888899988776532 23455678888 88999998 78889999999996
Q ss_pred CCcccc------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecC-CCcccccCCcEEE
Q psy16652 221 NSAALS------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINR-PRQGQALQYDAIL 293 (384)
Q Consensus 221 ~~~~~~------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l 293 (384)
+..... ..........|.|..+..+|+|.|+|.+.|..+.. +..+.|.|..+|.+.+.+ ....+..|+.+.|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l 252 (331)
T 3u83_A 174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKL 252 (331)
T ss_dssp SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEE
T ss_pred CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEE
Confidence 433221 11222234578999999999999999999987764 778889999999877544 3455788999999
Q ss_pred EEEEeccCCCe-EEEEECCEEecCCCceeeeeeeccCccccceEEEe-ecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 294 ECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI-TIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 294 ~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
.|.+.|.|.|. +.|++++..+..... . ...+|.|. +++.+|.|.|+|.|.|..|....++.|.|...
T Consensus 253 ~C~~~g~p~p~~i~W~~~~~~~~~~~~--~---------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 321 (331)
T 3u83_A 253 TCKADANPPATEYHWTTLNGSLPKGVE--A---------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321 (331)
T ss_dssp EEEEEEESCCCEEEEEETTBSCCTTEE--E---------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred EEeCcCCCCCCEEEEEECCCcccccce--e---------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence 99999999998 999999988754421 1 35689999 89999999999999999999999999999887
Q ss_pred ecCC
Q psy16652 372 QTGD 375 (384)
Q Consensus 372 ~~~~ 375 (384)
+...
T Consensus 322 ~~~~ 325 (331)
T 3u83_A 322 AALE 325 (331)
T ss_dssp ----
T ss_pred chhh
Confidence 6543
No 31
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=255.87 Aligned_cols=283 Identities=17% Similarity=0.247 Sum_probs=205.0
Q ss_pred cceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKEIQETD 155 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d 155 (384)
+.+.+.+|++++|.|.+.+. +...+.|+|.+.................. ..+|+.+.. ......+|.|.+++.+|
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKN-YSLNDATITLHNIGFSD 85 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESC-CSSSBCCEEECSCCGGG
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeec-cCCCceEEEEccCCHHH
Confidence 35678899999999998654 45679999987653222111111111111 123444332 13445689999999999
Q ss_pred CeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc----
Q psy16652 156 AGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG---- 229 (384)
Q Consensus 156 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~---- 229 (384)
+|.|+|.+.+...+..+..+.+.+...+.... ..+.......|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~ 165 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN 165 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence 99999999877666677777777776654332 22333445678899999986 6789999999999887654321
Q ss_pred -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCC-cccccCCcEEEEEEEeccCCC-eE
Q psy16652 230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPR-QGQALQYDAILECHVEAYPPP-AI 305 (384)
Q Consensus 230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~-~v 305 (384)
.....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.|+| .+
T Consensus 166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v 245 (308)
T 4fom_A 166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS 245 (308)
T ss_dssp SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence 12233579999999999999999999976654 355677788888887665544 445677899999999999998 69
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.|++++..+...... .....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|.
T Consensus 246 ~W~k~~~~~~~~~~~----------~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 303 (308)
T 4fom_A 246 VWSRLDGQWPDGLLA----------SDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH 303 (308)
T ss_dssp ECCBSSSCCCSSCBC----------STTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred EEEECCeECCCcEEE----------cCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence 999999877543211 1244566788999999999999999999999999999998875
No 32
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=264.40 Aligned_cols=311 Identities=13% Similarity=0.193 Sum_probs=179.6
Q ss_pred ecceEEEEEEEeeec--cchhHH-HHHHHH------HhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEE
Q psy16652 36 TGEKVTSVILLFKMS--VAGPSI-IVALSF------LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIW 106 (384)
Q Consensus 36 ~~~d~G~y~c~~~~~--~~~~~~-~~~~~~------~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W 106 (384)
+-.|.|.|.|.+... +..... ...... .+.....+..+.+...+..+.|.+|+++.|.|.+.+.|.+.+.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W 82 (423)
T 3qs7_E 3 GNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLW 82 (423)
T ss_dssp -----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEE
T ss_pred ccCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEE
Confidence 346889999997764 221111 111100 01111112223455556678899999999999999988889999
Q ss_pred EEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc
Q psy16652 107 MKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186 (384)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~ 186 (384)
++++..... ...+ .. ......+|.|.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|...
T Consensus 83 ~~~~~~l~~--------------~~~~--~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~p~~~ 144 (423)
T 3qs7_E 83 VFKHSSLNC--------------QPHF--DL-QNRGVVSMVILKMTETQAGEYLLFIQSEA-TNYTILFTVSIRNTLLYT 144 (423)
T ss_dssp EETTEEECC--------------CCBC--------CEEEEEESSCCSSSCSEEEEEEEC---CEEEEEEEEEEC-----C
T ss_pred EECCCccCc--------------ccee--cc-ccceEEEEEEeecCcccCEEEEEEEEcCC-CcEEEEEEEEEecCcccc
Confidence 997643110 0000 00 01223469999999999999999998654 456667788887665442
Q ss_pred cCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 187 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
. .....+..|+.+.|.|.+.|.|.|.+.|++++......... .......... +..+|+|.|+|.|.|..|......
T Consensus 145 ~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~-~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~ 221 (423)
T 3qs7_E 145 L--RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEE-SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221 (423)
T ss_dssp E--EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSCEEEEEECSSCEEEEEC
T ss_pred c--cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCcccccc-ccccccccceEEecccCeEEEEEEEcCCCCcceee
Confidence 1 22334567888899999999999999999987644221100 0001111111 157899999999999988765555
Q ss_pred EEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeeeeecc-CccccceEEEeecCC
Q psy16652 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATS-DEFSDTSLRVITIER 343 (384)
Q Consensus 266 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~ 343 (384)
+.|.|..+|.+ .+....+.+|+.+.|.|.+.| .|.|.+.|+++|..+.....+........ .......|.|.+++.
T Consensus 222 ~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 299 (423)
T 3qs7_E 222 FTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299 (423)
T ss_dssp EEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCT
T ss_pred EEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCH
Confidence 67777666654 344567889999999999998 67789999999988755433222111111 012345799999999
Q ss_pred CCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 344 RQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 344 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
+|+|.|+|.|.|. ...++.|.|.++|
T Consensus 300 ~D~G~Y~C~A~N~---~~~~~~L~V~~~p 325 (423)
T 3qs7_E 300 NDTGYYTCSSSKH---PSQSALVTIVEKG 325 (423)
T ss_dssp TTCEEEEEEETTE---EEEEEEEEEESSC
T ss_pred HHCEEEEEEEecC---CCceEEEEEEeCC
Confidence 9999999999998 6667777776654
No 33
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=5.1e-39 Score=309.14 Aligned_cols=361 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeee--
Q psy16652 1 FIAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYI-- 78 (384)
Q Consensus 1 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-- 78 (384)
+|.+.+.|++|+..+.... .......|.|.+++.+|+|.|+|.+.+..+.......+.+. ...+|.+...
T Consensus 357 ~p~~~v~W~~~g~~l~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~-----v~~~P~~~~~~~ 428 (772)
T 3v2a_R 357 YPPPEIKWYKNGIPLESNH---TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV-----VYVPPQIGEKSL 428 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCCCeEEEEECCEeCCCCc---eEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEE-----EecCCccccccc
Confidence 4678899999976654311 11245899999999999999999998764432211111111 1123333211
Q ss_pred -CcceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCccc----------------cee-c--cCceeeeCCceEEee
Q psy16652 79 -SQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPL----------------PIS-M--SGSLIIHDSRFQLTT 137 (384)
Q Consensus 79 -~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~----------------~~~-~--~~~~~~~~~~~~~~~ 137 (384)
.....+.+|+.++|.|.+.+.|.+. +.|++++.+...... .+. . +........++.+..
T Consensus 429 ~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~ 508 (772)
T 3v2a_R 429 ISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIE 508 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeecc
Confidence 1222378999999999998888775 999997543110000 000 0 000000111222212
Q ss_pred CCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEE
Q psy16652 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW 217 (384)
Q Consensus 138 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W 217 (384)
........|.|.++ +|+|.|+|.+.|..+ ..+..+.|.|..+|.+... +...+.+|+.+.|.|.+.+.|.+.+.|
T Consensus 509 ~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g-~~~~~~~l~V~~~p~i~~~--p~~~~~~G~~v~l~C~~~~~p~~~v~W 583 (772)
T 3v2a_R 509 GKNKTVSTLVIQAA--NVSALYKCEAVNKVG-RGERVISFHVTRGPEITLQ--PDMQPTEQESVSLWCTADRSTFENLTW 583 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceEEEEEEEeec--ccCeEEEEEEEcccc-ccceeEEEEEECCceeecc--CCcccccCCceEEEEeccCCCCCCcEE
Confidence 11223357888877 799999999986554 4556677777776655432 224477999999999999999899999
Q ss_pred EeCCCcccccCcee------------------------EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-e--eeEEEEEE
Q psy16652 218 RRDNSAALSTGGSI------------------------YRGNILKIPNITKTDRGTYYCVAQNGVGRG-M--KRNIAVEV 270 (384)
Q Consensus 218 ~~~~~~~~~~~~~~------------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~~l~v 270 (384)
++++..+....... .....|.|.+++.+|+|.|+|.|.|..+.. . ...+.+.+
T Consensus 584 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~ 663 (772)
T 3v2a_R 584 YKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc
Confidence 99886543221100 012249999999999999999999954432 2 22344444
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.|.|+++|..+..+.++.+.. ...+|.|.+++.+|+|.|+
T Consensus 664 ~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~ 736 (772)
T 3v2a_R 664 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKEDEGLYT 736 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC-------CCcEEEECcCCHHHCEEEE
Confidence 678888777777788999999999999999999999999999987766544331 3578999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeeeecCCccCCcc
Q psy16652 351 CKAANKYGSAQKEIELFDRETQTGDETFPIF 381 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~ 381 (384)
|.|.|..|..+.++.|.|.++|.....+..|
T Consensus 737 C~a~N~~G~~~~~~~l~V~~~p~~~~~~~~~ 767 (772)
T 3v2a_R 737 CQACSVLGCAKVEAFFIIEGAQEKTNLERTH 767 (772)
T ss_dssp -------------------------------
T ss_pred EEEEeCCcceeEEEEEEEECCCCcccccccc
Confidence 9999999999999999999998765544433
No 34
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=8.4e-36 Score=268.93 Aligned_cols=313 Identities=14% Similarity=0.182 Sum_probs=207.2
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHH--H--Hhhhh-cccCCCCeeeeC
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALS--F--LISLA-SSQRTPTISYIS 79 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~--~--~~~~~-~~~~~p~~~~~~ 79 (384)
.+.|++|+.++..... .....+.+|.|.+++.+|+|.|.|.+.+..+......... . .+... .+..+|.+..
T Consensus 120 ~v~W~k~g~~l~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~-- 196 (450)
T 1z7z_I 120 TVVLLRGEKELKREPA-VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS-- 196 (450)
T ss_dssp EEEEEETTEEEEEEEC-CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC--
T ss_pred EEEEeeCCEEeecccc-cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC--
Confidence 7899999876653331 1234567999999999999999999987633211000000 0 00000 0012232221
Q ss_pred cceeeeccCcEEEEEEeecC-C--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQYA-D--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
...+.+|+.+.|.|.+.+. | .+.+.|++++..... ++.... +.....+.+ +++.+|+
T Consensus 197 -~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~----------------~~~~~~--~~~~~~~~~-~v~~~d~ 256 (450)
T 1z7z_I 197 -PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----------------TVTYGN--DSFSAKASV-SVTAEDE 256 (450)
T ss_dssp -CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC----------------EEEEET--TEEEEEEEE-ECCGGGC
T ss_pred -ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc----------------eEEecC--CceeEEEEE-EeEhhhC
Confidence 1568999999999999987 6 689999998764211 111111 111112233 7899999
Q ss_pred e--eEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE
Q psy16652 157 G--IYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232 (384)
Q Consensus 157 G--~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~ 232 (384)
| .|+|.+.+.. +.......|.|.. +|.+. .....+.+|+.+.|.|.+. |.+.+.| ++..+....
T Consensus 257 G~~~Y~C~a~n~~-g~~~~~~~l~V~~~~~p~i~---~~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~~---- 324 (450)
T 1z7z_I 257 GTQRLTCAVILGN-QSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---- 324 (450)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEEC--------------------C----
T ss_pred CcEEEEEEEccCC-ccEEEEEEEEEecCCCCeEe---cCCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCCCC----
Confidence 9 9999998654 4455567777776 34333 2234689999999999997 7889999 565542211
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCC-Cc--eeeEEEEEEEecCeEEecC--CCcccccCCcEEEEEEEeccCCCeEEE
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVG-RG--MKRNIAVEVEFAPVITINR--PRQGQALQYDAILECHVEAYPPPAIVW 307 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~--~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W 307 (384)
....|.|..+..+|+|.|+|.|.|..+ .. ....+.|.|.++|.+.... ....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus 325 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W 404 (450)
T 1z7z_I 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKC 404 (450)
T ss_dssp CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEE
T ss_pred ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEE
Confidence 234799999999999999999997554 32 2467888899999876654 445788999999999999999999999
Q ss_pred EECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+++|..+... ...+ .++.+|+|.|+|.|.|..|....++.|.|..
T Consensus 405 ~~~g~~~~~~---------------g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 405 LKDGTFPLPI---------------GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp EETTTEECCT---------------TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EECCcccCCC---------------CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 9998743222 1122 5788999999999999999999999999875
No 35
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=5.1e-36 Score=257.81 Aligned_cols=277 Identities=17% Similarity=0.210 Sum_probs=196.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
...+|.+.. +....+.+|++++|.|.+.+. +.+.+.|++++... ....++.+. .+...|.
T Consensus 4 ~~~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~----~~~~~L~ 64 (317)
T 2y25_A 4 PFTGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--------------SVDEKHDFK----DGICTLL 64 (317)
T ss_dssp SSSCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE--------------CCSCC---------CCEEEE
T ss_pred ccCCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEc--------------CCCCcEEEE----CCeEEEE
Confidence 345677775 445789999999999999886 67899999976541 122333322 3346899
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----------cCCCeEEE
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----------FPAPTISW 217 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~v~W 217 (384)
|.+++.+|+|.|+|.+.+.. +.....+.|.|..++..... .....+.+|+.+.|.|.+.+ .|.+.+.|
T Consensus 65 i~~~~~~d~G~Y~C~~~n~~-g~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W 142 (317)
T 2y25_A 65 ITEFSKKDAGIYEVILKDDR-GKDKSRLKLVDEAFKELMME-VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNW 142 (317)
T ss_dssp ETTCCSTTCSCEEEEEESSS-CEEEEEECCSTHHHHHHHHH-HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEE
T ss_pred EccCCcccCeEEEEEEECCC-CcEEEEEEEEEecCcccccc-CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEE
Confidence 99999999999999997544 33444444444332221110 11122345555665555544 67889999
Q ss_pred EeCCCcccccCceeEe----ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--------------------c
Q psy16652 218 RRDNSAALSTGGSIYR----GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF--------------------A 273 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~ 273 (384)
++++..+......... ...|.|.+++.+|+|.|+|.+.|..+.. ...+.+.+.. .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 221 (317)
T 2y25_A 143 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221 (317)
T ss_dssp EESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred EECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence 9999887655443322 1359999999999999999999977764 4555555431 2
Q ss_pred CeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 274 PVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 274 p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
|.+.. .+....+..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+... ......|.|.+++.+|+|.|+|.
T Consensus 222 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~ 297 (317)
T 2y25_A 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFE----AGRTAYFTINGVSTADSGKYGLV 297 (317)
T ss_dssp CEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCB----TTTEEEEEEBSCCSTTCEEEEEE
T ss_pred CcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEc----CCCEEEEEECCCCHHHCEEEEEE
Confidence 33333 34446788999999999999999999999999999987776655421 01235899999999999999999
Q ss_pred EEeCCcceEEEEEEEEeee
Q psy16652 353 AANKYGSAQKEIELFDRET 371 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~~ 371 (384)
|.|..|..+.++.|.|..|
T Consensus 298 a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 298 VKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEeCCCeEEEEEEEEEEcC
Confidence 9999999999999998743
No 36
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=100.00 E-value=7.6e-35 Score=253.87 Aligned_cols=282 Identities=18% Similarity=0.252 Sum_probs=173.5
Q ss_pred CcceeeeccCcEEEEEEeecCC-----------CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD-----------DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~-----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
...+.+.+|+++.|.|.+.+.| .+.+.|++++....... .+.. .....++.... ..|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~-~~~~----~~~~~~~~~~~------~~L~ 82 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE-PINF----RLPENRISKEK------DVLW 82 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEE-ECCC----CCGGGCEEEET------TEEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccc-cccc----cccCceEeecC------CEEE
Confidence 4456689999999999998654 48999999885321000 0000 00112222221 2699
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC---CCceEEeecCceEEEEEEe-----cccCCCeEEEEe
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN---STRSVIVSEGQTVYLYCYA-----NGFPAPTISWRR 219 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~---~~~~~~~~~g~~~~l~C~~-----~~~~~~~v~W~~ 219 (384)
|.+++.+|+|.|+|.+.+. .+.....+.|.|..++..... .+....+.+|+.+.|.|.+ .+.|.+.+.|++
T Consensus 83 i~~~~~~D~G~Y~C~a~n~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k 161 (349)
T 4dep_C 83 FRPTLLNDTGNYTCMLRNT-TYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM 161 (349)
T ss_dssp ESSCCGGGCEEEEEEEECS-SCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE
T ss_pred EccCChhhCEEEEEEEecC-CceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee
Confidence 9999999999999999854 344556777888766543321 1335578899999999985 667889999999
Q ss_pred CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC-CCc--eeeEEEEEEEe------cCeEEecCCCc--ccccC
Q psy16652 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-GRG--MKRNIAVEVEF------APVITINRPRQ--GQALQ 288 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g 288 (384)
++..+.........+..|.|.+++.+|+|.|+|.+.|.. +.. .+..+.|.|.. +|.+....... .+..|
T Consensus 162 ~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G 241 (349)
T 4dep_C 162 GCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPG 241 (349)
T ss_dssp TTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC-------------
T ss_pred CCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecC
Confidence 998775544455566789999999999999999999976 332 25667777766 56665444332 67889
Q ss_pred CcEEEEEEEe----ccCCCeEEEEECCEEecC-CCceeeeeeec----cCccccceEEEeecCCCCC-eEEEEEEEeCCc
Q psy16652 289 YDAILECHVE----AYPPPAIVWIKDGVQIMN-NQHYSVSHFAT----SDEFSDTSLRVITIERRQF-GQYACKAANKYG 358 (384)
Q Consensus 289 ~~~~l~C~~~----~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~-G~Y~C~a~n~~g 358 (384)
+.+.|.|.+. +.|.|.+.|+++|..+.. ..++....... ........|.|.+++.+|. |.|+|.|.|..|
T Consensus 242 ~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G 321 (349)
T 4dep_C 242 EELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321 (349)
T ss_dssp ---CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSC
T ss_pred CcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCC
Confidence 9999999998 578899999999988865 33333322111 1111245699999999999 999999999999
Q ss_pred ceEEEEEEEEeeee
Q psy16652 359 SAQKEIELFDRETQ 372 (384)
Q Consensus 359 ~~~~~~~l~v~~~~ 372 (384)
....++.|.|..++
T Consensus 322 ~~~~~~~l~v~~~~ 335 (349)
T 4dep_C 322 EVAKAAKVKQKVPA 335 (349)
T ss_dssp EEEEECC-------
T ss_pred cEEEEEEEeeecCC
Confidence 99999999987643
No 37
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=7.2e-34 Score=252.67 Aligned_cols=281 Identities=22% Similarity=0.330 Sum_probs=213.5
Q ss_pred cccCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 68 SSQRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 68 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
.......+...|.+..+.+|++++|.|.+.+ .+.+.+.|++++..... ....++....+ ..|
T Consensus 17 ~~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~------------~~~~~~~~~~~-----~~l 79 (403)
T 3laf_A 17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILAL------------GMDDRKQQLPN-----GSL 79 (403)
T ss_dssp --CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCT------------TSCTTEEECTT-----SCE
T ss_pred CCceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECcc------------CCcccEEEecC-----CcE
Confidence 3455667788889999999999999999987 46778999997754210 01223322221 146
Q ss_pred EEeec-----CCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeC
Q psy16652 147 SIKEI-----QETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD 220 (384)
Q Consensus 147 ~i~~~-----~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~ 220 (384)
.|.++ +.+|+|.|+|.+.+...+ ..+..+.|.|..++.+.. .+....+.+|+++.|.|.+.+.|.+.+.|+++
T Consensus 80 ~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~-~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~ 158 (403)
T 3laf_A 80 LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKN 158 (403)
T ss_dssp EECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECS-CCCCEEEETTSCEEECCCEECSSCCEEEEEES
T ss_pred EEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCcccc-CCCcEEEEcCCeEEEEEEEcccCCCeEEEEEC
Confidence 67666 778999999999865433 346677888887776653 35567789999999999998888899999999
Q ss_pred CCcccccC---c-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe------EEecCCCcccccCCc
Q psy16652 221 NSAALSTG---G-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV------ITINRPRQGQALQYD 290 (384)
Q Consensus 221 ~~~~~~~~---~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~ 290 (384)
+..+.... . ....+..|.|.+++.+|+|.|+|.+.|..+...+..+.+.|...|. +...+....+.+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~ 238 (403)
T 3laf_A 159 QQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238 (403)
T ss_dssp SSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSC
T ss_pred CEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCc
Confidence 88764221 1 1223568999999999999999999998776555667777776653 333455667789999
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+.|.|.+.+.|.+.+.|++++..+.......... ....|.|.+++.+|.|.|+|.|.|..|....++.|.|..
T Consensus 239 ~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 311 (403)
T 3laf_A 239 AVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL-------GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311 (403)
T ss_dssp EEECCEEEEESCCEEEEEETTEECCCSSSSEEEE-------TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC-------CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC
Confidence 9999999999999999999999886544322211 356899999999999999999999999999999999988
Q ss_pred eec
Q psy16652 371 TQT 373 (384)
Q Consensus 371 ~~~ 373 (384)
+|.
T Consensus 312 ~p~ 314 (403)
T 3laf_A 312 PPW 314 (403)
T ss_dssp EEE
T ss_pred CCc
Confidence 753
No 38
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=2.7e-36 Score=271.32 Aligned_cols=324 Identities=17% Similarity=0.219 Sum_probs=207.4
Q ss_pred CceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeec-CCCc-c
Q psy16652 26 KPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQY-ADDY-P 103 (384)
Q Consensus 26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~ 103 (384)
+..+|.|.+++.+|+|.|.|.+........... ..+.......+|.+...+....+.+|+.+.|.|.+.+ .|.+ .
T Consensus 73 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~---~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~ 149 (438)
T 1qgc_4 73 TDFTLTIDPVEADDVATYYCQQSNEVPLTFGAG---TKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN 149 (438)
T ss_dssp TEEEEEESSCCGGGCEEEEEEECSSTTCCBCCC---EEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEE
T ss_pred CcEEEEeCCCcCcCCeeEEEEEecCCCccccCc---eeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcE
Confidence 456899999999999999999987532110000 0001112224666666554444557889999999977 4555 8
Q ss_pred EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC-
Q psy16652 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP- 182 (384)
Q Consensus 104 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~- 182 (384)
+.|++++.......... .......+..|.. ...|.|.+++.+|+|.|+|.+.+..+.. .+.+.+...
T Consensus 150 v~W~k~g~~~~~~~~~~--~~~~~~~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~ 217 (438)
T 1qgc_4 150 VKWKIDGSERQNGVLNS--WTDQDSKDSTYSM-------SSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNE 217 (438)
T ss_dssp EEEEETTEEECTTEEEE--EECCCTTTCCEEE-------EEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC
T ss_pred EEEEECCEEcCCCceec--cccccCCCCcEEE-------EEEEEEeCcccCCCCeEEEEEEecccCC---ceeccccccc
Confidence 99999775421110000 0000001122222 3479999999999999999998755432 233333321
Q ss_pred CccccCCCceEEeecCceEEEEEEecccC--CCeEEEEeC--CCcccc-----------------cCceeEe------cc
Q psy16652 183 PIISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRD--NSAALS-----------------TGGSIYR------GN 235 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~--~~~~~~-----------------~~~~~~~------~~ 235 (384)
+......+....+.+|+.+.|.|.+.+.| .+.+.|+++ +..+.. ..+.... ..
T Consensus 218 ~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 297 (438)
T 1qgc_4 218 CEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTL 297 (438)
T ss_dssp -CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEE
T ss_pred ceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeE
Confidence 11111123456789999999999999877 568999996 432210 1111111 23
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCC----ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eE
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGR----GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AI 305 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v 305 (384)
.|.|.+++.+|+|.|+|.|.|..+. .......+.|. .+|.+...++...+..|+.++|.|.+.|. |.+ .|
T Consensus 298 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 377 (438)
T 1qgc_4 298 YLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTV 377 (438)
T ss_dssp EEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEE
T ss_pred EEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEE
Confidence 8999999999999999999984331 11233456665 35666555555567789999999999997 887 99
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.|+++|..+......... ..+.....+.|+|..+..+| |.|+|.|.|..|.......|.
T Consensus 378 ~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 378 TWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp EEGGGTCCSSEEECCCEE--ETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred EEecCCCCCceeecCccc--cCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 999999876432111111 11111223568999999889 999999999999877666554
No 39
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=100.00 E-value=1.8e-34 Score=249.17 Aligned_cols=273 Identities=17% Similarity=0.210 Sum_probs=198.2
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC---------CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCce
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA---------DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST 143 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (384)
...........+.+|+++.|.|.+.+. +.+.+.|++++.... ...+. .. .
T Consensus 30 ~c~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~--------------~~~~~-~~------~ 88 (329)
T 3oq3_B 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR--------------PLNRR-VK------N 88 (329)
T ss_dssp TSEEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCE--------------ECSTT-EE------T
T ss_pred CcccCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCcc--------------ccCce-ee------c
Confidence 344455567779999999999998773 557899999886521 11111 11 2
Q ss_pred EEEEEeecCCCCCe-eEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-CCeEEEEeCC
Q psy16652 144 YILSIKEIQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRRDN 221 (384)
Q Consensus 144 ~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~ 221 (384)
.+|.|.+++.+|+| .|+|.+.+..+......+.+.+..+|.... ......+.+|+.+.|.|.+.+.| .+.+.|++++
T Consensus 89 ~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~ 167 (329)
T 3oq3_B 89 GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN 167 (329)
T ss_dssp TEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETT
T ss_pred ceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECC
Confidence 37999999999999 999999876544333333344444444221 11122356799999999999988 8999999999
Q ss_pred Cccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeC--CCCc---eeeEEEEEEEecC----eEEecCCCcccccCCcE
Q psy16652 222 SAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNG--VGRG---MKRNIAVEVEFAP----VITINRPRQGQALQYDA 291 (384)
Q Consensus 222 ~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~--~~~~---~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~ 291 (384)
..+... ......+..|.|.+++.+|+|.|+|.+.|. .+.. .+..+.|.|..+| .+. .+....+..|+.+
T Consensus 168 ~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~ 246 (329)
T 3oq3_B 168 QELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPA 246 (329)
T ss_dssp EECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCE
T ss_pred ccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCE
Confidence 877532 233344789999999999999999999986 5433 2334778887776 333 5566778899999
Q ss_pred EEEEEEeccC---CC-eEEEEECCEEe-cCCCceeeeeeeccCccccceEEEeecCCCCCe-EEEEEEEeCCcceEEEEE
Q psy16652 292 ILECHVEAYP---PP-AIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIE 365 (384)
Q Consensus 292 ~l~C~~~~~p---~~-~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~ 365 (384)
.|.|.+.+.| .+ .+.|+++|..+ ..+.+.......... .....|.|.+++.+|.| .|+|.|.|..|....++.
T Consensus 247 ~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~ 325 (329)
T 3oq3_B 247 NITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGG-ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTT 325 (329)
T ss_dssp EEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETT-EEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCc-eeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEE
Confidence 9999999988 77 88999999874 333332222111111 34678999999999999 999999999999999998
Q ss_pred EEEe
Q psy16652 366 LFDR 369 (384)
Q Consensus 366 l~v~ 369 (384)
|.|+
T Consensus 326 l~v~ 329 (329)
T 3oq3_B 326 VVLE 329 (329)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8873
No 40
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=251.94 Aligned_cols=288 Identities=17% Similarity=0.251 Sum_probs=189.1
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCC---CCceEEEEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP---ETSTYILSI 148 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~i 148 (384)
..+...+....+.+|+++.|.|.+.+. |.+.+.|++++.... ..+....+ ....|+....+. ......|.|
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~--~~i~~~~~---~~~~r~~~~~~~~~~~~~~~~L~I 78 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAR--ELIYNQKE---GHFPRVTTVSESTKRENMDFSISI 78 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTC--EEEEETTS---SCCTTEEECC---CTTCCBCCEEE
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCc--eEEEEcCC---CCcceeeeecccccccCceeEEEE
Confidence 456677788889999999999999886 778999999775421 11111111 012344433221 145567999
Q ss_pred eecCCCCCeeEEEEEEEccCcc----eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC--eEEEEeCCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNK----VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNS 222 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~ 222 (384)
.+++.+|+|.|+|.+.+..+.. ....+.|.|..+|..+....+...+.+|+.+.|.|.+.+.|++ .+.|++++.
T Consensus 79 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~ 158 (327)
T 2wng_A 79 SNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGN 158 (327)
T ss_dssp CSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCE
Confidence 9999999999999998764431 2345678887665432222223457889999999999887665 899999987
Q ss_pred cccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc--eeeEEEE--EEEecCeEEecCCCcccccCC
Q psy16652 223 AALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG--MKRNIAV--EVEFAPVITINRPRQGQALQY 289 (384)
Q Consensus 223 ~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~ 289 (384)
.+..... .....+.|.|.....+|+|.|+|.+.|..+.. ......+ .+..+|.+...+.. +.+|+
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~ 236 (327)
T 2wng_A 159 ELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAEN 236 (327)
T ss_dssp ECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTT
T ss_pred EccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCC
Confidence 7654321 11223467787777778899999999976653 2233333 45677877665444 77899
Q ss_pred cEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEE
Q psy16652 290 DAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIEL 366 (384)
Q Consensus 290 ~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l 366 (384)
.+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|.|..+..+|.|.|+|.|.|..|.. .+++.+
T Consensus 237 ~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~ 316 (327)
T 2wng_A 237 QVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL 316 (327)
T ss_dssp CCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred cEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence 99999999995 444 899999999886543222222122112223568888999999999999999999865 444443
Q ss_pred E
Q psy16652 367 F 367 (384)
Q Consensus 367 ~ 367 (384)
.
T Consensus 317 ~ 317 (327)
T 2wng_A 317 K 317 (327)
T ss_dssp C
T ss_pred E
Confidence 3
No 41
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=100.00 E-value=6.2e-36 Score=259.16 Aligned_cols=278 Identities=21% Similarity=0.361 Sum_probs=140.2
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+|.+.. +....+.+|++++|.|.+.+. |.+.+.|++++... ....++.+ ....|.|.+
T Consensus 9 ~p~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~--------------~~~~~~~~------~~~~L~i~~ 67 (334)
T 1ry7_B 9 GPEPGQ-QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--------------VPSERVLV------GPQRLQVLN 67 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCC-cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeC--------------CCcccEEe------ccceEEEee
Confidence 344444 777789999999999999876 56799999987642 11233322 134799999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCC----------------------cccc---CCCceEEeecCceEEEEE
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP----------------------IISD---NSTRSVIVSEGQTVYLYC 205 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~----------------------~~~~---~~~~~~~~~~g~~~~l~C 205 (384)
++.+|+|.|+|.+.+. +..+..+.|.|...+ .+.. .......+.+|+.+.|.|
T Consensus 68 v~~~D~G~Y~C~a~n~--~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C 145 (334)
T 1ry7_B 68 ASHEDSGAYSCRQRLT--QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRC 145 (334)
T ss_dssp -----------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEEC
T ss_pred cccccCEEEEEEEEeC--CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEE
Confidence 9999999999999866 445556666665432 1111 112345788999999999
Q ss_pred EecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec----CeE
Q psy16652 206 YANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA----PVI 276 (384)
Q Consensus 206 ~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~ 276 (384)
.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|... |.+
T Consensus 146 ~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~ 224 (334)
T 1ry7_B 146 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPIL 224 (334)
T ss_dssp CCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEECCCCSSCBC
T ss_pred EccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEecCCCCCCce
Confidence 9999899999999998776544321 1234589999999999999999999988764 66777887763 333
Q ss_pred Ee-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeeeecc----CccccceEEEeecCCCCCe
Q psy16652 277 TI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHFATS----DEFSDTSLRVITIERRQFG 347 (384)
Q Consensus 277 ~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~G 347 (384)
.. .+....+..|+.+.|.|.+.|.|.+.+.|++ +|..+..+........... .......|.|.+++.+|+|
T Consensus 225 ~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 304 (334)
T 1ry7_B 225 QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304 (334)
T ss_dssp CTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCS
T ss_pred EecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCE
Confidence 22 2345667889999999999999999999999 6776654433221111100 0112347999999999999
Q ss_pred EEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 348 QYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 348 ~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
.|+|.|.|..|....++.|.|...++
T Consensus 305 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 305 EYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp EEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred EEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 99999999999999999999987764
No 42
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=249.40 Aligned_cols=276 Identities=19% Similarity=0.221 Sum_probs=203.8
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+.+|.|...+....+.+|++++|.|.+.+. +.|++++.. ++.+.. ......|.|.
T Consensus 2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-------------------~~~~~~--~~~~~~L~i~ 56 (292)
T 4dkd_C 2 GSIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-------------------HWTLYS--DGSSSILSTN 56 (292)
T ss_dssp --CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-------------------SCEECC--BTTEEEEEES
T ss_pred CCCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-------------------ceEEec--cCceEEEEEc
Confidence 467888888888999999999999998763 899964432 111111 3345689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST 227 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~ 227 (384)
+++.+|+|.|+|.+.+..+ ..+..+.|.|..++......+....+.+|+.+.|.|.+.+ |. +.+.|++++......
T Consensus 57 ~~~~~d~G~Y~C~~~n~~~-~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~ 134 (292)
T 4dkd_C 57 NATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMR 134 (292)
T ss_dssp SCCGGGCSCEEECCCC-----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCS
T ss_pred ccccccCEEEEEEEccCCC-CcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCcccc
Confidence 9999999999999975443 3477788888877754444456778899999999999987 44 689999974333322
Q ss_pred -Ccee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEeccC
Q psy16652 228 -GGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAYP 301 (384)
Q Consensus 228 -~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~p 301 (384)
.... .....|.|.++..+|+|.|+|.+.|..+...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.|
T Consensus 135 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~ 214 (292)
T 4dkd_C 135 HTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD 214 (292)
T ss_dssp SCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESS
T ss_pred CCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCC
Confidence 2222 23446999999999999999999987776556678888887 88888877777778999999999999876
Q ss_pred CC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 302 PP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 302 ~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
++ .+.|++++..+.......... ......+.|.|.+++.+|+|.|+|.|.|..|..+.++.|.|......+
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~ 286 (292)
T 4dkd_C 215 VNFDVFLQHNNTKLAIPQQSDFHN---NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286 (292)
T ss_dssp SCCEEECCBSSCCCCCCBEEEEET---TEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred CceEEEEeCCCcccccCccceecc---ceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence 54 789999987765443322211 111234689999999999999999999999999999999998876544
No 43
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.9e-34 Score=258.02 Aligned_cols=312 Identities=12% Similarity=0.152 Sum_probs=203.3
Q ss_pred cchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee-eeCcceeee
Q psy16652 7 FDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS-YISQEQIKD 85 (384)
Q Consensus 7 ~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~ 85 (384)
.|++++.... +....+|.|.+++. |+| |.|.+.......... ..+... .+|.+. ..+.+..+.
T Consensus 36 ~w~k~~~~~~-------~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~~------~~l~V~-~~P~~~~~~~~~~~v~ 99 (450)
T 1z7z_I 36 PLPKKELLLP-------GNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTAK------TFLTVY-WTPERVELAPLPSWQP 99 (450)
T ss_dssp SSCEEECCSS-------TTTEEEEEEEEECS-CBC-CEEEEEETTEEEEEE------CEEEEE-BCCSEEEECCCCSEEC
T ss_pred eeeecceEec-------CCCceEEEEEeccc-CCe-eEEEEeCCCCcceeE------EEEEEE-eCCCcceecCCCceEe
Confidence 8999976433 12456999999988 999 999986431111000 000111 244444 556667899
Q ss_pred ccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEE
Q psy16652 86 IAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162 (384)
Q Consensus 86 ~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 162 (384)
+|+++.|.|.+.+.+++ .+.|++++.... .... ........|.|.+++.+|+|.|+|.
T Consensus 100 ~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~--------------~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~ 160 (450)
T 1z7z_I 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELK--------------REPA-----VGEPAEVTTTVLVRRDHHGANFSCR 160 (450)
T ss_dssp TTSEEEEEEEEECCBCGGGEEEEEEETTEEEE--------------EEEC-----CTTTEEEEEEEECCSSCSSCEEEEE
T ss_pred eCCeEEEEEEecCCCCCcCcEEEEeeCCEEee--------------cccc-----cccccceEEEEEeeccccCceEEEE
Confidence 99999999999987776 899999765421 0000 0023345899999999999999999
Q ss_pred EEEccCcc-------eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-C--CCeEEEEeCCCcccccCceeE
Q psy16652 163 VIISLNNK-------VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P--APTISWRRDNSAALSTGGSIY 232 (384)
Q Consensus 163 ~~~~~~~~-------~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~ 232 (384)
+.+..+.. .+....+.|...+...........+.+|+.+.|.|.+.+. | .+.+.|++++..+.. ....
T Consensus 161 a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~ 238 (450)
T 1z7z_I 161 TELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTY 238 (450)
T ss_dssp EEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEE
T ss_pred EEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEe
Confidence 99764421 1234455555432111100111568899999999999887 6 679999999877654 2222
Q ss_pred eccEEEEc---CCCCCCCe--EEEEEEEeCCCCceeeEEEEEEEe--cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652 233 RGNILKIP---NITKTDRG--TYYCVAQNGVGRGMKRNIAVEVEF--APVITINRPRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 233 ~~~~l~i~---~~~~~d~G--~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
....+.+. ++..+|+| .|+|.+.|..+.. .....|.|.. +|.+... ...+.+|+.+.|.|.+. |.|.+
T Consensus 239 ~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~-~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~l~C~~~--p~p~i 313 (450)
T 1z7z_I 239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILT--KPEVSEGTEVTVKCEAH--PRAKV 313 (450)
T ss_dssp ETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEES--CSEEETTCEEEEEEEC--------
T ss_pred cCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE-EEEEEEEEecCCCCeEecC--CeeEeCCCcEEEEEecC--CCCEe
Confidence 33333322 67899999 9999999987764 5567777776 5555443 45788999999999998 88899
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc----ceEEEEEEEEeeeecCC
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG----SAQKEIELFDRETQTGD 375 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~v~~~~~~~ 375 (384)
.| +|..+.... ....|.|..++.+|+|.|+|.|.|..+ ....++.|.|..+|...
T Consensus 314 ~W--~g~~~~~~~-------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~ 372 (450)
T 1z7z_I 314 TL--NGVPAQPLG-------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372 (450)
T ss_dssp ------------C-------------CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECC
T ss_pred EE--CCEEcCCCC-------------ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCcee
Confidence 99 776662111 234799999999999999999997665 34467888888776543
No 44
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.1e-34 Score=241.96 Aligned_cols=278 Identities=13% Similarity=0.139 Sum_probs=186.7
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.|........+.+|++++|.|.+.+. +.|++++.... .+..... ......+|.|.+++
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----------------~~~~~~~-~~~~~~~L~i~~~~ 59 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP----------------QEMAKAQ-DGTFSSVLTLTNLT 59 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS----------------EEEEECT-TSCEEEEEEECSCC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc----------------cceeccC-CCceeEEEEEccCC
Confidence 455555666778999999999998763 99999876521 1111111 12234689999999
Q ss_pred CCCCeeEEEEEEEccCcc--eeeeEEEEEecCCccccCCCce---EEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 153 ETDAGIYKCEVIISLNNK--VSAEVELIVRRPPIISDNSTRS---VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
.+|+|.|+|.+.+..+.. .+..+.|.|..+.......... ..+.+|+.+.|.|.+. .|.+.+.|++.+......
T Consensus 60 ~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~ 138 (289)
T 3mjg_X 60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP 138 (289)
T ss_dssp GGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC
T ss_pred hhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc
Confidence 999999999998655432 3344445544333222111222 6689999999999998 577889998865322211
Q ss_pred CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF--APVITINRPRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
... .....+. ..+|+|.|+|.+.+..+...+..+.+.+.. +|.+...+....+.+|+.+.|.|.+.|.|.+.+
T Consensus 139 ~~~-~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v 213 (289)
T 3mjg_X 139 VPY-DHQRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF 213 (289)
T ss_dssp CCE-ETTTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEE
T ss_pred eee-cCCcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcce
Confidence 111 1111122 357899999999987665545556676665 666666666677899999999999999999999
Q ss_pred EEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
.|++++........................|.|.+++.+|+|.|+|.|.|..|....+..|.|.+.+.....
T Consensus 214 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~~~~ 285 (289)
T 3mjg_X 214 EWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285 (289)
T ss_dssp EEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-----
T ss_pred EEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecCccc
Confidence 999887654332221111111111234578999999999999999999999999999999999988765443
No 45
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=248.39 Aligned_cols=259 Identities=16% Similarity=0.214 Sum_probs=192.0
Q ss_pred eeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 82 QIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
..+.+|+.+.|.|... +.|.+.+.|++++... ....++.+.. ......|.|.+++.+|+|.|+
T Consensus 11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i--------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 74 (312)
T 2y23_A 11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVST--------------EDSPRLEVES--KGNKTKMTFKDLGMDDLGIYS 74 (312)
T ss_dssp EEECTTCCEEEEEECSSCCTTCCEEEEETTEEC--------------TTCTTEEEEE--ETTEEEEEESSCCGGGCEEEE
T ss_pred EEEecCCeEEEEEEEeCCCCCcEEEEEECCEEC--------------CCCCCEEEEE--eCCEEEEEECcCCccCCEEEE
Confidence 4578999999999886 3578899999977542 2234565555 345568999999999999999
Q ss_pred EEEEEccCcceeeeEEEEEec------------CCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCccccc
Q psy16652 161 CEVIISLNNKVSAEVELIVRR------------PPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALST 227 (384)
Q Consensus 161 C~~~~~~~~~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~ 227 (384)
|.+.+..+... ...+.|.. +|.+.........+.+|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus 75 C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~ 152 (312)
T 2y23_A 75 CDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEG 152 (312)
T ss_dssp EEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSS
T ss_pred EEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeC
Confidence 99976554322 44455542 444433222367789999999999998 7889999999999877665
Q ss_pred CceeEec------cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE---------------------EecCeEEecC
Q psy16652 228 GGSIYRG------NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV---------------------EFAPVITINR 280 (384)
Q Consensus 228 ~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~ 280 (384)
....... ..|.|.+++.+|+|.|+|.+.+.... ....+.+ ..+|.+...
T Consensus 153 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 228 (312)
T 2y23_A 153 PKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY- 228 (312)
T ss_dssp SSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEE-
T ss_pred CcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceeec-
Confidence 4333221 24999999999999999999864332 2233333 122544322
Q ss_pred CCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 281 PRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..+.++.+.. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 229 ~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~-------~~~~L~I~~v~~~d~G~Y~C~a~N~~G~ 301 (312)
T 2y23_A 229 LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFSKKDAGIYEVILKDDRGK 301 (312)
T ss_dssp EEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCC
T ss_pred ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEEC-------CEEEEEECcCCHHHCEEEEEEEEcCCCc
Confidence 22567899999999999999998 999999999997666555431 3468999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16652 360 AQKEIELFDR 369 (384)
Q Consensus 360 ~~~~~~l~v~ 369 (384)
...++.|.++
T Consensus 302 ~~~~~~l~i~ 311 (312)
T 2y23_A 302 DKSRLKLVDE 311 (312)
T ss_dssp EEEEEEECSC
T ss_pred eeeeeEEEec
Confidence 9999998764
No 46
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=237.19 Aligned_cols=248 Identities=22% Similarity=0.280 Sum_probs=191.5
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++.... .....|.|.+
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~--------------------------~~~~~l~i~~ 54 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQ--------------------------TSTPSYRITS 54 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECS--------------------------CCSSEEEESS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEee--------------------------ccCCeEEEec
Confidence 4678888888899999999999999887766 999999765321 1123699999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
++.+|+|.|+|.+.+. ..+..+.|.|..++.... +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 55 ~~~~d~G~Y~C~~~~~---~~s~~~~l~v~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~--- 126 (262)
T 3rjd_A 55 ASVNDSGEYRCQRGLS---GRSDPIQLEIHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF--- 126 (262)
T ss_dssp CCGGGCEEEEEEESSS---CCCCCEEEEEECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE---
T ss_pred CCcccCeEEEEEEecC---CccccEEEEEeccceEec--CCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccc---
Confidence 9999999999998642 334567788876654332 334557899999999999 6777889999998876532
Q ss_pred eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCC-C--
Q psy16652 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPP-P-- 303 (384)
Q Consensus 230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~-- 303 (384)
......|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|.. +|.+...+ ...+.+|+.+.|.|.+.+.|. +
T Consensus 127 -~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~ 203 (262)
T 3rjd_A 127 -FHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGL 203 (262)
T ss_dssp -EEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC----
T ss_pred -cCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCc
Confidence 224568999999999999999999998754 36677888875 55565544 566889999999999999876 4
Q ss_pred --eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE---EEEEEEe
Q psy16652 304 --AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK---EIELFDR 369 (384)
Q Consensus 304 --~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~v~ 369 (384)
.+.|++++..+.... ....|.|..++.+|+|.|+|.|.|..|+... .+.|.|.
T Consensus 204 ~~~~~w~~~~~~~~~~~-------------~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~V~ 261 (262)
T 3rjd_A 204 QLYFSFYMGSKTLRGRN-------------TSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261 (262)
T ss_dssp -EEEEEEETTEEEEEEE-------------SCCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEECEE
T ss_pred cEEEEEEeCCcEecccC-------------CCceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEEEe
Confidence 378999998775221 3568999999999999999999999997532 3445443
No 47
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=100.00 E-value=2.2e-34 Score=247.33 Aligned_cols=274 Identities=19% Similarity=0.215 Sum_probs=197.7
Q ss_pred cceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 80 QEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
..+.+.+|+++.|.|.+.+.+ .+.+.|++++.... .. .....++.... ..|.|.+++.+|+|.
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~-----~~-----~~~~~~~~~~~------~~L~i~~v~~~D~G~ 76 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP-----VS-----TEQASRIHQHK------EKLWFVPAKVEDSGH 76 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSC-----SC-----CCTTSSSEECS------SBEECTTCCGGGCSC
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCc-----cc-----cccCCcEeccC------CeEEECCCChhhCEE
Confidence 355689999999999998876 77999999875421 00 01223333322 269999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEe-cCCccccCC--CceEEeecCceEEEEEEe------cccCCCeEEEEeCCCcccccC-
Q psy16652 159 YKCEVIISLNNKVSAEVELIVR-RPPIISDNS--TRSVIVSEGQTVYLYCYA------NGFPAPTISWRRDNSAALSTG- 228 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~-~~~~~~~~~--~~~~~~~~g~~~~l~C~~------~~~~~~~v~W~~~~~~~~~~~- 228 (384)
|+|.+.+.. +.....+.+.+. .+|.+.... .....+..|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 77 Y~C~a~n~~-g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~ 155 (315)
T 1itb_B 77 YYCVVRNSS-YCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI 155 (315)
T ss_dssp CEECCCSSS-CCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSS
T ss_pred EEEEEeCCc-eEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccc
Confidence 999998543 333344444433 333332111 123568899999999998 788889999999998775432
Q ss_pred ceeEeccEEEEcCCCCCCCeEEEEEEE-eCCCCce--eeEEEEEEE-----ecCeEEecCCC-cccccCCcEEEEEEEec
Q psy16652 229 GSIYRGNILKIPNITKTDRGTYYCVAQ-NGVGRGM--KRNIAVEVE-----FAPVITINRPR-QGQALQYDAILECHVEA 299 (384)
Q Consensus 229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~ 299 (384)
.....+..|.|.+++.+|+|.|+|.+. |..|... +..+.+.+. .+|.+...+.. ..+.+|+.+.|.|.+.|
T Consensus 156 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g 235 (315)
T 1itb_B 156 HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTG 235 (315)
T ss_dssp SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEE
T ss_pred eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEec
Confidence 334456799999999999999999999 6666643 233444333 56766544433 46789999999999999
Q ss_pred cCCCeEEEEECCEEecCCCceeeeeeeccC-------ccccceEEEeecCCCC-CeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSD-------EFSDTSLRVITIERRQ-FGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 300 ~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.|.|.+.|+++|..+............... ....+.|.|.+++.+| +|.|+|.|.|..|....++.|.|+.
T Consensus 236 ~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 236 QLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314 (315)
T ss_dssp CTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred CCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEecC
Confidence 999999999999999876543322211100 0124589999999999 9999999999999999999998853
No 48
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=6e-34 Score=253.26 Aligned_cols=281 Identities=21% Similarity=0.368 Sum_probs=208.2
Q ss_pred ccCCCCeeee-CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 69 SQRTPTISYI-SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 69 ~~~~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
...+|.+... +....+.+|++++|.|.+.+.|.+.+.|++++..... ....++.+.. ....|.
T Consensus 13 ~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~------------~~~~~~~~~~----~~~~l~ 76 (404)
T 3p3y_A 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI------------AKDPRVSMRR----RSGTLV 76 (404)
T ss_dssp CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCG------------GGCSSCBCCS----SSCCCB
T ss_pred ccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeee------------ecCCcceEec----CCceEE
Confidence 4467777754 6667899999999999998888889999997754210 0111222211 122344
Q ss_pred Ee----ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC
Q psy16652 148 IK----EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS 222 (384)
Q Consensus 148 i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~ 222 (384)
|. +++.+|+|.|+|.+.+..+...+..+.|.|..+|...........+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus 77 i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~ 156 (404)
T 3p3y_A 77 IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM 156 (404)
T ss_dssp CCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTS
T ss_pred EEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCc
Confidence 43 7889999999999987665555677889998887766555556789999999999998 778889999999875
Q ss_pred cccccCcee--EeccEEEEcCCCCCC-CeEEEEEEEeCCCCcee--eEEEEEEEecC-------eEEecC---CCccccc
Q psy16652 223 AALSTGGSI--YRGNILKIPNITKTD-RGTYYCVAQNGVGRGMK--RNIAVEVEFAP-------VITINR---PRQGQAL 287 (384)
Q Consensus 223 ~~~~~~~~~--~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~--~~~~l~v~~~p-------~~~~~~---~~~~~~~ 287 (384)
......... ..+..|.|.++..+| +|.|+|.+.|..+.... ..+.+.+...+ .+.... ....+..
T Consensus 157 ~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~ 236 (404)
T 3p3y_A 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLR 236 (404)
T ss_dssp CBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEET
T ss_pred cccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEec
Confidence 544333222 235689999999999 59999999997775422 23445554332 221111 1234778
Q ss_pred CCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 288 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
|+.+.|.|.+.|.|.+.+.|+++|..+....... . .....|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 237 G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~-------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 308 (404)
T 3p3y_A 237 GMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF-E-------NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR 308 (404)
T ss_dssp TSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEE-E-------GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred CCCEEEEEEECCCCCCcEEEEECCEECCCCcccc-c-------ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEE
Confidence 9999999999999999999999999886554311 1 1357899999999999999999999999999999999
Q ss_pred Eeeeec
Q psy16652 368 DRETQT 373 (384)
Q Consensus 368 v~~~~~ 373 (384)
|..+|.
T Consensus 309 V~~~p~ 314 (404)
T 3p3y_A 309 VKAAPY 314 (404)
T ss_dssp EEEEEE
T ss_pred EeCCCe
Confidence 988763
No 49
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.4e-33 Score=247.36 Aligned_cols=277 Identities=20% Similarity=0.280 Sum_probs=197.9
Q ss_pred cCCCCeeeeCcceee---eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 70 QRTPTISYISQEQIK---DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
...|.+...|....+ .+|+.+.|.|.+.+.|.+.+.|++++..... ..+.++.+.. ..|
T Consensus 3 ~~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~------------~~~~~~~~~~------g~l 64 (384)
T 3kld_A 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDI------------GMDFRYSVVD------GSL 64 (384)
T ss_dssp CEEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----------------CEEEET------TEE
T ss_pred CCCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcC------------CCCccEEEEC------CEE
Confidence 345677777777765 5889999999999999999999997754210 0122333221 146
Q ss_pred EEeec-CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcc
Q psy16652 147 SIKEI-QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAA 224 (384)
Q Consensus 147 ~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~ 224 (384)
.|.+. +.+|+|.|+|.+.|..+...+....+.+...+...........+.+|+.+.|.|.+. +.+.+.+.|++++..+
T Consensus 65 ~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~ 144 (384)
T 3kld_A 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS 144 (384)
T ss_dssp EEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEEC
T ss_pred EEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCC
Confidence 67665 789999999999987665555666666655444443334557789999999999764 4567799999988766
Q ss_pred cccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCcee--eEEEEEEE-------ecCeEEe-cCCCcccccCCcEE
Q psy16652 225 LSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMK--RNIAVEVE-------FAPVITI-NRPRQGQALQYDAI 292 (384)
Q Consensus 225 ~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~ 292 (384)
........ ....|.|.++..+|+|.|+|.+.|..+.... ....+.+. ..|.+.. .+....+.+|+.+.
T Consensus 145 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~ 224 (384)
T 3kld_A 145 YQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVK 224 (384)
T ss_dssp CCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEE
T ss_pred EeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEE
Confidence 54433332 3457999999999999999999997765311 11122221 2343333 34455678899999
Q ss_pred EEEEEeccCCCeEEEEECC-EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 293 LECHVEAYPPPAIVWIKDG-VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 293 l~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
|.|.+.|.|.|.+.|++++ ..+....+.. .....|.|.+++.+|+|.|+|.|.|..|.......|.|..+
T Consensus 225 l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~ 295 (384)
T 3kld_A 225 LECFALGNPVPTILWRRADGKPIARKARRH---------KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ 295 (384)
T ss_dssp EEEEEEEESCCEEEEEETTCCCCCTTCEEC---------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEEEEeecCCCcEEEEeCCCccccccceec---------CCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecC
Confidence 9999999999999999954 4443322111 13568999999999999999999999999999999988877
Q ss_pred ec
Q psy16652 372 QT 373 (384)
Q Consensus 372 ~~ 373 (384)
|.
T Consensus 296 P~ 297 (384)
T 3kld_A 296 PN 297 (384)
T ss_dssp EE
T ss_pred Cc
Confidence 64
No 50
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=2.1e-35 Score=265.77 Aligned_cols=316 Identities=12% Similarity=0.132 Sum_probs=195.9
Q ss_pred CceEEEEEeeecceEEEEEEEeeeccch--hHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCc
Q psy16652 26 KPIRFFIHEVTGEKVTSVILLFKMSVAG--PSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDY 102 (384)
Q Consensus 26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~ 102 (384)
+..+|.|.+++.+|+|.|.|.+...... .... .. .+........+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus 77 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~-~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p 154 (444)
T 1igt_B 77 NTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQ-GT-TVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP 154 (444)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBC-CE-EEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC
T ss_pred CeEEEEECCCCHHHCEEEEEEEecCCcccccccC-cE-EEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCC
Confidence 4679999999999999999998764211 0000 00 00000012234555544444446899999999999874 554
Q ss_pred -cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE--
Q psy16652 103 -PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV-- 179 (384)
Q Consensus 103 -~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v-- 179 (384)
.+.|++++.... ...... ....+.|... ..|.|.+++.+| |.|+|.+.+..+.. .....+.+
T Consensus 155 ~~v~W~~~~~~~~-----~~~~~~-~~~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~ 219 (444)
T 1igt_B 155 VTLTWNSGSLSSG-----VHTFPA-VLQSDLYTLS-------SSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRG 219 (444)
T ss_dssp CEEEEGGGTBCTT-----EEECCC-EEETTEEEEE-------EEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCC
T ss_pred cEEEEecCCCCCC-----eEecCc-cccCCcEEEE-------EEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCC
Confidence 999999775421 000000 0111333332 369999999999 99999998765542 22222211
Q ss_pred ----------------ecCCccccCCCceEE-eecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---------
Q psy16652 180 ----------------RRPPIISDNSTRSVI-VSEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG--------- 229 (384)
Q Consensus 180 ----------------~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~--------- 229 (384)
..+|.+....+.... +.+|+++.|.|.+.|.+ .+.+.|++++..+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~ 299 (444)
T 1igt_B 220 PTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299 (444)
T ss_dssp CSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSS
T ss_pred CCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCC
Confidence 112222111121111 47899999999998873 358999999876543211
Q ss_pred eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-e
Q psy16652 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-A 304 (384)
Q Consensus 230 ~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~ 304 (384)
.......|.|.+++.+|+|.|+|.|.|..+... ...+.+ .+..+|.+.+.+.......+..++|.|.+.| +|++ .
T Consensus 300 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~ 379 (444)
T 1igt_B 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIY 379 (444)
T ss_dssp SEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCE
T ss_pred cEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCE
Confidence 112345799999999999999999999877641 233333 4557888776554433334445999999998 5665 8
Q ss_pred EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 305 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
|.|+++|..+.............+.....+.|.|.....+|.|.|+|.|.|..-
T Consensus 380 v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 380 VEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp EEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred EEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 999999998843211111111111111234567777777889999999999864
No 51
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=247.39 Aligned_cols=285 Identities=15% Similarity=0.211 Sum_probs=207.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEee-------cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCC
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQ-------YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPET 141 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (384)
...+|.+...+....+.+|+++.|.|.+. +.+.+.+.|++++.... +.. ....++...
T Consensus 15 ~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~-----~~~-----~~~~~~~~~----- 79 (339)
T 3o4o_C 15 ARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSART-----VPG-----EEETRMWAQ----- 79 (339)
T ss_dssp ---CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSC-----CSC-----CSSSCEEEE-----
T ss_pred chhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcc-----cCc-----cccccEEee-----
Confidence 44678899999999999999999999997 77888999999876521 000 012233222
Q ss_pred ceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc-CCCceEEeecCceEEEEEE-----ecccCCCeE
Q psy16652 142 STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD-NSTRSVIVSEGQTVYLYCY-----ANGFPAPTI 215 (384)
Q Consensus 142 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~~~l~C~-----~~~~~~~~v 215 (384)
...|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..++.... .......+.+|+.+.|.|. +.+.|.+.+
T Consensus 80 -~~~L~i~~v~~~D~G~Y~C~~~n~~-g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v 157 (339)
T 3o4o_C 80 -DGALWLLPALQEDSGTYVCTTRNAS-YCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157 (339)
T ss_dssp -TTEEEESSBCTTCCEEEECCEEETT-EEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCB
T ss_pred -CCeEEECCCCcccCEEEEEEEECCc-ceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceE
Confidence 1269999999999999999998654 4566778888887654321 1123356889999999999 778888999
Q ss_pred EEEeCCCcccccCcee-Ee--ccEEEEcCCCCCCCeEEEEEEEeCCCC---ceeeEEEEEEEe-----cCeEEecCCCcc
Q psy16652 216 SWRRDNSAALSTGGSI-YR--GNILKIPNITKTDRGTYYCVAQNGVGR---GMKRNIAVEVEF-----APVITINRPRQG 284 (384)
Q Consensus 216 ~W~~~~~~~~~~~~~~-~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~~ 284 (384)
.|++++..+....... .. ...|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|.. +|.+...+....
T Consensus 158 ~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~ 237 (339)
T 3o4o_C 158 QWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237 (339)
T ss_dssp CCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCC
T ss_pred EEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeE
Confidence 9999998776543322 22 248999999999999999999997664 235667777764 456666666677
Q ss_pred cccCCcEEEEEEE---eccC-CCeEEEEECCEEecCCC---ceeeeee----eccCccccceEEEeecCCCCC-eEEEEE
Q psy16652 285 QALQYDAILECHV---EAYP-PPAIVWIKDGVQIMNNQ---HYSVSHF----ATSDEFSDTSLRVITIERRQF-GQYACK 352 (384)
Q Consensus 285 ~~~g~~~~l~C~~---~~~p-~~~v~W~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~l~i~~~~~~d~-G~Y~C~ 352 (384)
+..|+.+.|.|.+ .|.| .+.+.|+++|..+.... +...... ..+.......|.|.+++.+|. |.|+|.
T Consensus 238 v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~ 317 (339)
T 3o4o_C 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317 (339)
T ss_dssp CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEE
T ss_pred eccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEE
Confidence 8899999999999 8999 78999999998764321 1111100 011111122799999999997 999999
Q ss_pred EEeCCcceEEEEEEEEee
Q psy16652 353 AANKYGSAQKEIELFDRE 370 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~ 370 (384)
|.|..|+.+..++|.+..
T Consensus 318 a~N~~G~~~~~~~~~~~~ 335 (339)
T 3o4o_C 318 VHNTLSFQTLRTTVKEHH 335 (339)
T ss_dssp EEETTEEECCBCCCCC--
T ss_pred EEeccCceEEEEEhhHhc
Confidence 999999999888776543
No 52
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=4.9e-33 Score=246.62 Aligned_cols=279 Identities=18% Similarity=0.237 Sum_probs=200.7
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
..+|.+...+....+.+|+.++|.|.+.+ .+.+.+.|++++...... ..++.. .....+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~-------------~~~~~~----~~~~~~L~i 66 (395)
T 1bih_A 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQ-------------EHNAAL----RKDEGSLVF 66 (395)
T ss_dssp -CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTT-------------TTTEEE----CTTSCCEEE
T ss_pred CCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccc-------------cceEEE----ecCCceEEE
Confidence 46788998899999999999999999998 788899999987653111 001111 122346999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC---
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS--- 222 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~--- 222 (384)
.+++.+|+|.|+|.+.+..+...+..+.|.+.. .|.+ .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus 67 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~---~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~ 143 (395)
T 1bih_A 67 LRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA---KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGAD 143 (395)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCC---EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSC
T ss_pred ecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCc---CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcC
Confidence 999999999999999876554444445555442 2322 2345567899999999996 788889999999862
Q ss_pred cccc----cCc-eeEeccEEEEcCCCCCCCe---EEEEEEEeCCCCceeeEEEEEEE------------ecCeEEecCCC
Q psy16652 223 AALS----TGG-SIYRGNILKIPNITKTDRG---TYYCVAQNGVGRGMKRNIAVEVE------------FAPVITINRPR 282 (384)
Q Consensus 223 ~~~~----~~~-~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~l~v~------------~~p~~~~~~~~ 282 (384)
.... ... ....++.|.|.+++.+|+| .|+|.+.|..+..........+. .+|.+ .+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~ 221 (395)
T 1bih_A 144 PNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKD 221 (395)
T ss_dssp GGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCS
T ss_pred cccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCc
Confidence 1111 111 1223557999999999999 99999999877643221111111 12222 3455
Q ss_pred cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE
Q psy16652 283 QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 362 (384)
..+.+|+.+.|.|.+.|.|.+.+.|+++|..+.......+... .......|.|.+++.+|+|.|+|.|.|..|....
T Consensus 222 ~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 298 (395)
T 1bih_A 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH---NRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298 (395)
T ss_dssp EEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESC---SSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred eEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEE---ecCCCceEEEccCChhhCEEEEEEEEeCCCCceE
Confidence 6788999999999999999999999999998876543332211 1112347999999999999999999999999766
Q ss_pred -EEEEEEeeeec
Q psy16652 363 -EIELFDRETQT 373 (384)
Q Consensus 363 -~~~l~v~~~~~ 373 (384)
++.|.|..+|.
T Consensus 299 ~~~~l~V~~~P~ 310 (395)
T 1bih_A 299 HSLKLTVVSAPK 310 (395)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEcCCc
Confidence 88888887754
No 53
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=100.00 E-value=7.7e-33 Score=250.93 Aligned_cols=319 Identities=14% Similarity=0.144 Sum_probs=197.3
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccch--h--HHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAG--P--SIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA- 99 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~--~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~- 99 (384)
.+..+|.|.+++.+|+|.|+|.+...... . ...... .+........+|.+...+.. .+.+|+.++|.|.+.+.
T Consensus 77 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~ 154 (475)
T 1iga_A 77 ATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGT-LVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFF 154 (475)
T ss_pred CCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCce-EEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeec
Confidence 34579999999999999999998764321 0 000000 00000112234555543322 23689999999999886
Q ss_pred CC--ccEEEEEeCCCCCCcccceeccCcee-eeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEE
Q psy16652 100 DD--YPVIWMKMDTAKKMEPLPISMSGSLI-IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVE 176 (384)
Q Consensus 100 ~~--~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 176 (384)
|. ..+.|++++.... ........ ..++.|... ..|.|.++..+|+|.|+|.+.+..+......+.
T Consensus 155 P~~p~~v~W~~~~~~~~-----~~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~ 222 (475)
T 1iga_A 155 PQEPLSVTWSESGQGVT-----ARNFPPSQDASGDLYTTS-------SQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVP 222 (475)
T ss_pred CCCceEEEEcCCCcccc-----eEeCCceecCCCCcEEEE-------EEEEechhHcCCCceEEEEEEECCCCceeeeEe
Confidence 44 3999998663210 00000000 122333332 258999999999999999999776533334444
Q ss_pred EEEe------------------cCCccccCCCceEEeecCceEEEEEEecccCC---CeEEEEeCCCccccc--------
Q psy16652 177 LIVR------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA---PTISWRRDNSAALST-------- 227 (384)
Q Consensus 177 l~v~------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~-------- 227 (384)
+.|. .+|.+....+....+.+|+.+.|.|.+.+.++ +.+.| + +..+...
T Consensus 223 l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~ 300 (475)
T 1iga_A 223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERD 300 (475)
T ss_pred cccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccCceEC
Confidence 3331 12222112222223578999999999987644 58999 4 3333211
Q ss_pred -CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE---EEecCeEEecCCC-cccccCCcEEEEEEEeccCC
Q psy16652 228 -GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE---VEFAPVITINRPR-QGQALQYDAILECHVEAYPP 302 (384)
Q Consensus 228 -~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~ 302 (384)
.+.....+.|.|.++..+|+|.|+|.|.|..+.. .....|. +..+|.+.+.+.. ..+..|+.+.|.|.+.|.++
T Consensus 301 ~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P 379 (475)
T 1iga_A 301 LCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSP 379 (475)
T ss_pred CCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC-ceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeEC
Confidence 1111234579999999999999999999987764 2233442 3567877665544 34678899999999998533
Q ss_pred --CeEEEEECCEEecCCCceee--eee---eccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 303 --PAIVWIKDGVQIMNNQHYSV--SHF---ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 303 --~~v~W~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.|.|+++|..+........ ... ..+.....+.|.|.....+|.|.|+|.|.|.....
T Consensus 380 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 380 KDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL 444 (475)
T ss_pred CCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCCC
Confidence 49999999999875531111 111 11111223567777777889999999999987553
No 54
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.1e-32 Score=243.35 Aligned_cols=274 Identities=21% Similarity=0.276 Sum_probs=205.4
Q ss_pred CCCCeeeeCcceee---eccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 71 RTPTISYISQEQIK---DIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 71 ~~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
.+|.|...|....+ .+|++++|.|.+.+.|.+.+.|++++..... ....++.+.. ..|.
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~------------~~~~~~~~~~------~~L~ 64 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKM------------GPDSRYRLVA------GDLV 64 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCC------------STTSSEEEET------TEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCc------------CCCccEEeeC------CeEE
Confidence 36778888888776 7899999999998888889999997754210 0123444322 2699
Q ss_pred EeecCC-CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc
Q psy16652 148 IKEIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL 225 (384)
Q Consensus 148 i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~ 225 (384)
|.++.. +|+|.|+|.+.+..+...+..+.|.|...+...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 65 i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~ 144 (382)
T 1cs6_A 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF 144 (382)
T ss_dssp EESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB
T ss_pred EecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc
Confidence 999997 999999999987665545556777776655554444566789999999999996 456788999999987643
Q ss_pred c--cCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCce----eeEEEEEEE------ecCeEEec-CCCcccccCCc
Q psy16652 226 S--TGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGM----KRNIAVEVE------FAPVITIN-RPRQGQALQYD 290 (384)
Q Consensus 226 ~--~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~ 290 (384)
. ...... ....|.|.+++.+|+|.|+|.+.|..+... +..+.+.+. .+|.+... +....+..|+.
T Consensus 145 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~ 224 (382)
T 1cs6_A 145 IPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224 (382)
T ss_dssp CCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCC
T ss_pred cccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCe
Confidence 2 112211 235799999999999999999998764321 222344432 24555443 44567889999
Q ss_pred EEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 291 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+.|.|.+.+.|.+.+.|++++..+... .......|.|.+++.+|.|.|+|.|.|..|.....+.|.|..
T Consensus 225 v~l~C~~~g~p~~~i~W~~~~~~~~~~-----------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 293 (382)
T 1cs6_A 225 VTLECFAFGNPVPQIKWRKLDGSQTSK-----------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293 (382)
T ss_dssp EEEECEEEEESCCEEEEEECCSCCSCC-----------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEEEEccCCCCEEEEEECCcccccE-----------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 999999999999999999988765431 112467899999999999999999999999999999999987
Q ss_pred eec
Q psy16652 371 TQT 373 (384)
Q Consensus 371 ~~~ 373 (384)
+|.
T Consensus 294 ~p~ 296 (382)
T 1cs6_A 294 QPD 296 (382)
T ss_dssp EEE
T ss_pred CCC
Confidence 764
No 55
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=1.6e-33 Score=246.74 Aligned_cols=269 Identities=16% Similarity=0.183 Sum_probs=189.8
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCc-c-cceeccCceeeeCCceEEeeCC-CCceEEEEEeecCCCCCee
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKME-P-LPISMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~ 158 (384)
+.+.+|++++|.|.+.+.+.+.+.|++++...... . ..+.... .....|+.+..+. ..+..+|.|.+++.+|+|.
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGP--SKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECS--STTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCC--cccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 45789999999999988888899999987531100 0 0000000 0112344332200 1234579999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~ 238 (384)
|+|.+.+. ...+.|.|..... .+...+.+|+++.|.|.+.+.|.+.+.|++++..+ ......|.
T Consensus 82 Y~C~~~n~-----~~~~~l~V~~~~~-----~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~ 145 (363)
T 1wio_A 82 YICEVEDQ-----KEEVQLLVFGLTA-----NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLS 145 (363)
T ss_dssp EEEEETTE-----EEEEEEEEEEEEE-----SSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEE
T ss_pred EEEEEEEC-----CCcEEEEEEeCCC-----CCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEE
Confidence 99998643 2356666654211 11124689999999999988888999999987653 33567899
Q ss_pred EcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-----cCCCeEEEEECCEE
Q psy16652 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-----YPPPAIVWIKDGVQ 313 (384)
Q Consensus 239 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~ 313 (384)
|.+++.+|+|.|+|.+.+..+.. ...+.+.|...|... ....+.+|+.+.|.|.+.+ .|.|.+.|+++|..
T Consensus 146 i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~ 221 (363)
T 1wio_A 146 VSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS 221 (363)
T ss_dssp ECSBCGGGCEECEEEEEETTEEE-EECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCC
T ss_pred EeeCChhcCCEEEEEEecCCCeE-EEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCC
Confidence 99999999999999999864432 455566666555432 3455778999999998877 78889999999988
Q ss_pred ecC--------CCceeeeeeecc-----CccccceEEEeecCCCCCeEEEEEEEeC--CcceEEEEEEEEeeee
Q psy16652 314 IMN--------NQHYSVSHFATS-----DEFSDTSLRVITIERRQFGQYACKAANK--YGSAQKEIELFDRETQ 372 (384)
Q Consensus 314 ~~~--------~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~~~ 372 (384)
+.. +.++.+...... .......|.|.+++.+|+|.|+|.|.|. .|.....+.|.|...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~ 295 (363)
T 1wio_A 222 SSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT 295 (363)
T ss_dssp CCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC
T ss_pred ccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec
Confidence 765 333333221110 0112458999999999999999999999 9999999999887554
No 56
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=7e-33 Score=266.44 Aligned_cols=310 Identities=18% Similarity=0.238 Sum_probs=119.1
Q ss_pred ceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe---eeeCcceeeecc--CcEEEEEEeecCCC
Q psy16652 27 PIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI---SYISQEQIKDIA--QTADLKCSVQYADD 101 (384)
Q Consensus 27 ~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~v~~g--~~v~l~C~~~~~~~ 101 (384)
..+|.|.+++.+|+|.|.|.+.......... +.+ . ....|.+ ...+....+.+| ++++|.|.+.+ +.
T Consensus 85 ~~~l~I~~~~~~d~G~Y~C~~~~~~~~~~~~----v~v--~-~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~ 156 (772)
T 3v2a_R 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIY----VYV--Q-DYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SN 156 (772)
T ss_dssp ------------------------------------------------------CEEEEEEESSCCCEEEECCCCSC-SS
T ss_pred EEEEEECCCcHhhCEeEEEEEcCCCEEEEEE----EEE--C-CCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CC
Confidence 5699999999999999999987321111111 111 1 1112222 223445668889 88999999876 66
Q ss_pred ccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEE
Q psy16652 102 YPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179 (384)
Q Consensus 102 ~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 179 (384)
..+.|+++ +..... .+..+... ....|.|.+++.+|+|.|+|.+.+......+....+.+
T Consensus 157 ~~v~w~~~~~~~~~~~-------------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v 218 (772)
T 3v2a_R 157 LNVSLCARYPEKRFVP-------------DGNRISWD-----SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218 (772)
T ss_dssp CCEEEEEETTTEEECC-------------CSSSCEEE-----TTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEE
T ss_pred cEEEEEecCCCccccC-------------CCceeecC-----CCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEE
Confidence 79999997 432100 01111111 11259999999999999999998643333333344544
Q ss_pred ecCC--ccccCCCceEEeecCceEEEEEEecc--cCCCeEEEEeCCCcccccC------------ceeEeccEEEEcCCC
Q psy16652 180 RRPP--IISDNSTRSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALSTG------------GSIYRGNILKIPNIT 243 (384)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~------------~~~~~~~~l~i~~~~ 243 (384)
...+ .+....+....+.+|+.+.|.|.+.+ .+.+.+.|++++..+.... ........|.|.+++
T Consensus 219 ~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 298 (772)
T 3v2a_R 219 VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298 (772)
T ss_dssp ECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCC
T ss_pred ecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCC
Confidence 4322 22222233467899999999999976 4456899999887643321 112244589999999
Q ss_pred CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecC---CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCce
Q psy16652 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINR---PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 320 (384)
.+|+|.|+|.+.|..+.. +..+.|.|..+|.+...+ ....+.+|+.+.|.|.+.++|.+.+.|+++|..+......
T Consensus 299 ~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~ 377 (772)
T 3v2a_R 299 RSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI 377 (772)
T ss_dssp STTCSEEEEEEECSSCEE-EEEEEEEEECCCC------------------------------------------------
T ss_pred cCCCeEEEEEEEcCCcce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceE
Confidence 999999999999987754 678889999888765433 3466788999999999999999999999999888653221
Q ss_pred eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEeeeec
Q psy16652 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDRETQT 373 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~~~ 373 (384)
. ....|.|..++.+|+|.|+|.|.|..|... ..+.|.|..+|.
T Consensus 378 ~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~ 422 (772)
T 3v2a_R 378 K----------AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ 422 (772)
T ss_dssp -------------------------------------------------------
T ss_pred c----------cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCc
Confidence 1 347899999999999999999999998764 456666665554
No 57
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=5.7e-32 Score=239.19 Aligned_cols=275 Identities=16% Similarity=0.248 Sum_probs=197.8
Q ss_pred CCCCeeeeCcce-eeeccCcEEEEEEeecCCCccEEEEEe-CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 71 RTPTISYISQEQ-IKDIAQTADLKCSVQYADDYPVIWMKM-DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 71 ~~p~~~~~~~~~-~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
.+|.|...+... .+.+|+.++|.|.+.+.|.+.+.|+++ +.... ...++.... ...+|.|
T Consensus 2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~--------------~~~~~~~~~----~~~~L~i 63 (388)
T 2v5m_A 2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG--------------DVPGLRQIS----SDGKLVF 63 (388)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCC--------------CBTTTBEEC----STTEEEE
T ss_pred CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccc--------------cCCCceEEc----CCceEEe
Confidence 356777777664 478999999999999888889999994 43311 001111111 1226999
Q ss_pred eecCCCC------CeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC---CeEEEEe
Q psy16652 149 KEIQETD------AGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA---PTISWRR 219 (384)
Q Consensus 149 ~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~ 219 (384)
.+++.+| +|.|+|.+.+..+...+..+.|.+..+|..... .....+.+|+.+.|.|.+.+.+. +.+.|++
T Consensus 64 ~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~ 142 (388)
T 2v5m_A 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHT 142 (388)
T ss_dssp CCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEE
T ss_pred cccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEe
Confidence 9999987 999999999776554566778888776655433 44567899999999999977543 6899999
Q ss_pred CCCcccccC-----c-eeEeccEEEEcCCCCCCC-eEEEEEEEeCCCCceee---EEEEEEEec-----CeEE-ecCCCc
Q psy16652 220 DNSAALSTG-----G-SIYRGNILKIPNITKTDR-GTYYCVAQNGVGRGMKR---NIAVEVEFA-----PVIT-INRPRQ 283 (384)
Q Consensus 220 ~~~~~~~~~-----~-~~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~-~~~~~~ 283 (384)
++..+.... . ....+..|.|.+++.+|+ |.|+|.+.|..+..... ...+.|..+ |.+. ......
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~ 222 (388)
T 2v5m_A 143 DEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222 (388)
T ss_dssp TTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCE
T ss_pred CCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCce
Confidence 987653221 1 122356899999999999 99999999975443211 124555543 2211 112334
Q ss_pred ccccCCcEEEEEEEeccCCCeEEEEECCEEec------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIM------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
.+.+|+.+.|.|.+.|+|.+.+.|++++..+. ...+.. .....|.|.+++.+|+|.|+|.|.|..
T Consensus 223 ~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 293 (388)
T 2v5m_A 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVK---------QVSGTLIIKDAVVEDSGKYLCVVNNSV 293 (388)
T ss_dssp EEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEE---------EETTEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCcee---------cccCEEEECcCCHHHCeEEEEEEecCC
Confidence 57789999999999999999999999754322 112211 135689999999999999999999999
Q ss_pred cceEEEEEEEEeeeec
Q psy16652 358 GSAQKEIELFDRETQT 373 (384)
Q Consensus 358 g~~~~~~~l~v~~~~~ 373 (384)
|.....+.|.|..+|.
T Consensus 294 g~~~~~~~l~V~~~p~ 309 (388)
T 2v5m_A 294 GGESVETVLTVTAPLS 309 (388)
T ss_dssp CEEEEEEEEEEEEEEE
T ss_pred CceeEEEEEEEeCCCc
Confidence 9999999999988754
No 58
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=4.7e-32 Score=243.64 Aligned_cols=290 Identities=13% Similarity=0.206 Sum_probs=189.3
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
.+...+..+.+.+|++++|.|.+.+.+. ..+.|++++.......+.............|+.+.. ......|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG--SRTDFTLTID 80 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE--ETTEEEEEES
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc--cCCcEEEEeC
Confidence 4556677888999999999999877664 489999985322111111111111111245776655 4556789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCcc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAA 224 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~ 224 (384)
+++.+|+|.|+|.+.+..+......+.|.|.. +|.+....+. ....+|+.+.|.|.+.+ .|.+ .+.|++++..+
T Consensus 81 ~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 159 (438)
T 1qgc_4 81 PVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 159 (438)
T ss_dssp SCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence 99999999999999865544445556677653 3333221111 11235889999999977 6777 89999988765
Q ss_pred ccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEE
Q psy16652 225 LST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL 293 (384)
Q Consensus 225 ~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l 293 (384)
... .+.......|.|.++..+|+|.|+|.|.|..+.. .....+.....+.....+....+.+|+.+.|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L 238 (438)
T 1qgc_4 160 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESGGGLVKPGGSLKL 238 (438)
T ss_dssp CTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEECCEEECTTCCEEE
T ss_pred CCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCCceEEecCCcEEE
Confidence 443 1112224579999999999999999999987654 2222222212222233345567889999999
Q ss_pred EEEEeccC--CCeEEEEEC--CEEec-----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 294 ECHVEAYP--PPAIVWIKD--GVQIM-----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 294 ~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
.|.+.|.| .+.+.|+++ +..+. ...++.+... .......|.|.+++.+|+|.|+|.
T Consensus 239 ~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~ 315 (438)
T 1qgc_4 239 SCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRD---NAKNTLYLQMSSLRSADTAMYYCV 315 (438)
T ss_dssp EEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCCEEEEE
T ss_pred EEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEee---cCCCeEEEEECCCChhhCEEEEEE
Confidence 99999988 679999996 44332 1233333211 111245799999999999999999
Q ss_pred EEeCCc-----ceEEEEEEEEee
Q psy16652 353 AANKYG-----SAQKEIELFDRE 370 (384)
Q Consensus 353 a~n~~g-----~~~~~~~l~v~~ 370 (384)
|.|..+ .......|.|..
T Consensus 316 a~n~~~~~~~~~~~~~~~l~V~~ 338 (438)
T 1qgc_4 316 RREDGGDEGFAYWGQGTVVTVSA 338 (438)
T ss_dssp ECCSSSCCCCCSBCCCEEEEECS
T ss_pred EEccCCCccceeeCCCEEEEEec
Confidence 999544 222334566553
No 59
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=100.00 E-value=1.6e-31 Score=229.42 Aligned_cols=271 Identities=12% Similarity=0.108 Sum_probs=180.7
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+. ..+.+|++++|.|.+.+. ...+.|+|++....... .. ......|.|
T Consensus 21 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~------------------~~--~~~~~~L~I 78 (316)
T 3vh8_G 21 GQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIF------------------HG--RIFQESFNM 78 (316)
T ss_dssp ---CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHH------------------HH--CCBSSCEEE
T ss_pred CCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceee------------------cC--CcceEEEEE
Confidence 446788888777 678899999999999776 67899999886521100 00 112336999
Q ss_pred eecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652 149 KEIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN 221 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~ 221 (384)
.+++.+|+|.|+|.+.+... ...+..+.|.|... |.+... +.. .+.+|+.++|.|.+.+ +.+.+.|++++
T Consensus 79 ~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~-~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g 155 (316)
T 3vh8_G 79 SPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH-PGP-LVKSGERVILQCWSDI-MFEHFFLHKEG 155 (316)
T ss_dssp CSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEE-SCS-EEETTCCEEEEEEESS-CCSEEEEEETT
T ss_pred CCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEec-CCC-ccCCCCeEEEEEcCCC-CCcEEEEEECC
Confidence 99999999999999875322 23456677777643 333221 222 3789999999999954 56789999998
Q ss_pred CcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEEe---cCeEEecCCCcccccCC
Q psy16652 222 SAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVEF---APVITINRPRQGQALQY 289 (384)
Q Consensus 222 ~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~---~p~~~~~~~~~~~~~g~ 289 (384)
..+...... ......|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|.. +|.+...+. ..+.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~ 234 (316)
T 3vh8_G 156 ISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGE 234 (316)
T ss_dssp CCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTS
T ss_pred CccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCC
Confidence 766432211 1245689999999999999999999976642 24556677753 456655443 3678899
Q ss_pred cEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-----eEEEE
Q psy16652 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-----AQKEI 364 (384)
Q Consensus 290 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~ 364 (384)
.++|.|.+.. |.+.+.|+++|..+....... ..........|.|.+++ |+|.|+|.|.|..+. .+..+
T Consensus 235 ~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~ 307 (316)
T 3vh8_G 235 SVTLSCSSRS-SYDMYHLSREGGAHERRLPAV----RKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPL 307 (316)
T ss_dssp CCEEEEEESS-CCSEEEEEETTSSCCEEEECE----ECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCE
T ss_pred cEEEEEECCC-CCcEEEEEECCCcCCCceece----eccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcE
Confidence 9999999974 778999999997664221110 01111124679999999 999999999998763 45667
Q ss_pred EEEEeeee
Q psy16652 365 ELFDRETQ 372 (384)
Q Consensus 365 ~l~v~~~~ 372 (384)
.|.|.++|
T Consensus 308 ~l~V~g~p 315 (316)
T 3vh8_G 308 LVSVTGNP 315 (316)
T ss_dssp EC------
T ss_pred EEEEeCCC
Confidence 88887765
No 60
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=100.00 E-value=1.4e-33 Score=254.64 Aligned_cols=319 Identities=12% Similarity=0.138 Sum_probs=189.1
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccc---------h--hHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEE
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVA---------G--PSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLK 93 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~ 93 (384)
.+..+|.|.+++.+|+|.|.|.+..... . .+.. .. .+........+|.+...+....+.+|+.++|.
T Consensus 76 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~ 153 (457)
T 1hzh_H 76 ANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGK-GT-TVIVSSASTKGPSVFPLAPSSKSTSGGTAALG 153 (457)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCC-CE-EEEECSCCCBCCEEEEECCCSCCCTTCCEEEE
T ss_pred CCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECC-cE-EEEecCCCCCCCeEEecCccccccCCCcEEEE
Confidence 3457899999999999999999976431 0 0000 00 00000112235666555555557899999999
Q ss_pred EEeecC-CC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce
Q psy16652 94 CSVQYA-DD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV 171 (384)
Q Consensus 94 C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 171 (384)
|.+.+. |. +.+.|++++..... .........+++|... ..|.|.+++.+| |.|+|.+.+..+. .
T Consensus 154 C~~~g~~P~~~~v~W~k~~~~~~~-----~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~-~ 219 (457)
T 1hzh_H 154 CLVKDYFPEPVTVSWNSGALTSGV-----HTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSN-T 219 (457)
T ss_dssp EEEESBBSCCCEEEETTTTBCTTE-----EEEEEEECTTSCEEEE-------EEEEECSGGGGT-SCCEEEEEEGGGT-E
T ss_pred EEEeEEeCCCeEEEEEeCCEeccc-----eEcCceECCCCCEEEE-------EEEEecccccCC-ceEEEEEEeCCCC-c
Confidence 999875 53 78999987754210 0000001122333322 369999999999 9999999875433 2
Q ss_pred eeeEEEEEec-----------------CCccccCCCceE-EeecCceEEEEEEecccCCC----eEEEEeCCCcccccCc
Q psy16652 172 SAEVELIVRR-----------------PPIISDNSTRSV-IVSEGQTVYLYCYANGFPAP----TISWRRDNSAALSTGG 229 (384)
Q Consensus 172 ~~~~~l~v~~-----------------~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~~----~v~W~~~~~~~~~~~~ 229 (384)
.....+.+.. +|.+....+... .+.+|+.+.|.|.+.+.+++ .+.|++++..+.....
T Consensus 220 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~ 299 (457)
T 1hzh_H 220 KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT 299 (457)
T ss_dssp EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEE
T ss_pred ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccc
Confidence 2222222211 122111111111 14679999999999887543 8999999976543211
Q ss_pred e---eEeccEEEEc---CCCCCC---CeEEEEEEEeCCCCceeeEEEE----EEEecCeEEecCCCcccccCCcEEEEEE
Q psy16652 230 S---IYRGNILKIP---NITKTD---RGTYYCVAQNGVGRGMKRNIAV----EVEFAPVITINRPRQGQALQYDAILECH 296 (384)
Q Consensus 230 ~---~~~~~~l~i~---~~~~~d---~G~Y~C~~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~~~~~g~~~~l~C~ 296 (384)
. ...++.+.+. .+...| +|.|+|.|.|..+.. .....+ .+..+|.+.+.+.......+..+.|.|.
T Consensus 300 ~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~ 378 (457)
T 1hzh_H 300 KPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCL 378 (457)
T ss_dssp EEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS-CEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEE
T ss_pred ccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC-cceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEE
Confidence 1 1112233332 233444 999999999865443 222233 3456787776554433333444999999
Q ss_pred EeccCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 297 VEAYPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 297 ~~~~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.|.+++ .|.|+++|..+.............+.....+.|.|.....+|.|.|+|.|.|.....
T Consensus 379 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 379 VKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN 444 (457)
T ss_dssp EEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCC
Confidence 9996444 899999999885432221111111111223456666666788999999999986543
No 61
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=100.00 E-value=9.9e-35 Score=260.48 Aligned_cols=314 Identities=12% Similarity=0.178 Sum_probs=196.0
Q ss_pred CceEEEEEeeecceEEEEEEEeeeccc--hhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CCc
Q psy16652 26 KPIRFFIHEVTGEKVTSVILLFKMSVA--GPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DDY 102 (384)
Q Consensus 26 ~~~~l~i~~~~~~d~G~y~c~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~ 102 (384)
+..+|.|.+++.+|+|.|.|.+..... ..... +........+|.+...+....+.+|+.++|.|.+.+. |.+
T Consensus 76 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-----l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p 150 (434)
T 1igy_B 76 NTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTT-----VTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP 150 (434)
T ss_dssp CBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEE-----CEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSC
T ss_pred CEEEEEECCCChHHCEEEEEEEEccccccCCceE-----EEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCC
Confidence 456899999999999999999876311 00000 0000112245666544444456899999999999875 554
Q ss_pred -cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652 103 -PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181 (384)
Q Consensus 103 -~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 181 (384)
.+.|++++.... ...... ....+.|... ..|.|.+++.+| |.|+|.+.+..+.. .....+.+..
T Consensus 151 ~~v~W~k~~~~~~-----~~~~~~-~~~~~~~~~~-------s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~ 215 (434)
T 1igy_B 151 VTVTWNSGSLSSG-----VHTFPA-VLQSDLYTLS-------SSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRD 215 (434)
T ss_dssp CEEEETTTTBCSS-----EEECCC-EECSSCEEEE-------EEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCC
T ss_pred eEEEEeeCCcCCC-----eEecCc-eecCCcEEEE-------EEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCC
Confidence 999998775411 000000 0111333332 369999999889 99999998665432 1222222110
Q ss_pred ---------C---CccccCCCceE-EeecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---------eeEecc
Q psy16652 182 ---------P---PIISDNSTRSV-IVSEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG---------SIYRGN 235 (384)
Q Consensus 182 ---------~---~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---------~~~~~~ 235 (384)
. |.+....+... .+.+|+.+.|.|.+.+.+ .+.+.|++++..+..... .....+
T Consensus 216 ~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (434)
T 1igy_B 216 CGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVS 295 (434)
T ss_dssp CCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCC
T ss_pred CCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEE
Confidence 0 12111111111 167899999999998873 358999999876542211 111234
Q ss_pred EEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEEC
Q psy16652 236 ILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKD 310 (384)
Q Consensus 236 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~ 310 (384)
.|.|.++..+|+|.|+|.|.|..+.. ....+.+ .+..+|.+.+.+.......|+.+.|.|.+.|. |++ .|.|+++
T Consensus 296 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~ 375 (434)
T 1igy_B 296 ALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSD 375 (434)
T ss_dssp CEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEET
T ss_pred EEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEEC
Confidence 79999999999999999999987753 1223332 45567777665554444467789999999985 433 8999999
Q ss_pred CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
|..+.............+.....+.|.|.....+|.|.|+|.|.|....
T Consensus 376 g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 376 GQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp TSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 9887432211111111111122345777777788899999999998654
No 62
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.98 E-value=1.3e-30 Score=218.01 Aligned_cols=246 Identities=18% Similarity=0.259 Sum_probs=178.5
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeec-CCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQY-ADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
..+|.+.. +..+.+|++++|.|.+.+ .|.+ .+.|++++..... .+... .. .|
T Consensus 4 ~~~p~~~~---~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~------------------~~~~~--~~--~~ 58 (265)
T 2oz4_A 4 ATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP------------------TVTYG--ND--SF 58 (265)
T ss_dssp SSCCEEEC---CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC------------------EEEEC--SS--EE
T ss_pred CCCCcccc---CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc------------------eEeeC--CC--eE
Confidence 34555543 336899999999999988 5654 9999998754211 11111 11 34
Q ss_pred EEeec---CCCCCee--EEEEEEEccCcceeeeEEEEEecCC--ccccCCCceEEeecCceEEEEEEecccCCCeEEEEe
Q psy16652 147 SIKEI---QETDAGI--YKCEVIISLNNKVSAEVELIVRRPP--IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR 219 (384)
Q Consensus 147 ~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~ 219 (384)
.+..+ +..|+|. |+|.+.+.. +..+..+.|.|...| .+. .....+.+|+.+.|.|.+. |.+.+.|
T Consensus 59 ~~~~~~~~~~~d~g~g~Y~C~a~n~~-~~~~~~~~l~V~~~p~p~~~---~~~~~v~~G~~v~l~C~~~--p~~~i~W-- 130 (265)
T 2oz4_A 59 SAKASVSVTAEDEGTQRLTCAVILGN-QSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL-- 130 (265)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEEETT-EEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEECC--TTSEEEE--
T ss_pred EEEeecccccccCCcceEEEEEecCC-CCcEEEEEEEEeCCCCceee---cCCceecCCCcEEEEEEcc--CCCEEEE--
Confidence 44444 7788884 999998654 345667788887533 332 2344578899999999998 8889999
Q ss_pred CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC-CCce--eeEEEEEEEecCeEEec--CCCcccccCCcEEEE
Q psy16652 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-GRGM--KRNIAVEVEFAPVITIN--RPRQGQALQYDAILE 294 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~ 294 (384)
++..+.... ....|.|..+..+|+|.|+|.+.|.. |... +..+.|.|.++|.+... +....+.+|+.+.|.
T Consensus 131 ~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~ 206 (265)
T 2oz4_A 131 NGVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206 (265)
T ss_dssp SSCSSSCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCC
T ss_pred CCEEccCCC----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEE
Confidence 666553221 23458889999999999999998644 5532 36788889888887554 334567889999999
Q ss_pred EEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 295 C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
|.+.|.|.|.+.|+++|..+.. ...+ ..++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 207 C~~~g~P~p~i~W~~~~~~~~~----------------~g~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 207 CQAWGNPLPELKCLKDGTFPLP----------------IGES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp CCCEEESCCEEEEEETTTEECC----------------TTSC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eECccCCCCeEEEEECCcccCC----------------CCcE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 9999999999999999872211 1222 23778999999999999999999999999874
No 63
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.98 E-value=1.2e-30 Score=234.61 Aligned_cols=281 Identities=17% Similarity=0.257 Sum_probs=187.2
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++++|.|.+.+.+ ...+.|++.........+.... .+. .....+|+.+..+...+..+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 35566789999999999998753 5689999975432111111111 010 0113468887765456678999999
Q ss_pred cCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCC
Q psy16652 151 IQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNS 222 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~ 222 (384)
++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~ 164 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 164 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCC
Confidence 9999999999999865433 233446777763 2322211111 124689999999999874 766 999999886
Q ss_pred ccccc-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE------------------EecCeEE
Q psy16652 223 AALST-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV------------------EFAPVIT 277 (384)
Q Consensus 223 ~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~ 277 (384)
.+... .+.......|.|.++..+| |.|+|.|.|..+.. .....+.+ ..+|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~ 242 (444)
T 1igt_B 165 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVF 242 (444)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEE
T ss_pred CCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEE
Confidence 53110 1222234579999999889 99999999987764 22333322 1256553
Q ss_pred ecCCCcc--cccCCcEEEEEEEeccC----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 278 INRPRQG--QALQYDAILECHVEAYP----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 278 ~~~~~~~--~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
+.++... +.+|+.+.|.|.+.|.| .+.+.|+++|..+.............+.....+.|.|..++.+|.|.|+|
T Consensus 243 ~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C 322 (444)
T 1igt_B 243 IFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKC 322 (444)
T ss_dssp EECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEE
T ss_pred ecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEE
Confidence 4344333 47899999999999974 35999999998886543222121111112235679999999999999999
Q ss_pred EEEeCCcceE
Q psy16652 352 KAANKYGSAQ 361 (384)
Q Consensus 352 ~a~n~~g~~~ 361 (384)
.|.|..|...
T Consensus 323 ~a~n~~~~~~ 332 (444)
T 1igt_B 323 KVNNKDLPAP 332 (444)
T ss_dssp EEECTTCSSC
T ss_pred EEEcCCCCCc
Confidence 9999998773
No 64
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.97 E-value=2e-30 Score=225.22 Aligned_cols=281 Identities=16% Similarity=0.258 Sum_probs=179.9
Q ss_pred eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSLI----IHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++++|.|.+.+. +.+.+.|+|++.......+.... .+... ...+|+.+..+......+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 3556678999999999999875 36789999985321111111110 00000 12467877765456678999999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAA 224 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~ 224 (384)
++.+|+|.|+|.+.+. .........|.|.. +|.+.... ....+.+|+.+.|.|.+.|. |. +.+.|++++..+
T Consensus 86 v~~~D~G~Y~C~~~n~-~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~ 163 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLN-MAYWGQGTLVTVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTS 163 (344)
T ss_dssp CCGGGCEEEEEEETTT-TCEECCCEEEEECSSCCBCCEEEEEC-CSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCT
T ss_pred CCcccCEEEEEEEecC-cceecCcEEEEEecCCCCCCeEEEcc-ccccccCCCcEEEEEEEeeEECCCeEEEEecCCccC
Confidence 9999999999999752 22344556777763 23222111 11225689999999999885 54 699999988653
Q ss_pred cc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE----------------------EEEec
Q psy16652 225 LS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV----------------------EVEFA 273 (384)
Q Consensus 225 ~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l----------------------~v~~~ 273 (384)
.. ..+.......|.|.++..+| |.|+|.|.|..+... ...+.+ .+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~ 242 (344)
T 1za6_B 164 GVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPRE 242 (344)
T ss_dssp TEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBC
T ss_pred ceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcC
Confidence 21 11222233479999998878 999999999776531 122211 12356
Q ss_pred CeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
|.+.+.++......|+.++|.|.+.|. | .+.+.|+++|..+.............+.....+.|.|.....+|.|.|+|
T Consensus 243 P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC 322 (344)
T 1za6_B 243 PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSC 322 (344)
T ss_dssp CEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEE
T ss_pred CEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEE
Confidence 776665544434457779999999995 4 35899999998875432222211111111223456666666778999999
Q ss_pred EEEeCCcceE
Q psy16652 352 KAANKYGSAQ 361 (384)
Q Consensus 352 ~a~n~~g~~~ 361 (384)
.|.|......
T Consensus 323 ~a~~~~l~~~ 332 (344)
T 1za6_B 323 SVMHEALHNH 332 (344)
T ss_dssp EEECTTSTTS
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 65
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.97 E-value=5.7e-29 Score=225.53 Aligned_cols=288 Identities=14% Similarity=0.216 Sum_probs=184.6
Q ss_pred eeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEE
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+....+.+|++++|.|.+.+.+ ...+.|++.........+.... .+. .....+|+.+..+......+|.|
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (475)
T 1iga_A 5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL 84 (475)
T ss_pred eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence 3446677889999999999997653 5689999975332111111111 100 11234678777654556789999
Q ss_pred eecCCCCCeeEEEEEEEccCc-----ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-C-eEE
Q psy16652 149 KEIQETDAGIYKCEVIISLNN-----KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-P-TIS 216 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~v~ 216 (384)
.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+ ..+.+|+.+.|.|.+.|. |. + .+.
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~g~~v~L~C~~~g~~P~~p~~v~ 162 (475)
T 1iga_A 85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL--CSTQPDGNVVIACLVQGFFPQEPLSVT 162 (475)
T ss_pred CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc--cccCCCCeEEEEEEEeeecCCCceEEE
Confidence 999999999999999865432 223445677653 233322211 123689999999999885 65 4 999
Q ss_pred EEeCCCcccc---------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE----------------
Q psy16652 217 WRRDNSAALS---------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE---------------- 271 (384)
Q Consensus 217 W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------- 271 (384)
|++++..... ..+.....+.|.|..+..+|+|.|+|.|.|..+......+.+.|.
T Consensus 163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~ 242 (475)
T 1iga_A 163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSP 242 (475)
T ss_pred EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCC
Confidence 9988743211 111122234688888988999999999999876433344443331
Q ss_pred --ecCeEEecCC-CcccccCCcEEEEEEEeccCC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 272 --FAPVITINRP-RQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 272 --~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
.+|.+.+.++ ...+.+|+.+.|.|.+.|.++ +.+.| ++..+.............+.....+.|.|..++.+|
T Consensus 243 ~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d 320 (475)
T 1iga_A 243 SCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNH 320 (475)
T ss_pred CCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhcc
Confidence 2444433333 333588999999999998754 58999 444443221111111111111235679999999999
Q ss_pred CeEEEEEEEeCCcceEEEEEEE
Q psy16652 346 FGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.|.|+|.|.|..|.......|.
T Consensus 321 ~G~Y~C~a~n~~~~~~~~~~v~ 342 (475)
T 1iga_A 321 GKTFTCTAAYPESKTPLTATLS 342 (475)
T ss_pred CCcEEEEEEcCCCCCceEEEee
Confidence 9999999999999865555553
No 66
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=224.96 Aligned_cols=330 Identities=13% Similarity=0.123 Sum_probs=194.0
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccc---------hhHHHHH-HHHHhhhhcccCCCCeeeeCc-ceeeeccCcEEEE
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVA---------GPSIIVA-LSFLISLASSQRTPTISYISQ-EQIKDIAQTADLK 93 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~p~~~~~~~-~~~v~~g~~v~l~ 93 (384)
.+..+|.|.+++.+|+|.|+|.+..... .....+. -..+........+|.+..... ......|+.++|.
T Consensus 77 ~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~ 156 (512)
T 1zvo_C 77 RNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA 156 (512)
T ss_pred CCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEE
Confidence 3468999999999999999999876421 0000000 000000111223555542221 1112356899999
Q ss_pred EEeecC-CC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcce
Q psy16652 94 CSVQYA-DD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV 171 (384)
Q Consensus 94 C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 171 (384)
|.+.+. |. ..+.|++++... . ..........++.|... ..|.|.....+ .|.|+|.+.+..+...
T Consensus 157 C~~~g~~P~p~~v~W~~~~~~~---~--~~~~~~~~~~~g~~~~~-------s~L~i~~~~~~-~g~ytC~v~n~~~~~~ 223 (512)
T 1zvo_C 157 CLITGYHPTSVTVTWYMGTQSQ---P--QRTFPEIQRRDSYYMTS-------SQLSTPLQQWR-QGEYKCVVQHTASKSK 223 (512)
T ss_pred EEEEeeecCceEEEEEcCcccC---c--eEecCceecCCCCEEEE-------EEEEEcHHHcC-CceEEEEEEeCCCCce
Confidence 999886 54 489999954321 0 00011111122344333 26889888777 8999999997654422
Q ss_pred eee----------EEEEEecCC----------------------------------------------------ccccCC
Q psy16652 172 SAE----------VELIVRRPP----------------------------------------------------IISDNS 189 (384)
Q Consensus 172 ~~~----------~~l~v~~~~----------------------------------------------------~~~~~~ 189 (384)
... ..+.+..+| .+....
T Consensus 224 ~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~ 303 (512)
T 1zvo_C 224 KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT 303 (512)
T ss_pred EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC
Confidence 111 123332222 111111
Q ss_pred CceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc----------CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST----------GGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+....+.+|+.+.|.|.+.+..+ ..++|++++..+... ++.....+.|.|.....+|+|.|+|.|.|.
T Consensus 304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~ 383 (512)
T 1zvo_C 304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP 383 (512)
T ss_pred CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence 22223457999999999988533 389999998764411 111122346999999999999999999997
Q ss_pred CCCceeeEEEEEE----EecCeEEecCCCcccccCCcEE-EEEEEeccCCC--eEEEEECCEEecCCCcee--eeeeecc
Q psy16652 258 VGRGMKRNIAVEV----EFAPVITINRPRQGQALQYDAI-LECHVEAYPPP--AIVWIKDGVQIMNNQHYS--VSHFATS 328 (384)
Q Consensus 258 ~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~--~~~~~~~ 328 (384)
.+....+.+.... ..+|.+.+.++.. .|+.+. |.|.+.|.+++ .+.|+++|..+....... ......+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg 460 (512)
T 1zvo_C 384 SLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGS 460 (512)
T ss_pred CCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCC
Confidence 6653222222211 2457665544333 788899 99999985443 689999999986543211 1111111
Q ss_pred C-ccccceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEee
Q psy16652 329 D-EFSDTSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDRE 370 (384)
Q Consensus 329 ~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~ 370 (384)
. ....+.|.|.....+|.|.|+|.|.|...... ..++|.|..
T Consensus 461 ~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~ 505 (512)
T 1zvo_C 461 TTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY 505 (512)
T ss_pred CEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence 1 12234577777777789999999999876543 444454443
No 67
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.97 E-value=5e-29 Score=210.67 Aligned_cols=244 Identities=19% Similarity=0.243 Sum_probs=178.0
Q ss_pred CCCCCcchhccccCCCCCCC--CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeC
Q psy16652 2 IAPSPFDFVNRFQNTSTPWD--PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYIS 79 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 79 (384)
|.+.+.|++|+..+...... ....+..+|.|.+++.+|+|.|.|.+.+........ .. .....+|.+....
T Consensus 33 p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~------~~-l~V~~~p~~~~~~ 105 (284)
T 2rik_A 33 APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS------AQ-LGVQEPPRFIKKL 105 (284)
T ss_dssp SCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE------EE-EEEECCCEEEECC
T ss_pred CCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceEEEE------EE-EEccCCCcccccC
Confidence 56789999998665533210 012356899999999999999999998753221110 00 0122345544433
Q ss_pred -cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 80 -QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 80 -~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
....+.+|+.+.|.|.+.+.|.+.+.|++++... ....++.+.. ......|.|.+++.+|+|.
T Consensus 106 ~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~ 169 (284)
T 2rik_A 106 EPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEI--------------QESSKFRMSF--VESVAVLEMYNLSVEDSGD 169 (284)
T ss_dssp CSEEEEETTCCEEEEEEEESSSCCEEEEEETTEEC--------------CCSSSEEEEE--ETTEEEEEECSCCGGGCEE
T ss_pred CCceEecCCceEEEEEEEeeeCCCEEEEEECCEEC--------------cCCCcEEEEE--cCCEEEEEECCCCcccCEE
Confidence 3445889999999999998888899999977542 1223333333 2345689999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe----c
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----G 234 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~ 234 (384)
|+|.+.+.. +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... .
T Consensus 170 Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 247 (284)
T 2rik_A 170 YTCEAHNAA-GSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247 (284)
T ss_dssp EEEEEECSS-CEEEEEEEEEEECCCBCCSC-CCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTE
T ss_pred EEEEEEcCC-CceeEEEEEEEecCCcceeC-CCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCE
Confidence 999998554 45677888999888876643 45567889999999999999999999999999877655443322 1
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 248 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 283 (284)
T 2rik_A 248 TSIHILNVDSADIGEYQCKASNDVGSY-TCVGSITLK 283 (284)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred EEEEEcCCCcccCEEEEEEEEeCCCce-eEEEEEEEc
Confidence 479999999999999999999998875 566677664
No 68
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.97 E-value=5.5e-29 Score=212.64 Aligned_cols=258 Identities=20% Similarity=0.261 Sum_probs=185.0
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... ..+.++.+... ..+...|.|.+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~~ 68 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-------------ADGLKYRIQEF-KGGYHQLIIAS 68 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECC-------------CCSSSEEEEEE-TTTEEEEEESS
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcc-------------cCCCeEEEEEC-CCCEEEEEEcc
Confidence 57888888999999999999999999888888999999775421 11234444322 34556899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC----CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN----STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~----~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~ 226 (384)
++.+|+|.|+|.+.+.. +..+..+.|.|..++.+... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (305)
T 2nzi_A 69 VTDDDATVYQVRATNQG-GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (305)
T ss_dssp CCGGGCSEEEEEEEETT-EEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCS
T ss_pred CChhhCeEEEEEEEcCC-CCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCC
Confidence 99999999999998654 44677778888765543321 12456788999999999999999999999999887765
Q ss_pred cCceeE----eccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE----
Q psy16652 227 TGGSIY----RGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV---- 297 (384)
Q Consensus 227 ~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---- 297 (384)
...... ....|.|.+ +..+|+|.|+|.+.|..|.. ...+.|.|...|..... .......+..+.|.|..
T Consensus 148 ~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~p~~-~~~~~~~~~~v~l~w~~p~~~ 225 (305)
T 2nzi_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADVPDPPRG-VKVSDVSRDSVNLTWTEPASD 225 (305)
T ss_dssp SSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EEEEEEEEEBCCCCCEE-EEEESCCSSCEEEEEECCSCC
T ss_pred CCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-eeEEEEEEecCCCCCCC-ceeeeccCCEEEEEEcCCccC
Confidence 443322 235799999 99999999999999998875 66788888766531110 00111233455555553
Q ss_pred ----------eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 298 ----------EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 298 ----------~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
...+.+...|.+.+.. ....+.|.++...+.|.|+|.|.|..|....+
T Consensus 226 g~~~i~~y~v~~~~~~~~~w~~~~~~------------------~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S 283 (305)
T 2nzi_A 226 GGSKITNYIVEKCATTAERWLRVGQA------------------RETRYTVINLFGKTSYQFRVIAENKFGLSKPS 283 (305)
T ss_dssp SBSCEEEEEEEEEETTSCCEEEEEEE------------------SSSEEEECSCCSSCEEEEEEEEEETTEECCCC
T ss_pred CCCceeEEEEEEecCCCCccEECccc------------------cCceEEecCCCCCCeEEEEEEEEeCCcccCCc
Confidence 3333333333332211 25678999999999999999999999977644
No 69
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.97 E-value=2e-29 Score=227.54 Aligned_cols=280 Identities=18% Similarity=0.312 Sum_probs=178.0
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++++|.|.+.+.+ ...+.|++.........+.... .+.. ....+|+.+..+.......|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 35567789999999999998765 6789999975432112111111 1110 112468887765456678999999
Q ss_pred cCCCCCeeEEEEEEEccC---------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-C
Q psy16652 151 IQETDAGIYKCEVIISLN---------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-P 213 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~ 213 (384)
++.+|+|.|+|.+.+..+ . .......|.|.. +|.+.... ....+.+|+.+.|.|.+.+. |. +
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~~~ 164 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLA-PSSKSTSGGTAALGCLVKDYFPEPV 164 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEEC-CCSCCCTTCCEEEEEEEESBBSCCC
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecC-ccccccCCCcEEEEEEEeEEeCCCe
Confidence 999999999999986543 0 233456677764 33332211 11235789999999999875 64 7
Q ss_pred eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE--------------
Q psy16652 214 TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE-------------- 271 (384)
Q Consensus 214 ~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-------------- 271 (384)
.+.|++++..+... .+.......|.|.++..+| |.|+|.+.|..+.. .....+.+.
T Consensus 165 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 165 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp EEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCC
T ss_pred EEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCc
Confidence 99999988643211 1112223479999999989 99999999976543 223333322
Q ss_pred ---ecCeEEecCCC-cc-cccCCcEEEEEEEeccCCC----eEEEEECCEEecCCCceeeeeeeccCccccceEEEee--
Q psy16652 272 ---FAPVITINRPR-QG-QALQYDAILECHVEAYPPP----AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT-- 340 (384)
Q Consensus 272 ---~~p~~~~~~~~-~~-~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-- 340 (384)
.+|.+.+.++. .. +.+|+.+.|.|.+.|.|++ .+.|++++..+.......... ..++.+.+..
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~------~~~g~~~~~~~l 316 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREE------QYNSTYRVVSVL 316 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEE------CTTSCEEEEEEE
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccccee------cCCCcEEEEEEE
Confidence 24554333333 22 5679999999999997653 999999998886432211111 0122333332
Q ss_pred -cCCCC---CeEEEEEEEeCCcceEEEEEE
Q psy16652 341 -IERRQ---FGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 341 -~~~~d---~G~Y~C~a~n~~g~~~~~~~l 366 (384)
+...| .|.|+|.|.|..+.......+
T Consensus 317 ~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 317 TVLHQDWLNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred EECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence 23444 999999999987665444333
No 70
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.96 E-value=1.5e-29 Score=217.71 Aligned_cols=277 Identities=14% Similarity=0.202 Sum_probs=172.0
Q ss_pred cCCCCeeeeCcceeeecc--CcEEEEEEeecC-C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652 70 QRTPTISYISQEQIKDIA--QTADLKCSVQYA-D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (384)
..+|.+.+.+.......| +++.|.|.+.+. | .+.+.|++++......... ......++.+... ..
T Consensus 5 ~~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~----~~~~~~~g~~~~~-------s~ 73 (323)
T 2wqr_A 5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLST----ASTTQEGELASTQ-------SE 73 (323)
T ss_dssp CCCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEE----EEEEEETTEEEEE-------EE
T ss_pred CCCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceec----CCcCccCCcEEEE-------EE
Confidence 345666665544443344 699999999875 3 5789999987543211000 0001113333332 26
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEeccc-CCC---eEEEE
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP---TISWR 218 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~v~W~ 218 (384)
|.|.+...+|+|.|+|.+.+..+ .....+.+.+. ..|.+....+....+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus 74 l~i~~~~~~d~g~Y~C~a~n~~~-~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~ 152 (323)
T 2wqr_A 74 LTLSQKHWLSDRTYTCQVTYQGH-TFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWS 152 (323)
T ss_dssp EEEEHHHHHTTCCEEEEEEETTE-EEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEE
T ss_pred EEEcHHHcCCCCcEEEEEEeCCC-CcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEE
Confidence 88988888899999999986542 22222211000 112222222333346789999999999875 455 89999
Q ss_pred eCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE----EEecCeEEecCCCccc
Q psy16652 219 RDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE----VEFAPVITINRPRQGQ 285 (384)
Q Consensus 219 ~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~ 285 (384)
+++...... .+.......|.|.+++.+|+|.|+|.+.|..... .....+. +..+|.+.+.+.....
T Consensus 153 k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~~ 231 (323)
T 2wqr_A 153 RASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR-ALMRSTTKTSGPRAAPEVYAFATPEWP 231 (323)
T ss_dssp ETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS-CEEEEECCCCSCCBCCEEEEEECCCCT
T ss_pred ECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC-CeeeEEEccCCCCCCCEEEEeCCChHH
Confidence 975333221 1111234579999999999999999999976432 2223332 2356776654333223
Q ss_pred ccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 286 ALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 286 ~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
..|+.++|.|.+.| .|++ .|.|+++|..+......... ....+.....+.|.|..+..+|.|.|+|.|.|..+.
T Consensus 232 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 232 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred hcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 34999999999998 4544 89999999988643211110 011111223467999999999999999999999887
No 71
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.96 E-value=3.7e-27 Score=208.36 Aligned_cols=274 Identities=17% Similarity=0.217 Sum_probs=190.7
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+|.|.. +.+..+.+|++++|.|.+.+.|.+.+.|+++ +... .. .....+.++.+.. ......|.|.
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~-------~~--~~~~~~~~~~~~~--~~~~~~L~i~ 68 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTF-------TE--GDKSLDGRIEVKG--QHGSSSLHIK 68 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEE-------CC----CCSSSSEEEEE--CSSEEEEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCcee-------cc--CcCCCCCeEEEec--cCCcceEEEc
Confidence 356665 5667788899999999999988889999997 3221 10 0111245666655 3557789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC-
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG- 228 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~- 228 (384)
+++.+|+|.|+|.+.|.. +..+..+.|.|..+|.+.. ......+.+|+.+.|.|.+.+.|.+.+.|++++..+....
T Consensus 69 ~v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~ 146 (389)
T 2jll_A 69 DVKLSDSGRYDCEAASRI-GGHQKSMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNT 146 (389)
T ss_dssp SCCGGGCEEEEEEEECSS-CEEEEEEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTC
T ss_pred ccChhhCEEEEEEEEeCC-CCcceEEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccC
Confidence 999999999999998654 4467788899988877653 2344568899999999999999999999999987765443
Q ss_pred -ceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec----
Q psy16652 229 -GSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA---- 299 (384)
Q Consensus 229 -~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~---- 299 (384)
.... ....|.|.++..+|+|.|+|.|.|..|.. ...+.+.+...|..... .......+..+.|.|....
T Consensus 147 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g 224 (389)
T 2jll_A 147 TNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGG 224 (389)
T ss_dssp TTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTT
T ss_pred ceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCC
Confidence 1111 13479999999999999999999998875 55566666554421100 0011223467888887522
Q ss_pred cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 300 YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 300 ~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.|.. .+.|..++... +.... .......+.|.++...+.|.|.|.|.|..|....+..+.+..
T Consensus 225 ~pi~~y~v~~~~~~~~~-----~~~~~----~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t 288 (389)
T 2jll_A 225 VPIHHYQVDVKEVASEI-----WKIVR----SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQT 288 (389)
T ss_dssp SCEEEEEEEEEETTCSC-----CEEEE----CSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEEC
T ss_pred cceEEEEEEEEECCCcc-----cEEee----ccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEe
Confidence 2222 46787766421 11110 111346799999999999999999999999765544444443
No 72
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=216.02 Aligned_cols=255 Identities=20% Similarity=0.242 Sum_probs=163.0
Q ss_pred CCCCCcchhccccCCCCCCCC---CCCCceEEEEEeeec-ceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeee
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDP---STQKPIRFFIHEVTG-EKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISY 77 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~-~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 77 (384)
|.+.+.|++|+..+....... ......+|.|.+++. +|+|.|.|.+.+..+.......+........+...|.+..
T Consensus 34 p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~ 113 (304)
T 2yd9_A 34 PKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM 113 (304)
T ss_dssp SCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEE
T ss_pred CCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeec
Confidence 667899999987654332111 122347899999998 9999999998875332111000000000011122367777
Q ss_pred eCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG 157 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 157 (384)
.+....+.+|+++.|.|.+.+.+.+.+.|++++...... ....++.... ...|.|.+++.+|+|
T Consensus 114 ~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----------~~~~~~~~~~-----~~~L~i~~~~~~d~G 177 (304)
T 2yd9_A 114 GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS-----------ASNGRIKQLR-----SGALQIESSEETDQG 177 (304)
T ss_dssp CCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG-----------GGTTSEEECT-----TSCEEECSCCGGGCE
T ss_pred CCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC-----------CCcceEEeCC-----CeEEEEccCCcccCE
Confidence 777788999999999999998888899999977542110 0011222111 126999999999999
Q ss_pred eEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652 158 IYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234 (384)
Q Consensus 158 ~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 234 (384)
.|+|.+.+..+...+....+.|. .+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+..........
T Consensus 178 ~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~ 256 (304)
T 2yd9_A 178 KYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-PMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR 256 (304)
T ss_dssp EEEEEEEETTEEEECCCEEEEEECCCEEEEEEEC-CCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSE
T ss_pred EEEEEEEeCCCCEEeccEEEEEEeeccCCcEEec-CCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCc
Confidence 99999997665444333455553 33433322 334567899999999999999999999999988776554433333
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
..|.+.++ +|+|.|+|.|.|..|.. +..+.|.|..++.+
T Consensus 257 ~~L~i~~~--~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~~~ 295 (304)
T 2yd9_A 257 NVLELTDV--KDSANYTCVAMSSLGVI-EAVAQITVKSLPKA 295 (304)
T ss_dssp EEEEECSC--CSCEEEEEEEEETTEEE-EEEEEEC-------
T ss_pred EEEEEccc--ccCEEEEEEEEeCCCcE-EEEEEEEEecCccc
Confidence 45777665 68999999999998876 67788888877654
No 73
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.96 E-value=3e-29 Score=215.51 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=166.6
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
|.+.+.|++|+..+....-.....+..+|.|.+++.+|+|.|.|.+.+..........+... ..|.+...+..
T Consensus 35 p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~-------~~~~~~~~~~~ 107 (317)
T 2y25_A 35 KETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-------AFKELMMEVCK 107 (317)
T ss_dssp TTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTH-------HHHHHHHHHHH
T ss_pred CCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEe-------cCccccccCCc
Confidence 56789999998666543322333556899999999999999999987642211110000000 00111111223
Q ss_pred eeeeccCcEEEEEEeec----------CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 82 QIKDIAQTADLKCSVQY----------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
..+.+|+.+.|.|...+ .+.+.+.|++++... ....++.+.. ......|.|.++
T Consensus 108 ~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~~~ 171 (317)
T 2y25_A 108 KIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI--------------RYSDRVKTGV--TGEQIWLQINEP 171 (317)
T ss_dssp HHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBC--------------CCCSSEEEEE--CSSEEEEEEESC
T ss_pred eecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEEC--------------CCCCCeEEec--cCCEEEEEECcC
Confidence 33567777777777665 578899999987653 2234455444 445668999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEecccC
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFP 211 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 211 (384)
+.+|+|.|+|.+.+.. +.....+.|.+.. +|.+....+....+.+|+.+.|.|.+.+.|
T Consensus 172 ~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p 250 (317)
T 2y25_A 172 TPNDKGKYVMELFDGK-TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP 250 (317)
T ss_dssp CGGGCEEEEEEEECSS-CEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSS
T ss_pred CcccCeeEEEEEEeCC-ceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCC
Confidence 9999999999998643 4444555554421 122222234556789999999999999999
Q ss_pred CCeEEEEeCCCcccccCceeEec-----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 212 APTISWRRDNSAALSTGGSIYRG-----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 212 ~~~v~W~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
.+.+.|++++..+.......... ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 251 ~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~ 315 (317)
T 2y25_A 251 PPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFI 315 (317)
T ss_dssp CCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred CCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEEc
Confidence 99999999998876655443332 289999999999999999999998875 6777777764
No 74
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=2.3e-30 Score=232.12 Aligned_cols=278 Identities=14% Similarity=0.230 Sum_probs=181.0
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-C----ceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-G----SLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++++|.|.+.+.+ ...+.|++++.......+..... + ......+|+.+..+...+..+|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 4556789999999999998753 56899999763211111111100 0 011134577766543345668999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL 225 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~ 225 (384)
+.+|+|.|+|.+.+. .........|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++....
T Consensus 86 ~~~D~G~Y~C~~~~~-~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 86 TSDDSAVYYCVREGE-VPYWGQGTTVTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp CGGGCSEECCCCSSS-SCCCCCCEECEECCSCCBCCCEEEECC-CCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred ChHHCEEEEEEEEcc-ccccCCceEEEEccCCCCCCeEEEcCC-ccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 999999999999753 22334456677753 233221111 1224789999999999875 666 999999886431
Q ss_pred c-------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe----------c--CeEEecCCCcc--
Q psy16652 226 S-------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----------A--PVITINRPRQG-- 284 (384)
Q Consensus 226 ~-------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------~--p~~~~~~~~~~-- 284 (384)
. ..+.......|.|.+++.+| |.|+|.|.|..+.. .....+.+.. . |.+.+.++...
T Consensus 164 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~ 241 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDT 241 (434)
T ss_dssp EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHH
T ss_pred eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHh
Confidence 1 01222234579999999888 99999999987764 2223332210 0 44433343323
Q ss_pred cccCCcEEEEEEEeccC----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 285 QALQYDAILECHVEAYP----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 285 ~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.+|+.+.|.|.+.|.+ .+.|.|++++..+.............+.....+.|.|..++.+|.|.|+|.|.|..|..
T Consensus 242 v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 321 (434)
T 1igy_B 242 LLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA 321 (434)
T ss_dssp HSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred cccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence 78899999999999874 34899999998775432221111111222235679999999999999999999999865
No 75
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=207.51 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=168.3
Q ss_pred CCCCCcchhccccCCCCCCCCC--CCCceEEEEEeeecceEEEEEEEeeeccchh--H-H-HHHHHHHhhhhcccCCCCe
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPS--TQKPIRFFIHEVTGEKVTSVILLFKMSVAGP--S-I-IVALSFLISLASSQRTPTI 75 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~--~-~-~~~~~~~~~~~~~~~~p~~ 75 (384)
|.+.+.|++|+.++....--.. .....+|.|.+++.+|+|.|.|.+.+..+.. . . ...+..+........+|.+
T Consensus 30 p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~ 109 (312)
T 2y23_A 30 PKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109 (312)
T ss_dssp TTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEEEECHHHHHHHHHHHHHHHSCBC
T ss_pred CCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEEEEEEeeeeeeecccccCCCCcc
Confidence 6789999999876653221111 2244799999999999999999988642211 1 1 1011111111111224444
Q ss_pred eeeCc-ceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 76 SYISQ-EQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 76 ~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++.. +....++.+..+...+...|.|.+++.
T Consensus 110 ~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~--------------i~~~~~~~~~~~~~~~~~~L~i~~~~~ 175 (312)
T 2y23_A 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIEMFMEKLQD 175 (312)
T ss_dssp CEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEE--------------ECSSSSCEEEEETTTTEEEEEESCCCG
T ss_pred ccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEE--------------CeeCCcEEEEEccCCCEEEEEEccCCc
Confidence 44443 67799999999999998 778889999997754 223356666654446667899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEe---------------------cCCccccCCCceEEeecCceEEEEEEecccCC
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVR---------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA 212 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 212 (384)
+|+|.|+|.+.+. .......+.+. .+|.+.. +....+.+|+.+.|.|.+.+.|.
T Consensus 176 ~d~G~Y~C~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~v~~G~~~~l~C~~~~~p~ 250 (312)
T 2y23_A 176 EDEGTYTFQLQDG---KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE--YLSWEVTGECNVLLKCKVANIKK 250 (312)
T ss_dssp GGCEEEEEEEESS---SCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE--EEEEEEETTTEEEEEEEEESCCS
T ss_pred ccCEeEEEEEEeC---CceEEEEEEEcchhhhhhcccccccccchhhccCCceee--cceEEEeCCCEEEEEEEEcCCCC
Confidence 9999999999632 23333334331 1121111 11357889999999999999888
Q ss_pred C-eEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 213 P-TISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 213 ~-~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+ .+.|++++..+........ ....|.|.+++.+|+|.|+|.|.|..|.. ...+.|.+
T Consensus 251 ~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~i 310 (312)
T 2y23_A 251 ETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVD 310 (312)
T ss_dssp SCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCE-EEEEEECS
T ss_pred CCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCce-eeeeEEEe
Confidence 8 9999999987764333222 22589999999999999999999999876 55566554
No 76
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.96 E-value=1.4e-28 Score=212.92 Aligned_cols=253 Identities=17% Similarity=0.206 Sum_probs=132.2
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhc-------------
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLAS------------- 68 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~------------- 68 (384)
|.+.+.|++|+..+.. ..+....+.+|.|.+++.+|+|.|.|.+.+. ......+.+........
T Consensus 37 p~~~v~W~k~g~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 113 (334)
T 1ry7_B 37 PMGPTVWVKDGTGLVP--SERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDT 113 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceEEEECCeeCCC--cccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccc
Confidence 4578999999866542 2333445789999999999999999998876 22111111111100000
Q ss_pred --ccCCCCeeee----CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652 69 --SQRTPTISYI----SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142 (384)
Q Consensus 69 --~~~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (384)
...+|.+..+ .....+.+|+.+.|.|.+.+.+.+.+.|++++...... .++.. ......
T Consensus 114 ~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~--------------~~~~~-~~~~~~ 178 (334)
T 1ry7_B 114 GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE--------------HRIGG-IKLRHQ 178 (334)
T ss_dssp -----CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTT--------------SSTTC-CCCCTT
T ss_pred cccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccc--------------ccccc-eecccc
Confidence 0023444432 22356889999999999988888899999987653211 11000 001223
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWR 218 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~ 218 (384)
...|.|.+++.+|+|.|+|.+.+.. +.....+.|.|... |.+....+....+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus 179 ~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~ 257 (334)
T 1ry7_B 179 QWSLVMESVVPSDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257 (334)
T ss_dssp TTEEEECSCCGGGCCCEEEEEEETT-EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred eEEEEECCCCcccCEEEEEEEEeCC-CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence 4579999999999999999998655 44566777877653 233223345677899999999999999999999999
Q ss_pred e----CCCcccccCce---eEe----------ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 219 R----DNSAALSTGGS---IYR----------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 219 ~----~~~~~~~~~~~---~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
+ ++..+...... ... ...|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|...|
T Consensus 258 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~ 329 (334)
T 1ry7_B 258 KHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVLPAE 329 (334)
T ss_dssp ECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE-EEEEEEEEECSC
T ss_pred ECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE-EEEEEEEEEECC
Confidence 9 55544332221 001 1379999999999999999999999986 667788887654
No 77
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.96 E-value=5.3e-28 Score=205.10 Aligned_cols=245 Identities=22% Similarity=0.313 Sum_probs=174.6
Q ss_pred CCCCcchh-ccccCCCCCCCCC-----CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652 3 APSPFDFV-NRFQNTSTPWDPS-----TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS 76 (384)
Q Consensus 3 ~~~~~w~~-~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 76 (384)
.+.+.|++ |+..+.... .+. +....+|.|.+++.+|+|.|.|.+.......... ........+|.+.
T Consensus 32 ~~~i~W~~~~g~~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------~~~l~v~~~~~~~ 104 (291)
T 1qz1_A 32 DKDISWFSPNGEKLSPNQ-QRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA------TVNVKIFQKLMFK 104 (291)
T ss_dssp CCEEEEECTTSCBCCSSC-SSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE------EEEEEEECCSEEE
T ss_pred CcEeEEECCCCeECccCC-ceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE------EEEEEeecccccc
Confidence 57899998 554433211 111 2356799999999999999999988754221100 0000123456777
Q ss_pred eeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
..+....+.+|+.+.|.|.+.+.+.+.+.|++++..... ....++.... ...|.|.+++.+|+
T Consensus 105 ~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~-----~~~L~i~~~~~~d~ 167 (291)
T 1qz1_A 105 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVIL------------KKDVRFIVLS-----NNYLQIRGIKKTDE 167 (291)
T ss_dssp ECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSST------------TCCTTEEECT-----TSCEEETTCCGGGC
T ss_pred CCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEccc------------CCCceEEEcc-----CCcEEEccCccccC
Confidence 777788899999999999999888889999998765311 0112332222 12599999999999
Q ss_pred eeEEEEEEEccCc-ceeeeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC----ce
Q psy16652 157 GIYKCEVIISLNN-KVSAEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG----GS 230 (384)
Q Consensus 157 G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~----~~ 230 (384)
|.|+|.+.+...+ .....+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ..
T Consensus 168 G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~ 247 (291)
T 1qz1_A 168 GTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKH 247 (291)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSE
T ss_pred eEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcce
Confidence 9999999876544 34566777777776655332 234567899999999999999999999999988765543 12
Q ss_pred eE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 231 IY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 231 ~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
.. .+..|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 248 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~ 290 (291)
T 1qz1_A 248 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFA 290 (291)
T ss_dssp EECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred EEcCCCcEEEEEecChhcCEEEEEEEEeCCCce-EEEEEEEEEc
Confidence 11 24589999999999999999999998875 6777777753
No 78
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.95 E-value=4.5e-26 Score=207.84 Aligned_cols=281 Identities=15% Similarity=0.184 Sum_probs=176.1
Q ss_pred CcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+..+.+.+|++|+|.|.+.+.+. ..+.||+.........+........ ....+|+.+..+.....++|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 55677899999999999976432 6799999753322122221111111 113478888776556678999999
Q ss_pred cCCCCCeeEEEEEEEccC----------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC
Q psy16652 151 IQETDAGIYKCEVIISLN----------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP 213 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~ 213 (384)
++.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+.......|+.+.|.|.+.+. |.+
T Consensus 87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p 166 (512)
T 1zvo_C 87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS 166 (512)
T ss_pred CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence 999999999999975431 0 123445677763 23322111111101246899999999875 655
Q ss_pred -eEEEEeCCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeE----------EEEEEEe--
Q psy16652 214 -TISWRRDNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN----------IAVEVEF-- 272 (384)
Q Consensus 214 -~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~----------~~l~v~~-- 272 (384)
.+.|++++...... .+.....+.|.|.....+ +|.|+|.|.|..+...... ..+.+..
T Consensus 167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp 245 (512)
T 1zvo_C 167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245 (512)
T ss_pred eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence 89999965432100 111122346888888777 8999999999876542211 1233322
Q ss_pred --------------------------------------------------cCeEEecC-CCcccccCCcEEEEEEEeccC
Q psy16652 273 --------------------------------------------------APVITINR-PRQGQALQYDAILECHVEAYP 301 (384)
Q Consensus 273 --------------------------------------------------~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p 301 (384)
+|.+.+.+ ....+..|+.++|.|.+.|.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~ 325 (512)
T 1zvo_C 246 QAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSD 325 (512)
T ss_pred chhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceE
Confidence 23433332 333456799999999998864
Q ss_pred CC--eEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 302 PP--AIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 302 ~~--~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
++ .|.|+++|..+....... ......+.....+.|.|.....+|.|.|+|.|.|..+..
T Consensus 326 P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~ 387 (512)
T 1zvo_C 326 LKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP 387 (512)
T ss_pred CCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence 43 899999998865211100 111111122234679999999999999999999998765
No 79
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.95 E-value=5.8e-28 Score=207.27 Aligned_cols=243 Identities=17% Similarity=0.219 Sum_probs=165.6
Q ss_pred CCCCcchhccccCCC--CCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 3 APSPFDFVNRFQNTS--TPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
.+.|.|++|+.+... ....+....+.+|.|.+++.+|+|.|.|.+.+........ +.......+|.+...+.
T Consensus 35 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~------~~v~v~~~~p~~~~~~~ 108 (315)
T 1itb_B 35 KGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK------ISAKFVENEPNLCYNAQ 108 (315)
T ss_dssp SSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE------CCCEEECCCTTSSSCGG
T ss_pred CceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE------EEEEEeCCCCCcccccc
Confidence 578999999754322 2233444456699999999999999999998753221110 01111223444433222
Q ss_pred ---ceeeeccCcEEEEEEe------ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 81 ---EQIKDIAQTADLKCSV------QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 81 ---~~~v~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
...+.+|+++.|.|.+ .+.|.+.+.|++++..... ...++... ...|.|.++
T Consensus 109 ~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~-------------~~~~~~~~------~~~L~i~~v 169 (315)
T 1itb_B 109 AIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL-------------DNIHFSGV------KDRLIVMNV 169 (315)
T ss_dssp GEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC-------------CSSSEEEE------TTEEEESSC
T ss_pred cccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC-------------ccceEeec------CceEEEEec
Confidence 2458899999999998 6778889999997754211 11122221 127999999
Q ss_pred CCCCCeeEEEEEEE-ccCcce--eeeEEEEEe-----cCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652 152 QETDAGIYKCEVII-SLNNKV--SAEVELIVR-----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~-~~~~~~--~~~~~l~v~-----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~ 223 (384)
+.+|+|.|+|.+.+ ..+... ...+.+.+. .+|.+.........+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus 170 ~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~ 249 (315)
T 1itb_B 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSV 249 (315)
T ss_dssp CGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEE
T ss_pred eehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEE
Confidence 99999999999984 444332 344445443 4455543333345789999999999999999999999999887
Q ss_pred ccccCcee----------------EeccEEEEcCCCCCC-CeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 224 ALSTGGSI----------------YRGNILKIPNITKTD-RGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 224 ~~~~~~~~----------------~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
+....... .....|.|.+++.+| +|.|+|.|.|..|.. ...+.|.|.
T Consensus 250 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~ 313 (315)
T 1itb_B 250 IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIYP 313 (315)
T ss_dssp CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEECC
T ss_pred CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEec
Confidence 66543211 123489999999999 999999999999986 566666654
No 80
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.95 E-value=3.8e-27 Score=201.94 Aligned_cols=229 Identities=15% Similarity=0.129 Sum_probs=162.6
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEee-cCCCcc
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQ-YADDYP 103 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~ 103 (384)
.++.+|.|.+++.+|+|.|.|.+.....+..... ........|.+........+..|+.+.+.|... +.|.+.
T Consensus 76 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~------~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~ 149 (313)
T 4fqp_A 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVD------IWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQ 149 (313)
T ss_dssp CCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEE------EEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCE
T ss_pred ccceEEEECcCChhhCEEEEEEEeeccCcceeee------eeeeeccCCcceecccceEeecCceEEEEEEccCccCCcE
Confidence 4567899999999999999998753211111000 001123456666666677788899999999875 568889
Q ss_pred EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecC
Q psy16652 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRP 182 (384)
Q Consensus 104 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~ 182 (384)
+.|++++....... ......++.+.. ...|.|.+.+.+|+|.|+|.+.+..+. .....+.|.|..+
T Consensus 150 i~W~~~~~~~~~~~------~~~~~~~~~~~~-------~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~ 216 (313)
T 4fqp_A 150 ITWHSDLGGMPNTS------QVPGFLSGTVTV-------TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP 216 (313)
T ss_dssp EEEEETTCCEEEEE------EEECSSTTCEEE-------EEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEE
T ss_pred EEeecCCccccccc------eeeeeccccccc-------ceeeeecccccccCeeEEEEEEccCcCccceeeeecccccC
Confidence 99999876521100 000011222222 236899999999999999999875443 3455566777767
Q ss_pred CccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
|.+.........+.+|+.+.|.|.+.|.|.| .+.|++++..+.. .....+..|.|.+++.+|+|.|+|.|.|..|..
T Consensus 217 P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 294 (313)
T 4fqp_A 217 PEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP--FAVAQGAQLLIRPVDKPINTTLICNVTNALGAR 294 (313)
T ss_dssp EEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TEEEETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred CccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC--ceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence 7654444444567789999999999999988 6999999987643 244567799999999999999999999999875
Q ss_pred eeeEEEEEEEecCe
Q psy16652 262 MKRNIAVEVEFAPV 275 (384)
Q Consensus 262 ~~~~~~l~v~~~p~ 275 (384)
+..+.|.|.++|-
T Consensus 295 -~~~~~l~V~~~PP 307 (313)
T 4fqp_A 295 -QAELTVQVKEGPP 307 (313)
T ss_dssp -EEEEEEEEECCC-
T ss_pred -EEEEEEEEEeCCC
Confidence 7788888887653
No 81
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.95 E-value=7.1e-27 Score=185.48 Aligned_cols=175 Identities=27% Similarity=0.459 Sum_probs=146.2
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-I--YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 266 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+...... . ..+..|.|.+++.+|+|.|+|.+.+..+......+
T Consensus 14 ~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 93 (192)
T 2iep_A 14 LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93 (192)
T ss_dssp CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEE
T ss_pred ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEE
Confidence 45677899999999999998888999999998776543222 1 13457999999999999999999998877657778
Q ss_pred EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++... ....|.|.+++.+|+
T Consensus 94 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~ 165 (192)
T 2iep_A 94 ALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL--------ESGSLRIHNVQKEDA 165 (192)
T ss_dssp EEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC--------TTSCEEESSCCGGGC
T ss_pred EEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe--------cCCcEEEecCChhhC
Confidence 899999999888777778889999999999999999999999999999877665443 355799999999999
Q ss_pred eEEEEEEEeCCcceE-EEEEEEEeeee
Q psy16652 347 GQYACKAANKYGSAQ-KEIELFDRETQ 372 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~-~~~~l~v~~~~ 372 (384)
|.|+|.|.|..|... ..+.|.|..+|
T Consensus 166 G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 166 GQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 999999999999884 46888887654
No 82
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=202.14 Aligned_cols=247 Identities=22% Similarity=0.282 Sum_probs=169.7
Q ss_pred CCCcchh-ccccCCCCC-CC-CCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 4 PSPFDFV-NRFQNTSTP-WD-PSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 4 ~~~~w~~-~~~~~~~~~-~~-~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
+.+.|++ |+..+.... .. .......+|.|.+++.+|+|.|.|.+....+..... ........+|.+...+.
T Consensus 33 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~------~~~l~v~~~~~~~~~~~ 106 (291)
T 2wim_A 33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA------TVVLEIYQKLTFREVVS 106 (291)
T ss_dssp SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEE------EEEEEEECCCBCCSCCC
T ss_pred CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEE------EEEEEecCCcceEeCCC
Confidence 3789998 443322111 00 001234689999999999999999998753321100 00011234556666667
Q ss_pred ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEE
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 160 (384)
...+.+|+.+.|.|.+.+.+.+.+.|++++..... ....++.+..+ ..|.|.+++.+|+|.|+
T Consensus 107 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~ 169 (291)
T 2wim_A 107 PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNINKSDEGIYR 169 (291)
T ss_dssp SEEEETTSCEEECCCCBCSSCCEEEEECC----CB------------CCCSSEEECTT-----SCEEETTCCGGGCEEEE
T ss_pred ChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc------------cCCceEEEccC-----CCEEEEecchhhCEEEE
Confidence 77899999999999999888889999998764210 12234433321 25999999999999999
Q ss_pred EEEEEccCcc-eeeeEEEEEecCCccccCCCc-eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccE
Q psy16652 161 CEVIISLNNK-VSAEVELIVRRPPIISDNSTR-SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNI 236 (384)
Q Consensus 161 C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~ 236 (384)
|.+.+..++. ....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+........ .+..
T Consensus 170 C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~ 249 (291)
T 2wim_A 170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 249 (291)
T ss_dssp EEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCE
T ss_pred EEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccE
Confidence 9998766443 445677788777766533222 34578899999999999999999999999987765544332 2468
Q ss_pred EEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 237 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..++
T Consensus 250 L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~~ 286 (291)
T 2wim_A 250 LTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFVQH 286 (291)
T ss_dssp EEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC----
T ss_pred EEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEEEec
Confidence 9999999999999999999999876 667777766544
No 83
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.95 E-value=4.4e-26 Score=183.86 Aligned_cols=178 Identities=27% Similarity=0.522 Sum_probs=143.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-eeEe---c--cEEEEcCCCC-CCCeEEEEEEEeCCCCce
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYR---G--NILKIPNITK-TDRGTYYCVAQNGVGRGM 262 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~---~--~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~ 262 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .... + ..|.|.+++. +|+|.|+|.+.|..+...
T Consensus 13 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~ 92 (212)
T 2yd1_A 13 PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAV 92 (212)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEE
T ss_pred CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeE
Confidence 4557789999999999999989999999999887753222 2111 1 4899999999 999999999999888745
Q ss_pred eeEEEEEEEec-------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC-ceeeeeeeccCccccc
Q psy16652 263 KRNIAVEVEFA-------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ-HYSVSHFATSDEFSDT 334 (384)
Q Consensus 263 ~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 334 (384)
+..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.... ++.. ..+
T Consensus 93 ~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~---------~~~ 163 (212)
T 2yd1_A 93 SADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------KDG 163 (212)
T ss_dssp EEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE---------ETT
T ss_pred EeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc---------cCC
Confidence 77888888876 677777767778889999999999999999999999999987543 3322 245
Q ss_pred eEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeeecCCc
Q psy16652 335 SLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQTGDE 376 (384)
Q Consensus 335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~~~ 376 (384)
.|.|.+++.+|.|.|+|.|.|..|..... +.|.|+.....+.
T Consensus 164 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~~ 206 (212)
T 2yd1_A 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206 (212)
T ss_dssp EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C--
T ss_pred eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecccccc
Confidence 89999999999999999999999999765 8999988865543
No 84
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.95 E-value=2.5e-27 Score=204.38 Aligned_cols=240 Identities=16% Similarity=0.107 Sum_probs=168.3
Q ss_pred CCCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEE-EEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 2 IAPSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVT-SVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
|.+.+.|++|+.+.... ++. ..+.+|.|.+++.+|+| .|.|.+.+..+....... ......+|.+...+.
T Consensus 66 p~~~v~W~k~~~~~~~~--~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~------~~v~~~~p~~~~~~~ 136 (329)
T 3oq3_B 66 KDNVVNWEKIGKTRRPL--NRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIV------RSHIRKPPSCIPETY 136 (329)
T ss_dssp TTCEEEEEECSSSCEEC--STT-EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEE------EEEECCCCSCEEEEE
T ss_pred CCCeeEEEECCCCcccc--Cce-eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEE------EEEEcCCCcEecccc
Confidence 44679999998665431 111 45789999999999999 899999875421111000 012233455554444
Q ss_pred ceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+.+|+.+.|.|.+.+.| .+.+.|++++.... ....++... ...|.|.+++.+|+|.|
T Consensus 137 ~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~-------------~~~~~~~~~------~~~L~I~~v~~~D~G~Y 197 (329)
T 3oq3_B 137 ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELI-------------IDGTKYSQS------GQNLIIHNPELEDSGRY 197 (329)
T ss_dssp ETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECC-------------CSSSSEEEE------TTEEEECSCCGGGCEEE
T ss_pred ceEEeCCCcEEEEeccCCCCCCceEEEEECCccCC-------------CCCceEecC------CCEEEEeecChhhCEEE
Confidence 45578899999999999988 88999999775421 112333332 13799999999999999
Q ss_pred EEEEEEc--cCc---ceeeeEEEEEecCCcc--ccCCCceEEeecCceEEEEEEecccC---CC-eEEEEeCCCcccccC
Q psy16652 160 KCEVIIS--LNN---KVSAEVELIVRRPPII--SDNSTRSVIVSEGQTVYLYCYANGFP---AP-TISWRRDNSAALSTG 228 (384)
Q Consensus 160 ~C~~~~~--~~~---~~~~~~~l~v~~~~~~--~~~~~~~~~~~~g~~~~l~C~~~~~~---~~-~v~W~~~~~~~~~~~ 228 (384)
+|.+.|. .++ ..+..+.|.|..++.. ....+....+.+|+.+.|.|.+.+.| .+ .+.|++++..+....
T Consensus 198 ~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~ 277 (329)
T 3oq3_B 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLD 277 (329)
T ss_dssp EEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBC
T ss_pred EEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccC
Confidence 9999975 333 2334477888766521 11135567889999999999999887 67 899999988743322
Q ss_pred ce-eE--------eccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEE
Q psy16652 229 GS-IY--------RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 229 ~~-~~--------~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
.. .. ....|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|
T Consensus 278 ~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~-~~~~~l~v 328 (329)
T 3oq3_B 278 FGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK-TLTTTVVL 328 (329)
T ss_dssp SSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE-EEEEEEEE
T ss_pred CceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce-EEEEEEEe
Confidence 21 11 3568999999999999 9999999998875 55555554
No 85
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.95 E-value=2.6e-26 Score=182.49 Aligned_cols=174 Identities=26% Similarity=0.419 Sum_probs=143.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--ce--eEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--GS--IYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~--~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+.... .. ... ...|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus 12 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~ 90 (194)
T 2a38_A 12 LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQA-T 90 (194)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceE-e
Confidence 455678999999999999998889999999988765543 11 112 3489999999999999999999987764 5
Q ss_pred eEEEEEEE---ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652 264 RNIAVEVE---FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 264 ~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
..+.|.|. .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++.+.... ....|.|.+
T Consensus 91 ~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~L~i~~ 165 (194)
T 2a38_A 91 STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG-----DLYSLLIAE 165 (194)
T ss_dssp EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEET-----TEEEEEEEE
T ss_pred EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcC-----CEEEEEECC
Confidence 56777777 5777777777778889999999999999999999999999999877766554311 234799999
Q ss_pred cCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 341 IERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
++.+|.|.|+|.|.|..|....++.|.|+
T Consensus 166 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 166 AYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp ECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 99999999999999999999999998874
No 86
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.95 E-value=9.6e-27 Score=197.14 Aligned_cols=241 Identities=16% Similarity=0.126 Sum_probs=166.1
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK 84 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 84 (384)
.+.|+++...... ......+.+|.|.+++.+|+|.|.|.+.+........ ..+.....+..+...+....+
T Consensus 31 ~v~W~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~------~~l~V~~~~~~~~~~~~~~~v 101 (289)
T 3ejj_X 31 SVEWDGPISPYWT---LDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT------IHLYVKDPAHSWNLLAQEVTV 101 (289)
T ss_dssp CCEEECSCSSSSE---ECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEE------EEEEECCSSCSEEESCSEEEE
T ss_pred cEEEccCCCceEE---EeccCCccEEEEeeeccccCEEEEEEEeccCCcceeE------EEEEEeCCCcceecccceEEE
Confidence 5889977533321 1234567899999999999999999987643221100 001111122225556677779
Q ss_pred eccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 85 DIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
.+|+++.|.|.+.+.+... +.|++.+... .....++.+..+ ..|.|.+++.+|+|.|+|.+
T Consensus 102 ~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~-------------~~~~~~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a 163 (289)
T 3ejj_X 102 VEGQEAVLPCLITDPALKDSVSLMREGGRQ-------------VLRKTVYFFSPW-----RGFIIRKAKVLDSNTYVCKT 163 (289)
T ss_dssp ETTSCEEECEEESCGGGGGSEEEEEGGGEE-------------CCTTCCEEEETT-----TEEEESSCCGGGCEEEEEEE
T ss_pred ecCCceEeEEEccCCCcceEEEEEecCCee-------------cCCCccEEECCC-----CCEEEeecccccCEEEEEEE
Confidence 9999999999998765544 9999855431 112234433321 25999999999999999999
Q ss_pred EEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccC------ceeE
Q psy16652 164 IISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTG------GSIY 232 (384)
Q Consensus 164 ~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~------~~~~ 232 (384)
.++..+..+..+.|.|. .+|.+... +....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.... ....
T Consensus 164 ~~~~~~~~~~~~~l~V~~~~~~~p~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~ 242 (289)
T 3ejj_X 164 MVNGRESTSTGIWLKVNRVHPEPPQIKLE-PSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYK 242 (289)
T ss_dssp EETTEEEECCCEEEEEESSCCCCCEEEEE-SSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEE
T ss_pred EeCCCccccccEEEEEEECCCCCCeEEec-CCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEE
Confidence 86665667778888887 34544432 34456679999999999987 7888999999987665432 2223
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
....|.|.+++.+|+|.|+|.|.|..|.. +.++.|.+..++
T Consensus 243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~~~~~ 283 (289)
T 3ejj_X 243 KVRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQVVESH 283 (289)
T ss_dssp EEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEECC---
T ss_pred eeEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEEEecc
Confidence 45689999999999999999999999876 667777665544
No 87
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.95 E-value=5.8e-26 Score=179.84 Aligned_cols=170 Identities=25% Similarity=0.373 Sum_probs=140.2
Q ss_pred eEEeec-CceEEEEEEecccCC--CeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 192 SVIVSE-GQTVYLYCYANGFPA--PTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 192 ~~~~~~-g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
...+.+ |+.+.|.|.+.+.+. +.+.|++++..+..... ...+..|.|.+++.+|+|.|+|.+.|. +. .+..+.|
T Consensus 11 ~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~-~~~~~~l 87 (190)
T 2wv3_A 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-NASNMEYRINKPRAEDSGEYHCVYHFV-SA-PKANATI 87 (190)
T ss_dssp CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB-CCSEEEEEESSCCGGGCEEEEEEEEET-TE-EEEEEEE
T ss_pred eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce-EeccEEEEEecCCcccCEEEEEEEEeC-Cc-ccccEEE
Confidence 345566 999999999988776 78999999877654432 225678999999999999999999998 54 4788899
Q ss_pred EEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEE--CCEEec---CCCceeeeeeeccCccccceEEEeecC-
Q psy16652 269 EVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIM---NNQHYSVSHFATSDEFSDTSLRVITIE- 342 (384)
Q Consensus 269 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~- 342 (384)
.|..+|.+...+....+..|+.+.|.|.+.|+|.|.+.|++ +|..+. ...++.+.. ......|.|.+++
T Consensus 88 ~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~ 162 (190)
T 2wv3_A 88 EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-----KENYTELNIVNLQI 162 (190)
T ss_dssp EEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE-----CSSEEEEEECSCCT
T ss_pred EEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec-----CCCeeEEEEEeccc
Confidence 99999998887777788999999999999999999999999 787764 334444332 1123579999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 343 RRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
.+|.|.|+|.|.|..|....++.|.|+
T Consensus 163 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 163 TEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp TTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 799999999999999999999999886
No 88
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.95 E-value=5.5e-27 Score=198.70 Aligned_cols=234 Identities=14% Similarity=0.156 Sum_probs=163.2
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK 84 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 84 (384)
.+.|++|+.++... ...+.+|.|.+++.+|+|.|.|.+.+...... .+. ...+|.+...+....+
T Consensus 39 ~i~W~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~---------~l~-V~~~~~~~~~~~~~~~ 103 (290)
T 2o26_X 39 FVRWTFKTYFNEMV-----ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI---------YVF-VRDPAKLFLVGLPLFG 103 (290)
T ss_dssp EEEEEEECSSSCEE-----EECSSEEEETTCCGGGCEEEEEEESSSCEEEE---------EEE-EECSSCCBCCCCCEEE
T ss_pred cEEEecCCcceeee-----cCCCceEEEeccCHHhCeEEEEEeeCCccEEE---------EEE-EeCCCcccccccceEE
Confidence 57899998766211 12348999999999999999999876210000 001 1123343455667778
Q ss_pred eccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCe-eEEEE
Q psy16652 85 DIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAG-IYKCE 162 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~ 162 (384)
.+|+.+.|.|.+.+ |. +.+.|++.+.... ..+.++..... ..|.|.+++.+|+| .|+|.
T Consensus 104 ~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l-------------~~~~~~~~~~~-----~~L~i~~v~~~d~G~~Y~C~ 164 (290)
T 2o26_X 104 KEDSDALVRCPLTD-PQVSQYSLIECDGKSL-------------PTDLTFVPNPK-----AGITIKNVKRAYHRLCVRCA 164 (290)
T ss_dssp ETTSCEEECCCBSC-CSCEEEEEEETTSCCC-------------CTTCEEEEETT-----TEEEEESCCGGGTTCEEEEE
T ss_pred ecCCeEEEeCcCCC-CCCceEEEEeCCCcCC-------------CCCCceeeCCC-----CCEEEecccHHHCCCEEEEE
Confidence 99999999999985 66 8999976443311 11233333321 26999999999999 99999
Q ss_pred EEEccCcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcc----cccCc----
Q psy16652 163 VIISLNNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA----LSTGG---- 229 (384)
Q Consensus 163 ~~~~~~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~----~~~~~---- 229 (384)
+.+..+...+..+.|.|. .+|.+... +....+.+|+.+.|.|.+.+.|.+. +.|++++..+ .....
T Consensus 165 a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~-~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~ 243 (290)
T 2o26_X 165 AQRDGTWLHSDKFTLKVREAIKAIPVVSVP-ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR 243 (290)
T ss_dssp EEETTEEEECCCEEEEEECCCCSCCEEECS-CSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE
T ss_pred EEECCceEEeEEEEEEEEeCCCCCCccccC-CCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc
Confidence 997643334556778776 55555433 3444788999999999999988885 9999998773 22111
Q ss_pred ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
.......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 244 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~P 290 (290)
T 2o26_X 244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVVEKG 290 (290)
T ss_dssp ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEEeCC
Confidence 22345689999999999999999999998876 677778776654
No 89
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.95 E-value=2.8e-26 Score=182.82 Aligned_cols=175 Identities=28% Similarity=0.375 Sum_probs=143.0
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-E---ec--cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-Y---RG--NILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~---~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... . .+ ..|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus 11 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~ 89 (197)
T 2j8h_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-S 89 (197)
T ss_dssp CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-E
T ss_pred CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-e
Confidence 456778999999999999998899999999987766443221 1 12 289999999999999999999987764 7
Q ss_pred eEEEEEEEecCeEEecC-----CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEE
Q psy16652 264 RNIAVEVEFAPVITINR-----PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV 338 (384)
Q Consensus 264 ~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 338 (384)
..+.|.|..+|.+..+. ....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... .....|.|
T Consensus 90 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i 164 (197)
T 2j8h_A 90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-----RSFTSLVF 164 (197)
T ss_dssp EEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC-----SSEEEEEC
T ss_pred EEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc-----CCceEEEE
Confidence 78888888888765433 224567799999999999999999999999999987776655421 13568999
Q ss_pred ee-cCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 339 IT-IERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 339 ~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.+ ++.+|.|.|+|.|.|..|..+.++.|.|.+
T Consensus 165 ~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp TTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred eCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence 99 999999999999999999999999998863
No 90
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.94 E-value=1.9e-28 Score=209.65 Aligned_cols=231 Identities=13% Similarity=0.082 Sum_probs=157.8
Q ss_pred CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEe-ecCCCc
Q psy16652 24 TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSV-QYADDY 102 (384)
Q Consensus 24 ~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~-~~~~~~ 102 (384)
..++.+|.|.+++.+|+|.|.|.+.....+...... .+. ......+.+...+.......|+.+.|.|.. .+.|.+
T Consensus 70 ~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~---~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~ 145 (308)
T 4fom_A 70 SLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSST---TVT-VLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVA 145 (308)
T ss_dssp SSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEE---EEE-EEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCC
T ss_pred CCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeee---EEE-eeeccccccccccceeEEcCCceEEEEEEecCCcCCc
Confidence 346688999999999999999998653111110000 000 001111223333455556788999999986 467888
Q ss_pred cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec
Q psy16652 103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR 181 (384)
Q Consensus 103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~ 181 (384)
.+.|++++........ ....... .....|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.|..
T Consensus 146 ~i~W~~~~~~~~~~~~--------~~~~~~~-------~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~ 210 (308)
T 4fom_A 146 HIDWEGDLGEMESTTT--------SFPNETA-------TIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQY 210 (308)
T ss_dssp EEEECCCSSBCCEEEE--------ECTTSCE-------EEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCE
T ss_pred eEEEEECCcccccccc--------eeeeecc-------cccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEec
Confidence 9999998865321110 0011111 11236999999999999999999875543 345566677777
Q ss_pred CCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+|.+.........+..|+.+.|.|.+.|.|.| .+.|++++..+... .....+..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 211 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~ 289 (308)
T 4fom_A 211 APEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDG-LLASDNTLHFVHPLTFNYSGVYICKVTNSLGQ 289 (308)
T ss_dssp EEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSS-CBCSTTEEECCSCCCSCCCSEEEEEEEETTEE
T ss_pred CCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCc-EEEcCCeEEEECCCChhhCEEEEEEEEeCCCc
Confidence 77665444455567789999999999999888 69999998766433 22223445667899999999999999999987
Q ss_pred ceeeEEEEEEEecCe
Q psy16652 261 GMKRNIAVEVEFAPV 275 (384)
Q Consensus 261 ~~~~~~~l~v~~~p~ 275 (384)
. +..+.|.|.++|.
T Consensus 290 ~-~~~~~l~V~~~P~ 303 (308)
T 4fom_A 290 R-SDQKVIYISDPPH 303 (308)
T ss_dssp E-EEEEECCEECCC-
T ss_pred E-EEEEEEEEEcCCC
Confidence 5 7788899988885
No 91
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=177.45 Aligned_cols=174 Identities=28% Similarity=0.456 Sum_probs=138.4
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRN 265 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~ 265 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....+..|.|.+++.+|+|.|+|.+.+..+.. ....
T Consensus 9 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 88 (189)
T 2v5t_A 9 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 88 (189)
T ss_dssp CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence 4456789999999999998888899999999876653221 12235679999999999999999999976443 3456
Q ss_pred EEEEEEecCeEEecCC--CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652 266 IAVEVEFAPVITINRP--RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343 (384)
Q Consensus 266 ~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 343 (384)
+.+.+..+|.+...+. ...+..|+.+.|.|.+.|.|.+.+.|+++|..+....++.... ....|.|.+++.
T Consensus 89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-------~~~~L~i~~~~~ 161 (189)
T 2v5t_A 89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG-------SNTELTVRNIIN 161 (189)
T ss_dssp EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET-------TTTEEEECSCCG
T ss_pred EEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec-------CCCEEEEcCCCh
Confidence 7788888887766544 3467789999999999999999999999999998776655432 357899999999
Q ss_pred CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 344 RQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 344 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+|+|.|+|.|.|..|....++.|.|..
T Consensus 162 ~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 162 SDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp GGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 999999999999999999999888763
No 92
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.94 E-value=2.4e-25 Score=179.46 Aligned_cols=177 Identities=24% Similarity=0.393 Sum_probs=137.3
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE-----eccEEEEcCC-CCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNI-TKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ .+..|.|.++ ..+|+|.|+|.+.|..+.. .
T Consensus 13 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~ 91 (212)
T 2yd6_A 13 PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEI-S 91 (212)
T ss_dssp CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEE-E
T ss_pred cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcE-E
Confidence 4556789999999999999989999999999887755433222 2347999999 5999999999999987764 6
Q ss_pred eEEEEEEEec-------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC---ceeeeeeeccCcccc
Q psy16652 264 RNIAVEVEFA-------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ---HYSVSHFATSDEFSD 333 (384)
Q Consensus 264 ~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~ 333 (384)
..+.|.|... |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+.... ++.... . ...
T Consensus 92 ~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~--~---~~~ 166 (212)
T 2yd6_A 92 VSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR--S---ESI 166 (212)
T ss_dssp EEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE--E---TTE
T ss_pred EEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe--c---CCe
Confidence 6778888764 666666666778889999999999999999999999999886542 222211 1 135
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeee
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQ 372 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~ 372 (384)
..|.|.+++.+|.|.|+|.|.|..|...++ ..|.|...+
T Consensus 167 ~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~ 206 (212)
T 2yd6_A 167 GALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206 (212)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence 789999999999999999999999987543 666666554
No 93
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.94 E-value=2.8e-25 Score=179.15 Aligned_cols=190 Identities=23% Similarity=0.411 Sum_probs=148.0
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... ....++.+... ..+...|.|.
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~ 69 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVS-------------GTQSRYTVLEQ-PGGISILRIE 69 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-------------TTSTTEEEEEE-TTTEEEEEES
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECC-------------CCcceeEEEEc-CCCeEEEEEE
Confidence 467899999999999999999999999988888999999775421 12345554432 3345789999
Q ss_pred ecCC-CCCeeEEEEEEEccCcceeeeEEEEEecC-------CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652 150 EIQE-TDAGIYKCEVIISLNNKVSAEVELIVRRP-------PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN 221 (384)
Q Consensus 150 ~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~ 221 (384)
+++. +|+|.|+|.+.+..+...+..+.|.|..+ |.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus 70 ~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~ 148 (212)
T 2yd1_A 70 PVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQ 148 (212)
T ss_dssp SCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEECSSCCEEEEEETT
T ss_pred ecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEeccCCCCeEEEEECC
Confidence 9999 99999999998665554777888888765 3333 2234567889999999999999999999999998
Q ss_pred Cccccc-CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 222 SAALST-GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 222 ~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
..+... ......++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|+..+
T Consensus 149 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 149 TKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp EECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred eEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 877653 33445667999999999999999999999988765555788887654
No 94
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=177.83 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=140.2
Q ss_pred CceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccCc--eeEe-----------ccEEEEcCCCCCCCeEEEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGG--SIYR-----------GNILKIPNITKTDRGTYYCVAQ 255 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~--~~~~-----------~~~l~i~~~~~~d~G~Y~C~~~ 255 (384)
+....+.+|+++.|.|.+. +.|.+.+.|++++..+..... .... ...|.|.+++.+|+|.|+|.+.
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 88 (195)
T 2c5d_C 9 PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVF 88 (195)
T ss_dssp CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEE
T ss_pred hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEE
Confidence 5667889999999999998 888899999999887655422 1111 4689999999999999999999
Q ss_pred eCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDT 334 (384)
Q Consensus 256 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (384)
+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+...... ....
T Consensus 89 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----------~~~~ 158 (195)
T 2c5d_C 89 LGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----------GPQR 158 (195)
T ss_dssp ETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----------SCCE
T ss_pred eCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----------CCCC
Confidence 977665556688999999998887777888899999999999999999 99999999888655432 1467
Q ss_pred eEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEE
Q psy16652 335 SLRVITIERRQFGQYACKAANKYGSAQ-KEIELFD 368 (384)
Q Consensus 335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 368 (384)
.|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 159 ~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 159 SLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred eEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 79999887 78999999999999986 6888888
No 95
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.94 E-value=2.6e-25 Score=174.81 Aligned_cols=167 Identities=23% Similarity=0.412 Sum_probs=139.3
Q ss_pred CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITKTDRGTYYCVAQNGVGRGM 262 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 262 (384)
.+....+.+|+++.|.|.+.+.|.+.+.|++++..+......... ...|.|.+++.+|+|.|+|.+.+..+...
T Consensus 8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~ 87 (182)
T 1rhf_A 8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87 (182)
T ss_dssp CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEE
Confidence 356678899999999999998888999999998776554332221 35899999999999999999999876655
Q ss_pred eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeec
Q psy16652 263 KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341 (384)
Q Consensus 263 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 341 (384)
+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..+..... ....|.|.++
T Consensus 88 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------------~~~~L~i~~~ 155 (182)
T 1rhf_A 88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------------SPSVLNVTGV 155 (182)
T ss_dssp CCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------------SSEEEEECCC
T ss_pred EEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------------CceEEEEecc
Confidence 67889999999999888887888999999999999999999 9999999988854321 3667888887
Q ss_pred CCCCCeEEEEEEEeCCcceEE-EEEEEEe
Q psy16652 342 ERRQFGQYACKAANKYGSAQK-EIELFDR 369 (384)
Q Consensus 342 ~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~ 369 (384)
+|+|.|+|.|.|..|...+ ++.|.|+
T Consensus 156 --~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 156 --TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp --SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred --ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 5899999999999998864 7777763
No 96
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.94 E-value=1.8e-25 Score=178.08 Aligned_cols=175 Identities=19% Similarity=0.345 Sum_probs=142.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 265 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... . ..|.|.+++.+|+|.|+|.+.|..+.. ...
T Consensus 14 ~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~ 92 (197)
T 3lcy_A 14 MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETS 92 (197)
T ss_dssp CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEE
T ss_pred CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEE
Confidence 45667899999999999988888999999998877654443322 2 279999999999999999999887764 667
Q ss_pred EEEEEEecCeEEec---CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecC
Q psy16652 266 IAVEVEFAPVITIN---RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342 (384)
Q Consensus 266 ~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 342 (384)
+.+.|..+|.+... +....+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+... .....|.|.++.
T Consensus 93 ~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~ 167 (197)
T 3lcy_A 93 SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT-----EHYTHLVMKNVQ 167 (197)
T ss_dssp EEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEC-----SSEEEEEESSCC
T ss_pred EEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEc-----CCEEEEEEcccc
Confidence 78888887776532 2334567899999999999999999999999999987777665431 123679999998
Q ss_pred C-CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 343 R-RQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 343 ~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
. +|.|.|+|.|.|..|....++.|.|.+
T Consensus 168 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 168 RKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp HHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred chhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 4 899999999999999999999999875
No 97
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.94 E-value=2.4e-26 Score=198.56 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=158.3
Q ss_pred CCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe--eeeCcceeeecc---CcEEEEEE-ee
Q psy16652 24 TQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI--SYISQEQIKDIA---QTADLKCS-VQ 97 (384)
Q Consensus 24 ~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~v~~g---~~v~l~C~-~~ 97 (384)
...+.+|.|.+++.+|+|.|.|.+.....+.... ...+ ....+|.+ ...+....+.+| +.+.|.|. ..
T Consensus 88 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----~~~l-~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~ 161 (331)
T 3u83_A 88 SFTDGTIRLSRLELEDEGVYICEFATFPTGNRES-----QLNL-TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN 161 (331)
T ss_dssp SSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEE-----EEEE-EEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEE
T ss_pred CCCCceEEEcccCcccCcEEEEEEEecCCCccEE-----EEEE-EEecCCcceeecCCCceeecCCCccceEEEEEEecC
Confidence 4567889999999999999999854321111100 0000 11123443 224555667888 77999998 67
Q ss_pred cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEE
Q psy16652 98 YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177 (384)
Q Consensus 98 ~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 177 (384)
+.|.+.+.|+++...... .......+..+.+. ..|.|.+++.+|+|.|+|.+.+.. +..+..+.|
T Consensus 162 ~~p~~~i~W~~~~~~~~~-------~~~~~~~~~~~~~~-------~~L~i~~~~~~d~G~Y~C~a~n~~-~~~~~~~~l 226 (331)
T 3u83_A 162 GKPPSVVSWETRLKGEAE-------YQEIRNPNGTVTVI-------SRYRLVPSREAHQQSLACIVNYHM-DRFKESLTL 226 (331)
T ss_dssp EBSCCEEEEEESSCCEEE-------EEEEECTTSCEEEE-------EEEEECCCGGGTTCEEEEEEEETT-EEEEEEEEC
T ss_pred CcCCceEEEEcCCCCccc-------cceeECCCCcEEEE-------EEEEEEeccccCCCEEEEEEecCC-CcceeeEEE
Confidence 778889999996432100 00001112233222 369999999999999999998654 446677788
Q ss_pred EEecCCccccCCCceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEc-CCCCCCCeEEEEEEE
Q psy16652 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIP-NITKTDRGTYYCVAQ 255 (384)
Q Consensus 178 ~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~C~~~ 255 (384)
.|..+|.+.........+.+|+.+.|.|.+.+.|.+. +.|++++..+... ....+..|.|. ++..+|+|.|+|.|.
T Consensus 227 ~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~--~~~~~~~L~i~~~v~~~d~G~Y~C~a~ 304 (331)
T 3u83_A 227 NVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEAT 304 (331)
T ss_dssp CEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECSCCCGGGCEEEEEEEE
T ss_pred EEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc--ceecCcEEEEeCCCccccCeEEEEEEE
Confidence 8877776554334445578899999999999999997 9999998876433 44467789999 899999999999999
Q ss_pred eCCCCceeeEEEEEEEecCe
Q psy16652 256 NGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 256 ~~~~~~~~~~~~l~v~~~p~ 275 (384)
|..|.. +..+.|.|...+.
T Consensus 305 N~~G~~-~~~~~l~V~~~~~ 323 (331)
T 3u83_A 305 NPIGTR-SGQVEVNITEAAA 323 (331)
T ss_dssp ETTEEE-EEEEEECCBC---
T ss_pred eccccc-eEEEEEEEeccch
Confidence 998875 7778887776553
No 98
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.94 E-value=7.1e-25 Score=173.45 Aligned_cols=170 Identities=21% Similarity=0.387 Sum_probs=136.0
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEe-CCCcccccCceeEe----ccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRR-DNSAALSTGGSIYR----GNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
+....+.+|+++.|.|.+.+.|. .+.|++ ++..+......... ...|.|.+++.+|+|.|+|.+.+..+...+.
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~ 87 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA 87 (189)
T ss_dssp CSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE
T ss_pred CCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCCcEEE
Confidence 45667899999999999988766 999999 56555444333222 2489999999999999999999988776677
Q ss_pred EEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC--CCceeeeeeeccCccccceEEEeecC
Q psy16652 265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVITIE 342 (384)
Q Consensus 265 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~ 342 (384)
.+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..++... .+..|.|.+++
T Consensus 88 ~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~ 159 (189)
T 2v44_A 88 TVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML--------ANNNLQILNIN 159 (189)
T ss_dssp EEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEEC--------TTSCEEETTCC
T ss_pred EEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEe--------cCCcEEEEEcC
Confidence 8899999999887767777889999999999999999999999999988753 3343332 35689999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 343 RRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.+|+|.|+|.|.|..|.......+.|
T Consensus 160 ~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 160 KSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp GGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred cccCeEEEEEEEccccCceeeeeEEE
Confidence 99999999999999977765544444
No 99
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.94 E-value=4.6e-25 Score=174.99 Aligned_cols=172 Identities=26% Similarity=0.449 Sum_probs=138.3
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... +..|.|.+++.+|+|.|+|.+.+..+.. ...+.|
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l 90 (192)
T 2va4_A 12 FNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFL 90 (192)
T ss_dssp EEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred cEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEcccccc-ceEEEE
Confidence 3567889999999999998888999999999877655444332 4579999999999999999999987764 577788
Q ss_pred EEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC--CEEecCC-----CceeeeeeeccCccccceEEEeec
Q psy16652 269 EVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD--GVQIMNN-----QHYSVSHFATSDEFSDTSLRVITI 341 (384)
Q Consensus 269 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~ 341 (384)
.|..+|.+...+ ...+..|+.+.|.|.+.+.|.+.+.|+++ +..+... .++.... ......|.|.++
T Consensus 91 ~V~~~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~ 164 (192)
T 2va4_A 91 QVFVQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG-----QHGSSSLHIKDV 164 (192)
T ss_dssp EEEEEEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEE-----ETTEEEEEEESC
T ss_pred EEEccCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEee-----ccCceEEEEecC
Confidence 888888876543 34566799999999999999999999998 6666442 2222211 113468999999
Q ss_pred CCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 342 ERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 342 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.+|.|.|+|.|.|..|....++.|.|+
T Consensus 165 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 165 KLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 9999999999999999999999998874
No 100
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.94 E-value=8.2e-26 Score=179.67 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=122.8
Q ss_pred EEeecCceEEEEEE---ecccCCCeEEEEeCCCcccccC-----------------cee----EeccEEEEcCCCCCCCe
Q psy16652 193 VIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAALSTG-----------------GSI----YRGNILKIPNITKTDRG 248 (384)
Q Consensus 193 ~~~~~g~~~~l~C~---~~~~~~~~v~W~~~~~~~~~~~-----------------~~~----~~~~~l~i~~~~~~d~G 248 (384)
+.+..|+.+.|.|. +.+.|.+.+.|+|++....... ... .....|.|.+++.+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 46789999999996 4577889999999875432110 000 01247999999999999
Q ss_pred EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC----CCceeeee
Q psy16652 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN----NQHYSVSH 324 (384)
Q Consensus 249 ~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~----~~~~~~~~ 324 (384)
.|+|.+.|..+.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. +.++....
T Consensus 83 ~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~ 161 (203)
T 4fa8_A 83 NYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK 161 (203)
T ss_dssp EEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred EEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence 9999999988775 677889999999888877778889999999999999999999999987755432 22222211
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
+ ..-..+.|.+++.+|+|.|+|.|+|..|..+..
T Consensus 162 --~---g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 162 --D---GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp --T---SCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred --C---CCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 0 012234567899999999999999999988753
No 101
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.94 E-value=1.4e-27 Score=207.93 Aligned_cols=246 Identities=13% Similarity=0.154 Sum_probs=135.2
Q ss_pred CCCCcchhccccCCC-C------CCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652 3 APSPFDFVNRFQNTS-T------PWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI 75 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~-~------~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 75 (384)
.+.+.|++|+..... . ...+....+.+|.|.+++.+|+|.|.|.+.+..........+ .+ .......+..
T Consensus 47 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l--~V-~~~~~~~~~~ 123 (349)
T 4dep_C 47 GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPL--EV-VQKDSCFNSP 123 (349)
T ss_dssp TCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE--EE-ECCCTTSCCS
T ss_pred CceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEE--EE-ecCCcccCcc
Confidence 378999999832110 0 111222346689999999999999999998752211110000 00 0001111111
Q ss_pred eeeCcceeeeccCcEEEEEEe-----ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 76 SYISQEQIKDIAQTADLKCSV-----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
...+....+.+|+++.|.|.. .+.|.+.+.|++++.... ...++.... ..|.|.+
T Consensus 124 ~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~--------------~~~~~~~~~------~~L~i~~ 183 (349)
T 4dep_C 124 MKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ--------------NFNNVIPEG------MNLSFLI 183 (349)
T ss_dssp CCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC--------------SCSSEEEET------TEEEEES
T ss_pred cccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC--------------CccceeecC------CEEEEee
Confidence 122345568899999999985 566888999999775421 011111111 3699999
Q ss_pred cCCCCCeeEEEEEEEccCcc---eeeeEEEEEec------CCccccCCCce-EEeecCceEEEEEEec----ccCCCeEE
Q psy16652 151 IQETDAGIYKCEVIISLNNK---VSAEVELIVRR------PPIISDNSTRS-VIVSEGQTVYLYCYAN----GFPAPTIS 216 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~------~~~~~~~~~~~-~~~~~g~~~~l~C~~~----~~~~~~v~ 216 (384)
++.+|+|.|+|.+.+..++. .+..+.|.|.. +|.+....... ..+.+|+.+.|.|.+. +.|.+.+.
T Consensus 184 v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~ 263 (349)
T 4dep_C 184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVW 263 (349)
T ss_dssp CCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEE
T ss_pred eeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEE
Confidence 99999999999999876444 36777787765 34333221112 2678999999999997 56888999
Q ss_pred EEeCCCcccccC-ce-------------eEeccEEEEcCCCCCCC-eEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 217 WRRDNSAALSTG-GS-------------IYRGNILKIPNITKTDR-GTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 217 W~~~~~~~~~~~-~~-------------~~~~~~l~i~~~~~~d~-G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
|++++..+.... .. ......|.|.++..+|+ |.|+|.|.|..|.. ...+.|.|..
T Consensus 264 W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v~~ 333 (349)
T 4dep_C 264 WTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQKV 333 (349)
T ss_dssp EESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEE-EEECC-----
T ss_pred EEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE-EEEEEEeeec
Confidence 999998765411 11 11234599999999999 99999999998875 5667777765
No 102
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.93 E-value=1.1e-24 Score=172.74 Aligned_cols=171 Identities=20% Similarity=0.331 Sum_probs=138.8
Q ss_pred CceEEeecCceEEEEEEecccC-CCeEEEEe-CCCcccccCcee-E-----eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-APTISWRR-DNSAALSTGGSI-Y-----RGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~-~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+....... . ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 88 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ 88 (191)
T ss_dssp SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence 4556789999999999998866 78999999 776655332221 1 23589999999999999999999987555
Q ss_pred eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEe
Q psy16652 262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 262 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~ 339 (384)
.+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.... ++... .+..|.|.
T Consensus 89 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--------~~~~L~i~ 160 (191)
T 1epf_A 89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL--------SNNYLQIR 160 (191)
T ss_dssp EEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC--------TTSCEEET
T ss_pred eEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe--------cCCeEEEC
Confidence 577888999999998888878888999999999999999999999999999886433 22221 34579999
Q ss_pred ecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 340 TIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
+++.+|+|.|+|.|.|..|.......+.|
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999999999976666555554
No 103
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.93 E-value=3.9e-25 Score=176.79 Aligned_cols=168 Identities=16% Similarity=0.233 Sum_probs=130.0
Q ss_pred ceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccccCceeEe-c-----cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 191 RSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYR-G-----NILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
....+.+|+.+.|.|.+.+ .|.+.+.|++++..+......... + ..|.|.+++.+|+|.|+|.+.| +.. .
T Consensus 10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a-~ 86 (207)
T 3rbs_A 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKA-T 86 (207)
T ss_dssp EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTE-E
T ss_pred CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCe-E
Confidence 3567889999999999964 788999999999988655443221 1 2699999999999999999999 333 2
Q ss_pred eEEEEEEE---------------------ecCeEEecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCcee
Q psy16652 264 RNIAVEVE---------------------FAPVITINRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYS 321 (384)
Q Consensus 264 ~~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~ 321 (384)
....+.+. .+|.+.... ...+.+|+.+.|.|.+.|. |.|.+.|+++|.++..+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~ 165 (207)
T 3rbs_A 87 NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD 165 (207)
T ss_dssp EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC
T ss_pred EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE
Confidence 22332211 146554333 3567889999999999998 999999999999997665532
Q ss_pred eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
.. ....+|.|.+++.+|+|.|+|.|.|..|....++.|.+.
T Consensus 166 ~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 166 FK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp CS-------SEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred cC-------CCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 21 134579999999999999999999999999999988764
No 104
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.93 E-value=6.7e-25 Score=180.63 Aligned_cols=192 Identities=24% Similarity=0.398 Sum_probs=139.0
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.+..+.. ..
T Consensus 22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~ 100 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQ 100 (241)
T ss_dssp CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EE
Confidence 45678999999999999999888999999998776543321 2234589999999999999999999987764 56
Q ss_pred EEEEEEEe----cCeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeee---eccCccc
Q psy16652 265 NIAVEVEF----APVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHF---ATSDEFS 332 (384)
Q Consensus 265 ~~~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~---~~~~~~~ 332 (384)
.+.+.|.. +|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++ +|..+........... .......
T Consensus 101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 180 (241)
T 3grw_A 101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180 (241)
T ss_dssp EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEE
T ss_pred EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCC
Confidence 67777765 233332 3455667889999999999999999999999 8877765543322211 1111224
Q ss_pred cceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCccCCccc
Q psy16652 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIFY 382 (384)
Q Consensus 333 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~ 382 (384)
...|.|.+++.+|.|.|+|.|.|..|....++.|.|.++|..+..+..++
T Consensus 181 ~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~ve~~ 230 (241)
T 3grw_A 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEAD 230 (241)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------------
T ss_pred ceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccceecc
Confidence 56799999999999999999999999999999999999988776655443
No 105
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=173.38 Aligned_cols=183 Identities=20% Similarity=0.339 Sum_probs=141.3
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEee-cCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc-----eEE
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS-----TYI 145 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 145 (384)
+|.+...+....+.+|++++|.|.+. +.+.+.+.|++++...... ...++.+....... ...
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~~~~~~~~~~ 69 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELA------------DSTQTQVPLGEDEQDDWIVVSQ 69 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSC------------EEEEEEEECSSSTTSEEEEEEE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccC------------CCCceEEEEccccccceeeccE
Confidence 57888889999999999999999998 8888899999977542111 00123333221111 468
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcc
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAA 224 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~ 224 (384)
|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+
T Consensus 70 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~ 148 (195)
T 2c5d_C 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEE-PEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPL 148 (195)
T ss_dssp EEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEEC-CCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBS
T ss_pred EEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcC-CCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEec
Confidence 9999999999999999999765555566688999888866543 445778899999999999999999 99999999877
Q ss_pred cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
...... .....|.|.+++ |+|.|+|.|.|..|...+..+.|.|
T Consensus 149 ~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 149 ATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp SSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 654332 456689999987 7899999999988876446777777
No 106
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=5e-25 Score=173.18 Aligned_cols=179 Identities=22% Similarity=0.344 Sum_probs=135.4
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.... ...++.+..+.......|.|.++
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~--------------~~~~~~~~~~~~~~~~~L~i~~~ 67 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQ--------------NLDQLYIPVSEQHWIGFLSLKSV 67 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECC--------------SSEEEEEEEETTEEEEEEEESSC
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecC--------------CCCceEEEecCCCceEEEEEeec
Confidence 4567777888889999999999999988888999999765421 11222333322333568999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCce
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGS 230 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~ 230 (384)
+.+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....
T Consensus 68 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~-- 144 (182)
T 1rhf_A 68 ERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-- 144 (182)
T ss_dssp CGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE--
T ss_pred CcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEec-CcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC--
Confidence 9999999999998664445677888999888876643 445678999999999999999998 999999987664332
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
.....|.|.++ +|+|.|+|.|.|..|...+..+.|.|
T Consensus 145 -~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 145 -PSPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp -ESSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -CCceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 25668999888 58999999999998876455677665
No 107
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.93 E-value=1.9e-25 Score=185.43 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=122.5
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-----CCeEEEEeCCC--c
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNS--A 223 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~--~ 223 (384)
++.+|+|.|+|.+. +.......+.+..++.+. ..+....+.+|+++.|.|.+.+.+ .+.+.|++++. .
T Consensus 11 v~~~dsg~Y~C~a~----g~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~ 85 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS----GYSFTNYWMNWLRELVMT-QSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS 85 (254)
T ss_dssp -------------------------------CCCEE-EECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred ecCCccEEEEEcCc----hhhhhhhhhheeeceeEE-eCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence 67899999999986 222223333333333333 235567899999999999998877 37899998542 1
Q ss_pred cc----------c--cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcc
Q psy16652 224 AL----------S--TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQG 284 (384)
Q Consensus 224 ~~----------~--~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~ 284 (384)
+. . ..+... ....|.|.+++.+|+|.|+|.+.|..+........+.|.. +|.+...++...
T Consensus 86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~ 165 (254)
T 2c1o_A 86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSE 165 (254)
T ss_dssp CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHH
T ss_pred ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChh
Confidence 10 0 011111 1237999999999999999999987554333334555553 677776555545
Q ss_pred cccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeee--eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 285 QALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVS--HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 285 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
...|+.++|.|.+.|. |+ +.+.|+++|..+......... ....+.....+.|.|.++..+|+|.|+|.|.|.....
T Consensus 166 ~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 166 QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 5578899999999884 44 369999999988655111111 1111111124679999999999999999999998765
Q ss_pred EEE
Q psy16652 361 QKE 363 (384)
Q Consensus 361 ~~~ 363 (384)
...
T Consensus 246 ~~~ 248 (254)
T 2c1o_A 246 PIV 248 (254)
T ss_dssp CEE
T ss_pred cce
Confidence 333
No 108
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=176.13 Aligned_cols=164 Identities=22% Similarity=0.312 Sum_probs=138.3
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .+..|.|.+++.+|+|.|+|.+.+..+...+..+.|.
T Consensus 25 p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 99 (218)
T 3k0w_A 25 PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD 99 (218)
T ss_dssp CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEE
T ss_pred CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEE
Confidence 55677899999999999999888999999998766543 3568999999999999999999998776556667888
Q ss_pred EEec---------------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652 270 VEFA---------------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT 334 (384)
Q Consensus 270 v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (384)
|... |.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..
T Consensus 100 V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~--------------~~ 165 (218)
T 3k0w_A 100 VCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KK 165 (218)
T ss_dssp EECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC--------------SS
T ss_pred EEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC--------------CC
Confidence 8765 567777777788999999999999999999999999999886442 45
Q ss_pred eEEEeecCCCCCeEEEEEEEeCCcc-eEEEEEEEEeeee
Q psy16652 335 SLRVITIERRQFGQYACKAANKYGS-AQKEIELFDRETQ 372 (384)
Q Consensus 335 ~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~ 372 (384)
.|.|.+++.+|.|.|+|.|.|..|. .+..+.|.|.+..
T Consensus 166 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred EEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 7999999999999999999999887 5567888887753
No 109
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.93 E-value=6.7e-26 Score=192.24 Aligned_cols=241 Identities=15% Similarity=0.125 Sum_probs=159.6
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceee
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIK 84 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v 84 (384)
.+.|+.+..... .........+|.|.+++.+|+|.|.|.+.+........ ..+.....+..+...+....+
T Consensus 31 ~v~W~~~~~~~~---~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~------~~l~V~~~~~~~~~~~~~~~v 101 (292)
T 4dkd_C 31 SVEWDGPPSPHW---TLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA------IHLYVKDPARPWNVLAQEVVV 101 (292)
T ss_dssp CCCBCCCCCSSC---EECCBTTEEEEEESSCCGGGCSCEEECCCC----CCEE------ECCEECCSSCCEEESCSEEEE
T ss_pred ceEEccCCCCce---EEeccCceEEEEEcccccccCEEEEEEEccCCCCcceE------EEEEEcCccccccccCCeEEE
Confidence 488996643322 11223456799999999999999999987743221110 001111122223455667779
Q ss_pred eccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 85 DIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
.+|+++.|.|.+.+.. .+.+.|++++.... ....++.+.. ...|.|.+++.+|+|.|+|.+
T Consensus 102 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a 163 (292)
T 4dkd_C 102 FEDQDALLPCLLTDPVLEAGVSLVRVRGRPL-------------MRHTNYSFSP-----WHGFTIHRAKFIQSQDYQCSA 163 (292)
T ss_dssp ETTSCEECCEEESSGGGGSSEEEEEGGGCCC-------------CSSCCEECCS-----SSCCEETTCCGGGCSEEEEEE
T ss_pred cCCCcEEEeeeCCCCCcceeEEEEecCCCcc-------------ccCCcccccC-----CceEEECCCCHHHCeEEEEEE
Confidence 9999999999998732 26899999754321 1122222221 113999999999999999999
Q ss_pred EEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccccCce------eE
Q psy16652 164 IISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALSTGGS------IY 232 (384)
Q Consensus 164 ~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~------~~ 232 (384)
.+..+...+..+.|.|.. +|.+... +....+.+|+.+.|.|.+.+.|. +.+.|++++..+...... ..
T Consensus 164 ~n~~~~~~s~~~~l~V~~~~~~~p~i~~~-~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 242 (292)
T 4dkd_C 164 LMGGRKVMSISIRLKVQKVIPGPPALTLV-PAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ 242 (292)
T ss_dssp CSTTSCEECCCEEEEEECCCCSSCEEEEE-SSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEE
T ss_pred EeCCCceeEEEEEEEEeCCCCCCCeEEcc-CCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceee
Confidence 865554556678888886 5555432 33444579999999999987654 478899988765433221 22
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|....
T Consensus 243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~~ 283 (292)
T 4dkd_C 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVVESA 283 (292)
T ss_dssp EEEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC----
T ss_pred eEEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEeeCC
Confidence 34589999999999999999999998875 677777776554
No 110
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=184.96 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=152.3
Q ss_pred CCC-CCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc
Q psy16652 2 IAP-SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ 80 (384)
Q Consensus 2 ~~~-~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 80 (384)
|.+ .|.|++|+..+.. .+.+|.|.+++.+|+|.|.|.+.+....... .+.. ..+.+...+.
T Consensus 29 ~~~~~~~W~~~g~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~--------~l~v--~~~~~~~~~~ 90 (262)
T 3rjd_A 29 PGSSSTQWFLNGTATQT--------STPSYRITSASVNDSGEYRCQRGLSGRSDPI--------QLEI--HRGWLLLQVS 90 (262)
T ss_dssp CCTTCEEEEETTEECSC--------CSSEEEESSCCGGGCEEEEEEESSSCCCCCE--------EEEE--ECSSEEEEES
T ss_pred CCCceEEEEECCEEeec--------cCCeEEEecCCcccCeEEEEEEecCCccccE--------EEEE--eccceEecCC
Confidence 344 8999999766542 3678999999999999999998764322111 0011 1122444556
Q ss_pred ceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 81 EQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
...+.+|+.+.|.|.+ .+.+.+.+.|++++... . . ......|.|.+++.+|+|.|
T Consensus 91 ~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~-------~-------------~----~~~~~~l~i~~~~~~d~G~Y 146 (262)
T 3rjd_A 91 SRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAF-------K-------------F----FHWNSNLTILKTNISHNGTY 146 (262)
T ss_dssp CSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEE-------E-------------E----EEECCCEEESSCCGGGCEEE
T ss_pred CeEEecCCeEEEEEEccCCCCCceEEEEECCccc-------c-------------c----cCCCCeEEEEECChhhCEEE
Confidence 6678899999999999 56678899999966431 0 0 01123599999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCC-C----eEEEEeCCCcccccCcee
Q psy16652 160 KCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-P----TISWRRDNSAALSTGGSI 231 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~----~v~W~~~~~~~~~~~~~~ 231 (384)
+|.+.+.. +..+..+.|.|.. +|.+... ....+.+|+.+.|.|.+.+.|. + .+.|++++..+...
T Consensus 147 ~C~~~n~~-~~~~~~~~l~V~~~~~~p~~~~~--~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~---- 219 (262)
T 3rjd_A 147 HCSGMGKH-RYTSAGISVTVKELFPAPVLNAS--VTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR---- 219 (262)
T ss_dssp EEEEESSS-EEEEECEEEEEECSSCCCEEEES--SCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE----
T ss_pred EEEEeCCC-CccccceEEEeccCCCCCeEeec--CceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc----
Confidence 99998554 5566777888875 3333222 2345789999999999988765 4 37899988765422
Q ss_pred EeccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262 (384)
Q Consensus 232 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 262 (384)
.....|.|.++..+|+|.|+|.|.|..|...
T Consensus 220 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~ 250 (262)
T 3rjd_A 220 NTSSEYQILTARREDSGLYWCEAATEDGNVL 250 (262)
T ss_dssp ESCCEEEESSCCGGGCEEEEEEEEETTSSCE
T ss_pred CCCceEEEEEechhhCeEEEEEEEcccCceE
Confidence 2456899999999999999999999988753
No 111
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.93 E-value=3.6e-25 Score=176.87 Aligned_cols=163 Identities=15% Similarity=0.193 Sum_probs=126.8
Q ss_pred EEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
..+.+|+++.|.|.+.+.|.+. +.|++++..+... ...|.|.+++.+|+|.|+|.+.|.. .+..+.|.|.
T Consensus 17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------~~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~ 87 (204)
T 3sgj_C 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVH 87 (204)
T ss_dssp SEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------SSEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEE
T ss_pred eEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------ccEEEEecccccCCEEEEEEeCCCc---ccccEEEEEe
Confidence 5688999999999999877764 9999998766443 2789999999999999999998742 3556788888
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
.+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|+++|..+.... ....|.|.+++.+|+|.|+
T Consensus 88 ~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------------~~~~L~i~~v~~~D~G~Y~ 153 (204)
T 3sgj_C 88 IGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------------HNSDFYIPKATLKDSGSYF 153 (204)
T ss_dssp CSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE-------------ECCCEEESSCCGGGCEEEE
T ss_pred cCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc-------------CCceEEECcCCcccCEEEE
Confidence 8887655444 677889999999999765 557899999998763211 3568999999999999999
Q ss_pred EEEEe-CCcceEEEEEEEEeeeecCCccC
Q psy16652 351 CKAAN-KYGSAQKEIELFDRETQTGDETF 378 (384)
Q Consensus 351 C~a~n-~~g~~~~~~~l~v~~~~~~~~~~ 378 (384)
|.|.| ..+..+..+.|.|.++++.|...
T Consensus 154 C~a~n~~~~~~s~~~~l~V~~~~~~P~i~ 182 (204)
T 3sgj_C 154 CRGLVGSKNVSSETVQITITQGLAVSTIS 182 (204)
T ss_dssp EEEEETTEEEECCCEEEEEEC--------
T ss_pred EEEEeCCCceecCcEEEEEeCcCCCCccc
Confidence 99999 55566778899999887665443
No 112
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.93 E-value=9.5e-25 Score=176.00 Aligned_cols=190 Identities=22% Similarity=0.343 Sum_probs=140.8
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++... ...++............|.|.
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~---------------~~~~~~~~~~~~~~~~~L~i~ 68 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV---------------SNQRFEVIEFDDGSGSVLRIQ 68 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC---------------CCTTEEEEEEGGGTEEEEEEC
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCC---------------CCCceeEEEEcCCCceEEEEe
Confidence 45678888888999999999999999998888899999977542 122222222113345689999
Q ss_pred ec-CCCCCeeEEEEEEEccCcceeeeEEEEEecCC-------ccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCC
Q psy16652 150 EI-QETDAGIYKCEVIISLNNKVSAEVELIVRRPP-------IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN 221 (384)
Q Consensus 150 ~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~ 221 (384)
++ +.+|+|.|+|.+.+.. +..+..+.|.|..++ .+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++
T Consensus 69 ~v~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g 146 (212)
T 2yd6_A 69 PLRTPRDEAIYECVASNNV-GEISVSTRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAASGNPDPEITWFKDF 146 (212)
T ss_dssp SCCTTTTCEEEEEEEEETT-EEEEEEEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETT
T ss_pred ccCCCCCCeEEEEEEEcCC-CcEEEEEEEEEeccCccCCCcceee-cCCcceeEecCCCEEEEEEecCCCCCeEEEEECC
Confidence 99 5999999999998654 446667778886542 222 2234466889999999999999999999999998
Q ss_pred CcccccC---cee-E---eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 222 SAALSTG---GSI-Y---RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 222 ~~~~~~~---~~~-~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
..+.... ... . ....|.|.++..+|+|.|+|.|.|..|...+..+.|.+..+|.+
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~ 208 (212)
T 2yd6_A 147 LPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208 (212)
T ss_dssp EEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred ccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence 7765431 111 1 13689999999999999999999999988777888888777654
No 113
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.93 E-value=2.5e-24 Score=171.48 Aligned_cols=185 Identities=20% Similarity=0.283 Sum_probs=142.9
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.... ....++.+... ..+...|.|.+
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~-------------~~~~~~~~~~~-~~~~~~L~i~~ 68 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEII-------------ADGLKYRIQEF-KGGYHQLIIAS 68 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECC-------------CCSSSEEEEEE-TTTEEEEEECS
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECc-------------cCCCcEEEEEc-CCCEEEEEECc
Confidence 57888888889999999999999999988888999999775421 12234444332 34556899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc----CCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD----NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~----~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~ 226 (384)
++.+|+|.|+|.+.+.. +..+..+.|.|..+|.... ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..
T Consensus 69 ~~~~d~G~Y~C~~~n~~-g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~ 147 (197)
T 2j8h_A 69 VTDDDATVYQVRATNQG-GSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDN 147 (197)
T ss_dssp CCGGGCSEEEEEEEETT-EEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECS
T ss_pred CCHHhCEEEEEEEEECC-CceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeec
Confidence 99999999999998653 4456777788776554432 112456788999999999999999999999999987764
Q ss_pred cCceeE----eccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 227 TGGSIY----RGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 227 ~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
...... ....|.|.+ +..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 148 ~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~ 196 (197)
T 2j8h_A 148 NGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVA 196 (197)
T ss_dssp SSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred CCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE-eEEEEEEEe
Confidence 443322 235899999 99999999999999998875 667777664
No 114
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=9.2e-25 Score=176.09 Aligned_cols=183 Identities=20% Similarity=0.404 Sum_probs=139.1
Q ss_pred CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc------------cccCceeEeccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA------------LSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
.+....+.+|+.+.|.|.+.+.|.+.+.|++++..+ ....+.......|.|.+++.+|+|.|+|.+.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~ 86 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86 (212)
T ss_dssp SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEc
Confidence 356677899999999999998888899999988763 11233444568899999999999999999999
Q ss_pred CCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEE-EeccCCCeEEEEECCE-EecCCCceeeeee--eccCcc
Q psy16652 257 GVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECH-VEAYPPPAIVWIKDGV-QIMNNQHYSVSHF--ATSDEF 331 (384)
Q Consensus 257 ~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~-~~~~~~~~~~~~~--~~~~~~ 331 (384)
..+.. .+..+.|.|..+|.+...+....+.+|+.+.|.|. +.+.|.+.+.|++++. .+........... ......
T Consensus 87 ~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (212)
T 1f97_A 87 EGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 166 (212)
T ss_dssp TTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECT
T ss_pred cCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecC
Confidence 76632 36678888988887665555667889999999999 7999999999999998 7765433210000 000011
Q ss_pred ccceEEEeecCCCCCeEEEEEEEeCCcce--EEEEEEEEeee
Q psy16652 332 SDTSLRVITIERRQFGQYACKAANKYGSA--QKEIELFDRET 371 (384)
Q Consensus 332 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~ 371 (384)
....|.|.+++.+|.|.|+|.|.|..|.. +..+.|.|.+.
T Consensus 167 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~~ 208 (212)
T 1f97_A 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVEL 208 (212)
T ss_dssp TTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEESS
T ss_pred CCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEEe
Confidence 36789999999999999999999999998 55677777654
No 115
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=184.37 Aligned_cols=181 Identities=27% Similarity=0.358 Sum_probs=147.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee-E---ec--cEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-Y---RG--NILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~---~~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... . .+ ..|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus 11 p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~ 89 (305)
T 2nzi_A 11 LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-S 89 (305)
T ss_dssp CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEE-E
T ss_pred ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCc-c
Confidence 456778999999999999998999999999988766443221 1 12 289999999999999999999987764 7
Q ss_pred eEEEEEEEecCeEEecC-----CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEE
Q psy16652 264 RNIAVEVEFAPVITINR-----PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV 338 (384)
Q Consensus 264 ~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 338 (384)
..+.|.|..+|.+..+. ....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+... .....|.|
T Consensus 90 ~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i 164 (305)
T 2nzi_A 90 GTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-----RSFTSLVF 164 (305)
T ss_dssp EEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEEC-----SSEEEEEE
T ss_pred ceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEc-----CCceEEEE
Confidence 77888888887764322 345577899999999999999999999999998877766655421 13567999
Q ss_pred ee-cCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCc
Q psy16652 339 IT-IERRQFGQYACKAANKYGSAQKEIELFDRETQTGDE 376 (384)
Q Consensus 339 ~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~ 376 (384)
.+ ++.+|.|.|+|.|.|..|....++.|.|..+|.+|.
T Consensus 165 ~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~ 203 (305)
T 2nzi_A 165 PNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPR 203 (305)
T ss_dssp TTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCE
T ss_pred ecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCC
Confidence 99 999999999999999999999999999998876553
No 116
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.93 E-value=2.5e-25 Score=180.15 Aligned_cols=184 Identities=23% Similarity=0.459 Sum_probs=135.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc----eeEeccEE----EEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNIL----KIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~----~~~~~~~l----~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+..... ....+..+ .|.+++.+|+|.|+|.+.|..+..
T Consensus 16 p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~ 95 (217)
T 2vr9_A 16 PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95 (217)
T ss_dssp CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEE
T ss_pred CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCcc
Confidence 4567789999999999999988899999999877654321 11222223 578899999999999999987765
Q ss_pred eeeEEEEEEEe-cCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652 262 MKRNIAVEVEF-APVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 262 ~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 339 (384)
.+..+.+.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.....................|.|.
T Consensus 96 ~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 175 (217)
T 2vr9_A 96 VSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLIS 175 (217)
T ss_dssp ECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEES
T ss_pred ccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEe
Confidence 44556666665 4555555666778899999999999 899999999999999987433222111110011135689999
Q ss_pred ecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 340 TIERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+++.+|.|.|+|.|.|..|....+..+.+.....
T Consensus 176 ~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~~~ 209 (217)
T 2vr9_A 176 NVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209 (217)
T ss_dssp SCCSTTCEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred eCCHHHCeEEEEEEEcccceeccccEEEEEEeeh
Confidence 9999999999999999999998887666655543
No 117
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.93 E-value=1.1e-25 Score=193.17 Aligned_cols=248 Identities=15% Similarity=0.104 Sum_probs=150.3
Q ss_pred CCCCcchhccccCCCCCCCCCCCCceEEEEEeeecceEEEEEEEeeeccchh-HHHHHHHHHhhhhcccCCCCeeeeCcc
Q psy16652 3 APSPFDFVNRFQNTSTPWDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGP-SIIVALSFLISLASSQRTPTISYISQE 81 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~ 81 (384)
.+.|.|++|+...... ......+.+|.|.+++.+|+|.|.|.+....... .........+.......+|.+...+..
T Consensus 51 ~~~~~W~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~ 128 (316)
T 3vh8_G 51 FNNFMLYKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP 128 (316)
T ss_dssp CCSEEEEESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS
T ss_pred CceEEEEeCCCcccee--ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC
Confidence 4678999997664321 1112356789999999999999999876421100 000000000011122345666665554
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
. +.+|++++|.|.+. .+...+.|++++........ .. ..........|.|.+++.+|+|.|+|
T Consensus 129 ~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~-------------~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C 191 (316)
T 3vh8_G 129 L-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRL-------------VG--QIHDGVSKANFSIGPMMLALAGTYRC 191 (316)
T ss_dssp E-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEE-------------EC--EEETTEEEEEEEECSCCGGGCEEEEE
T ss_pred c-cCCCCeEEEEEcCC-CCCcEEEEEECCCcccccee-------------ee--eecCCCceEEEEECCCChhhCceEEE
Confidence 4 88999999999984 45668999998765311100 00 00012234579999999999999999
Q ss_pred EEEEccCc----ceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee---
Q psy16652 162 EVIISLNN----KVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI--- 231 (384)
Q Consensus 162 ~~~~~~~~----~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~--- 231 (384)
.+.+..+. ..+..+.|.|... |.+... + ...+.+|+.++|.|.+.. +.+.+.|++++..+.......
T Consensus 192 ~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~-~-~~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~ 268 (316)
T 3vh8_G 192 YGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQ-P-GPKVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKV 268 (316)
T ss_dssp EEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEE-S-CSCCCTTSCCEEEEEESS-CCSEEEEEETTSSCCEEEECEECT
T ss_pred EEecCCCCccccCCCCCEEEEecCCCCCCeEEeC-C-CCeecCCCcEEEEEECCC-CCcEEEEEECCCcCCCceeceecc
Confidence 99876543 1255677777642 333221 1 124688999999999974 678999999998765322111
Q ss_pred --EeccEEEEcCCCCCCCeEEEEEEEeCCCC----ceeeEEEEEEEecC
Q psy16652 232 --YRGNILKIPNITKTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAP 274 (384)
Q Consensus 232 --~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p 274 (384)
.....|.|.+++ |+|.|+|.+.|..+. ..+..+.|.|..+|
T Consensus 269 ~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~p 315 (316)
T 3vh8_G 269 NRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGNP 315 (316)
T ss_dssp TSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC------
T ss_pred CCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCCC
Confidence 122579999998 999999999996553 23666777776655
No 118
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.93 E-value=5.3e-24 Score=168.38 Aligned_cols=180 Identities=22% Similarity=0.347 Sum_probs=135.4
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+....+.+|++++|.|.+.+.+. .+.|++++... .....++.+.. ......|.|.+++.
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~-------------~~~~~~~~~~~--~~~~~~L~i~~~~~ 67 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEK-------------IISTQRVVVQK--EGVRSRLTIYNANI 67 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCB-------------CCCCSSEEEEE--ETTEEEEEECSCCG
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCc-------------cCCCceEEEEC--CCCeEEEEEccCCc
Confidence 4566677888999999999999988776 89999943321 12234555544 34456899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--Cc-e
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--GG-S 230 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--~~-~ 230 (384)
+|+|.|+|.+.+..+...+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .. .
T Consensus 68 ~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~ 146 (189)
T 2v44_A 68 EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA 146 (189)
T ss_dssp GGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESC-CCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEE
T ss_pred ccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeec-CCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEE
Confidence 99999999998766555577888888888766543 34467889999999999999999999999998876532 12 2
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEE
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEV 270 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v 270 (384)
...+..|.|.++..+|+|.|+|.|.|..+.. ....+.+.|
T Consensus 147 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v~V 187 (189)
T 2v44_A 147 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187 (189)
T ss_dssp ECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred EecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEEEE
Confidence 2345689999999999999999999987654 234444444
No 119
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.93 E-value=4.7e-25 Score=174.92 Aligned_cols=187 Identities=26% Similarity=0.457 Sum_probs=145.2
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... ....++.+..+ ...|.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~-------------~~~~~~~~~~~----~~~L~i~ 67 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK-------------LFDTRYSIREN----GQLLTIL 67 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECC-------------TTCTTEEEEGG----GTEEEES
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEcc-------------ccCccEEEcCC----ccEEEEc
Confidence 456778887888889999999999999888888999999765421 11344544432 2369999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+++.+|+|.|+|.+.+..+......+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (192)
T 2iep_A 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSR 146 (192)
T ss_dssp SCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEEC-CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSS
T ss_pred CCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccC-CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCc
Confidence 999999999999998766555666677777776665533 4456788999999999999999999999999887765443
Q ss_pred ee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 230 SI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 230 ~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
.. ..+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|
T Consensus 147 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 147 IAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 32 2455899999999999999999999988766677888887765
No 120
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.93 E-value=6e-24 Score=187.79 Aligned_cols=181 Identities=23% Similarity=0.427 Sum_probs=145.6
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeC--CCcccc-----cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRD--NSAALS-----TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~~-----~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
....+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.. ...... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 8 ~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 87 (389)
T 2jll_A 8 KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 87 (389)
T ss_dssp CCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred CceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence 345678899999999999999999999998 554432 112222 235899999999999999999999888
Q ss_pred CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652 260 RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 260 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 339 (384)
.. +..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+.......+..... .....|.|.
T Consensus 88 ~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~---~~~~~L~i~ 163 (389)
T 2jll_A 88 GH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST---GRKMILEIA 163 (389)
T ss_dssp EE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC---SSCEEEEEC
T ss_pred Cc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc---CCEEEEEEC
Confidence 75 78899999999988765554567889999999999999999999999999987654222221111 135679999
Q ss_pred ecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 340 TIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
+++.+|.|.|+|.|.|..|.....+.|.+..+|..|
T Consensus 164 ~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P 199 (389)
T 2jll_A 164 PTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSP 199 (389)
T ss_dssp CCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCC
T ss_pred CCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCC
Confidence 999999999999999999999999999887776554
No 121
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.93 E-value=2.4e-24 Score=176.07 Aligned_cols=187 Identities=21% Similarity=0.335 Sum_probs=141.7
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR 264 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 264 (384)
.....+.+|+++.|.|.+.+.|.+.+.|++++..+...... ......|.|.+++.+|+|.|+|.+.|..+.. ..
T Consensus 26 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~ 104 (231)
T 3ojm_B 26 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NH 104 (231)
T ss_dssp CSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EE
T ss_pred ceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-cc
Confidence 35677899999999999999888999999998776543321 1233489999999999999999999987764 56
Q ss_pred EEEEEEEec----CeEEe-cCCCcccccCCcEEEEEEEeccCCCeEEEEE----CCEEecCCCceeeeee--eccCcccc
Q psy16652 265 NIAVEVEFA----PVITI-NRPRQGQALQYDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHF--ATSDEFSD 333 (384)
Q Consensus 265 ~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (384)
.+.|.|... |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++ +|..+........... ........
T Consensus 105 ~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 184 (231)
T 3ojm_B 105 TYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNA 184 (231)
T ss_dssp EEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCT
T ss_pred cEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCc
Confidence 677777653 33222 2345667889999999999999999999999 8877755543322221 11122345
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
..|.|.+++.+|+|.|+|.|.|..|....++.|.|..+|..|..
T Consensus 185 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~ 228 (231)
T 3ojm_B 185 EVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR 228 (231)
T ss_dssp TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred cEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence 67999999999999999999999999999999999998876654
No 122
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=172.38 Aligned_cols=174 Identities=21% Similarity=0.341 Sum_probs=136.7
Q ss_pred CCCceEEeecCceEEEEEE-ecccCC-CeEEEEeCCCccccc--Ccee--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 188 NSTRSVIVSEGQTVYLYCY-ANGFPA-PTISWRRDNSAALST--GGSI--YRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 188 ~~~~~~~~~~g~~~~l~C~-~~~~~~-~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
..+....+.+|+.+.|.|. +.+.|. +.+.|++++..+... .... ..+..|.|.+++.+|+|.|+|.+.+..+..
T Consensus 13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~ 92 (201)
T 3s97_C 13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITK 92 (201)
T ss_dssp SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCc
Confidence 3456678999999999999 788888 899999998776422 1221 235689999999999999999999865543
Q ss_pred ee--eEEEEEEE-------ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccc
Q psy16652 262 MK--RNIAVEVE-------FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332 (384)
Q Consensus 262 ~~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (384)
.. ..+.+.+. .+|.+........+..|+.+.|.|.+.+.|.+.+.|++++..+....+.. ..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~---------~~ 163 (201)
T 3s97_C 93 SVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS---------TS 163 (201)
T ss_dssp EEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEE---------TT
T ss_pred chhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeec---------CC
Confidence 22 23333332 45666666667778899999999999999999999999998776443221 13
Q ss_pred cceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 333 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
...|.|.+++.+|.|.|+|.|.|..|....++.|.|++
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~a 201 (201)
T 3s97_C 164 GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201 (201)
T ss_dssp TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEeC
Confidence 67899999999999999999999999999999998863
No 123
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.93 E-value=6.1e-24 Score=169.20 Aligned_cols=185 Identities=17% Similarity=0.332 Sum_probs=143.7
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++... ....++.+.. .....+|.|.
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i~ 68 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKEL--------------IQSRKYKMSS--DGRTHTLTVM 68 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEE--------------CCCSSEEEEE--SSSEEEEEEE
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEEC--------------CCCccEEEEe--CCCEEEEEEe
Confidence 45678888888899999999999999988888899999976541 2334555554 4456689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccC--CCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN--STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
+++.+|+|.|+|.+.+.. +.....+.|.|..+|..... ......+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus 69 ~~~~~d~G~Y~C~~~n~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~ 147 (197)
T 3lcy_A 69 TEEQEDEGVYTCIATNEV-GEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNS 147 (197)
T ss_dssp CCSGGGCEEEEEEEECSS-CEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCC
T ss_pred cCCccCCEEEEEEEECCC-CceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCC
Confidence 999999999999998543 44566677777766554432 235567889999999999999999999999998877655
Q ss_pred CceeEec----cEEEEcCCCC-CCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 228 GGSIYRG----NILKIPNITK-TDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 228 ~~~~~~~----~~l~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
....... ..|.|.++.. +|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 148 ~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~ 196 (197)
T 3lcy_A 148 ENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQD 196 (197)
T ss_dssp SSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEEC
T ss_pred CceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEEEEEEEec
Confidence 4443322 5799999985 89999999999998875 6677777653
No 124
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.93 E-value=6.8e-26 Score=195.37 Aligned_cols=252 Identities=12% Similarity=0.132 Sum_probs=147.5
Q ss_pred CCCCCcchhccccCCCC-------CCCCCC---------CCceEEEEEeeecceEEEEEEEeeeccchhHHH-HHHHHHh
Q psy16652 2 IAPSPFDFVNRFQNTST-------PWDPST---------QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSII-VALSFLI 64 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~-------~~~~~~---------~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~-~~~~~~~ 64 (384)
|.+.+.||+++.+.... ...+.. ....+|.|.+++.+|+|.|.|.+.......... ..-...+
T Consensus 32 p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l 111 (327)
T 2wng_A 32 PVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTEL 111 (327)
T ss_dssp SCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEE
T ss_pred CCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEE
Confidence 56789999986442100 001111 567789999999999999999987752210000 0000001
Q ss_pred hhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142 (384)
Q Consensus 65 ~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (384)
.......+|.+. .....+.+|+.+.|.|.+.+.+++ .+.|++++............ ...+..|.+.
T Consensus 112 ~V~~~p~~p~i~--~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~----~~~~~~~~~~------ 179 (327)
T 2wng_A 112 SVRAKPSAPVVS--GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP----VGESVSYSIH------ 179 (327)
T ss_dssp EEEBCCCCCEEE--CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEEC----SSCCSCEEEE------
T ss_pred EEEecCCCceee--ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccccccccc----ccCCCceEEE------
Confidence 111233344444 234568899999999999886543 89999987543211100000 0011223322
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCcc--eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEeccc-CCC-eEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNNK--VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TIS 216 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~ 216 (384)
..|.|.....+|.|.|+|.+.+..+.. ......+ .+..+|.+..... .+.+|+.+.|.|.+.+. |++ .+.
T Consensus 180 -s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~---~~~~G~~v~l~C~~~g~~p~~~~v~ 255 (327)
T 2wng_A 180 -STAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ---PVRAENQVNVTCQVRKFYPQRLQLT 255 (327)
T ss_dssp -EEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEE---CCSSTTCCEEEEEEEEEBSSCEEEE
T ss_pred -EEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecC---CcCCCCcEEEEEEEccccCCCcEEE
Confidence 258888777788899999998765432 2223333 2344554432211 16789999999999884 444 899
Q ss_pred EEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 217 WRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 217 W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
|++++..+.... +.......|.|..+..+|+|.|+|.|.|..+...++.+.+.
T Consensus 256 W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~~ 317 (327)
T 2wng_A 256 WLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDLK 317 (327)
T ss_dssp EEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEECC
T ss_pred EEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEEE
Confidence 999988764321 11112246889999999999999999999887656555443
No 125
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.93 E-value=7.5e-25 Score=176.64 Aligned_cols=177 Identities=25% Similarity=0.433 Sum_probs=134.4
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc------eeEecc-----EEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG------SIYRGN-----ILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~------~~~~~~-----~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ....+. .|.|.+++.+|+|.|+|.+.|..
T Consensus 16 p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~ 95 (212)
T 2v9r_A 16 PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL 95 (212)
T ss_dssp CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETT
T ss_pred CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCC
Confidence 4567789999999999999888899999999876643321 111222 24445678999999999999987
Q ss_pred CCceeeEEEEEEEec-CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 259 GRGMKRNIAVEVEFA-PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 259 ~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
+...+..+.|.|... +.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+......... ....|
T Consensus 96 g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~--------~~~~L 167 (212)
T 2v9r_A 96 GEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--------RGGKL 167 (212)
T ss_dssp EEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE--------ETTEE
T ss_pred CceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc--------cCCeE
Confidence 665455667777653 344445556678899999999999 89999999999999998765432221 35689
Q ss_pred EEeecCCCCCeEEEEEEEeCCcceEEE-EEEEEeeeecC
Q psy16652 337 RVITIERRQFGQYACKAANKYGSAQKE-IELFDRETQTG 374 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~~~~ 374 (384)
.|.+++.+|.|.|+|.|.|..|...+. +.|.|..+|..
T Consensus 168 ~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~ 206 (212)
T 2v9r_A 168 MITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSF 206 (212)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred EEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchH
Confidence 999999999999999999999987664 89999877643
No 126
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=5e-24 Score=171.80 Aligned_cols=172 Identities=18% Similarity=0.267 Sum_probs=135.0
Q ss_pred eecCceEEEEEEeccc-CCCeEEEEeCCCcccccCceeEe--c--cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 195 VSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYR--G--NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
...++.+.|.|.+.+. |.+.+.|++++..+......... + ..|.|.+++.+|+|.|+|.+.|..+.. ...+.+.
T Consensus 14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~ 92 (212)
T 2r15_A 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS 92 (212)
T ss_dssp EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEE
Confidence 4568889999999875 47799999999877655443322 2 359999999999999999999976654 4455554
Q ss_pred EEe--------------------cCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeecc
Q psy16652 270 VEF--------------------APVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS 328 (384)
Q Consensus 270 v~~--------------------~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~ 328 (384)
+.. .|.+ ...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+....
T Consensus 93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~-- 170 (212)
T 2r15_A 93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA-- 170 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET--
T ss_pred EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC--
Confidence 432 3333 33444567889999999999999999999999999999887776655321
Q ss_pred CccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 329 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
.....|.|.+++.+|.|.|+|.|.|..|....++.|.|..|
T Consensus 171 --~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 171 --GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp --TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred --CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 12468999999999999999999999999999999988743
No 127
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.92 E-value=7.6e-25 Score=181.77 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=125.1
Q ss_pred eecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEe
Q psy16652 35 VTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKM 109 (384)
Q Consensus 35 ~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~ 109 (384)
++.+|+|.|.|.+..... ....+.. ..++.+...+....+.+|++++|.|.+.+.+ .+.+.|+++
T Consensus 11 v~~~dsg~Y~C~a~g~~~---~~~~~~~-------~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 80 (254)
T 2c1o_A 11 VRPGTSVKLSCKASGYSF---TNYWMNW-------LRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ 80 (254)
T ss_dssp -------------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred ecCCccEEEEEcCchhhh---hhhhhhe-------eeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence 789999999999882211 1111111 1256777778888999999999999998876 379999996
Q ss_pred CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccc
Q psy16652 110 DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIIS 186 (384)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~ 186 (384)
+.......+.............|+.+.. .....+|.|.+++.+|+|.|+|.+.+...........+.|.. +|.+.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~ 158 (254)
T 2c1o_A 81 RPGQSPKRLIYLVSKLDSGDPDRFTGSG--SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVS 158 (254)
T ss_dssp CTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEE
T ss_pred CCCCCceEEEEeccccCCCccceEEEec--CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeE
Confidence 6432111111111100111235776655 456678999999999999999999755433333445666653 33333
Q ss_pred cCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCccccc-----------CceeEeccEEEEcCCCCCCCeEEEEE
Q psy16652 187 DNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALST-----------GGSIYRGNILKIPNITKTDRGTYYCV 253 (384)
Q Consensus 187 ~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~ 253 (384)
...+. .....|+.+.|.|.+.+ .|+ +.+.|++++..+... ++.......|.|.++..+|+|.|+|.
T Consensus 159 ~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~ 237 (254)
T 2c1o_A 159 IFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCE 237 (254)
T ss_dssp EECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEE
T ss_pred eecCC-hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEE
Confidence 21111 11235789999999987 444 469999999876543 11112345799999999999999999
Q ss_pred EEeCCCC
Q psy16652 254 AQNGVGR 260 (384)
Q Consensus 254 ~~~~~~~ 260 (384)
|.|....
T Consensus 238 a~n~~~~ 244 (254)
T 2c1o_A 238 ATHKTST 244 (254)
T ss_dssp EECTTCS
T ss_pred EEcCCCC
Confidence 9997554
No 128
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.92 E-value=9.2e-25 Score=176.11 Aligned_cols=202 Identities=23% Similarity=0.292 Sum_probs=141.4
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++........ ....+.....+.......|.|
T Consensus 6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~i 76 (212)
T 2v9r_A 6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKD---------DPRSHRMLLPSGSLFFLRIVH 76 (212)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTT---------CTTCSEEECTTSCEEESSCCC
T ss_pred ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeecccc---------ccccceEEecCCcEEEEEEEe
Confidence 45578888888889999999999999998888889999997754221100 000000011100101113556
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~ 227 (384)
.+++..|+|.|+|.+.+..+...+..+.|.|...+......+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 77 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~ 156 (212)
T 2v9r_A 77 GRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDK 156 (212)
T ss_dssp CSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTT
T ss_pred cCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCC
Confidence 77899999999999987655444566777776543333333556778999999999998 88899999999998877654
Q ss_pred C-ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEec
Q psy16652 228 G-GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN 279 (384)
Q Consensus 228 ~-~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~ 279 (384)
. .....+..|.|.++..+|+|.|+|.+.|..|...+..+.|.|..+|.+...
T Consensus 157 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~ 209 (212)
T 2v9r_A 157 DERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209 (212)
T ss_dssp STTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred cceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence 3 334567799999999999999999999988876555689999999887653
No 129
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.92 E-value=4.1e-24 Score=169.76 Aligned_cols=183 Identities=22% Similarity=0.308 Sum_probs=138.0
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++...... ...++.+.. ..+...|.|.+
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~------------~~~~~~~~~--~~~~~~L~i~~ 69 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS------------TLPGVQISF--SDGRAKLTIPA 69 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTT------------TSTTCEEEE--ETTEEEEEESS
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccc------------cCCceEEEe--CCCEEEEEECC
Confidence 4677888888889999999999999988888899999977653111 012333333 34457899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
++.+|+|.|+|.+.+.. +.....+.|.|.. +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...
T Consensus 70 ~~~~d~G~Y~C~~~n~~-~~~~~~~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~ 147 (194)
T 2a38_A 70 VTKANSGRYSLKATNGS-GQATSTAELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSS 147 (194)
T ss_dssp CCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCS
T ss_pred CCcccCEEEEEEEEcCC-ceEeEEEEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCC
Confidence 99999999999998654 3455566677763 34333 2244567899999999999999999999999999877654
Q ss_pred CceeEe--c--cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 228 GGSIYR--G--NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 228 ~~~~~~--~--~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
...... + ..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 148 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 193 (194)
T 2a38_A 148 LDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRA-TSTAELLV 193 (194)
T ss_dssp SSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred CcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCce-EEEEEEEE
Confidence 443322 2 279999999999999999999988874 55666665
No 130
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.92 E-value=6.2e-24 Score=168.30 Aligned_cols=174 Identities=20% Similarity=0.340 Sum_probs=136.1
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEE-eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMK-MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
++.+...+....+.+|++++|.|.+.+.+ .+.+.|++ ++.... ....++.+... ......|.|.
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~-------------~~~~~~~~~~~-~~~~~~L~i~ 67 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------------PNQQRISVVWN-DDDSSTLTIY 67 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------------CBSSSEEEEEE-ETTEEEEEEC
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc-------------CCCCeEEEEEC-CCCceEEEEc
Confidence 46788888899999999999999998865 78999999 443210 12344444332 2456789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+++.+|+|.|+|.+.+..++..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 68 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~ 146 (191)
T 1epf_A 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNA-PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146 (191)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEEC-CSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCC
T ss_pred cCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecC-CCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCC
Confidence 999999999999999776667778888888888776543 4456788999999999999999999999999887654322
Q ss_pred ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
....+..|.|.++..+|+|.|+|.|.|..+.
T Consensus 147 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~ 180 (191)
T 1epf_A 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180 (191)
T ss_dssp TTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred ceEEEecCCeEEECCCChhhCEEEEEEEEEecce
Confidence 1223458999999999999999999997744
No 131
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=184.66 Aligned_cols=241 Identities=14% Similarity=0.101 Sum_probs=152.3
Q ss_pred CcchhccccCCCCC-CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcc-cCCCCeeeeCcc--
Q psy16652 6 PFDFVNRFQNTSTP-WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASS-QRTPTISYISQE-- 81 (384)
Q Consensus 6 ~~w~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~-- 81 (384)
+.|++|+.+..... .........+|.|.+++.+|+|.|.|.+.+..+..... ...+.+... ...|.+...+..
T Consensus 28 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~---~~~~~v~v~~p~~~~~~~~~~~~~ 104 (289)
T 3mjg_X 28 VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDE---RKRLYIFVPDPTVGFLPNDAEELF 104 (289)
T ss_dssp CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CC---CEEEEEECCCTTCCBCCCCHHHHE
T ss_pred EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCc---EEeEEEEEECCCcCcccCCCCcce
Confidence 89999986652111 01111225799999999999999999988743210000 000000011 112222221121
Q ss_pred eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEE
Q psy16652 82 QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 161 (384)
..+.+|+++.|.|.+. .|.+.+.|++.+.... +. ..+ .. .. .+. ...|+|.|+|
T Consensus 105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~---~~-----------~~~--~~--~~---~~~----~~~d~G~Y~C 158 (289)
T 3mjg_X 105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVA---LP-----------VPY--DH--QR---GFS----GIFEDRSYIC 158 (289)
T ss_dssp EEESSCCCEEECCCBS-CTTSCEEEEESSCCSC---CC-----------CCE--ET--TT---EEE----ECCCSSEEEE
T ss_pred EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCc---cc-----------eee--cC--Cc---Cee----eeccCcEEEE
Confidence 5588999999999998 5667899999763210 00 000 00 00 011 3579999999
Q ss_pred EEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---------
Q psy16652 162 EVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS--------- 230 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--------- 230 (384)
.+.+..+...+..+.|.|.. +|.+... +....+.+|+++.|.|.+.+.|.+.+.|++++.........
T Consensus 159 ~a~n~~~~~~s~~~~l~v~~~~~p~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~ 237 (289)
T 3mjg_X 159 KTTIGDREVDSDAYYVYRLQVSSINVSVN-AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP 237 (289)
T ss_dssp EEEETTEEEECCCEEEEECCCCCCCCEEE-ESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTT
T ss_pred EEEeCCceeeeeeEEEEecCCCCCCcEEe-CCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcc
Confidence 99876666666666777765 3433322 23356889999999999999999999999876543221111
Q ss_pred eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE
Q psy16652 231 IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277 (384)
Q Consensus 231 ~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 277 (384)
......|.|.+++.+|+|.|+|.|.|..|.. +....|.|...|...
T Consensus 238 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~~~~~ 283 (289)
T 3mjg_X 238 YHIRSILHIPSAELEDSGTYTCNVTESVNDH-QDEKAINITVVESGH 283 (289)
T ss_dssp TEEEEEEEESSCCSSCCEEEEEEEEETTTTE-EEEEEEEEEEEC---
T ss_pred eEEEEEEEEcccChhhCcEEEEEeecCCCCc-eeEEEEEEEEEecCc
Confidence 1234689999999999999999999999986 778888888777543
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.92 E-value=5.6e-26 Score=197.28 Aligned_cols=207 Identities=18% Similarity=0.227 Sum_probs=153.8
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc--eeE
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIY 232 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~ 232 (384)
|.|.|+|...+ ....+.+.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ...
T Consensus 136 ~~~~~~C~~~~-----~l~~l~~~~c~~P~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~ 209 (347)
T 2ifg_A 136 PEQKLQCHGQG-----PLAHMPNASCGVPTLKV-QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGL 209 (347)
T ss_dssp GGGCCCCSSSS-----CSSCCCCTTCCCCEEEE-ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCS
T ss_pred cccCCCCCCCh-----HHhcCCcccCCCCceec-cCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceec
Confidence 56899997643 11111112222343332 23445688999999999999999999999998876443221 223
Q ss_pred eccEEEEcCCCCCCCe-EEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652 233 RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG 311 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 311 (384)
....|.|.+++.+|+| .|+|.+.|..|.. +..+.|.|..+|.+ ....+..|+.+.|.|.+.|.|.|.+.|+++|
T Consensus 210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g 284 (347)
T 2ifg_A 210 PSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG 284 (347)
T ss_dssp SEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETT
T ss_pred ccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCC
Confidence 4568999999999999 9999999987775 67788888888886 1223467899999999999999999999999
Q ss_pred EEecCCCceeeeeee--ccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 312 VQIMNNQHYSVSHFA--TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 312 ~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
..+............ .......++|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 285 SVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 999865543332211 1112235679999999999999999999999999999999987764
No 133
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.92 E-value=2e-26 Score=199.75 Aligned_cols=235 Identities=17% Similarity=0.248 Sum_probs=158.2
Q ss_pred CCCCCcchhccccCCCCC--CCCCCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe--ee
Q psy16652 2 IAPSPFDFVNRFQNTSTP--WDPSTQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI--SY 77 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~ 77 (384)
|.+.+.|++|+.+..... ..+....+.+|.|.+++.+|+|.|.|.+.+.......... +... ..+.. ..
T Consensus 53 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~------l~V~-~~~~~~~~~ 125 (339)
T 3o4o_C 53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIE------LRVF-ENTDAFLPF 125 (339)
T ss_dssp SCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEEEEEEE------EEEE-CSCGGGHHH
T ss_pred CCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceEEEEEE------EEEE-cCCCccccc
Confidence 567899999986643221 1223345678999999999999999998875321111000 0001 11111 11
Q ss_pred eCcceeeeccCcEEEEEE-----eecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 78 ISQEQIKDIAQTADLKCS-----VQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
......+.+|+.+.|.|. ..+.+.+.+.|++++..... ...++.+.. +...|.|.+++
T Consensus 126 ~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~-------------~~~~~~~~~----~~~~L~i~~v~ 188 (339)
T 3o4o_C 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK-------------DNEKFLSVR----GTTHLLVHDVA 188 (339)
T ss_dssp HCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT-------------TCSSEEECT----TSSEEEESSCC
T ss_pred cccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC-------------CCceeEEcC----CcceEEEcccC
Confidence 122346789999999999 66778889999997764211 112333322 22379999999
Q ss_pred CCCCeeEEEEEEEccCc---ceeeeEEEEEecC-----CccccCCCceEEeecCceEEEEEEe---cccC-CCeEEEEeC
Q psy16652 153 ETDAGIYKCEVIISLNN---KVSAEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYA---NGFP-APTISWRRD 220 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~-~~~v~W~~~ 220 (384)
.+|+|.|+|.+.+..++ ..+..+.|.|... |.+. ..+....+.+|+.+.|.|.+ .+.| .+.+.|+++
T Consensus 189 ~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~-~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~ 267 (339)
T 3o4o_C 189 LEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267 (339)
T ss_dssp GGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEEC-CCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESS
T ss_pred HhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEe-cCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEEC
Confidence 99999999999876554 3466777877643 3333 22455568899999999999 8888 779999998
Q ss_pred CCcccccC---------cee-Eecc------EEEEcCCCCCCC-eEEEEEEEeCCCCc
Q psy16652 221 NSAALSTG---------GSI-YRGN------ILKIPNITKTDR-GTYYCVAQNGVGRG 261 (384)
Q Consensus 221 ~~~~~~~~---------~~~-~~~~------~l~i~~~~~~d~-G~Y~C~~~~~~~~~ 261 (384)
+..+.... ... ...+ .|.|.++..+|+ |.|+|.|.|..|..
T Consensus 268 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~ 325 (339)
T 3o4o_C 268 DTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ 325 (339)
T ss_dssp SSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEE
T ss_pred CeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCce
Confidence 87653211 110 1111 799999999997 99999999988865
No 134
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.92 E-value=1.1e-24 Score=181.98 Aligned_cols=218 Identities=16% Similarity=0.193 Sum_probs=151.8
Q ss_pred CCcchhccccCCCCCCCCCCCCceEEEEEee---ecceEEE--EEEEeeeccchhHHHHHHHHHhhhhcc-cCCCCeeee
Q psy16652 5 SPFDFVNRFQNTSTPWDPSTQKPIRFFIHEV---TGEKVTS--VILLFKMSVAGPSIIVALSFLISLASS-QRTPTISYI 78 (384)
Q Consensus 5 ~~~w~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--y~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~ 78 (384)
.+.|++|+.++.. .....+..|.|..+ +.+|+|. |.|.+.+........ ..+... ..+|.+.
T Consensus 37 ~v~W~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~------~~l~V~~~p~p~~~-- 104 (265)
T 2oz4_A 37 QVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL------QTVTIYSFPAPNVI-- 104 (265)
T ss_dssp EEEEEETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE------EEEEEECCCCCEEE--
T ss_pred EEEEEeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE------EEEEEeCCCCceee--
Confidence 8999999876653 22334457777776 7788874 999998753321110 000111 1124444
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
+....+.+|+.++|.|.+. +.+.+.| ++.... .......|.|..+..+|.|.
T Consensus 105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~------------------------~~~~~~~l~i~~~~~~~~g~ 156 (265)
T 2oz4_A 105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQ------------------------PLGPRAQLLLKATPEDNGRS 156 (265)
T ss_dssp ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSS------------------------CCSSEECCEEECCGGGTTEE
T ss_pred cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEcc------------------------CCCCcEEEEEccccccCCce
Confidence 3456688999999999988 7789999 444310 01123458899999999999
Q ss_pred EEEEEEEccCccee---eeEEEEEecCCccccCC-CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652 159 YKCEVIISLNNKVS---AEVELIVRRPPIISDNS-TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234 (384)
Q Consensus 159 Y~C~~~~~~~~~~~---~~~~l~v~~~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 234 (384)
|+|.+.+...+... ..+.|.|..+|...... +....+.+|+.+.|.|.+.|.|.+.+.|++++......
T Consensus 157 Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~------- 229 (265)
T 2oz4_A 157 FSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------- 229 (265)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-------
T ss_pred EEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCC-------
Confidence 99999866644433 66778888777654332 44667899999999999999999999999998732221
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
..+. .++.+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 230 g~~~--~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~ 264 (265)
T 2oz4_A 230 GESV--TVTRDLEGTYLCRARSTQGEV-TREVTVNVLS 264 (265)
T ss_dssp TSCE--ECCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred CcEE--EeehhhCeEEEEEEECCCCcE-EEEEEEEEec
Confidence 2222 378899999999999988875 6778888765
No 135
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.92 E-value=3.5e-23 Score=163.82 Aligned_cols=175 Identities=26% Similarity=0.421 Sum_probs=131.0
Q ss_pred CCCCeeeeCcceeeec-cCcEEEEEEeecCCC--ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 71 RTPTISYISQEQIKDI-AQTADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
.+|.|.. +....+.+ |+++.|.|.+.+.+. +.+.|++++..... .+. ......|.
T Consensus 2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~---------------~~~------~~~~~~L~ 59 (190)
T 2wv3_A 2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA---------------TRK------NASNMEYR 59 (190)
T ss_dssp -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTT---------------CCB------CCSEEEEE
T ss_pred CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcc---------------cce------EeccEEEE
Confidence 4677766 44455556 999999999988765 78999997754211 110 11346899
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEe--CCCccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR--DNSAAL 225 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~--~~~~~~ 225 (384)
|.+++.+|+|.|+|.+.+. +..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.
T Consensus 60 i~~~~~~d~G~Y~C~~~n~--~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~ 136 (190)
T 2wv3_A 60 INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGH-KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE 136 (190)
T ss_dssp ESSCCGGGCEEEEEEEEET--TEEEEEEEEEEECCCEEEEE-CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE
T ss_pred EecCCcccCEEEEEEEEeC--CcccccEEEEEecCCccccc-CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee
Confidence 9999999999999999876 66777888999888876643 455678999999999999999999999999 444332
Q ss_pred ---ccCceeEe----ccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 226 ---STGGSIYR----GNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 226 ---~~~~~~~~----~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
........ ...|.|.++. .+|+|.|+|.|.|..|.. ...+.|.|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~ 189 (190)
T 2wv3_A 137 ISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVR 189 (190)
T ss_dssp CCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred eecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcc-eeEEEEEEE
Confidence 11122211 1379999999 799999999999998875 666666664
No 136
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=2.9e-23 Score=163.37 Aligned_cols=166 Identities=20% Similarity=0.318 Sum_probs=129.0
Q ss_pred EEeecCceEEEEEEecccCCC--eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
..+.+|+.+.|.|.+.+.+.+ .+.|++++..+...... .....|.|. +.+|+|.|+|.+.|. ....+.|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V 80 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQL 80 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEE
Confidence 457899999999999876666 89999988766543221 123356665 689999999999982 245678889
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccC-CCeEEEEE---CCEE-ecCC--CceeeeeeeccCccccceEEEeecC-
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYP-PPAIVWIK---DGVQ-IMNN--QHYSVSHFATSDEFSDTSLRVITIE- 342 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~- 342 (384)
..+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|++ ++.. +... .++.+.. . .....|.|.+++
T Consensus 81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~v~~ 155 (184)
T 3b5h_A 81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S---QGRSELHIENLNM 155 (184)
T ss_dssp CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E---TTEEEEEECSCCT
T ss_pred ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--c---CCeeEEEEeeccc
Confidence 9999988877777788999999999999999 78999999 4544 3322 3444332 1 134589999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 343 RRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
.+|.|.|+|.|.|..|....++.|.|.+
T Consensus 156 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 156 EADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp TTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cccCceEEEEEEeCCCcceEEEEEEEec
Confidence 8999999999999999999999998864
No 137
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.91 E-value=1.7e-23 Score=167.22 Aligned_cols=176 Identities=15% Similarity=0.235 Sum_probs=126.9
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
|.+.. +....+.+|+.+.|.|.... .|.+.+.|++++.. +..+.++.+..+...+...|.|.++
T Consensus 4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~--------------l~~~~~~~~~~~~~~g~~~L~I~~v 68 (207)
T 3rbs_A 4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--------------IFEGPKYKMHIDRNTGIIEMFMEKL 68 (207)
T ss_dssp --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEE--------------ECSSSSCEEEECTTTCEEEEEESCC
T ss_pred Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEE--------------CccCCCEEEEEeCCCCEEEEEECCC
Confidence 44443 33567899999999999864 68889999998865 2334566666544456778999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEe---------------------cCCccccCCCceEEeecCceEEEEEEeccc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVR---------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGF 210 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 210 (384)
+.+|+|.|+|.+.| +.......+.+. .+|.+... ....+.+|+.+.|.|.+.|.
T Consensus 69 ~~~D~G~Y~C~a~N---g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~--~~~~v~~g~~v~l~C~v~g~ 143 (207)
T 3rbs_A 69 QDEDEGTYTFQLQD---GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY--LSWEVTGECNVLLKCKVANI 143 (207)
T ss_dssp CGGGCEEEEEEEEE---TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE--EEEEEETTTEEEEEEEEESC
T ss_pred ChhhCEEEEEEEEC---CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEec--CCcEEcCCCcEEEEEEEeCC
Confidence 99999999999986 333333333221 12322211 13568899999999999998
Q ss_pred -CCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 211 -PAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 211 -~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus 144 ~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~ 204 (207)
T 3rbs_A 144 KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLV 204 (207)
T ss_dssp CTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEC
T ss_pred CCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEE-EEEEEEe
Confidence 8999999999987765433222 23469999999999999999999998875 4555554
No 138
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.91 E-value=1.2e-24 Score=174.92 Aligned_cols=180 Identities=21% Similarity=0.395 Sum_probs=136.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc------------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL------------STGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...+.......|.|.+++.+|+|.|+|.+.+.
T Consensus 11 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 90 (209)
T 1nbq_A 11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90 (209)
T ss_dssp CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecC
Confidence 455668899999999999988888999999886621 12233344578999999999999999999997
Q ss_pred CCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeee--ccCcccc
Q psy16652 258 VGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFA--TSDEFSD 333 (384)
Q Consensus 258 ~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~ 333 (384)
.+.. .+..+.|.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|++++..+............ .......
T Consensus 91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (209)
T 1nbq_A 91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTT 170 (209)
T ss_dssp TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTT
T ss_pred CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCc
Confidence 6532 356778888888877665666678899999999997 89999999999999888655432110000 0001135
Q ss_pred ceEEEeecCCCCCeEEEEEEEeCCcceE--EEEEEEEe
Q psy16652 334 TSLRVITIERRQFGQYACKAANKYGSAQ--KEIELFDR 369 (384)
Q Consensus 334 ~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~ 369 (384)
..|.|.+++.+|.|.|+|.|.|..|... ..+.|.|.
T Consensus 171 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 171 GELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp CCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred ceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 7899999999999999999999999984 44555543
No 139
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.91 E-value=2.5e-23 Score=167.21 Aligned_cols=171 Identities=19% Similarity=0.293 Sum_probs=130.7
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccC-------------------c-eeEeccEEEEcCCCCCCCeEEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG-------------------G-SIYRGNILKIPNITKTDRGTYYC 252 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~-------------------~-~~~~~~~l~i~~~~~~d~G~Y~C 252 (384)
..+.+|+++.|.|...+.+.+.+.|++++....... + ....+..|.|.+++.+|+|.|+|
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C 88 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL 88 (208)
T ss_dssp SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence 457899999999998887888999998754322110 0 11123479999999999999999
Q ss_pred EEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccC
Q psy16652 253 VAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329 (384)
Q Consensus 253 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 329 (384)
.+.+..+......+.|.|..+ |.+...... +..|+.+.|.|.+.+.| +.+.|+++|..+....++.+..
T Consensus 89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~----- 160 (208)
T 3r4d_A 89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ----- 160 (208)
T ss_dssp EEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEET-----
T ss_pred EEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcC-----
Confidence 999976544567777888765 555544433 88899999999999966 7999999999998777665542
Q ss_pred ccccceEEEeecCCCCCeEEEEEEEeCCcceEE-EEEEEEeeeec
Q psy16652 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQK-EIELFDRETQT 373 (384)
Q Consensus 330 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~~~ 373 (384)
...+|.|.+++.+|.|.|+|.|.|..|+..+ .++|.|..++.
T Consensus 161 --~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 161 --NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp --TTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred --CCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 3478999999999999999999999998764 47777776654
No 140
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.91 E-value=5.6e-24 Score=172.17 Aligned_cols=190 Identities=22% Similarity=0.353 Sum_probs=136.1
Q ss_pred cccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 68 SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 68 ~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
....+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++...... ......+..........|.
T Consensus 5 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~------------~~~~~~~~~~~~~~~~~l~ 72 (217)
T 2vr9_A 5 GQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTN------------EKKSHRVQFKDGALFFYRT 72 (217)
T ss_dssp -CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCS------------SSSSSEEECTTSCEEESSC
T ss_pred cccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCC------------CccceeEEecCCceEEEEE
Confidence 4567889999999999999999999999988888899999977542111 0001111111122223357
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEec-CCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR-PPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL 225 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~ 225 (384)
|.+++.+|+|.|+|.+.+..+...+..+.|.|.. ++.+. ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 73 i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 73 MQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR-VEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD 151 (217)
T ss_dssp CBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCS-BCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred eccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcE-ECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence 8899999999999999876554445556666654 33332 33456778999999999999 889999999999987665
Q ss_pred cc--------Cc-eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 226 ST--------GG-SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 226 ~~--------~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
.. .. ....+..|.|.+++.+|+|.|+|.|.|..|...+....|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 152 DLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp CCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred cccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 21 11 12245689999999999999999999998876444444443
No 141
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=170.16 Aligned_cols=177 Identities=21% Similarity=0.310 Sum_probs=137.4
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
....+.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.... ......|.|
T Consensus 15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~-------------------------~~~~~~L~i 69 (218)
T 3k0w_A 15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP-------------------------NGNTSELIF 69 (218)
T ss_dssp ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECT-------------------------TCCSSEEEE
T ss_pred cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECC-------------------------CCCCCEEEE
Confidence 4567789999999999999999999999888888999999765421 112247999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC---------------ccccCCCceEEeecCceEEEEEEecccCCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP---------------IISDNSTRSVIVSEGQTVYLYCYANGFPAP 213 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~---------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~ 213 (384)
.+++.+|+|.|+|.+.+..+...+..+.|.|...+ .+. ..+....+.+|+.+.|.|.+.+.|.+
T Consensus 70 ~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~v~~G~~v~L~C~~~g~p~~ 148 (218)
T 3k0w_A 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC-VEPTSQKLMPGSTLVLQCVAVGSPIP 148 (218)
T ss_dssp TTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEE-ECCCCEEECTTCCEEEECEEEBSSCC
T ss_pred ccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEE-ECCCceeecCCCcEEEEEEecccCCC
Confidence 99999999999999987655555677888887653 222 22445678899999999999999999
Q ss_pred eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 214 TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 214 ~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...+.+
T Consensus 149 ~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~~ 206 (218)
T 3k0w_A 149 HYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206 (218)
T ss_dssp EEEEEETTEECTTC-----CSSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC----
T ss_pred eEEEEECCEECCCC-----CCCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCccC
Confidence 99999998776543 34579999999999999999999988876677888888765443
No 142
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.91 E-value=4.6e-24 Score=172.22 Aligned_cols=174 Identities=21% Similarity=0.303 Sum_probs=131.3
Q ss_pred CceEEeecCceEEEEEEecccC----CCeEEEEeCCCc----------------ccc-----cCceeE-------eccEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP----APTISWRRDNSA----------------ALS-----TGGSIY-------RGNIL 237 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~----------------~~~-----~~~~~~-------~~~~l 237 (384)
+....+.+|+++.|.|.+.+.+ .+.+.|++.+.. ... ..+... ....|
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L 86 (214)
T 3jz7_A 7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI 86 (214)
T ss_dssp EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence 4556789999999999998765 468999984321 110 111111 23579
Q ss_pred EEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecC
Q psy16652 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMN 316 (384)
Q Consensus 238 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~ 316 (384)
.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++.....
T Consensus 87 ~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 87 NVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred EEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 999999999999999999987754 77788999888876554444557889999999999 8999999999995432221
Q ss_pred CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
..... .......|.|.+++.+|+|.|+|.|.|..|....++.|.|..|
T Consensus 166 ~~~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 166 PTPWL-------AEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp CGGGG-------GGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred Cccce-------eccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence 11111 1113568999999999999999999999999999999998743
No 143
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.91 E-value=9.2e-24 Score=170.21 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=126.9
Q ss_pred CceEEeecC--ceEEEEEEecccCCCeEEEEeC---CCcccccCcee-EeccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEG--QTVYLYCYANGFPAPTISWRRD---NSAALSTGGSI-YRGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g--~~~~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+..+.+.+| +++.|.|.+.+ |.+.+.|++. +..+....... .....|.|.+++.+|+|.|+|.+.|..+...+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s 92 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 92 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence 356788999 99999999977 6789999885 43333322222 23468999999999999999999985444334
Q ss_pred eEEEEEEEe--cCeEEecCCCc-ccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCc-eeeeeeecc--Cccccce
Q psy16652 264 RNIAVEVEF--APVITINRPRQ-GQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQH-YSVSHFATS--DEFSDTS 335 (384)
Q Consensus 264 ~~~~l~v~~--~p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~ 335 (384)
..+.|.|.. +|.+...+... .+.+|+.++|.|.+.|.|. +.+.|+++|..+..... ......... .....++
T Consensus 93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (213)
T 2x1w_L 93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 172 (213)
T ss_dssp CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEE
T ss_pred EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEE
Confidence 446666643 34454544443 7899999999999998654 47999999876432211 000000000 0123457
Q ss_pred EEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 336 LRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 336 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|.+++.+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 173 L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p 209 (213)
T 2x1w_L 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP 209 (213)
T ss_dssp EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred EEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence 9999999999999999999999999999999998765
No 144
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.91 E-value=4.9e-24 Score=169.40 Aligned_cols=177 Identities=16% Similarity=0.299 Sum_probs=121.2
Q ss_pred ceeeeccCcEEEEEEe---ecCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEEEEEeecCC
Q psy16652 81 EQIKDIAQTADLKCSV---QYADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+.+..|++++|.|.. .+.|.+.|.|+|++........ ......... ...++.+.. ..+...|.|.+++.
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~I~~v~~ 78 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLI-GRMHHDVIFIEWPFRGFFDIHR--SANTFFLVVTAANI 78 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEE-EEEETTEEEECGGGBTTEEEEE--ETTEEEEEESSCCG
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEE-EecCCceEEeeccccceEEEEE--cCCEEEEEEccCCH
Confidence 4568999999999964 4567889999998765321111 111111111 223444444 45677899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc----Cc
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST----GG 229 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~----~~ 229 (384)
+|+|.|+|.+.|. .+..+..+.|.|..||.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .+
T Consensus 79 ~D~G~Y~C~a~n~-~g~~~~~~~l~V~~p~~~~~-~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r 156 (203)
T 4fa8_A 79 SHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLSV-HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 156 (203)
T ss_dssp GGCEEEEEEEEET-TEEEEEEEEEEEEEEEEEEE-EEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------C
T ss_pred HHCeEEEEEEEcC-CCcEEEEEEEEecCCceeee-cceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccce
Confidence 9999999999864 45567778888887766543 244556789999999999999999999999876544321 11
Q ss_pred e-eEecc---EEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652 230 S-IYRGN---ILKIPNITKTDRGTYYCVAQNGVGRGM 262 (384)
Q Consensus 230 ~-~~~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 262 (384)
. ...++ .+.+.+++.+|+|.|+|.|.|..|...
T Consensus 157 ~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~ 193 (203)
T 4fa8_A 157 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 193 (203)
T ss_dssp CEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred EEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence 1 12233 345568999999999999999998763
No 145
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.91 E-value=3.3e-23 Score=163.79 Aligned_cols=182 Identities=26% Similarity=0.451 Sum_probs=135.3
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+|.+...+.+..+.+|+++.|.|.+.+.+.+.+.|++++..... ....++.+..+ ..|.|.++
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~~~~~~~~~~-----~~L~i~~~ 64 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT------------ISDNRFAMLAN-----NNLQILNI 64 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CB------------CCCTTEEECTT-----SCEEETTC
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcccee------------ccCCeEEEecC-----CCEEEeeC
Confidence 56778888888999999999999998888889999998764210 12344444332 25999999
Q ss_pred CCCCCeeEEEEEEEccCcc-eeeeEEEEEecCCccccCCCc-eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 152 QETDAGIYKCEVIISLNNK-VSAEVELIVRRPPIISDNSTR-SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+.+|+|.|+|.+.+...+. ....+.+.+..+|.+...... ...+.+|+.+.|.|.+.+.|.+.+.|++++..+.....
T Consensus 65 ~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~ 144 (189)
T 2v5t_A 65 NKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEK 144 (189)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSS
T ss_pred CHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCc
Confidence 9999999999998766443 345566777766655433222 45678899999999999889999999999987765544
Q ss_pred eeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 230 SIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 230 ~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
.... +..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus 145 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 187 (189)
T 2v5t_A 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVF 187 (189)
T ss_dssp EEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred EEEecCCCEEEEcCCChhhCeeEEEEEEeCCCce-eEEEEEEEE
Confidence 3332 4589999999999999999999988875 556666654
No 146
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.91 E-value=1.1e-23 Score=169.36 Aligned_cols=192 Identities=19% Similarity=0.234 Sum_probs=136.1
Q ss_pred eeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccc-eeccCceeee----CCceEEeeCCCCceEEEEEee
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLP-ISMSGSLIIH----DSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+.+.+..+.+|++++|.|...+.+...+.|++++.......+. +......... .+|+.+.. +.+|.|.+
T Consensus 3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-----~~~L~i~~ 77 (208)
T 3r4d_A 3 TIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-----NGSLLFQM 77 (208)
T ss_dssp EEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-----TSCEEECS
T ss_pred cccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-----CCeEEEcc
Confidence 44556677899999999999777778899999876533222211 1111111111 23444432 23699999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc---cccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI---ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
++.+|+|.|+|.+.+...+.....+.|.|..++. +... ... +.+|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus 78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~ 153 (208)
T 3r4d_A 78 ITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT-NTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT 153 (208)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEES-CSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred ccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecC-Cce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence 9999999999999876556677778888876532 2221 122 78999999999998865 799999998877655
Q ss_pred CceeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 228 GGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 228 ~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
...... +..|.|.++..+|+|.|+|.|.|..|...+..+.|.|..+|..
T Consensus 154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204 (208)
T ss_dssp SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence 443332 3689999999999999999999999998888899888877654
No 147
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.91 E-value=1.8e-23 Score=166.67 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=124.8
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
...+.+|+.+.|.|.+.|.|.+.+.|++....... ..... ....|.|.+++.+|+|.|+|.+.|..+.. +..+.|.
T Consensus 10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~ 87 (202)
T 1vca_A 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVE 87 (202)
T ss_dssp EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEE
T ss_pred cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEE
Confidence 34456999999999999999999999984322111 11111 23469999999999999999999987654 6788899
Q ss_pred EEecCeE-EecCCCcccccCCcEEEEEEEeccCC---CeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 270 VEFAPVI-TINRPRQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 270 v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
|..+|.. .+.+. ..+.+|+.++|.|.+.+.++ ++|.|++++..+....... .............|.|.....+|
T Consensus 88 V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~-~~~~~~~~~~~~~l~i~~~~~d~ 165 (202)
T 1vca_A 88 IYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLE-DADRKSLETKSLEVTFTPVIEDI 165 (202)
T ss_dssp EEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCS-CCSSCCCEEEEEEEEECCCGGGT
T ss_pred EEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccccc-ccCcCcceEEEEEEEEEeeeccC
Confidence 9887643 22223 66889999999999988543 3799999998875321100 00000001123456788888889
Q ss_pred CeEEEEEEEeCCcc-------eEEEEEEEEeeee
Q psy16652 346 FGQYACKAANKYGS-------AQKEIELFDRETQ 372 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~-------~~~~~~l~v~~~~ 372 (384)
.|.|+|.|.|..|. .+.++.|.|.-+|
T Consensus 166 ~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P 199 (202)
T 1vca_A 166 GKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP 199 (202)
T ss_dssp TCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred CCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence 99999999999886 3567777777655
No 148
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.91 E-value=1.2e-23 Score=169.83 Aligned_cols=195 Identities=17% Similarity=0.262 Sum_probs=136.6
Q ss_pred eeeCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCC-c-ccceeccCcee-----eeCCceEEee-CCCCce
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKM-E-PLPISMSGSLI-----IHDSRFQLTT-DPETST 143 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~-~-~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~ 143 (384)
..++..+.+.+|++++|.|.+.+.+ .+.+.|++.+..... . .+.....+... ...+|+.+.. +...+.
T Consensus 4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 83 (214)
T 3jz7_A 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD 83 (214)
T ss_dssp --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTB
T ss_pred ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCc
Confidence 3445667789999999999998765 469999997654311 1 12222222211 1245666644 223456
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCC
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS 222 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~ 222 (384)
.+|.|.+++.+|+|.|+|.+.+.. +..+..+.|.|..+|..... .....+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus 84 ~~L~i~~v~~~D~G~Y~C~~~~~~-~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~ 161 (214)
T 3jz7_A 84 ASINVTNLQLSDIGTYQCKVKKAP-GVANKKFLLTVLVKPSGTRC-FVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD 161 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCBSCEE-EEESCCBTTCCEEEEEECSBCCSSCEEEEEECST
T ss_pred ccEEEccCChhhCeEEEEEEEeCC-CccccEEEEEEEcCCCCcee-eeecceecCCcEEEEecCCCCCCCCEEEEEECCC
Confidence 789999999999999999998653 44577788999887765432 222237889999999999 789999999999644
Q ss_pred c--ccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec
Q psy16652 223 A--ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA 273 (384)
Q Consensus 223 ~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 273 (384)
. +.........+..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+
T Consensus 162 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~P 213 (214)
T 3jz7_A 162 SQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVVPP 213 (214)
T ss_dssp TCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCBCC
T ss_pred CCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEeCC
Confidence 3 22222222345689999999999999999999998876 66777776643
No 149
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.91 E-value=1.8e-23 Score=166.95 Aligned_cols=171 Identities=15% Similarity=0.241 Sum_probs=130.3
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
..+|.+...+....+.+|++++|.|.+.+.+.+ .+.|++++.... .....|.|
T Consensus 5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~--------------------------~~~~~L~i 58 (204)
T 3sgj_C 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS--------------------------SQASSYFI 58 (204)
T ss_dssp -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEES--------------------------CCSSEEEE
T ss_pred CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcc--------------------------cCccEEEE
Confidence 456788888888889999999999999887654 499999765310 00147999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CCCeEEEEeCCCccccc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALST 227 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~ 227 (384)
.+++.+|+|.|+|.+.+ ...+..+.|.|..++.+... ....+.+|+.+.|.|.+.+. |.+.+.|++++..+..
T Consensus 59 ~~v~~~D~G~Y~C~a~n---~~~s~~~~l~V~~~p~~~~~--~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~- 132 (204)
T 3sgj_C 59 DAATVDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY- 132 (204)
T ss_dssp SSCCGGGCEEEEEEETT---SBCCCCEEEEEECSSEEEEC--SCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE-
T ss_pred ecccccCCEEEEEEeCC---CcccccEEEEEecCceEecC--CceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec-
Confidence 99999999999999863 34566778888877655433 22567899999999999654 5679999999876532
Q ss_pred CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 275 (384)
...+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus 133 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 133 ---FHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp ---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred ---ccCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 234668999999999999999999996554457778888876553
No 150
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.91 E-value=1.7e-23 Score=163.13 Aligned_cols=169 Identities=16% Similarity=0.256 Sum_probs=129.5
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCcc-EEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
...+|.+...+....+.+|++++|.|.+.+.+.+. +.|++++... . .....|.
T Consensus 4 ~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~---------------~-----------~~~~~L~ 57 (175)
T 1fnl_A 4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI---------------S-----------SQASSYF 57 (175)
T ss_dssp CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEE---------------E-----------SSCSEEE
T ss_pred CCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEc---------------c-----------CCceEEE
Confidence 34678888888888999999999999998866544 8899976431 0 1233799
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCC-CeEEEEeCCCcccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAALS 226 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~ 226 (384)
|.+++.+|+|.|+|.+.+ ...+..+.|.|..++..... ....+.+|+.+.|.|.+.+.++ +.+.|++++..+..
T Consensus 58 i~~~~~~d~G~Y~C~~~n---~~~s~~~~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~ 132 (175)
T 1fnl_A 58 IDAATVNDSGEYRCQTNL---STLSDPVQLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY 132 (175)
T ss_dssp ESSCCGGGCEEEEEECSS---SCCCCCEEEEEECSSEEEEC--SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE
T ss_pred EeCCCcccCEEEEEEeeC---CcccccEEEEEeCCCceeeC--CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC
Confidence 999999999999999864 23356677877755443322 3355789999999999987655 49999999876532
Q ss_pred cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
...+..|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..
T Consensus 133 ----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 133 ----FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp ----EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ----CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 235678999999999999999999997665556677777754
No 151
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.91 E-value=1.6e-23 Score=163.31 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=125.1
Q ss_pred ceEEeecCceEEEEEEecccCCCe-EEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
....+.+|+++.|.|.+.+.|.+. +.|++++..+.. ....|.|.+++.+|+|.|+|.+.|..+ +..+.|.
T Consensus 15 ~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~ 85 (175)
T 1fnl_A 15 QWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLE 85 (175)
T ss_dssp CCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEE
T ss_pred CceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEE
Confidence 334688999999999998887765 889998876542 356899999999999999999998543 4557777
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 348 (384)
|..++.... .+...+.+|+.+.|.|.+.+.|++ .+.|+++|..+... .....|.|.+++.+|+|.
T Consensus 86 V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-------------~~~~~L~i~~v~~~d~G~ 151 (175)
T 1fnl_A 86 VHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-------------HHNSDFHIPKATLKDSGS 151 (175)
T ss_dssp EECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-------------EECCCEEESSCCGGGCEE
T ss_pred EeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-------------CCCCEEEEcccChhhCeE
Confidence 776665443 344667899999999999987665 99999999887321 136789999999999999
Q ss_pred EEEEEEeCCcc-eEEEEEEEEeee
Q psy16652 349 YACKAANKYGS-AQKEIELFDRET 371 (384)
Q Consensus 349 Y~C~a~n~~g~-~~~~~~l~v~~~ 371 (384)
|+|.|.|..|. .+..+.|.|.++
T Consensus 152 Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (175)
T 1fnl_A 152 YFCRGLVGSKNVSSETVNITITQA 175 (175)
T ss_dssp EEEEEEETTEEEECCCEEEEEECC
T ss_pred EEEEEEcCCCCccCccEEEEEeCC
Confidence 99999997664 455677877653
No 152
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.91 E-value=4.1e-23 Score=165.11 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=123.6
Q ss_pred CceEEeecCceEEEEEEecccCC-----CeEEEEeCCCccc-ccCceeE-------eccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPA-----PTISWRRDNSAAL-STGGSIY-------RGNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~-~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
+....+.+|+++.|.|.+.+.|. +.+.|++.+.... ...+... ....|.|.+++.+|+|.|+|.+.+
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 88 (202)
T 3bp6_B 9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC 88 (202)
T ss_dssp CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence 44577899999999999988775 7899999433322 2222221 225899999999999999999999
Q ss_pred CCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 257 GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 257 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
..+.. +..+.|.|..++..... ....+..|+.+.|.|.+.|+|.|.+.|++++..+... .... .......+
T Consensus 89 ~~~~~-~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~------~~~~-~~~~~~~~ 159 (202)
T 3bp6_B 89 GAAWD-YKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS------HIRT-PEGLYQVT 159 (202)
T ss_dssp TTEEE-EEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEE------EEEC-TTSCEEEE
T ss_pred CCCcc-eEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCc------eeeC-CCCCEEEE
Confidence 87754 67788888765421110 0123467999999999999999999999987654211 0011 11123456
Q ss_pred EEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 337 RVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.+..++.+|.|.|+|.|.|..|....++.|.|.++.
T Consensus 160 ~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~~ 195 (202)
T 3bp6_B 160 SVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195 (202)
T ss_dssp EEEEECCCTTCCEEEEEEETTTTEEEEEEECC----
T ss_pred EEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCcC
Confidence 788899999999999999999999999999887664
No 153
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=5.7e-23 Score=165.53 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=137.4
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.... ...............++.+.. ..|.|.+++
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~------~~L~i~~v~ 73 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTT--ALVCYNSQITAPYADRVTFSS------SGITFSSVT 73 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEE--EEEEETTEECGGGTTTEEEET------TEEEESCCC
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCcee--eEEecCCcccccccCcEEeec------eeEEEcccC
Confidence 356666777889999999999999988888999999886520 000000000011234444433 479999999
Q ss_pred CCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEE-ecccCCCeEEEEeCCC-cccccCc
Q psy16652 153 ETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNS-AALSTGG 229 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~W~~~~~-~~~~~~~ 229 (384)
.+|+|.|+|.+.+..+. ..+..+.|.|..+|..... .....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....
T Consensus 74 ~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~ 152 (212)
T 1f97_A 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI-SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAK 152 (212)
T ss_dssp GGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEE-ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC----
T ss_pred cccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCccc-CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccccc
Confidence 99999999999876542 4466788888877765433 22345789999999999 6889999999999998 6654322
Q ss_pred e---------e--EeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEe
Q psy16652 230 S---------I--YRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEF 272 (384)
Q Consensus 230 ~---------~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~ 272 (384)
. . .....|.|.++..+|+|.|+|.|.|..|.. .+..+.|.|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 153 KTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp -CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred ccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 1 1 135689999999999999999999998876 45566666653
No 154
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.90 E-value=1.7e-23 Score=163.42 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=124.9
Q ss_pred CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+....+.+|+++.|.|.+.+.+.+ .+.|++++..+.. .+..|.|.+++.+|+|.|+|.+.+..+ +..+.|
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l 81 (176)
T 1f2q_A 11 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYL 81 (176)
T ss_dssp SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEE
T ss_pred CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc---cccEEE
Confidence 344568999999999999887775 6999998876543 356899999999999999999987543 445677
Q ss_pred EEEecCeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCe
Q psy16652 269 EVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347 (384)
Q Consensus 269 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 347 (384)
.|..++.+.. .+...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... ....|.|.+++.+|+|
T Consensus 82 ~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~~L~i~~v~~~d~G 147 (176)
T 1f2q_A 82 EVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSG 147 (176)
T ss_dssp EEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------------CSSEEEESSCCGGGCE
T ss_pred EEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------------CCCeEEECCCCcccCE
Confidence 7775555443 3445678999999999995 56667999999998884322 3678999999999999
Q ss_pred EEEEEEEeCCcc-eEEEEEEEEeeeec
Q psy16652 348 QYACKAANKYGS-AQKEIELFDRETQT 373 (384)
Q Consensus 348 ~Y~C~a~n~~g~-~~~~~~l~v~~~~~ 373 (384)
.|+|.|.|..+. .+..+.|.|..+|.
T Consensus 148 ~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 148 TYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp EEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred EEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999997544 45568888887764
No 155
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.90 E-value=1.3e-23 Score=174.90 Aligned_cols=264 Identities=11% Similarity=0.077 Sum_probs=113.9
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+.+.|+...|.+|+++.|+|.+.-..+..+.|...-... . ..........+.|.+++.+
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~------------------~---~~~~g~~~~~~~l~~v~~~ 60 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK------------------E---LLLPGNNRKVYELSNVQED 60 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC------------------C---CCCSCSSEEEEEEESCCSC
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc------------------c---cccCCCceEEEEEEecccC
Confidence 445677788999999999999864444458886421110 0 0000122235788888743
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI 231 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~ 231 (384)
|.|+|++. ..+...+..+.|.|..+|...........+.+|+.++|.|.+.+ .|.. .|+|++++..+.......
T Consensus 61 --~~y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~ 137 (291)
T 1mq8_A 61 --SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG 137 (291)
T ss_dssp --CCCEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCB
T ss_pred --CeEEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCC
Confidence 57999995 44456777888999988866654444445889999999999966 4544 589999997664332110
Q ss_pred -EeccEEEEcCCCCCCCeEEEEEEEeCCCC-------ceeeEEEEEEEecCeEEec-CCCcccccCCcEEEEEEEeccCC
Q psy16652 232 -YRGNILKIPNITKTDRGTYYCVAQNGVGR-------GMKRNIAVEVEFAPVITIN-RPRQGQALQYDAILECHVEAYPP 302 (384)
Q Consensus 232 -~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-------~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~ 302 (384)
....+|.+...+.+|.+.|+|.|.+..+. ..+....|.|.++|..... .....+.+|+.++|.|.+.|.|+
T Consensus 138 ~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P 217 (291)
T 1mq8_A 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP 217 (291)
T ss_dssp TTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC---------------------------------
T ss_pred CCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCC
Confidence 12245777667777777999999986542 1255678888887632111 11225778999999999999765
Q ss_pred C---eEEEEECCEEecCCCceeeeeeeccCccccceEEEeec---CCCC--CeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 303 P---AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI---ERRQ--FGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 303 ~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d--~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+ .+.|+++|+.+...... ....+++... ..++ .+.|+|.|.|...+.++...|.|...|+
T Consensus 218 ~~~~~v~w~~~g~~l~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~ 285 (291)
T 1mq8_A 218 VSEAQVHLALGDQRLNPTVTY-----------GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285 (291)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CcccEEEEEECCEecCceeee-----------cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence 5 59999999988643211 1222332222 3333 5678899998776677888888887654
No 156
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.90 E-value=4.6e-23 Score=162.21 Aligned_cols=160 Identities=18% Similarity=0.215 Sum_probs=125.9
Q ss_pred ceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc--------------CceeEe-------ccEEEEcCCCCCCCeE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST--------------GGSIYR-------GNILKIPNITKTDRGT 249 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~--------------~~~~~~-------~~~l~i~~~~~~d~G~ 249 (384)
..+.+.+|+++.|.|.+.+.|.+.+.|++++...... .+.... ...|.|.+++.+|+|.
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 3467899999999999988888999999987632110 011111 3359999999999999
Q ss_pred EEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccC
Q psy16652 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329 (384)
Q Consensus 250 Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 329 (384)
|+|.+.+..+ .+.|.|.. +.. ++...+.+|+.++|.|.+.+.|.+.+.|++++..+.
T Consensus 83 Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------------- 139 (184)
T 2ny1_B 83 YICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI-------------- 139 (184)
T ss_dssp EEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEE--------------
T ss_pred EEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccc--------------
Confidence 9999987532 45566653 222 444577899999999999999999999999875541
Q ss_pred ccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG 374 (384)
Q Consensus 330 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 374 (384)
.....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.+.|..
T Consensus 140 -~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~ 183 (184)
T 2ny1_B 140 -QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 183 (184)
T ss_dssp -EESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred -cCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence 14678999999999999999999999999999999999988754
No 157
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.90 E-value=4.3e-23 Score=164.05 Aligned_cols=169 Identities=15% Similarity=0.212 Sum_probs=125.3
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCcee---EeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVE 269 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~ 269 (384)
.+.+|++++|.|.+.+ +.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|..+ ...+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 3p2t_A 15 VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEE
T ss_pred cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEE
Confidence 6889999999999988 678999999988764322111 2346899999999999999999999876 2335667777
Q ss_pred EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
|.. +|.+...+. ..+.+|+.++|.|.+.+ +++.+.|+++|..+.......... .......|.|.+++.+|+
T Consensus 94 V~~~~~~p~~~~~~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~ 167 (196)
T 3p2t_A 94 MTGAYSKPTLSALPS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHG----AQQHQAEFPMSPVTSVHG 167 (196)
T ss_dssp EECSSCCCEEEEESC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEE----EEEEEEEEEECSCCGGGC
T ss_pred ecCCCCCCEEEeCCc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccccc----ccCcceEEEeCCCcccCC
Confidence 764 456655444 36789999999999988 456899999998765433211111 011356799999999999
Q ss_pred eEEEEEEEeCCc-----ceEEEEEEEEe
Q psy16652 347 GQYACKAANKYG-----SAQKEIELFDR 369 (384)
Q Consensus 347 G~Y~C~a~n~~g-----~~~~~~~l~v~ 369 (384)
|.|+|.|.|..+ ..+..+.|.|.
T Consensus 168 G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 168 GTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp EEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred CeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 999999999986 23445666664
No 158
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.90 E-value=2.4e-23 Score=167.93 Aligned_cols=184 Identities=18% Similarity=0.221 Sum_probs=128.7
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.+..++ ...+.+|++|+|.|.+.+.+.+.+.|++.........+............+|+.+.. .....+|.|.+++
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 78 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN--SGNMATLTISKAQ 78 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEESSCC
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe--cCCEEEEEECCCC
Confidence 3455556 778999999999999998888899999965432222222211111112346777665 5567889999999
Q ss_pred CCCCeeEEEEEEEccC--cceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcc
Q psy16652 153 ETDAGIYKCEVIISLN--NKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAA 224 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~ 224 (384)
.+|+|.|+|.+.+..+ ......+.|.|. .+|.+.... ....+.+|+.+.|.|.+.+. |+ +.+.|++++..+
T Consensus 79 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 157 (213)
T 3mj8_L 79 AGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFP-PSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI 157 (213)
T ss_dssp GGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred hhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccC-CCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence 9999999999987665 245666788887 344333221 12223479999999999874 44 499999998876
Q ss_pred ccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 225 LST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 225 ~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
... .........|.|..+..+|+|.|+|.|.|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 158 TQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred CCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 532 122223456999999999999999999997643
No 159
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.90 E-value=1.1e-22 Score=170.14 Aligned_cols=210 Identities=19% Similarity=0.283 Sum_probs=131.2
Q ss_pred CCeeeeCcceeeeccCcEEEEEEee---cCCCccEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCCCCceEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQ---YADDYPVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDPETSTYI 145 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 145 (384)
+.+...+..+.+.+|++++|.|.+. +.+.+.+.|++.+.........+........ ..+|+.+..+....+.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4566667778899999999999987 4566789999977654333222222211111 23556555444556678
Q ss_pred EEEeecCCCCCeeEEEEEEEccCc-ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe---cccCCCeEEEEeCC
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA---NGFPAPTISWRRDN 221 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~v~W~~~~ 221 (384)
|.|.+++.+|+|.|+|.+.+.... .....+.|.|.. ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~------~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~ 159 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP------EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC------CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEEC
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec------cCCCccccccCCcEEEEEEecCCCCCCccceEEEecC
Confidence 999999999999999999875433 244556666641 22456778999999999999 66788999999954
Q ss_pred CcccccC----------------------ce------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE-Ee
Q psy16652 222 SAALSTG----------------------GS------IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EF 272 (384)
Q Consensus 222 ~~~~~~~----------------------~~------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v-~~ 272 (384)
....... .. ......|.|.+++.+|+|.|+|.|.|..+.. +..+.|.| ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~ 238 (268)
T 3mj6_A 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHVVQD 238 (268)
T ss_dssp TTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECC
T ss_pred CCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE-EEEEEEEEEcC
Confidence 3211100 00 0234589999999999999999999977754 67778877 44
Q ss_pred cCeEEecCCCcccccCC
Q psy16652 273 APVITINRPRQGQALQY 289 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~ 289 (384)
+|.+...+....+.+++
T Consensus 239 ~p~~~~~p~~~~~~~~q 255 (268)
T 3mj6_A 239 EFQRTISPTPPTDKGQQ 255 (268)
T ss_dssp -----------------
T ss_pred CCeeeeCCCCCCCCcce
Confidence 55555555554444443
No 160
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.90 E-value=1.8e-23 Score=163.27 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=128.6
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
.+|.+...+....+.+|++++|.|.+.+.+. ..+.|++++.... .....|.|.
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~--------------------------~~~~~L~i~ 56 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE--------------------------ETNSSLNIV 56 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECS--------------------------CCSSEEEEC
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECC--------------------------CCceEEEEe
Confidence 5678888888889999999999999987665 4799999765311 123479999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec-ccCCCeEEEEeCCCcccccC
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTG 228 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~ 228 (384)
+++.+|+|.|+|.+.+ ...+..+.|.|..++.... .....+.+|+.+.|.|.+. +.|.+.+.|++++..+...
T Consensus 57 ~v~~~d~G~Y~C~~~~---~~~s~~~~l~V~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (176)
T 1f2q_A 57 NAKFEDSGEYKCQHQQ---VNESEPVYLEVFSDWLLLQ--ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW- 130 (176)
T ss_dssp SCCGGGCEEEEEECTT---SSCCCCEEEEEECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC-
T ss_pred ccceecCEEEEEEcCC---ccccccEEEEEeCcceeec--CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee-
Confidence 9999999999999863 2235567777775444332 2234678999999999994 5666799999988766322
Q ss_pred ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 275 (384)
..+..|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 131 ---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp ---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred ---cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 24568999999999999999999997555556778888888774
No 161
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.90 E-value=7.5e-23 Score=165.02 Aligned_cols=177 Identities=21% Similarity=0.316 Sum_probs=125.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeEe----ccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIYR----GNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~~----~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.|.+.+.|++++..... ..+.... ...|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence 4567789999999999999988889999985431110 0111111 238999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeee--
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSH-- 324 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~-- 324 (384)
|.+.+..+........|.|.. +|.+...++......|+.+.|.|.+.| .|.+ .+.|+++|..+..........
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 167 (213)
T 3d9a_L 88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD 167 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCC
T ss_pred EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCcc
Confidence 999987665433445666664 777777565555568899999999987 6665 899999999887551111111
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
...+.....+.|.|.+++.+|.|.|+|.|.|..........+
T Consensus 168 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 168 SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp TTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred CCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 111111124589999999999999999999998775444444
No 162
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.90 E-value=8.1e-23 Score=164.83 Aligned_cols=175 Identities=19% Similarity=0.329 Sum_probs=129.2
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCcee----EeccEEEEcCCCCCCCeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSI----YRGNILKIPNITKTDRGTYYCV 253 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~ 253 (384)
...+.+|+++.|.|.+.+.+.+.+.|++.. .... ...+.. .....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (213)
T 3mj8_L 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ 88 (213)
T ss_dssp EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence 677899999999999998888999999832 1111 001111 1234799999999999999999
Q ss_pred EEeCCCC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeeeee
Q psy16652 254 AQNGVGR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVSHF 325 (384)
Q Consensus 254 ~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~~~ 325 (384)
+.+..+. .....+.|.|. .+|.+...+....+..|+.++|.|.+.+. |+ +.+.|+++|..+...........
T Consensus 89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 168 (213)
T 3mj8_L 89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK 168 (213)
T ss_dssp EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence 9998772 33556778887 77888777766666789999999999985 44 39999999999865422111111
Q ss_pred eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 326 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
..+.....+.|.|..+..+|.|.|+|.|.|..+...+++.+
T Consensus 169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~ 209 (213)
T 3mj8_L 169 SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP 209 (213)
T ss_dssp ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence 11112234569999999999999999999999887777643
No 163
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.90 E-value=8.5e-23 Score=160.52 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=115.9
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEe
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEF 272 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~ 272 (384)
.+.+|+++.|.|.+.+ +.+.+.|++++.. ....+..|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..
T Consensus 18 ~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 90 (184)
T 2gi7_A 18 LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG 90 (184)
T ss_dssp EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEES
T ss_pred cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecC
Confidence 6889999999999987 7789999998875 2335678999999999999999999997653 224556777743
Q ss_pred ---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 273 ---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 273 ---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
+|.+...+ ...+.+|+.++|.|.+.+. ++.+.|+++|..+...... ......|.|.+++.+|+|.|
T Consensus 91 ~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~---------~~~~~~L~i~~v~~~D~G~Y 159 (184)
T 2gi7_A 91 VFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPE---------RWYRASFPIITVTAAHSGTY 159 (184)
T ss_dssp SSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCC---------EEEEESSSEEEETTCCSEEE
T ss_pred cCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecC---------CCceEEEEEccCCccCCeEE
Confidence 56666554 4567899999999998765 4699999999877542211 11356789999999999999
Q ss_pred EEEEEeCCc
Q psy16652 350 ACKAANKYG 358 (384)
Q Consensus 350 ~C~a~n~~g 358 (384)
+|.|.|..+
T Consensus 160 ~C~a~n~~~ 168 (184)
T 2gi7_A 160 RCYSFSSRD 168 (184)
T ss_dssp EEEEECTTS
T ss_pred EEEEEeCCC
Confidence 999999865
No 164
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.90 E-value=1.6e-22 Score=162.90 Aligned_cols=170 Identities=23% Similarity=0.314 Sum_probs=126.2
Q ss_pred eccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 85 DIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 85 ~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
-+|+.+.|.|.+.+. +.+.+.|++++... ....++.+.. ......|.|.+++.+|+|.|+|.+
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i--------------~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~~ 78 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAI--------------RYSDRVKTGV--TGEQIWLQINEPTPNDKGKYVMEL 78 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEEC--------------CCCSSEEEEE--ETTEEEEEEESCCGGGCEEEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEc--------------cCCCeEEEEE--eCCEEEEEECCCCcccCEEEEEEE
Confidence 467788888888774 57899999987542 2234555544 344667999999999999999999
Q ss_pred EEccCcceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652 164 IISLNNKVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223 (384)
Q Consensus 164 ~~~~~~~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~ 223 (384)
.+.. +.....+.|.+.. .|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus 79 ~n~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~ 157 (212)
T 2r15_A 79 FDGK-TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKA 157 (212)
T ss_dssp ECSS-CEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEE
T ss_pred ecCC-cceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeE
Confidence 8643 3344455554431 222332335567889999999999999999999999999987
Q ss_pred ccccCceeEec-----cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 224 ALSTGGSIYRG-----NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 224 ~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
+.......... ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~ 210 (212)
T 2r15_A 158 LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVFI 210 (212)
T ss_dssp ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcE-EEEEEEEEEc
Confidence 76655443332 389999999999999999999998875 6677777753
No 165
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=164.50 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=108.8
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVE 269 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 269 (384)
.+.+|+++.|.|.+.+.+. .+.|++++..+..... ....+..|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~ 93 (196)
T 2d3v_A 15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV 93 (196)
T ss_dssp EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence 6889999999999988655 9999999876643211 11234689999999999999999999876532 24567788
Q ss_pred EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
|.. +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+++|..+........ ..........|.|.+++.+|+
T Consensus 94 V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~ 168 (196)
T 2d3v_A 94 VTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQ---LTPSGQFQALFPVGPVTPSHR 168 (196)
T ss_dssp EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECE---ECTTSCEEEEEECCCCBTTBC
T ss_pred ecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccc---cccCCCceeEEEeeecCcccC
Confidence 876 46665443 35688999999999999988 89999999987642211100 001111347899999999999
Q ss_pred eEEEEEEEeCCc
Q psy16652 347 GQYACKAANKYG 358 (384)
Q Consensus 347 G~Y~C~a~n~~g 358 (384)
|.|+|.|.|..+
T Consensus 169 G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 169 WMLRCYGSRRHI 180 (196)
T ss_dssp EEEEEEEEETTE
T ss_pred eeEEEEEEccCC
Confidence 999999999875
No 166
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.90 E-value=9.3e-23 Score=162.40 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=120.9
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccCc---eeEeccEEEEcCCCCCCCeEEEEEEEeCC-CC-ceeeEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGTYYCVAQNGV-GR-GMKRNIAV 268 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l 268 (384)
.+.+|++++|.|.+.+.+. .+.|++++..+..... .......|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l 93 (198)
T 1ugn_A 15 VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 93 (198)
T ss_dssp EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEE
T ss_pred cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEE
Confidence 6889999999999988665 7999999886642211 12245689999999999999999999976 42 23566788
Q ss_pred EEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 269 EVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 269 ~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
.|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+........ . .........|.|.+++.+|
T Consensus 94 ~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~-~--~~~~~~~~~L~i~~v~~~D 168 (198)
T 1ugn_A 94 VVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQ-P--HARGSSRAIFSVGPVSPSR 168 (198)
T ss_dssp EEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC---------CCEEEEEECCCCTTS
T ss_pred EEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCcccccc-c--cCCCcceeEEEecccCccc
Confidence 8877 45665443 3578899999999999987 789999999987743321100 0 0011124789999999999
Q ss_pred CeEEEEEEEeCCcc-----eEEEEEEEEe
Q psy16652 346 FGQYACKAANKYGS-----AQKEIELFDR 369 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~-----~~~~~~l~v~ 369 (384)
+|.|+|.|.|..+. .+..+.|.|.
T Consensus 169 ~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 169 RWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp CEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 99999999998762 2455667665
No 167
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.90 E-value=6.6e-23 Score=165.32 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=124.3
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce---eEecc--EEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---IYRGN--ILKIPNITKTDRGTYYCVAQNGVGRG-MKRNI 266 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~--~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~ 266 (384)
..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ..... .|.|.+++.+|+|.|+|.+.|..+.. .+..+
T Consensus 18 ~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~ 96 (218)
T 1uct_A 18 PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL 96 (218)
T ss_dssp SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCE
Confidence 36889999999999977 67799999998765432221 12334 89999999999999999999976522 24557
Q ss_pred EEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652 267 AVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343 (384)
Q Consensus 267 ~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 343 (384)
.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|+++|..+... . .. ......|.|.+++.
T Consensus 97 ~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~-~~-------~~~~~~L~I~~v~~ 166 (218)
T 1uct_A 97 ELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-H-QS-------GEHPANFSLGPVDL 166 (218)
T ss_dssp EEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-E-EE-------CSSSEEEECCSCCG
T ss_pred EEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-c-cC-------CCccCEEEEccCCc
Confidence 777765 56665544 457789999999997777788899999999876531 1 10 11467899999999
Q ss_pred CCCeEEEEEEEeCCc-----ceEEEEEEEEeeeecC
Q psy16652 344 RQFGQYACKAANKYG-----SAQKEIELFDRETQTG 374 (384)
Q Consensus 344 ~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~~ 374 (384)
+|+|.|+|.|.|... ..+..+.|.|.+..+.
T Consensus 167 ~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~~ 202 (218)
T 1uct_A 167 NVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQ 202 (218)
T ss_dssp GGCEEEEEEEECTTSTTEECCCCCCEEEEEC-----
T ss_pred ccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCCc
Confidence 999999999998642 3345688888887543
No 168
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.90 E-value=3.1e-22 Score=159.12 Aligned_cols=179 Identities=17% Similarity=0.250 Sum_probs=128.1
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+.. .+.+|++|+|.|.+.+ +...+.|+|++...... ............|.|.
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----------------~~~~~~~~~~~~L~i~ 63 (196)
T 3p2t_A 3 LPKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-----------------RQNPLEPKNKARFSIP 63 (196)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-----------------EECCCSSSSEEEEEES
T ss_pred CCCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-----------------ccccccCCceEEEEec
Confidence 357788888777 8899999999999887 66789999987652110 0000012345689999
Q ss_pred ecCCCCCeeEEEEEEEccC-cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccc
Q psy16652 150 EIQETDAGIYKCEVIISLN-NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL 225 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~ 225 (384)
+++.+|+|.|+|.+.+..+ ...+..+.|.|... |.+... +. ..+.+|+.++|.|.+.+ +++.+.|++++..+.
T Consensus 64 ~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~-~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~ 140 (196)
T 3p2t_A 64 SMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSAL-PS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHP 140 (196)
T ss_dssp SCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEE-SC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCG
T ss_pred cCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeC-Cc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCccc
Confidence 9999999999999987665 34566778888643 333221 22 25789999999999977 446899999987664
Q ss_pred ccCce-----eEeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEE
Q psy16652 226 STGGS-----IYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEV 270 (384)
Q Consensus 226 ~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v 270 (384)
..... ......|.|.+++.+|+|.|+|.|.|..+ ...+..+.|.|
T Consensus 141 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 141 LLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp GGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred ceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 43221 22456899999999999999999999765 22344555554
No 169
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.90 E-value=8e-23 Score=167.73 Aligned_cols=189 Identities=15% Similarity=0.223 Sum_probs=128.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
....+.+...+....+.+|++++|.|.+.+.+...+.|++.+.......+.............|+.+.. .....+|.|
T Consensus 21 ~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 98 (237)
T 3sob_L 21 AYADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTI 98 (237)
T ss_dssp ---CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cCccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc--CCCEEEEEE
Confidence 334556777788889999999999999988888899999976432222222211111122356777764 456788999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cC-CCeEEEEeCCCc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISWRRDNSA 223 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W~~~~~~ 223 (384)
.+++.+|+|.|+|.+.+..+........|.|.. +|.+... +....+.+|+.+.|.|.+.+ .| .+.+.|++++..
T Consensus 99 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~ 177 (237)
T 3sob_L 99 SSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIF-PPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 177 (237)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEE-CCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred CCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEe-CCChhhccCCceEEEEEEcccCCCceEEEEEECCCC
Confidence 999999999999999755443344555676643 2322211 11112335889999999977 45 579999999877
Q ss_pred cccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 224 ALST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 224 ~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+... .+.......|.|.....+|+|.|+|.|.|....
T Consensus 178 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 178 QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred CCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 6532 112223456889999999999999999997654
No 170
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.89 E-value=1.3e-22 Score=165.11 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=116.3
Q ss_pred ceEEeecCceEEEEEEecccCCC---eEEEEeCCCcccc-----------c------Ccee-------EeccEEEEcCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALS-----------T------GGSI-------YRGNILKIPNIT 243 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~-----------~------~~~~-------~~~~~l~i~~~~ 243 (384)
..+.+.+|+++.|.|.+.+.+.+ .|.|++++..... . .+.. .....|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 44678899999999998765443 6999997643210 0 0000 013479999999
Q ss_pred CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceee
Q psy16652 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSV 322 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~ 322 (384)
.+|+|.|+|.|.|..+.. . ..+.+...+..........+..|+.+.|.|.+.| .|.|.+.|++++..+........
T Consensus 92 ~~D~G~Y~C~a~n~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~ 168 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFYE-K--ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV 168 (226)
T ss_dssp GGGCEEEEEEEEETTEEE-E--EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred hHHCeeEEEEEECCCcEE-E--EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence 999999999999976643 3 3444444443333334456778999999999988 59999999997654433332222
Q ss_pred eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
..... .....+.+..++.+|.|.|+|.|+|..|..++++.|.|.++
T Consensus 169 ~~~~~---g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 169 VADGV---GLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp EECTT---SCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EECCC---CcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 21110 01223445667889999999999999999999999988654
No 171
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.89 E-value=2.8e-22 Score=159.28 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=112.2
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+. ..+.+|++|+|.|.+.+.+. .+.|+|++...... .. ..........|.|.+
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-----------~~------~~~~~~~~~~L~i~~ 64 (196)
T 2d3v_A 4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWD-----------TQ------NPLEPKNKARFSIPS 64 (196)
T ss_dssp CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSE-----------EE------CCCSSTTEEEEEESS
T ss_pred CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcc-----------cc------cccCCccccEEEecc
Confidence 5678888776 47899999999999887655 99999987652110 00 001133456899999
Q ss_pred cCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652 151 IQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~ 226 (384)
++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... ....+.+|+.++|.|.+.+.| +.+.|++++..+..
T Consensus 65 v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~ 141 (196)
T 2d3v_A 65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL--PSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLS 141 (196)
T ss_dssp CCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCE
T ss_pred CChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc--CCccccCCCcEEEEEEcCCCC-CEEEEEccCCcccc
Confidence 9999999999999865442 335667788876 3443322 224688999999999999877 89999999987643
Q ss_pred cCce--e----EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 227 TGGS--I----YRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 227 ~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.... . .....|.|.+++.+|+|.|+|.|.|..+
T Consensus 142 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 142 WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred cccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 2111 1 1236899999999999999999998643
No 172
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.89 E-value=2.1e-22 Score=159.61 Aligned_cols=177 Identities=21% Similarity=0.384 Sum_probs=129.6
Q ss_pred CCCeeeeCc--ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQ--EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~--~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+|.+...+. ...+.+|++++|.|.+.+.+.+.+.|++++... ....++.+.. ....|.|.
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~--------------~~~~~~~~~~----~~~~L~i~ 63 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLI--------------EENEKYILKG----SNTELTVR 63 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEEC--------------CCSSSEEEET----TTTEEEEC
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEc--------------CCCccEEEeC----CeeEEEEe
Confidence 466665544 456889999999999988888899999977542 1223444432 22379999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc--ccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA--LST 227 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~--~~~ 227 (384)
+++.+|+|.|+|.+.+.. +.....+.|.|..+|.+... ....+.+|+.+.|.|.+.+.|.+.+.|++++... ...
T Consensus 64 ~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~V~~~p~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~ 140 (192)
T 2va4_A 64 NIINSDGGPYVCRATNKA-GEDEKQAFLQVFVQPHIIQL--KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG 140 (192)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEEEEEEEEEE--CCEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTT
T ss_pred cCChhcCcEEEEEEEccc-cccceEEEEEEEccCccccc--CcceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeecc
Confidence 999999999999998654 44456677888777665432 2345778999999999999999999999984322 111
Q ss_pred -----CceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 228 -----GGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 228 -----~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
..... ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 141 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 191 (192)
T 2va4_A 141 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDI 191 (192)
T ss_dssp CBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred ccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCce-EEEEEEEe
Confidence 11111 12579999999999999999999998874 66677665
No 173
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.89 E-value=2e-22 Score=162.46 Aligned_cols=184 Identities=16% Similarity=0.237 Sum_probs=127.5
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE--EE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY--IL 146 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L 146 (384)
...+|.|...+. ..+.+|++|+|.|.+.+ +...+.|+|++..... ..+ .... ..... .|
T Consensus 6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~--------------~~~-~~~~--~~~~~~~~L 66 (218)
T 1uct_A 6 DFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYR--------------EIG-RRLK--FWNETDPEF 66 (218)
T ss_dssp GSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEE--------------ECS-EECC------CCCEE
T ss_pred CCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccc--------------ccc-ccCC--CCcceeeEE
Confidence 456788888776 57899999999999876 5678999998764210 000 0000 11223 79
Q ss_pred EEeecCCCCCeeEEEEEEEccC-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 147 SIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
.|.+++.+|+|.|+|.+.+..+ ...+..+.|.|.. +|.+... + ...+.+|++++|.|.+.+.+.+.+.|+|++.
T Consensus 67 ~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~-p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~ 144 (218)
T 1uct_A 67 VIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD-R-GLVLMPGENISLTCSSAHIPFDRFSLAKEGE 144 (218)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEES-S-CSEECTTCCCEEEEECSSSCCSEEEEEETTC
T ss_pred EEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeC-C-CCccCCCCCEEEEEeCCCCCCCEEEEEECCC
Confidence 9999999999999999987543 2345667787764 3333322 2 3467899999999977666778999999988
Q ss_pred cccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEEEec
Q psy16652 223 AALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEVEFA 273 (384)
Q Consensus 223 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~ 273 (384)
.+............|.|.+++.+|+|.|+|.+.+... ...+..+.|.|...
T Consensus 145 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 145 LSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp SSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred cccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 6654211122356899999999999999999998532 12355667766654
No 174
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.89 E-value=4.3e-22 Score=160.99 Aligned_cols=191 Identities=19% Similarity=0.266 Sum_probs=133.0
Q ss_pred CcceeeeccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccCceee----eCCceEEeeCC-CCceEEEEEee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSGSLII----HDSRFQLTTDP-ETSTYILSIKE 150 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~L~i~~ 150 (384)
+..+.+.+|++++|.|.+.+.+.. .|.|+|++.................. ...|+.+.... ...+.+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 456678999999999999876543 58999988765433333222222111 22344433321 34566899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCce
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS 230 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~ 230 (384)
++.+|+|.|+|.+.+...........+.+..++...........+..|+.+.+.|.+.+.|+|.+.|++++..+......
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~ 165 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF 165 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence 99999999999998766655555555555555443333345566788999999999999999999999998776543322
Q ss_pred e-----EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 231 I-----YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 231 ~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
. ...+.|.|.++..+|+|.|+|.|.|..+.. ...+.+.|
T Consensus 166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v 209 (218)
T 4frw_A 166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL 209 (218)
T ss_dssp ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence 1 224579999999999999999999988765 34444443
No 175
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.89 E-value=1.4e-22 Score=167.72 Aligned_cols=179 Identities=16% Similarity=0.209 Sum_probs=126.5
Q ss_pred CceEEeecCceEEEEEEecc---cCCCeEEEEeCCCccc-----------------------------ccC-ceeEe---
Q psy16652 190 TRSVIVSEGQTVYLYCYANG---FPAPTISWRRDNSAAL-----------------------------STG-GSIYR--- 233 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~~-----------------------------~~~-~~~~~--- 233 (384)
+....+.+|+++.|.|.+.+ .+.+.+.|++++.... ... +....
T Consensus 9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 88 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA 88 (250)
T ss_dssp CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence 44677899999999999976 6788999999874421 000 01111
Q ss_pred ccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEEec---CeEEecC-CCcccccCCcEEEEEEEeccCCCeE
Q psy16652 234 GNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVEFA---PVITINR-PRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
...|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..+ |.+.... ....+.+|+.+.|.|.+.+.|.|.+
T Consensus 89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v 168 (250)
T 2fbo_J 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV 168 (250)
T ss_dssp SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence 2479999999999999999999876643 144677887764 3343322 3355677999999999999999999
Q ss_pred EEEECCEEecCCCceeeeee-----------e---ccCc--cccceEEEeecCCCCCeEEEEEEEe---CCcceEEEEEE
Q psy16652 306 VWIKDGVQIMNNQHYSVSHF-----------A---TSDE--FSDTSLRVITIERRQFGQYACKAAN---KYGSAQKEIEL 366 (384)
Q Consensus 306 ~W~~~~~~~~~~~~~~~~~~-----------~---~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n---~~g~~~~~~~l 366 (384)
.|++++..+........... . .... .....|.|.+++.+|+|.|+|.|.| ..|+...++.|
T Consensus 169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l 248 (250)
T 2fbo_J 169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTIL 248 (250)
T ss_dssp EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEE
T ss_pred EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEE
Confidence 99999987754332110000 0 0000 0236899999999999999999999 55566666666
Q ss_pred EE
Q psy16652 367 FD 368 (384)
Q Consensus 367 ~v 368 (384)
.|
T Consensus 249 ~V 250 (250)
T 2fbo_J 249 KV 250 (250)
T ss_dssp EC
T ss_pred eC
Confidence 54
No 176
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.89 E-value=6.3e-23 Score=164.90 Aligned_cols=190 Identities=20% Similarity=0.260 Sum_probs=137.5
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
++.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.... ...............++.+.. ..|.|.++
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~r~~~~~------~~L~i~~~ 75 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTT--RLVCYNNKITASYEDRVTFLP------TGITFKSV 75 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEE--EESEETTEECTTTTTTCEEET------TEEECSCC
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCcee--EEEEecCccCccccCceEeec------cEEEEeeC
Confidence 4566777778889999999999999988888999999876510 000000000011223444332 47999999
Q ss_pred CCCCCeeEEEEEEEccC-cceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCc
Q psy16652 152 QETDAGIYKCEVIISLN-NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
+.+|+|.|+|.+.+..+ ...+..+.|.|..+|...... ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....
T Consensus 76 ~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~ 154 (209)
T 1nbq_A 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN-IPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154 (209)
T ss_dssp CTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCC-CBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred CHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcc-cccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence 99999999999987654 234567788888777665443 33458899999999997 8899999999999887654332
Q ss_pred e-----------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEE
Q psy16652 230 S-----------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEV 270 (384)
Q Consensus 230 ~-----------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v 270 (384)
. ......|.|.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp SSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred cceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 1 1134689999999999999999999998876 344455554
No 177
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.89 E-value=5.1e-22 Score=158.27 Aligned_cols=180 Identities=12% Similarity=0.168 Sum_probs=126.4
Q ss_pred eeeeCccee-eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 75 ISYISQEQI-KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 75 ~~~~~~~~~-v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
+.+.+.... +.+|++++|.|.+.+.|.+.+.|++..... + ..+.. . ......|.|.+++.
T Consensus 3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~------~---------~~~~~--~--~~~~~~L~I~~v~~ 63 (202)
T 1vca_A 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSP------L---------NGKVT--N--EGTTSTLTMNPVSF 63 (202)
T ss_dssp EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCC------C---------SSEEE--E--ETTEEEEEESSCCG
T ss_pred EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCC------c---------cceEE--E--cCCccEEEECcCCH
Confidence 344455554 459999999999998888889998833210 0 01111 1 12345699999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC--CeEEEEeCCCcccccCce
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA--PTISWRRDNSAALSTGGS 230 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~ 230 (384)
+|+|.|+|.+.+.. +..+..+.|.|..+|......+. ..+.+|+.++|.|.+.+. |. +.+.|++++..+......
T Consensus 64 ~D~G~Y~C~a~n~~-~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~ 141 (202)
T 1vca_A 64 GNEHSYLCTATCES-RKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL 141 (202)
T ss_dssp GGCSEEEEEEEETT-EEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEEEEECC-ceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccc
Confidence 99999999998664 45677888999877654322222 457899999999999774 43 379999998765432111
Q ss_pred --------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCc------eeeEEEEEEEecCe
Q psy16652 231 --------IYRGNILKIPNITKTDRGTYYCVAQNGVGRG------MKRNIAVEVEFAPV 275 (384)
Q Consensus 231 --------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~------~~~~~~l~v~~~p~ 275 (384)
......|.|.....+|+|.|+|.|.|..+.. ....+.|.|.++|.
T Consensus 142 ~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 142 EDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp SCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 1223457788888889999999999977652 35678888988885
No 178
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.89 E-value=1.4e-22 Score=165.55 Aligned_cols=191 Identities=19% Similarity=0.311 Sum_probs=136.4
Q ss_pred ccCCCCeeeeC----cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652 69 SQRTPTISYIS----QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144 (384)
Q Consensus 69 ~~~~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (384)
...+|.+...+ ....+.+|+++.|.|.+.+.+.+.+.|++++....... ....... .....
T Consensus 12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~----~~~~~ 76 (231)
T 3ojm_B 12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH-----------RIGGYKV----RNQHW 76 (231)
T ss_dssp -CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGG-----------STTCCEE----EGGGT
T ss_pred CccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccc-----------cccceee----ecCcc
Confidence 34456665554 66779999999999999988888999999775421110 0001111 12234
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEe-
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR- 219 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~- 219 (384)
.|.|.+++.+|+|.|+|.+.+.. +.....+.|.|... |......+....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus 77 ~L~i~~~~~~d~G~Y~C~~~n~~-~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~ 155 (231)
T 3ojm_B 77 SLIMESVVPSDKGNYTCVVENEY-GSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKH 155 (231)
T ss_dssp EEEECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEE
T ss_pred eEEEecCCcccCEEEEEEEeccc-CcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEEC
Confidence 79999999999999999998654 44566677777653 2232233556778999999999999999999999999
Q ss_pred ---CCCcccccCcee-----------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 220 ---DNSAALSTGGSI-----------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 220 ---~~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
++..+....... .....|.|.++..+|+|.|+|.+.|..|.. +..+.|.|..+|..
T Consensus 156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWLTVLPKQQA 225 (231)
T ss_dssp CCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCC--
T ss_pred CCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEEEEecCCCC
Confidence 665543332211 123579999999999999999999998876 77888888877753
No 179
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.89 E-value=2.1e-22 Score=160.95 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=125.0
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCC-----ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCC-CCceEEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADD-----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP-ETSTYILS 147 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~ 147 (384)
.+..++..+.+.+|+++.|.|.+.+.+. +.+.|++.+... ....+++.+..+. ..+..+|.
T Consensus 4 ~v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~-------------~~~~~r~~~~~~~~~~~~~~L~ 70 (202)
T 3bp6_B 4 TVTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDT-------------SLQSERATLLEEQLPLGKALFH 70 (202)
T ss_dssp CEECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--C-------------CCBCSSCEECGGGGGGTEEEEE
T ss_pred EEecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcc-------------cccCCceEEeeccccCCeeEEE
Confidence 3445556677999999999999988765 789999943321 1223444443321 22557899
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCccccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~ 227 (384)
|.+++.+|+|.|+|.+.+..+ ..+..+.|.|..++..+.. ....+.+|+.+.|.|.+.|.|.+.+.|++++..+...
T Consensus 71 I~~v~~~D~G~Y~C~~~~~~~-~~~~~~~l~V~~~~~~p~~--~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~ 147 (202)
T 3bp6_B 71 IPSVQVRDSGQYRCLVICGAA-WDYKYLTVKVKASYMRIDT--RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS 147 (202)
T ss_dssp ECSCCGGGCEEEEEEEEETTE-EEEEEEEEEEEBCCCCEEE--EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEE
T ss_pred ECCCCHHHCcEEEEEEEeCCC-cceEEEEEEecCCCCcccE--EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCc
Confidence 999999999999999986543 3467788888765432211 1124568999999999999999999999987754321
Q ss_pred CceeEe--ccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 228 GGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 228 ~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
...... ...+.+..+..+|+|.|+|.|.|..+.. ...+.|.|..
T Consensus 148 ~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~v~~ 193 (202)
T 3bp6_B 148 HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE-LTSAIIDPLS 193 (202)
T ss_dssp EEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTE-EEEEEECC--
T ss_pred eeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCccc-ccEEEEEecC
Confidence 111011 1356677888999999999999998875 5666666543
No 180
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=166.62 Aligned_cols=190 Identities=19% Similarity=0.295 Sum_probs=131.8
Q ss_pred CCCCeeee----CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 71 RTPTISYI----SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 71 ~~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
.+|.+..+ +....+.+|+++.|.|.+.+.+.+.+.|++++....... ....... ......|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-----------~~~~~~~----~~~~~~L 74 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH-----------RIGGIKL----RHQQWSL 74 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGG-----------STTCCEE----EGGGTEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCC-----------cccceee----eccceEE
Confidence 34555433 335678999999999999988888999999775421110 0001111 1223479
Q ss_pred EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecccCCCeEEEEe---
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRR--- 219 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~--- 219 (384)
.|.+++.+|+|.|+|.+.+.. +.....+.|.|... +......+....+.+|+.+.|.|.+.+.|.+.+.|++
T Consensus 75 ~i~~v~~~d~G~Y~C~~~~~~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~ 153 (241)
T 3grw_A 75 VMESVVPSDRGNYTCVVENKF-GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVE 153 (241)
T ss_dssp EECSCCGGGCEEEEEEEEETT-EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECC
T ss_pred EEEeCCcccCEEEEEEEeecC-CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEccc
Confidence 999999999999999998644 34556677777642 2233233456678899999999999999999999999
Q ss_pred -CCCcccccCcee------------EeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEE
Q psy16652 220 -DNSAALSTGGSI------------YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277 (384)
Q Consensus 220 -~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 277 (384)
++..+....... .....|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|...
T Consensus 154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~ 223 (241)
T 3grw_A 154 VNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVA-EKAFWLSVHGPRAAE 223 (241)
T ss_dssp SSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEC-------
T ss_pred CCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceE-EEEEEEEecCCCCCC
Confidence 666554433221 134579999999999999999999998876 778888888877643
No 181
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.89 E-value=2.2e-22 Score=162.21 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=125.9
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+............+|+.+.. .....+|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSG--SGTDFTLTISDLE 79 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEECSCC
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEec--CCCEEEEEECCCC
Confidence 45677788888999999999999988888899999975332211111111111112246777764 5567789999999
Q ss_pred CCCCeeEEEEEEEccCc--ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 153 ETDAGIYKCEVIISLNN--KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
.+|+|.|+|.+.+..+. .......|.|.. +|.+... .....+.+|+.+.|.|.+.+ .|.+.+.|++++..+..
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 80 CADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIF-PPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTT 158 (213)
T ss_dssp GGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEE-CCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCS
T ss_pred hHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEe-CCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCC
Confidence 99999999999865543 344556666643 2322211 11122456999999999987 88889999999876653
Q ss_pred cC-----------ceeEeccEEEEcCCCCCCCeEEEEEEE
Q psy16652 227 TG-----------GSIYRGNILKIPNITKTDRGTYYCVAQ 255 (384)
Q Consensus 227 ~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 255 (384)
.. +.....+.|.|..+..+|+|.|+|.|.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 159 GIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp SEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred CeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 21 222234579999999999999999999
No 182
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=160.67 Aligned_cols=177 Identities=14% Similarity=0.235 Sum_probs=129.4
Q ss_pred CceEEeecCceEEEEEEecccCCC---eEEEEeCCCcccccCcee-------------------------EeccEEEEcC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALSTGGSI-------------------------YRGNILKIPN 241 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~-------------------------~~~~~l~i~~ 241 (384)
+..+.+.+|+++.|.|.+.+.+.+ .|.|++++.......... ....+|.|.+
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 566788999999999999887665 489999876543211000 0124699999
Q ss_pred CCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE-EecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCce
Q psy16652 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~ 320 (384)
++.+|+|.|.|.+.+..+........+.+..++.. ........+..++.+.+.|.+.+.|+|.+.|++++..+......
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~ 165 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF 165 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence 99999999999999876655455555555544433 23344456677899999999999999999999998777544332
Q ss_pred eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 321 ~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
... ......+.|.|..++.+|.|.|+|.|+|..|..+..+.|.|..
T Consensus 166 ~~~----~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V 211 (218)
T 4frw_A 166 KHS----RSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHV 211 (218)
T ss_dssp ECS----SSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCE
T ss_pred ecC----CcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEE
Confidence 211 1112346799999999999999999999999888777776654
No 183
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.89 E-value=2.9e-22 Score=159.94 Aligned_cols=178 Identities=28% Similarity=0.331 Sum_probs=127.9
Q ss_pred eeeCcceeeeccCcEEEEEE-eecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 76 SYISQEQIKDIAQTADLKCS-VQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
...+....+.+|+++.|.|. ..+.+. +.+.|++++..... ....+..... ....|.|.+++.
T Consensus 12 ~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~------------~~~~~~~~~~----~~~~L~i~~v~~ 75 (201)
T 3s97_C 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI------------TMDKRRFVSQ----TNGNLYIANVEA 75 (201)
T ss_dssp SSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC------------CCSSSEEECT----TTCCEEESSCCG
T ss_pred cCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee------------eeCCCeEEEc----CCCeEEECcCCc
Confidence 33456677999999999999 677777 89999998765310 0111221211 123699999999
Q ss_pred CCCeeEEEEEEEccCccee--eeEEEEEec-------CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652 154 TDAGIYKCEVIISLNNKVS--AEVELIVRR-------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA 224 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~--~~~~l~v~~-------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~ 224 (384)
+|+|.|+|.+.+..+.... ..+.+.+.. +|.+... .....+.+|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus 76 ~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~ 154 (201)
T 3s97_C 76 SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ-FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPM 154 (201)
T ss_dssp GGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEE-CCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCC
T ss_pred ccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEec-CCceEEecCCcEEEEEEccCCCCCceEEEeCCCcC
Confidence 9999999999875544322 334444331 2222222 23567889999999999999999999999999876
Q ss_pred cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
.........+..|.|.++..+|+|.|+|.+.|..|.. +..+.|.|+
T Consensus 155 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 200 (201)
T 3s97_C 155 PSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKD-KHQARIYVQ 200 (201)
T ss_dssp CTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred CCceeecCCCCEEEEccCChhhCEEEEEEEEecCCce-eeeEEEEEe
Confidence 6543344456799999999999999999999988875 667777765
No 184
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.89 E-value=1.1e-22 Score=158.35 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=115.2
Q ss_pred eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc----------ccCce-eEeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL----------STGGS-IYRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~----------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
.+.+.+|+++.|.|...+ .+.+.+.|++++..+. ...+. ...++.|.|.+++.+|+|.|+|.+.|..
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~ 84 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN 84 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence 356789999999995432 4556899999885332 11111 1234569999999999999999999988
Q ss_pred CCc-eeeEEEEEEEecC---eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652 259 GRG-MKRNIAVEVEFAP---VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT 334 (384)
Q Consensus 259 ~~~-~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (384)
+.. .+..+.|.|..++ .+. ..+..+.|.|.+.|.|.|.+.|+++|..+....+
T Consensus 85 g~~~~~~~~~l~V~~~~~~p~i~--------~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~--------------- 141 (176)
T 1hng_A 85 GTRILNKALDLRILEMVSKPMIY--------WECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQ--------------- 141 (176)
T ss_dssp CCEEEEEEEEEEEECCCCCCEEE--------EETTTTEEEEECSSCSSCEEEEEETTEEEEEESS---------------
T ss_pred CCEEEEEEEEEEEeCCCCCCEEE--------ecCCcEEEEEEecCCCCcEEEEEECCEECCCCCc---------------
Confidence 775 3566777776542 222 2244589999999999999999999988754332
Q ss_pred eEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 335 SLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.|..++.+|.|.|+|.|.|..|...+...|.+.
T Consensus 142 -~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~~ 175 (176)
T 1hng_A 142 -KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNCP 175 (176)
T ss_dssp -SEEEEECSCCSSCEEEEEEETTEEEEEEECCCCC
T ss_pred -EEEEEEEccCCeEEEEEEEecCCCceecccccCC
Confidence 3445677899999999999999999988777653
No 185
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.89 E-value=4.8e-22 Score=159.86 Aligned_cols=174 Identities=18% Similarity=0.268 Sum_probs=121.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--cc------------cccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AA------------LSTGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.+.+.+.|+++.. .+ ........ ....|.|.+++.+|+|.|+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF 86 (210)
T ss_dssp CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence 556778999999999999988888999998532 11 00111111 1238999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCcee--eee
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYS--VSH 324 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~--~~~ 324 (384)
|.+.+..+........|.|.. +|.+...++...+..|+.++|.|.+.| .|++ .+.|+++|..+....... ...
T Consensus 87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 166 (210)
T 1lk3_L 87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD 166 (210)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence 999987654333344566654 577776555555568999999999987 4554 899999999886541111 111
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
...+.....+.|.|..+..+|+|.|+|.|.|.......+
T Consensus 167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (210)
T 1lk3_L 167 SKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV 205 (210)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred CCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence 111111123579999999999999999999987754433
No 186
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.89 E-value=2.6e-22 Score=166.09 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=129.4
Q ss_pred eeeeCcceeeeccCcEEEEEEeec---CCCccEEEEEeCCCCCCcccceeccC------------------ceeeeCCce
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSG------------------SLIIHDSRF 133 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 133 (384)
+..++..+.+.+|++++|.|.+.+ .+.+.+.|++++.... ...+.... ......+|+
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 82 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDR--STKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRA 82 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTE--EEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTE
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCc--cEEEEeeccccccccccccccccccccCCCcCceE
Confidence 344455677899999999999987 6778899999875421 11111100 001123344
Q ss_pred EEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc----eeeeEEEEEecC---CccccCCCceEEeecCceEEEEEE
Q psy16652 134 QLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK----VSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCY 206 (384)
Q Consensus 134 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~ 206 (384)
.+.. .+..+|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..+ +......+....+.+|+.+.|.|.
T Consensus 83 ~~~~---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~ 159 (250)
T 2fbo_J 83 SVAN---LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCP 159 (250)
T ss_dssp ECSC---TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCC
T ss_pred Eecc---CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEE
Confidence 3332 134579999999999999999998654432 245778888764 233333445567788999999999
Q ss_pred ecccCCCeEEEEeCCCcccccC------------------------ceeE-eccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 207 ANGFPAPTISWRRDNSAALSTG------------------------GSIY-RGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 207 ~~~~~~~~v~W~~~~~~~~~~~------------------------~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+.|.|.+.|++++..+.... .... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 160 ~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 239 (250)
T 2fbo_J 160 CTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL 239 (250)
T ss_dssp EESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred ecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence 9998889999999887654321 1111 23689999999999999999999977655
Q ss_pred eeeEEEE
Q psy16652 262 MKRNIAV 268 (384)
Q Consensus 262 ~~~~~~l 268 (384)
.+....+
T Consensus 240 g~~~~~~ 246 (250)
T 2fbo_J 240 DADRSST 246 (250)
T ss_dssp GEEEEEE
T ss_pred CccceeE
Confidence 4333333
No 187
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.89 E-value=9.9e-22 Score=164.87 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=124.0
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
..+.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++++.......+.............|+.+.. .....+|.|.+
T Consensus 11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~ 88 (276)
T 3auv_A 11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG--SGTDFTLTISS 88 (276)
T ss_dssp -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESS
T ss_pred cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec--cCCeEEEEEcc
Confidence 4556777788888999999999999988888899999976532211111111110011245777654 45667899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc-------------cccCCCceEEeecCceEEEEEEecccC--CCeE
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI-------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APTI 215 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v 215 (384)
++.+|+|.|+|.+.+..+........|.|..++. .....+....+.+|+++.|.|.+.+.+ .+.+
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v 168 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWI 168 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEE
Confidence 9999999999999865433334445666655431 111223456788999999999998766 4799
Q ss_pred EEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 216 SWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 216 ~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.|++++. ... ...+.... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 169 ~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 169 HWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF 235 (276)
T ss_dssp EEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence 9999642 110 01111111 127999999999999999999997
No 188
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.89 E-value=9.4e-22 Score=156.57 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=122.5
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+. ..+.+|++++|.|.+.+.+. .+.|+|++...... . .... . ......|.|.
T Consensus 3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~-----~-------~~~~---~--~~~~~~L~i~ 63 (198)
T 1ugn_A 3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWI-----T-------RIPQ---E--LVKKGQFPIP 63 (198)
T ss_dssp CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHH-----H-------TSCH---H--HHTTTEEEES
T ss_pred CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccc-----c-------cccc---c--CCcccEEEEC
Confidence 35678887776 47899999999999987665 79999987652100 0 0000 0 1122369999
Q ss_pred ecCCCCCeeEEEEEEEcc-C-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652 150 EIQETDAGIYKCEVIISL-N-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA 224 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~-~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~ 224 (384)
+++.+|+|.|+|.+.+.. + ...+..+.|.|.. +|.+... ....+.+|+++.|.|.+.+. .+.+.|++++..+
T Consensus 64 ~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~ 140 (198)
T 1ugn_A 64 SITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ--PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDE 140 (198)
T ss_dssp SCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEE--SCSEEETTCCEEEEEECSSC-CSEEEEEEC----
T ss_pred CCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccC--CccccCCCCcEEEEEecCCC-CcEEEEEECCCcc
Confidence 999999999999998765 3 2345677888876 2333221 22468899999999999887 7799999998876
Q ss_pred cccCce---eE---eccEEEEcCCCCCCCeEEEEEEEeCCCCc----eeeEEEEEEE
Q psy16652 225 LSTGGS---IY---RGNILKIPNITKTDRGTYYCVAQNGVGRG----MKRNIAVEVE 271 (384)
Q Consensus 225 ~~~~~~---~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~ 271 (384)
...... .. ....|.|.+++.+|+|.|+|.|.|..+.. .+..+.|.|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 141 HPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp --CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred CCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 432211 11 13689999999999999999999976532 2455666553
No 189
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.89 E-value=4.1e-22 Score=160.51 Aligned_cols=178 Identities=18% Similarity=0.179 Sum_probs=121.2
Q ss_pred Ccceeeecc--CcEEEEEEeecCCCccEEEEEe--CCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 79 SQEQIKDIA--QTADLKCSVQYADDYPVIWMKM--DTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 79 ~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+..+.+.+| ++++|.|.+.+ |.+.+.|++. +... + ..+.++.... ...|.|.+++.+
T Consensus 14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~------~-------~~~~~~~~~~-----~~~l~I~~v~~~ 74 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRF------V-------PDGNRISWDS-----KKGFTIPSYMIS 74 (213)
T ss_dssp CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEE------C-------CCSSSCEEET-----TTEEEEEGGGTT
T ss_pred ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCcc------c-------cCCCcccccC-----CccEEEccCChh
Confidence 466778999 99999999876 6679999986 2221 0 1111222211 125999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEec--CCccccCCCceEEeecCceEEEEEEecccC--CCeEEEEeCCCcccccCc-
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGG- 229 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~~~~- 229 (384)
|+|.|+|.+.+......+..+.|.|.. +|.+.........+.+|+++.|.|.+.+.| .+.+.|++++..+.....
T Consensus 75 D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~ 154 (213)
T 2x1w_L 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLV 154 (213)
T ss_dssp TCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEE
T ss_pred cCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEe
Confidence 999999999864433444446777753 222332334445789999999999998754 347999998876432111
Q ss_pred --e---------eEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 230 --S---------IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 230 --~---------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
. ......|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 155 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC----
T ss_pred ccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEeccccc
Confidence 0 1223479999999999999999999998875 78889999888765
No 190
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.89 E-value=2.4e-22 Score=162.07 Aligned_cols=184 Identities=17% Similarity=0.263 Sum_probs=124.7
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+..+.+.+|++++|.|.+.+.+.+.+.|++++.......+.............|+.+.. .....+|.|.+++.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 80 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET 80 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc--CCCEEEEEECCCCh
Confidence 3455577788999999999999988877789999976432211111111000011235676665 45567899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc-
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST- 227 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~- 227 (384)
+|+|.|+|.+.+..+........|.|.. +|.+....+. .....|+.+.|.|.+.+ .|.+ .+.|++++..+...
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~ 159 (213)
T 3d9a_L 81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGV 159 (213)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCccee
Confidence 9999999999865443344455677764 3433322221 12346899999999977 5665 89999998766543
Q ss_pred C----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 228 G----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 228 ~----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
. +.......|.|.++..+|+|.|+|.|.|....
T Consensus 160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 160 LNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred eecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 0 11122348999999999999999999997554
No 191
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.89 E-value=2.6e-22 Score=157.68 Aligned_cols=160 Identities=18% Similarity=0.235 Sum_probs=119.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+.. .+.+|++++|.|.+.+ +...+.|+|++... ......|.|
T Consensus 5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~--------------------------~~~~~~L~i 56 (184)
T 2gi7_A 5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR--------------------------YQDQAVLFI 56 (184)
T ss_dssp CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC--------------------------EESSSEEEE
T ss_pred CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc--------------------------cCcccEEEE
Confidence 4467888887764 7899999999999876 66799999976430 011236999
Q ss_pred eecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652 149 KEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA 224 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~ 224 (384)
.+++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... + ...+.+|+.+.|.|.+.+. ++.+.|++++..+
T Consensus 57 ~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~-p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~ 133 (184)
T 2gi7_A 57 PAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQ-P-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPA 133 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEE-C-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCT
T ss_pred CcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeC-C-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcC
Confidence 999999999999999875442 345667777754 2333222 1 2346789999999998764 4699999999876
Q ss_pred cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
............|.|.+++.+|+|.|+|.+.|..+
T Consensus 134 ~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 134 PYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred cceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 55333334566799999999999999999999754
No 192
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.88 E-value=3.6e-22 Score=154.98 Aligned_cols=155 Identities=16% Similarity=0.254 Sum_probs=121.6
Q ss_pred ceEEeecCceEEEEEEecccC-CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
....+.+|+.+.|.|.+.+.| .+.+.|++++..+... ...+.+.+++.+|+|.|+|.+.+... +..+.|.
T Consensus 12 ~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~ 82 (170)
T 3ry4_A 12 PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLT 82 (170)
T ss_dssp CCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEE
T ss_pred CCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCCc---eEeEEEE
Confidence 334578999999999998876 5689999998776543 23466788999999999999997433 4457888
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 348 (384)
|..+|.+.. .+...+.+|+.+.|.|.+. +.|.+.+.|+++|..+.... ....|.|.+++.+|.|.
T Consensus 83 v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------------~~~~L~i~~v~~~d~G~ 148 (170)
T 3ry4_A 83 VLFEWLVLQ-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH-------------LDPTFSIPQANHSHSGD 148 (170)
T ss_dssp EECCSEEEE-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------SCCEEEESSCCGGGCEE
T ss_pred EECCceEec-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------CCCeEEEEeccccCCEE
Confidence 888776544 4456678899999999995 55668999999998764221 35679999999999999
Q ss_pred EEEEEEeCCcc-eEEEEEEEE
Q psy16652 349 YACKAANKYGS-AQKEIELFD 368 (384)
Q Consensus 349 Y~C~a~n~~g~-~~~~~~l~v 368 (384)
|+|.|.|..|. .+..+.|.|
T Consensus 149 Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 149 YHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEEEETTEEEECCCEEEEE
T ss_pred EEEEEEeCcCccccccEEEEE
Confidence 99999999997 445566665
No 193
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.88 E-value=2.7e-21 Score=156.94 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=121.0
Q ss_pred CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCcccc---------------cCceeE-------eccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSAALS---------------TGGSIY-------RGNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~~~~---------------~~~~~~-------~~~~l~i~~~ 242 (384)
+..+.+.+|+++.|.|.+.+.| ...+.|++++..+.. ..+... ....|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 87 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV 87 (222)
T ss_dssp CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence 4556788999999999987655 338999997521100 011111 1237999999
Q ss_pred CCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEEC-CEEecCCCcee
Q psy16652 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD-GVQIMNNQHYS 321 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~ 321 (384)
+.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+..|+.+.|.|.+.|+|.|.+.|+++ +..+.......
T Consensus 88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~ 165 (222)
T 3sbw_C 88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT 165 (222)
T ss_dssp CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE
T ss_pred ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE
Confidence 99999999999998 333 4667788888666432211112456789999999999999999999998 65554332221
Q ss_pred eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
......+ ......+..+..+|.|.|+|.|.|..|....++.|.|.+.|
T Consensus 166 ~~~~~~~---~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p 213 (222)
T 3sbw_C 166 NSKREEK---LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213 (222)
T ss_dssp ECC-------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred EEcCCCC---CEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence 1111111 11122233456789999999999999999999999988654
No 194
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.88 E-value=1.2e-22 Score=159.83 Aligned_cols=145 Identities=17% Similarity=0.299 Sum_probs=109.2
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcC-CCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN-ITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
....+|+++.|.|.+.+ +. .+.|++++..+... .+.+|.|.+ ++.+|+|.|+|.|.|..|.. +..+.+.|.
T Consensus 9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~ 80 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVG 80 (186)
T ss_dssp EEEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCC
T ss_pred EEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEe
Confidence 34578999999999987 43 49999999876543 345799999 99999999999999987763 344444333
Q ss_pred e--cCeE----------------EecC----CC---cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeee
Q psy16652 272 F--APVI----------------TINR----PR---QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326 (384)
Q Consensus 272 ~--~p~~----------------~~~~----~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 326 (384)
. ++.. .... .. ..+.+|+.+.|.|.+ |.|.+.|+++|..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~------- 150 (186)
T 1jbj_A 81 SADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA------- 150 (186)
T ss_dssp SCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------
T ss_pred cccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------
Confidence 2 1110 0000 00 123489999999999 8889999999998864332
Q ss_pred ccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 327 TSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 327 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
....|.|.+++.+|+|.|+|.|.|..|+.
T Consensus 151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 46789999999999999999999999976
No 195
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.88 E-value=1.5e-21 Score=161.72 Aligned_cols=201 Identities=16% Similarity=0.184 Sum_probs=133.3
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-----cCceeeeCCceEEeeCCCCceEEEE
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-----SGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
+...+....+.+|++|+|.|.+.+.+ ...+.|+|.........+.... ........+|+.+..+.....++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 44567778899999999999987743 6789999955332211111111 0011123468888776566788999
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecC---------------CccccCCCceEEeecCceEEEEEEecccCC
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP---------------PIISDNSTRSVIVSEGQTVYLYCYANGFPA 212 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 212 (384)
|.+++.+|+|.|+|.+.+...........|.|... +.+. ..+....+.+|++++|.|.+.+.+.
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~ 162 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT-QTPASLAVSLGQRATISCRASENVD 162 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE-EECSEEEECTTSCEEEEEEESSCCE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE-CcCCeEEEeCCCCEEEEEEecCccc
Confidence 99999999999999997644333345667777642 2222 2345577899999999999988776
Q ss_pred C----eEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 213 P----TISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 213 ~----~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+ .+.|+++.. ... ...+... ....|.|.+++.+|+|.|+|.+.|..+........|.|
T Consensus 163 ~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v 242 (253)
T 3uzq_A 163 RYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI 242 (253)
T ss_dssp ETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred cCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence 6 899998532 111 0011111 12369999999999999999999865444444556767
Q ss_pred EecCeE
Q psy16652 271 EFAPVI 276 (384)
Q Consensus 271 ~~~p~~ 276 (384)
...+..
T Consensus 243 ~~~~~~ 248 (253)
T 3uzq_A 243 KRPLEH 248 (253)
T ss_dssp CCC---
T ss_pred cCCCCC
Confidence 655443
No 196
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.88 E-value=4.6e-22 Score=154.34 Aligned_cols=165 Identities=16% Similarity=0.223 Sum_probs=125.6
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
.+|.+...+....+.+|+++.|.|.+.+.+ ...+.|++++..... ....+.|.
T Consensus 3 p~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~--------------------------~~~~~~~~ 56 (170)
T 3ry4_A 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT--------------------------HTQPSYRF 56 (170)
T ss_dssp CBCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT--------------------------CCSSEEEE
T ss_pred CCCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEccc--------------------------CccceEEE
Confidence 467788888888899999999999998875 678999997654210 11136778
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccC
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTG 228 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 228 (384)
+++.+|+|.|+|.+.+ ...+..+.|.|..++.... .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 57 ~~~~~d~G~Y~C~~~~---~~~s~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~- 130 (170)
T 3ry4_A 57 KANNNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS- 130 (170)
T ss_dssp ECCGGGCEEEEEEETT---SBCCCCEEEEEECCSEEEE--CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE-
T ss_pred ecccccCeEEEEEEeC---CCceEeEEEEEECCceEec--CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc-
Confidence 9999999999999863 3345567788877664433 233457899999999999 45566899999988765321
Q ss_pred ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 229 ~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
..+..|.|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus 131 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 131 ---HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp ---SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ---CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 235679999999999999999999988765566666665
No 197
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.88 E-value=8.9e-22 Score=158.81 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=125.4
Q ss_pred eCcceeeeccCcEEEEEEeecC-------CCccEEEEEeCCCCCCcccceeccC---ceeeeCCceEEeeCCCCceEEEE
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYA-------DDYPVIWMKMDTAKKMEPLPISMSG---SLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
.+..+.+.+|++|+|.|.+... +...+.|++++.......+...... ......+|+.+..+...+..+|.
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 3566778999999999998754 4678999997754221112211110 01123467776654445567899
Q ss_pred EeecCCCCCeeEEEEEEEccCcce---eeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----cCCCeEEEEeC
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----FPAPTISWRRD 220 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~~~~~v~W~~~ 220 (384)
|.+++.+|+|.|+|.+.+..+... +..+.|.|..++..+..... ..+.+|+.+.|.|.+.+ .|.+.+.|+++
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~-~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~ 164 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL-EPLESGRPTRLSCSLPGSCEAGPPLTFSWTGN 164 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---CCCCTTCCEEEEEECTTCCSCSSCCEEEEESS
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC-ccccCCCeEEEEEEeccCCCCCCCceEEEeCC
Confidence 999999999999999986542222 35678888764322111111 12678999999999976 37789999999
Q ss_pred CCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEE
Q psy16652 221 NSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVE 269 (384)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~ 269 (384)
+...... .....+.|.|..+..+|+|.|+|.|.|..+.. .+..+.|.
T Consensus 165 ~~~~~~~--~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 165 ALSPLDP--ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp TTSSSCS--SCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCccCCC--CceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 8654322 22456789999999999999999999965432 24444443
No 198
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.88 E-value=1.2e-21 Score=160.06 Aligned_cols=180 Identities=16% Similarity=0.232 Sum_probs=127.9
Q ss_pred CCceEEeecCceEEEEEEecccCC-CeEEEEeCCCccc---------c----cCce-----------eEeccEEEEcCCC
Q psy16652 189 STRSVIVSEGQTVYLYCYANGFPA-PTISWRRDNSAAL---------S----TGGS-----------IYRGNILKIPNIT 243 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~---------~----~~~~-----------~~~~~~l~i~~~~ 243 (384)
.+....+.+|+++.|.|.+.+.+. +.+.|++++.... . .... ......|.|.+++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~ 85 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ 85 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence 356678999999999999988775 7999998765422 0 0111 1223459999999
Q ss_pred CCCCeEEEEEEEeCCCCceeeEEEEEEEecC---eEEecCCCcccccCCcE-EEEEEE-eccCCCeEEEEECCEEecCCC
Q psy16652 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP---VITINRPRQGQALQYDA-ILECHV-EAYPPPAIVWIKDGVQIMNNQ 318 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W~~~~~~~~~~~ 318 (384)
.+|+|.|+|.+.+.........+.|.|..+| .+...+....+..|+.+ .|.|.+ .+.|.|.+.|+++|..+....
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~ 165 (231)
T 2pet_A 86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV 165 (231)
T ss_dssp GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence 9999999999999763334777888888774 55555566667788887 999999 899999999999999987665
Q ss_pred ----ceeeeeeec----cCccccceEEEeecCCCCCeEEEEEEEe-----CCcc-eEEEEEEEE
Q psy16652 319 ----HYSVSHFAT----SDEFSDTSLRVITIERRQFGQYACKAAN-----KYGS-AQKEIELFD 368 (384)
Q Consensus 319 ----~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-----~~g~-~~~~~~l~v 368 (384)
+..+..... +.....+.|.|.....+|.|.|+|.|.| ..|. .+..+.|.|
T Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 433332111 1111125678875556679999999999 4554 444444443
No 199
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.88 E-value=5.9e-22 Score=159.36 Aligned_cols=182 Identities=14% Similarity=0.242 Sum_probs=121.5
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+.. |....+.+|++++|.|.+.+.+.+.+.|+++........+.............|+.+.. ......|.|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG--SGTDFTLTIDPVEAD 80 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCCGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe--cCCEEEEEECCCCHH
Confidence 444 67778999999999999988777789999975432111111111000011235776665 455678999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc--
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST-- 227 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~-- 227 (384)
|+|.|+|.+.+..+........|.|.. +|.+....+.. .+.+|+.+.|.|.+.+ .|.+ .+.|++++..+...
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 159 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL 159 (210)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence 999999999865443334445677754 33333211211 1347999999999987 4554 89999998766433
Q ss_pred ---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 228 ---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 228 ---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.+.......|.|.++..+|+|.|+|.|.|....
T Consensus 160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (210)
T 1lk3_L 160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS 201 (210)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence 011122347999999999999999999996553
No 200
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=5.6e-22 Score=156.41 Aligned_cols=164 Identities=13% Similarity=0.182 Sum_probs=120.0
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVE 269 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~ 269 (384)
.+.+|++++|.|.+.+ +.+.+.|++++..+.... .....+..|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus 14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~ 92 (188)
T 1oll_A 14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 92 (188)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence 5889999999999875 356899999987654211 11224568999999999999999999885432 225567777
Q ss_pred EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
|.. +|.+...+ ...+.+|+.++|.|.+.+ +.+.+.|+++|..+... .. .......|.|.+++.+|+
T Consensus 93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~--~~-------~~~~~~~L~I~~v~~~d~ 161 (188)
T 1oll_A 93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQ--RG-------YGKVQAEFPLGPVTTAHR 161 (188)
T ss_dssp EESCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEE--EE-------ECSSEEEEEEEECCGGGC
T ss_pred ecccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEEEEECCcccccc--cc-------CCCceeEEEECCCCcCCC
Confidence 764 56666544 456789999999999876 45799999998765431 00 112467899999999999
Q ss_pred eEEEEEEEeCCc---ceEEEEEEEEe
Q psy16652 347 GQYACKAANKYG---SAQKEIELFDR 369 (384)
Q Consensus 347 G~Y~C~a~n~~g---~~~~~~~l~v~ 369 (384)
|.|+|.|.|... ..+..+.|.|.
T Consensus 162 G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 162 GTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEEEEECEEETTEECCCCCCEEEEEE
T ss_pred cEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 999999998751 23445667665
No 201
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=1.6e-21 Score=160.76 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=127.4
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+. ..+.+|++|+|.|.+.. +...+.|+|++....... ...+ .........|.|.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~-----------~~~~----~~~~~~~~~L~I~ 67 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLH-----------LIGE----HHDGVSKANFSIG 67 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEE-----------EECB----CCTTCEEEEEEEC
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcce-----------eeee----ccCCCceEEEEee
Confidence 45778877665 67899999999999864 456899999886521100 0000 0112345679999
Q ss_pred ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
+++.+|+|.|+|.+.+... ...+..+.|.|... |.+... +. ..+.+|++++|.|.+.+. .+.+.|+|++.
T Consensus 68 ~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~-p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~ 144 (257)
T 1b6u_A 68 PMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ-PG-PTVLAGESVTLSCSSRSS-YDMYHLSREGE 144 (257)
T ss_dssp SCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECS-SC-TTCBTTCEEEEEEECSSC-CSEEEEEETTS
T ss_pred cCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEcc-CC-CccCCCCEEEEEEeCCCC-CcEEEEEECCc
Confidence 9999999999999975432 23456778888753 333322 11 247899999999999774 46899999998
Q ss_pred cccccCcee-----EeccEEEEcCCCCCCCeEEEEEEEeCCC----CceeeEEEEEEEecCeEEecCC-CcccccCCcEE
Q psy16652 223 AALSTGGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVG----RGMKRNIAVEVEFAPVITINRP-RQGQALQYDAI 292 (384)
Q Consensus 223 ~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~p~~~~~~~-~~~~~~g~~~~ 292 (384)
.+....... .....|.|.+++ |+|.|+|.+.+... ...+..+.|.|..+|.+..+++ ......|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~ 222 (257)
T 1b6u_A 145 AHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRH 222 (257)
T ss_dssp SCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-------------------
T ss_pred ccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEE
Confidence 765432111 124679999998 99999999997532 2346678899998887653322 23345678888
Q ss_pred EEEEEeccCCCeEEEEECCE
Q psy16652 293 LECHVEAYPPPAIVWIKDGV 312 (384)
Q Consensus 293 l~C~~~~~p~~~v~W~~~~~ 312 (384)
|.|.+ |.+.+.+.|...+.
T Consensus 223 l~~~~-~~~~~~~~~~~~~~ 241 (257)
T 1b6u_A 223 LHAAA-EQKLISEEDLNLDL 241 (257)
T ss_dssp --------------------
T ss_pred EEEEE-cchHHHHHHhhhhh
Confidence 88776 55777888876553
No 202
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.88 E-value=8.1e-21 Score=159.76 Aligned_cols=197 Identities=15% Similarity=0.209 Sum_probs=129.2
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L 146 (384)
.+...|....+.+|++|+|.|.+.+.+ .+.+.|++.+.......+.... .... ....+|+.+..+......+|
T Consensus 28 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 107 (282)
T 1qok_A 28 VKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYL 107 (282)
T ss_dssp CEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred EEEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence 345567788899999999999998764 5789999976432111111111 0100 11246787776545567899
Q ss_pred EEeecCCCCCeeEEEEEEEccCc----ceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEec
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNN----KVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYAN 208 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~ 208 (384)
.|.+++.+|+|.|+|.+.+..+. .....+.|.|..++. .....+....+.+|++++|.|.+.
T Consensus 108 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~ 187 (282)
T 1qok_A 108 QLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSAS 187 (282)
T ss_dssp EECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEES
T ss_pred EECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEec
Confidence 99999999999999999865431 122445677765431 111224456789999999999998
Q ss_pred ccCCCeEEEEe--CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 209 GFPAPTISWRR--DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 209 ~~~~~~v~W~~--~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.+ +.+.|++ ++..+.. ..+... ....|.|.+++.+|+|.|+|.+.+...........|.|
T Consensus 188 ~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 188 SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence 888 8999999 4443310 111111 13479999999999999999998754332233345555
Q ss_pred E
Q psy16652 271 E 271 (384)
Q Consensus 271 ~ 271 (384)
.
T Consensus 267 ~ 267 (282)
T 1qok_A 267 K 267 (282)
T ss_dssp C
T ss_pred e
Confidence 4
No 203
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.88 E-value=4e-21 Score=158.55 Aligned_cols=193 Identities=18% Similarity=0.263 Sum_probs=127.5
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC-c----eeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG-S----LIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+.+ .+.+.|++.........+...... . .....+|+.+..+......+|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 3557789999999999998865 578999997543211111111110 0 01124678777655566789999999
Q ss_pred CCCCCeeEEEEEEEcc-CcceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEecccCCCeEE
Q psy16652 152 QETDAGIYKCEVIISL-NNKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS 216 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~ 216 (384)
+.+|+|.|+|.+.+.. .........|.|..++. .....+....+.+|+++.|.|.+.+.+.+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 9999999999998652 11233445777765421 11122445678899999999999998888999
Q ss_pred EEe--CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 217 WRR--DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 217 W~~--~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
|++ ++..+.. ..+... ...+|.|.+++.+|+|.|+|.+.+...........|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999 4443310 111111 234699999999999999999998543333334455553
No 204
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.88 E-value=3.9e-21 Score=158.96 Aligned_cols=182 Identities=16% Similarity=0.295 Sum_probs=123.0
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+............+|+.+.. .....+|.|.+++
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 82 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG--SGTDYSLTISNLE 82 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC--CCCEEEEEEccCC
Confidence 45666677788999999999999998888899999976442222222111111122346776554 4567789999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEecCC------------------ccccCCCceEEeecCceEEEEEEecccC--C
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPP------------------IISDNSTRSVIVSEGQTVYLYCYANGFP--A 212 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~ 212 (384)
.+|+|.|+|.+.+..+........|.|..++ ......+....+.+|+++.|.|.+.+.+ .
T Consensus 83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~ 162 (250)
T 3esu_F 83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSS 162 (250)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGG
T ss_pred hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccC
Confidence 9999999999976544334455567766531 1111223456789999999999998766 6
Q ss_pred CeEEEEeC--CCccccc-----------------CceeEe------ccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 213 PTISWRRD--NSAALST-----------------GGSIYR------GNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 213 ~~v~W~~~--~~~~~~~-----------------~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
+.+.|+++ +..+... .+.... ..+|.|.+++.+|+|.|+|.+.+
T Consensus 163 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 163 SWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp SEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 79999997 3332111 111111 12699999999999999999997
No 205
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=1e-21 Score=154.89 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=124.5
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+.. .+.+|++|+|.|.+.+ +...+.|+|++.... . ...+ .........|.|.+
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~-----~--------~~~~----~~~~~~~~~L~I~~ 63 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFA-----V--------DRPK----PPERINKVKFYIPD 63 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEE-----E--------ECCS----SCTTCCEEEEEESS
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCccc-----c--------cccc----cCCCcceeEEEeCc
Confidence 46788887776 8999999999999865 346899999764310 0 0000 01133456899999
Q ss_pred cCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc
Q psy16652 151 IQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS 226 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~ 226 (384)
++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... + ...+.+|+.++|.|.+.+ +.+.+.|++++..+..
T Consensus 64 v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~-p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~ 140 (188)
T 1oll_A 64 MNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHV 140 (188)
T ss_dssp CCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEE-S-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEE
T ss_pred CCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEEC-C-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccc
Confidence 9999999999999764332 345667788764 3333321 2 345789999999999876 4568999999876654
Q ss_pred cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC--CceeeEEEEEEE
Q psy16652 227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG--RGMKRNIAVEVE 271 (384)
Q Consensus 227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~ 271 (384)
..........|.|.+++.+|+|.|+|.+.|... ...+..+.|.|.
T Consensus 141 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 141 QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred cccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 211122356899999999999999999998642 223555666653
No 206
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.88 E-value=9.1e-22 Score=158.63 Aligned_cols=185 Identities=14% Similarity=0.195 Sum_probs=126.3
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
|.+...+....+.+|++++|.|.+.+.+.+.+.|++.+.......+.............|+.+.. .....+|.|.+++
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG--SGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSCC
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec--cCCEEEEEECCCC
Confidence 45666678888999999999999998888899999976432222122111111112356777764 4567899999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEe---cCCccccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCCCccccc
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNSAALST 227 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~ 227 (384)
.+|+|.|+|.+.+..+........|.|. .+|.+... +....+..|+.+.|.|.+.+.++ +.+.|++++..+...
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~-~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 158 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIF-PPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG 158 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE-CCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeee-CCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence 9999999999976544444555677773 33333321 11222346888999999987544 389999998766542
Q ss_pred C-----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 228 G-----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 228 ~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
. +.......|.|.....+|+|.|+|.|.|....
T Consensus 159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~ 202 (213)
T 3r06_A 159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST 202 (213)
T ss_dssp EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence 1 11122346888888888999999999997543
No 207
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.88 E-value=5.6e-21 Score=155.45 Aligned_cols=187 Identities=16% Similarity=0.217 Sum_probs=117.8
Q ss_pred eCcceeeeccCcEEEEEEeecCCC---ccEEEEEeCCCCCCcccceeccCce------eeeCCceEEeeC-CCCceEEEE
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYADD---YPVIWMKMDTAKKMEPLPISMSGSL------IIHDSRFQLTTD-PETSTYILS 147 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~L~ 147 (384)
+.+++.+.+|++|+|.|.+.+.+. ..|.|+|++... .+.+...+.. .....|...... ...+..+|.
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~---~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 86 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQ---VVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR 86 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCC---EEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEE
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCc---eEEEEeCCeEcccccCccccceEEEecccccCCeEEEE
Confidence 445577899999999999976543 369999977541 1111111111 111234443332 245678999
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
|.+++.+|+|.|+|.+.+.. +.....+.+.+..++. .......+.+|+.+.|.|.+.+ .|.|.+.|++++..+..
T Consensus 87 I~~v~~~D~G~Y~C~a~n~~-~~~~~~v~~~~~~~~~---~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~ 162 (226)
T 4f80_A 87 IHNVTASDSGKYLCYFQDGD-FYEKALVELKVAALGS---DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162 (226)
T ss_dssp ESSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCC---CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred EeeCchHHCeeEEEEEECCC-cEEEEEEEEeecccee---cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence 99999999999999998643 3334444444433322 2244566789999999999977 68999999997654433
Q ss_pred cCc-eeE-e-c---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 227 TGG-SIY-R-G---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 227 ~~~-~~~-~-~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
... ... . + ..+.+..++.+|+|.|+|.|.|..+.. .+...|.|..
T Consensus 163 ~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v~e 213 (226)
T 4f80_A 163 TVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISIAD 213 (226)
T ss_dssp CEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECCCT
T ss_pred CCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEECC
Confidence 222 111 1 1 134445677899999999999998875 5666666643
No 208
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.88 E-value=9.7e-21 Score=155.36 Aligned_cols=183 Identities=16% Similarity=0.231 Sum_probs=122.0
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEEEEEee
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+...+..+.+.+|++|+|.|. .+.+.+.+.|++.........+........ .....|+.+.. ......+|.|.+
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~L~I~~ 79 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQENFSLILEL 79 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSSSBCEEEESS
T ss_pred cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCCceEEEEEec
Confidence 3556677788999999999999 667788999999743221111111111110 11245676654 244567899999
Q ss_pred cCCCCCeeEEEEEEEccCc----ceeeeEEEEEecCCc-----------cccCCCceEEeecCceEEEEEEecccCCCeE
Q psy16652 151 IQETDAGIYKCEVIISLNN----KVSAEVELIVRRPPI-----------ISDNSTRSVIVSEGQTVYLYCYANGFPAPTI 215 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v 215 (384)
++.+|+|.|+|.+.+..+. .......|.|...+. .....+....+.+|+++.|.|.+.+.|.+.+
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i 159 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF 159 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence 9999999999999865321 122345677765442 1112345667899999999999999888999
Q ss_pred EEEeCCCccc--------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 216 SWRRDNSAAL--------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 216 ~W~~~~~~~~--------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
.|++++.... ........ ...|.|.+++.+|+|.|+|.+.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999642110 01111111 2479999999999999999999973
No 209
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.88 E-value=1.8e-21 Score=157.55 Aligned_cols=173 Identities=19% Similarity=0.299 Sum_probs=119.6
Q ss_pred eEEeecCceEEEEEEeccc-CCCeEEEEeCCCcccc---------------c---CceeE----eccEEEEcCCCCCCCe
Q psy16652 192 SVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALS---------------T---GGSIY----RGNILKIPNITKTDRG 248 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~---------------~---~~~~~----~~~~l~i~~~~~~d~G 248 (384)
...+.+|+++.|.|.+.+. +.+.+.|++....... . .+... ....|.|.+++.+|+|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 6778999999999999887 8889999984311000 0 01111 1246999999999999
Q ss_pred EEEEEEEeCCC----CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCC
Q psy16652 249 TYYCVAQNGVG----RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQ 318 (384)
Q Consensus 249 ~Y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~ 318 (384)
.|+|.+.+..+ ........|.|. .+|.+...++......++.++|.|.+.+ .|.+ .+.|+++|..+....
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~ 168 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV 168 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence 99999998765 122345677777 5677776666666667799999999988 5767 899999999886532
Q ss_pred ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
.........+.....+.|.|.....+|.|.|+|.|.|..+..+.++
T Consensus 169 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 169 DTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp ----------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred ecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 2111111111111234588888888899999999999998777654
No 210
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.88 E-value=5.7e-22 Score=164.11 Aligned_cols=188 Identities=15% Similarity=0.250 Sum_probs=124.1
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (384)
...+.+...+..+.+.+|++|+|.|.+.+.+ .+.+.|++++.......+............+|+.+.. .....
T Consensus 32 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~ 109 (252)
T 3bkj_L 32 SSDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG--SGTDF 109 (252)
T ss_dssp --CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEE
T ss_pred ccccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc--cCCEE
Confidence 3456677778888899999999999998766 5799999976432111111111100111245776665 45667
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEe
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRR 219 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~ 219 (384)
+|.|.+++.+|+|.|+|.+.+...........|.|.. +|.+....+. ..+.+|+.++|.|.+.+ .|.+ ++.|++
T Consensus 110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k 188 (252)
T 3bkj_L 110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI 188 (252)
T ss_dssp EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence 8999999999999999999755433333445677754 2332221111 11336889999999987 4544 799999
Q ss_pred CCCccccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 220 DNSAALST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 220 ~~~~~~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++..+... .+.......|.|.++..+|+|.|+|.|.|....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 98765432 011122346899999999999999999996544
No 211
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.88 E-value=4e-22 Score=156.81 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=122.8
Q ss_pred ceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeC-CCCceEEEEEeecCCC
Q psy16652 81 EQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTD-PETSTYILSIKEIQET 154 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~L~i~~~~~~ 154 (384)
.+.+.+|++++|.|.+.+.+.+.+.|++++... .+....... ....++.+... ...+..+|.|.+++.+
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~-----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~ 78 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIK-----ILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIE 78 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCE-----EEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGG
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccc-----eEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHH
Confidence 345799999999999988788899999987531 111000000 11233333221 0223557999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 234 (384)
|+|.|+|.+.+.. ..+.|.|...+. +....+.+|+.+.|.|.+.+.|.+.+.|++++..+ ....
T Consensus 79 D~G~Y~C~~~~~~-----~~~~l~V~~~~~-----~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~ 142 (184)
T 2ny1_B 79 DSDTYICEVEDQK-----EEVQLLVFGLTA-----NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGG 142 (184)
T ss_dssp GCEEEEEEETTEE-----EEEEEEEEEEEE-----SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEES
T ss_pred HCEEEEEEEEcCC-----CcEEEEEEEecC-----CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCc
Confidence 9999999986432 245566653221 22346789999999999988899999999987654 3356
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 275 (384)
..|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|...|.
T Consensus 143 ~~L~i~~v~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 143 KTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQK 182 (184)
T ss_dssp SEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCC
T ss_pred eEEEEecCCcCCCeEEEEEEEECCceE-EEEEEEEEEecCC
Confidence 789999999999999999999876654 6777887776653
No 212
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.88 E-value=3.7e-21 Score=159.64 Aligned_cols=196 Identities=17% Similarity=0.220 Sum_probs=129.3
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-c----CceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-S----GSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++|+|.|.+.+.+ ...+.|++.........+.... . .......+|+.+..+......+|.|.+
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 87 (256)
T 3umt_A 8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS 87 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence 34556689999999999998754 6789999965432212111111 0 001123468887765556678899999
Q ss_pred cCCCCCeeEEEEEEEcc---CcceeeeEEEEEec----------------CCccccCCCceEEeecCceEEEEEEecccC
Q psy16652 151 IQETDAGIYKCEVIISL---NNKVSAEVELIVRR----------------PPIISDNSTRSVIVSEGQTVYLYCYANGFP 211 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~----------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 211 (384)
++.+|+|.|+|.+.+.. .........|.|.. ++.+. ..+....+.+|++++|.|.+.+.+
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~ 166 (256)
T 3umt_A 88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT-QSPSSLSASLGERVSITCRASQDI 166 (256)
T ss_dssp CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE-EECSEEEECTTCCEEEEEEESSCC
T ss_pred CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE-cCCCeEEEECCCCEEEEEEEecCC
Confidence 99999999999997541 23334556777764 22222 234557789999999999999888
Q ss_pred CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEec
Q psy16652 212 APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA 273 (384)
Q Consensus 212 ~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 273 (384)
.+.+.|++... ... ...+... ....|.|.+++.+|+|.|+|.+.+...........|.|..+
T Consensus 167 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~ 246 (256)
T 3umt_A 167 GSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA 246 (256)
T ss_dssp TTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred CcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence 88999998532 111 0011111 12369999999999999999999865443344566666554
Q ss_pred C
Q psy16652 274 P 274 (384)
Q Consensus 274 p 274 (384)
+
T Consensus 247 ~ 247 (256)
T 3umt_A 247 A 247 (256)
T ss_dssp -
T ss_pred C
Confidence 4
No 213
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.88 E-value=2.5e-21 Score=155.97 Aligned_cols=175 Identities=16% Similarity=0.266 Sum_probs=121.5
Q ss_pred CceEEeecCceEEEEEEecccC---CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCe
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP---APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRG 248 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~---~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G 248 (384)
+....+.+|+++.|.|.+.+.+ .+.+.|++++. .+. ...+... ....|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 86 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA 86 (212)
T ss_dssp CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence 4556789999999999998876 36899998642 210 0111111 1237999999999999
Q ss_pred EEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC-CC-eEEEEECCEEecCCCceee
Q psy16652 249 TYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP-PP-AIVWIKDGVQIMNNQHYSV 322 (384)
Q Consensus 249 ~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~~~~~~~~~~~~ 322 (384)
.|+|.+.+..+........|.|. .+|.+...++......|+.++|.|.+.|.+ ++ .+.|+++|..+..+.....
T Consensus 87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~ 166 (212)
T 1q0x_L 87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ 166 (212)
T ss_dssp EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence 99999998765332334556663 577777655555556788999999998854 43 8999999998865422111
Q ss_pred -eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652 323 -SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 323 -~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
.....+.....+.|.|.....+|.|.|+|.|.|.......++
T Consensus 167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v 209 (212)
T 1q0x_L 167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL 209 (212)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence 111111112345688999999999999999999987655544
No 214
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.88 E-value=6.5e-21 Score=158.14 Aligned_cols=200 Identities=14% Similarity=0.232 Sum_probs=133.4
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCce
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETST 143 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~ 143 (384)
.++.+...+..+.+.+|++|+|.|.+.+. +...+.|++.........+.... .... ....+|+.+..+.....
T Consensus 5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 45677778888899999999999999873 56789999976443222222211 1111 11246888876556778
Q ss_pred EEEEEeecCCCCCeeEEEEEEEc-----------cCcceeeeEEEEEecCCc--------------cccCCCceEEeecC
Q psy16652 144 YILSIKEIQETDAGIYKCEVIIS-----------LNNKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEG 198 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g 198 (384)
.+|.|.+++.+|+|.|+|.+.+. ..........|.|..++. .....+....+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 89999999999999999999764 123344556777776422 11233556778999
Q ss_pred ceEEEEEEecccCC-CeEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 199 QTVYLYCYANGFPA-PTISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 199 ~~~~l~C~~~~~~~-~~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
++++|.|.+.+.+. +.+.|++.. ..... ..+... ....|.|.+++.+|+|.|+|.+.+...
T Consensus 165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 99999999988765 799999842 22110 111111 123699999999999999999998544
Q ss_pred CceeeEEEEEE
Q psy16652 260 RGMKRNIAVEV 270 (384)
Q Consensus 260 ~~~~~~~~l~v 270 (384)
........|.|
T Consensus 245 ~~~g~gt~l~V 255 (256)
T 3juy_B 245 YTFGQGTKLER 255 (256)
T ss_dssp CEECCCEEEEE
T ss_pred ceEcCCEEEEE
Confidence 33333334443
No 215
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.87 E-value=1.8e-21 Score=160.78 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=118.3
Q ss_pred CceEEeecCceEEEEEEecccCCCe-----EEEEeCCCcccccC---------------cee-------EeccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSAALSTG---------------GSI-------YRGNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~-----v~W~~~~~~~~~~~---------------~~~-------~~~~~l~i~~~ 242 (384)
+....+.+|+++.|.|.+.+.|.+. +.|++++....... +.. .....|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 4556788999999999998776654 99999754322100 000 01235999999
Q ss_pred CCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCce
Q psy16652 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHY 320 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~ 320 (384)
+.+|+|.|+|.+.+..+.. ...+.|.|..+|.+...+.. ....|+.+.|.|.+.| +|.+ .+.|+++|..+......
T Consensus 90 ~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~ 167 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEI 167 (248)
T ss_dssp CGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEE
T ss_pred CHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCcccc
Confidence 9999999999999976653 66788999999988776553 3456778889999998 8988 99999999654322110
Q ss_pred -------eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc--eEEEEEEEE
Q psy16652 321 -------SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS--AQKEIELFD 368 (384)
Q Consensus 321 -------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v 368 (384)
.......+.....+.|.|.....+|.|.|+|.|.|..+. ....+.|.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 168 SEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred ccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 111111122223456888888889999999999999987 455666666
No 216
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.87 E-value=3e-21 Score=155.57 Aligned_cols=177 Identities=19% Similarity=0.303 Sum_probs=124.2
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.+.+.+.|++....... ..+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY 87 (213)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence 4556789999999999999888889999984321110 111111 1237999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEE---EecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCCC--ceeeee
Q psy16652 252 CVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQ--HYSVSH 324 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~--~~~~~~ 324 (384)
|.+.+..+........|.| ..+|.+...+.......|+.+.|.|.+.+.+++ .+.|+++|..+.... ......
T Consensus 88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 167 (213)
T 3r06_A 88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQD 167 (213)
T ss_dssp EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCC
T ss_pred EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCcee
Confidence 9999875544344566777 567888776766666778889999999886543 899999999886542 111111
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
...+.....+.|.|.....+|.|.|+|.|.|..........+
T Consensus 168 ~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~~ 209 (213)
T 3r06_A 168 SKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKTL 209 (213)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEE
T ss_pred CCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEec
Confidence 111111223468888888889999999999987655444333
No 217
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.87 E-value=5.8e-21 Score=158.35 Aligned_cols=185 Identities=15% Similarity=0.285 Sum_probs=129.0
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCccccee-ccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+... .........+|+.+..+......+|.|.++
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v 83 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV 83 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence 3566667778899999999999998888889999996643322222211 222333456788876555677889999999
Q ss_pred CCCCCeeEEEEEEEccCc---ceeeeEEEEEec--------------------CCccccCCCceEEeecCceEEEEEEec
Q psy16652 152 QETDAGIYKCEVIISLNN---KVSAEVELIVRR--------------------PPIISDNSTRSVIVSEGQTVYLYCYAN 208 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~--------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~ 208 (384)
+.+|+|.|+|.+.+..+. .....+.|.|.. ++.+. ..+....+.+|++++|.|.+.
T Consensus 84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~ 162 (256)
T 3tf7_C 84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQT 162 (256)
T ss_dssp CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEEC
T ss_pred CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEcC
Confidence 999999999999865432 223345677664 22222 335566788999999999998
Q ss_pred ccCCCeEEEEeCCCccccc-----------------Ccee-----EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 209 GFPAPTISWRRDNSAALST-----------------GGSI-----YRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 209 ~~~~~~v~W~~~~~~~~~~-----------------~~~~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
+. .+.+.|++........ .+.. .....|.|.+++.+|+|.|+|.+.|..+
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g 234 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence 75 6789999843211100 0000 1234799999999999999999998654
No 218
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.87 E-value=6.2e-22 Score=171.82 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=137.6
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++...... .. ........+|.|.+
T Consensus 157 ~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~-------------~~-----~~~~~~~~~L~i~~ 218 (347)
T 2ifg_A 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-------------VM-----KSGGLPSLGLTLAN 218 (347)
T ss_dssp CCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-------------EC-----CCCCSSEEEEEEES
T ss_pred CCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecc-------------cc-----cceecccceEEEee
Confidence 4788888888889999999999999998888899999987642110 00 01134566899999
Q ss_pred cCCCCCe-eEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc
Q psy16652 151 IQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229 (384)
Q Consensus 151 ~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~ 229 (384)
++.+|+| .|+|.+.+.. +..+..+.|.|..+|.+. .....+|+.+.|.|.+.|.|.|.+.|++++..+.....
T Consensus 219 v~~~D~G~~Y~C~a~n~~-g~~~~~~~l~V~~~P~i~-----~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~ 292 (347)
T 2ifg_A 219 VTSDLNRKNVTCWAENDV-GRAEVSVQVNVSFPASVQ-----LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSF 292 (347)
T ss_dssp CCSTTTTCCEEECCEETT-EECCEEECCCCBEEEEEE-----ECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSS
T ss_pred CChHHCCCeEEEEEEcCC-CCEEEEEEEEEcCCCeee-----eccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcc
Confidence 9999999 9999998664 444666777776666641 11245789999999999999999999999887764433
Q ss_pred eeE-----------eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 230 SIY-----------RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 230 ~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
... ..++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P 347 (347)
T 2ifg_A 293 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNP 347 (347)
T ss_dssp EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECSCCCC
T ss_pred eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce-eeEEEEEecCCC
Confidence 221 24579999999999999999999998875 677777776554
No 219
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.87 E-value=8.3e-22 Score=159.95 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=120.6
Q ss_pred EEeecCceEEEEEEecccCC-----CeEEEEeCCCcccc-------------cCceeE-------eccEEEEcCCCCCCC
Q psy16652 193 VIVSEGQTVYLYCYANGFPA-----PTISWRRDNSAALS-------------TGGSIY-------RGNILKIPNITKTDR 247 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~-------------~~~~~~-------~~~~l~i~~~~~~d~ 247 (384)
+.+.+|+++.|.|.+.+.+. +.+.|++++..... ..+... .+..|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 45789999999999877643 68999998754310 111111 145799999999999
Q ss_pred eEEEEEEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEE-CCEEecCCCceee
Q psy16652 248 GTYYCVAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIK-DGVQIMNNQHYSV 322 (384)
Q Consensus 248 G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~-~~~~~~~~~~~~~ 322 (384)
|.|+|.+.+.... +..+.|.|..+ |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++ ++..+..... .
T Consensus 85 G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~--~ 159 (222)
T 4i0k_A 85 GSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT--T 159 (222)
T ss_dssp SCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE--E
T ss_pred EEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc--e
Confidence 9999999985322 44455666544 5555433 3466789999999999 889999999999 4544432221 1
Q ss_pred eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCCccCCc
Q psy16652 323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPI 380 (384)
Q Consensus 323 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~ 380 (384)
..... .......|.|.+++.+|.|.|+|.|.|..|....++.|.|.++|-....++-
T Consensus 160 ~~~~~-~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~ 216 (222)
T 4i0k_A 160 SQMAN-ERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPETG 216 (222)
T ss_dssp EEEEC-TTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----------
T ss_pred eEEcC-CCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCccC
Confidence 11111 1112345889999999999999999999999999999999988755444433
No 220
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.87 E-value=3.6e-23 Score=179.45 Aligned_cols=219 Identities=14% Similarity=0.192 Sum_probs=131.2
Q ss_pred CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecC-CC-c
Q psy16652 25 QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYA-DD-Y 102 (384)
Q Consensus 25 ~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~ 102 (384)
.+..+|+|.+++.+|+|.|.|.+........... .+........+|.+...+....+.+|+.++|.|.+.+. |. +
T Consensus 76 ~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~---~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 152 (344)
T 1za6_B 76 ASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGT---LVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV 152 (344)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEETTTTCEECCCE---EEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCC
T ss_pred CCEEEEEECCCCcccCEEEEEEEecCcceecCcE---EEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCe
Confidence 3557999999999999999999876311000000 00000112345666554544556899999999999875 53 7
Q ss_pred cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEEE---
Q psy16652 103 PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVELI--- 178 (384)
Q Consensus 103 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~--- 178 (384)
.+.|++++.... ..........+++|... ..|.|.+++.+| |.|+|.+.+..+.. ....+.+.
T Consensus 153 ~v~W~k~g~~~~-----~~~~~~~~~~~~~~~~~-------s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~ 219 (344)
T 1za6_B 153 TVSWNSGALTSG-----VHTFPAVLQSSGLYSLS-------SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCD 219 (344)
T ss_dssp CEEETTTTBCTT-----EEECCCEECTTSCEEEE-------EEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-
T ss_pred EEEEecCCccCc-----eeECCCeECCCCCEEEE-------EEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccc
Confidence 999999775421 00011111223344333 369999998888 99999998765432 12222111
Q ss_pred -------------------EecCCccccCCCceEEeecCceEEEEEEeccc-C-CCeEEEEeCCCcccccCc--------
Q psy16652 179 -------------------VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P-APTISWRRDNSAALSTGG-------- 229 (384)
Q Consensus 179 -------------------v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~-------- 229 (384)
+..+|.+....+... ...|..+.|.|.+.|. | .+.+.|++++..+.....
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~ 298 (344)
T 1za6_B 220 KTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD 298 (344)
T ss_dssp -------------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTT
T ss_pred cccccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCC
Confidence 112333222111111 2246679999999884 4 358999999987643211
Q ss_pred -eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 230 -SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 230 -~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.......|.|.....+|+|.|+|.|.|....
T Consensus 299 g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 299 GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp SCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred CcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 1112235667666667899999999996543
No 221
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=2.7e-21 Score=160.42 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=121.6
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+....+.+|++|+|.|.+.+.+ .+.+.|++.+.......+........ .....|+.+..+......+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (257)
T 1f3r_B 7 SGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQ 86 (257)
T ss_dssp ECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCC
T ss_pred CCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCC
Confidence 4456789999999999998764 67899999753211111111111110 01246888776545677899999999
Q ss_pred CCCCeeEEEEEEEccC--------cceeeeEEEEEecCCc--------------cccCCCceEEeecCceEEEEEEeccc
Q psy16652 153 ETDAGIYKCEVIISLN--------NKVSAEVELIVRRPPI--------------ISDNSTRSVIVSEGQTVYLYCYANGF 210 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~~~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~ 210 (384)
.+|+|.|+|.+.+..+ ........|.|..++. .....+....+.+|++++|.|.+.+.
T Consensus 87 ~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 166 (257)
T 1f3r_B 87 TDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQN 166 (257)
T ss_dssp TTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSC
T ss_pred cccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCc
Confidence 9999999999986532 1122445777775431 11122345568899999999999888
Q ss_pred CCCeEEEEe--CCCcccc------------cCcee----EeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 211 PAPTISWRR--DNSAALS------------TGGSI----YRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 211 ~~~~v~W~~--~~~~~~~------------~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
+.+.+.|++ ++..+.. ..+.. .....|.|.+++.+|+|.|+|.+.|..
T Consensus 167 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 167 INNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG 232 (257)
T ss_dssp CBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred CCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence 888999999 4443310 11111 112479999999999999999999853
No 222
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.87 E-value=5e-21 Score=158.59 Aligned_cols=195 Identities=17% Similarity=0.223 Sum_probs=129.5
Q ss_pred eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..|....+.+|++|+|.|.+.+.+ .+.+.|++.+.......+.... .+. .....+|+.+..+......+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 345667789999999999997764 5789999965321111111110 000 011246787776545667899999
Q ss_pred ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCC-----eEEEEe-
Q psy16652 150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-----TISWRR- 219 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~W~~- 219 (384)
+++.+|+|.|+|.+.+..+ ......+.|.|..++.+. ..+....+.+|++++|.|.+.+.+.+ .+.|++
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELT-QTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEE-EECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEE-ecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 9999999999999986533 122345677777665443 22455678999999999999887764 899999
Q ss_pred -CCCcccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 220 -DNSAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 220 -~~~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
++..+.. ..+... ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus 164 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 164 KPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp CTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred CCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 4543310 111111 1247999999999999999999985433333344565543
No 223
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.87 E-value=7.5e-22 Score=158.86 Aligned_cols=181 Identities=15% Similarity=0.228 Sum_probs=123.4
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+..++ ...+.+|++|+|.|.+. +...+.|++.........+.............|+.+.. .....+|.|.+++.
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 77 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK--SGNTASLTVSGLQT 77 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEEESCCG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc--cCCEEEEEECCCCh
Confidence 344445 77789999999999998 77899999975332212121111111112346777665 55678899999999
Q ss_pred CCCeeEEEEEEEccC-cceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc
Q psy16652 154 TDAGIYKCEVIISLN-NKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS 226 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~ 226 (384)
+|+|.|+|.+.+..+ ......+.|.|. .+|.+.... ....+.+|+.+.|.|.+.+. +.+.+.|++++..+..
T Consensus 78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 156 (211)
T 3tv3_L 78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFP-PSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKA 156 (211)
T ss_dssp GGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEEC-CCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred hHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecC-CchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCC
Confidence 999999999987655 245566778777 334333221 11223369999999999874 3468999999876643
Q ss_pred c----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 227 T----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 227 ~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
. .+.......|.|..+..+|+|.|+|.|.|..+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~ 200 (211)
T 3tv3_L 157 GVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 200 (211)
T ss_dssp TEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred CcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence 1 111223357899999889999999999997643
No 224
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.87 E-value=3.8e-21 Score=154.99 Aligned_cols=165 Identities=20% Similarity=0.294 Sum_probs=117.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--cccc------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AALS------------TGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.|.+.+.|+++.. .... ..+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (213)
T 3nl4_L 8 PASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECADAATYY 87 (213)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChHHCEEEE
Confidence 455778999999999999988888999998531 1100 111111 1237999999999999999
Q ss_pred EEEEeCCCC--ceeeEEEEEE---EecCeEEecCCCcccccCCcEEEEEEEec-cCCCeEEEEECCEEecCCCceeeee-
Q psy16652 252 CVAQNGVGR--GMKRNIAVEV---EFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSH- 324 (384)
Q Consensus 252 C~~~~~~~~--~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~- 324 (384)
|.+.+..+. .......+.| ..+|.+...++...+..|+.++|.|.+.+ .|.+.+.|+++|..+..........
T Consensus 88 C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~~~~~~~ 167 (213)
T 3nl4_L 88 CQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQ 167 (213)
T ss_dssp EEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEEEEECCC
T ss_pred EecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCeecccCcc
Confidence 999987653 2233445555 45677766666666778999999999998 8989999999999886432111110
Q ss_pred -eeccCccccceEEEeecCCCCCeEEEEEEE
Q psy16652 325 -FATSDEFSDTSLRVITIERRQFGQYACKAA 354 (384)
Q Consensus 325 -~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 354 (384)
...+.....+.|.|..+..+|.|.|+|.|.
T Consensus 168 ~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 168 NSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred cCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 011111224679999999999999999999
No 225
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.87 E-value=8.7e-21 Score=155.90 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=119.8
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+.............|+.+.. .....+|.|.+++.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG--SGTDFTLSINSVET 80 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEEEEESSCCG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec--CCCEEEEEECCCCh
Confidence 4666778888999999999999988878899999976432111111111100001245777654 44567899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCc------------cccCCCceEEeecCceEEEEEEecccC--CCeEEEEe
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APTISWRR 219 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~ 219 (384)
+|+|.|+|.+.+...........|.|..++. .....+....+.+|++++|.|.+.+.+ .+.+.|++
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 9999999999755332233456777766542 111112224588999999999998765 46899998
Q ss_pred CC--Cccc----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 220 DN--SAAL----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 220 ~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+. ..+. ...+.... ...|.|.+++.+|+|.|+|.+.+.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 53 2210 01111111 238999999999999999999873
No 226
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.87 E-value=1.9e-20 Score=158.17 Aligned_cols=199 Identities=15% Similarity=0.212 Sum_probs=126.0
Q ss_pred eeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEe
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+....+.+|++|+|.|.+.+.+ ...+.|++.........+.... .+.. ....+|+.+..+......+|.|.
T Consensus 27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 106 (291)
T 2gki_A 27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS 106 (291)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence 346678899999999999998755 5789999976432111111111 0100 01236776665434557899999
Q ss_pred ecCCCCCeeEEEEEEEccCc----ceeeeEEEEEecC---------------CccccCCCceEEeecCceEEEEEEeccc
Q psy16652 150 EIQETDAGIYKCEVIISLNN----KVSAEVELIVRRP---------------PIISDNSTRSVIVSEGQTVYLYCYANGF 210 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 210 (384)
+++.+|+|.|+|.+.+...+ .....+.|.|..+ +......+....+.+|++++|.|.+.+.
T Consensus 107 ~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 186 (291)
T 2gki_A 107 SLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQS 186 (291)
T ss_dssp SCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSC
T ss_pred cCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCc
Confidence 99999999999999865311 1223456777651 1111123456678999999999999887
Q ss_pred CCC------eEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEE
Q psy16652 211 PAP------TISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266 (384)
Q Consensus 211 ~~~------~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 266 (384)
+.+ .+.|+++. ..... ..+... ....|.|.+++.+|+|.|+|.+.+..........
T Consensus 187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt 266 (291)
T 2gki_A 187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT 266 (291)
T ss_dssp CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCE
Confidence 665 89999963 21110 111111 1237999999999999999999985322222234
Q ss_pred EEEEEecCe
Q psy16652 267 AVEVEFAPV 275 (384)
Q Consensus 267 ~l~v~~~p~ 275 (384)
.|.|+..+.
T Consensus 267 ~l~v~~~~~ 275 (291)
T 2gki_A 267 KLEIKHHHH 275 (291)
T ss_dssp EEEEECC--
T ss_pred EEEEEeeEc
Confidence 555555443
No 227
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.87 E-value=6.1e-21 Score=159.53 Aligned_cols=180 Identities=16% Similarity=0.238 Sum_probs=123.5
Q ss_pred CceEEeecCceEEEEEEec---ccCCCeEEEEeCCCccccc------------------CceeE------eccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYAN---GFPAPTISWRRDNSAALST------------------GGSIY------RGNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~---~~~~~~v~W~~~~~~~~~~------------------~~~~~------~~~~l~i~~~ 242 (384)
+....+.+|+++.|.|.+. +.+.+.+.|++.+...... .+... .+..|.|.++
T Consensus 12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 91 (268)
T 3mj6_A 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91 (268)
T ss_dssp CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSC
T ss_pred CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCC
Confidence 4567789999999999987 5666789999966533211 11111 1257999999
Q ss_pred CCCCCeEEEEEEEeCCCCc-eeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE---eccCCCeEEEEEC-CEEecCC
Q psy16652 243 TKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV---EAYPPPAIVWIKD-GVQIMNN 317 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~-~~~~~~~ 317 (384)
+.+|+|.|+|.+.+..+.. ....+.|.|. | ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++ +......
T Consensus 92 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~---~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~ 166 (268)
T 3mj6_A 92 QKADEGIYTCEIRLKNESMVMKKPVELWVL--P---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEE 166 (268)
T ss_dssp CGGGCEEEEEEEEETTCCCEEEEEEEEEEE--C---CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCE
T ss_pred CHhHCEEEEEEEEecCCcceEEEEEEEEEe--c---cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcce
Confidence 9999999999999865543 2444555443 2 12345667899999999999 6778999999994 3211110
Q ss_pred -----------------Cceeeeee-eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecC
Q psy16652 318 -----------------QHYSVSHF-ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTG 374 (384)
Q Consensus 318 -----------------~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~ 374 (384)
.++..... ..........|.|.+++.+|+|.|+|.|.|..|....++.|.|...++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~ 241 (268)
T 3mj6_A 167 TVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQ 241 (268)
T ss_dssp EEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---
T ss_pred eEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCe
Confidence 11100000 0001124678999999999999999999999999999999998665543
No 228
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.87 E-value=1.9e-21 Score=157.36 Aligned_cols=184 Identities=16% Similarity=0.242 Sum_probs=123.5
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC-CCccEEEEEeCCCCCCcccceeccCce-e---eeCCceEEeeCCCCceEEEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA-DDYPVIWMKMDTAKKMEPLPISMSGSL-I---IHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~ 147 (384)
|.+..++ ...+.+|++|+|.|.+.+. +.+.+.|++.........+......+. . ...+|+.+.. .....+|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~ 78 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS--SGADRYLS 78 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE--ETTEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec--CCceEEEE
Confidence 3555556 7789999999999999988 888999999654322222222111110 1 1235777665 55678899
Q ss_pred EeecCCCCCeeEEEEEEEccC----cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652 148 IKEIQETDAGIYKCEVIISLN----NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW 217 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W 217 (384)
|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.... .......|+.+.|.|.+.+ .|.+ .+.|
T Consensus 79 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~-~~~~~~~~~~v~L~C~~~g~~p~~~~v~W 157 (218)
T 3s96_B 79 ISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP-PSSEELKENKATLVCLISNFSPSGVTVAW 157 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC-CCHHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred EccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC-CCcccccCCcEEEEEEECcccCCCeEEEE
Confidence 999999999999999987654 2344556787774 33332211 1122346789999999987 5666 8999
Q ss_pred EeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++++..+.... +.......|.|.....+|+|.|+|.|.|..+.
T Consensus 158 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~ 209 (218)
T 3s96_B 158 KANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT 209 (218)
T ss_dssp EETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred EECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence 99987765421 11122345888888888999999999997643
No 229
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.87 E-value=4.7e-21 Score=154.18 Aligned_cols=172 Identities=16% Similarity=0.283 Sum_probs=124.7
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCceeE----eccEEEEcCCCCCCCeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSIY----RGNILKIPNITKTDRGTYYCV 253 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 253 (384)
...+.+|+++.|.|.+. +.+.+.|++.. .... ...+... ....|.|.+++.+|+|.|+|.
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 67789999999999998 77899999942 2211 0111111 134799999999999999999
Q ss_pred EEeCCC-CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECCEEecCCCceeeee-e
Q psy16652 254 AQNGVG-RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDGVQIMNNQHYSVSH-F 325 (384)
Q Consensus 254 ~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~-~ 325 (384)
+.+..+ ........|.|. .+|.+...+....+..|+.++|.|.+.|.+ .+.+.|+++|..+.......... .
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~ 166 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ 166 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence 999876 233555677777 678887766666666899999999999853 46899999999886532111111 1
Q ss_pred eccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 326 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
..+.....+.|.|..+..+|.|.|+|.|.|..+...+++.
T Consensus 167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 167 SNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp TTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred CCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 1111122356889999889999999999999988777664
No 230
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=1.5e-20 Score=154.41 Aligned_cols=181 Identities=17% Similarity=0.269 Sum_probs=123.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
.+...+....+.+|++|+|.|.+.+.+ .+.+.|+++........+.............|+.+.. .....+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 80 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG--SRTDFTLIID 80 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--ETTEEEEEES
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe--cCCeEEEEEc
Confidence 456667778899999999999998876 7789999975332111111111000011245777765 4567789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc-----cccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCC-
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI-----ISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDN- 221 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~- 221 (384)
+++.+|+|.|+|.+.+..+........|.|..++. .....+....+.+|+++.|.|.+.+.|. +.+.|+++.
T Consensus 81 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~ 160 (240)
T 1moe_A 81 PVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRP 160 (240)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred CCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECC
Confidence 99999999999999865433345566777776432 2212244567899999999999988763 589999963
Q ss_pred -Cccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 222 -SAAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 222 -~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
.... ...+.... ...|.|.+++.+|+|.|+|.|.+
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 161 EQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp TSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 2210 00111111 14799999999999999999985
No 231
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.86 E-value=1.8e-20 Score=152.05 Aligned_cols=192 Identities=16% Similarity=0.272 Sum_probs=124.6
Q ss_pred eeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccC------ceeeeCCceEEeeCC-CCce
Q psy16652 76 SYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSG------SLIIHDSRFQLTTDP-ETST 143 (384)
Q Consensus 76 ~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~ 143 (384)
..++..+.+.+|++++|.|.+.+.+ ...+.|++++.. +.....+ ......+|+.+..+. ..+.
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~-----v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKN-----IIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGN 79 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEE-----EEEEETTEECSSSSCGGGSSSEEECHHHHTTTE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcE-----EEEEeCCccccccccccccCceEEccccccCCE
Confidence 3445566789999999999986544 348999997521 1111111 001123455544321 3456
Q ss_pred EEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCc
Q psy16652 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223 (384)
Q Consensus 144 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~ 223 (384)
.+|.|.+++.+|+|.|+|.+.+ .+.....+.|.|..++..... .....+.+|+.+.|.|.+.|.|.+.+.|++++..
T Consensus 80 ~~L~I~~v~~~D~G~Y~C~~~~--~~~~~~~~~l~V~~~~~~~~~-~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~ 156 (222)
T 3sbw_C 80 AALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQ-RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQ 156 (222)
T ss_dssp EEEEESSCCGGGCEEEEEEEES--SSEEEEEEEEEEEBCCCCCEE-EEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCC
T ss_pred EEEEEcCcccccCeEEEEEEEe--CCCceeEEEEEEECCCCCCCc-eeeeeecCCCcEEEEEEecCCCCCeEEEEECCCc
Confidence 7899999999999999999985 455666788888866543311 1112567899999999999999999999998443
Q ss_pred ccccCcee-E---ecc---EEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeE
Q psy16652 224 ALSTGGSI-Y---RGN---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276 (384)
Q Consensus 224 ~~~~~~~~-~---~~~---~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~ 276 (384)
........ . ... ...+..+..+|+|.|+|.|.|..+.. ...+.|.|..+|..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~-~~~~~l~v~~~p~~ 215 (222)
T 3sbw_C 157 VLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE-NHTAELVIPELPLA 215 (222)
T ss_dssp EECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCCC---
T ss_pred eecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccce-eeEEEEEecCCccc
Confidence 32221111 0 111 12222345689999999999998875 67788888766653
No 232
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.86 E-value=1.3e-22 Score=166.01 Aligned_cols=187 Identities=16% Similarity=0.241 Sum_probs=102.1
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
...+.+...+....+.+|++|+|.|.+.+.+.+.+.|++++.......+............+|+.+.. .....+|.|.
T Consensus 21 ~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~ 98 (233)
T 3bqu_C 21 GAETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG--YGTDFVFTIE 98 (233)
T ss_dssp --CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE--EEEEEEEC--
T ss_pred ccceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec--cCCEEEEEEC
Confidence 34566777788888999999999999988766789999976432111111111110011134444332 3345689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAA 224 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~ 224 (384)
+++.+|+|.|+|.+.+..+........|.|.. +|.+....+. ....+|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus 99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 177 (233)
T ss_dssp ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC----
T ss_pred CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECCeeC
Confidence 99999999999999754432233334455543 3333221111 112369999999999874 443 79999998765
Q ss_pred ccc-----------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 225 LST-----------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 225 ~~~-----------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
... ++.......|.|.....+|+|.|+|.|.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 433 01112234788999989999999999998643
No 233
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.86 E-value=2.1e-21 Score=162.50 Aligned_cols=211 Identities=16% Similarity=0.243 Sum_probs=122.3
Q ss_pred eecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCC
Q psy16652 35 VTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKK 114 (384)
Q Consensus 35 ~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~ 114 (384)
.+..|.+.|.|.+....+.. .....+.+...+..+.+.+|++|+|.|.+.+ +...+.|+|......
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~-------------~~~~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~ 68 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGS-------------GGGGGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNE 68 (270)
T ss_dssp --------------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCC
T ss_pred chhhhHHHHHHHHhccCCcc-------------ccccceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCC
Confidence 45789999999876532211 1223456777788888999999999999865 667899999654322
Q ss_pred CcccceeccCceeeeC---C-ceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEcc---CcceeeeEEEEEec------
Q psy16652 115 MEPLPISMSGSLIIHD---S-RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL---NNKVSAEVELIVRR------ 181 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------ 181 (384)
...+............ + |+.+... .....+|.|.+++.+|+|.|+|.+.+.. .......+.|.|..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~ 147 (270)
T 3qib_D 69 FKFLINFQNQEVLQQIDMTEKRFSAECP-SNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVF 147 (270)
T ss_dssp EEEEEEEETTEEEEECHHHHHHEEEECC-TTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCB
T ss_pred cEEEEEECCCCceecCCccCCcEEEEeC-CCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccccccc
Confidence 2222222111111111 1 7776653 4567899999999999999999997432 22333455677765
Q ss_pred CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------------CceeEeccEEEEcCCCC
Q psy16652 182 PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------------GGSIYRGNILKIPNITK 244 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~ 244 (384)
+|.+....+....+..|+.+.|.|.+.+ .|.+ .+.|++++..+... .+.......|.|.....
T Consensus 148 ~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~ 227 (270)
T 3qib_D 148 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFW 227 (270)
T ss_dssp CCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHH
T ss_pred CCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHh
Confidence 2322211112222345999999999987 6666 89999998766432 12222234678888877
Q ss_pred CC-CeEEEEEEEeCCCC
Q psy16652 245 TD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 245 ~d-~G~Y~C~~~~~~~~ 260 (384)
+| +|.|+|.+.|....
T Consensus 228 ~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 228 QNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp HSTTCEEEEEEEECCBC
T ss_pred ccCCCeEEEEEEecCCC
Confidence 77 99999999986543
No 234
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=5.1e-21 Score=156.51 Aligned_cols=171 Identities=12% Similarity=0.169 Sum_probs=122.1
Q ss_pred EeecCceEEEEEEecccCCCeEEEEeCCCcccccC---ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEE
Q psy16652 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG---GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVE 269 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~ 269 (384)
.+.+|++++|.|.+.+ +...+.|+|++..+.... ........|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.
T Consensus 17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~ 95 (242)
T 1p6f_A 17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV 95 (242)
T ss_dssp EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence 6889999999999865 456899999987553211 11123457999999999999999999875332 225567777
Q ss_pred EEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+++|..+... .. .......|.|.+++.+|+
T Consensus 96 V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~--~~-------~~~~~~~l~I~~v~~~d~ 164 (242)
T 1p6f_A 96 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ--RG-------YGKVQAEFPLGPVTTAHR 164 (242)
T ss_dssp EECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEE--EE-------ECSSEEEEEEEECCGGGC
T ss_pred eecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCcc--cc-------CCCceEEEEeCCCccccC
Confidence 764 56666544 3567899999999999764 4699999998765431 00 112467899999999999
Q ss_pred eEEEEEEEeCC---cceEEEEEEEEeeeecCCc
Q psy16652 347 GQYACKAANKY---GSAQKEIELFDRETQTGDE 376 (384)
Q Consensus 347 G~Y~C~a~n~~---g~~~~~~~l~v~~~~~~~~ 376 (384)
|.|+|.|.|.. ...+..+.|.|.++++.|.
T Consensus 165 G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~ 197 (242)
T 1p6f_A 165 GTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTS 197 (242)
T ss_dssp EEEEEEEEEETTEECCCCCCEEEEEEC------
T ss_pred EEEEEEEECCCCcccCCCCCEEEEEeccCCCCc
Confidence 99999999974 2445678888888765543
No 235
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.86 E-value=1.7e-20 Score=154.82 Aligned_cols=182 Identities=16% Similarity=0.287 Sum_probs=119.4
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
.+...+..+.+.+|++|+|.|.+.+.+ .+.+.|++.........+.............|+.+.. .....+|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 80 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG--SGTDFTLKI 80 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEE
T ss_pred cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc--CCCEEEEEE
Confidence 456667788899999999999998766 6899999975432111111111000001246777654 456678999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc------------cccCCCceEEeecCceEEEEEEecccC--CCe
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------ISDNSTRSVIVSEGQTVYLYCYANGFP--APT 214 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~ 214 (384)
.+++.+|+|.|+|.+.+...........|.|..++. .....+....+.+|++++|.|.+.+.+ .+.
T Consensus 81 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 160 (247)
T 1svz_A 81 SRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYS 160 (247)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred CCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcE
Confidence 999999999999999755332233456677765421 111112334589999999999998764 468
Q ss_pred EEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 215 ISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 215 v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+.|++++. ... ...+.... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 161 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 161 MHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 99999642 110 01111111 248999999999999999999985
No 236
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.86 E-value=6.9e-21 Score=156.14 Aligned_cols=178 Identities=19% Similarity=0.263 Sum_probs=123.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.+.+.+.|++....... ..+... ....|.|.+++.+|+|.|+
T Consensus 31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 110 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 110 (237)
T ss_dssp CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence 4557789999999999998888889999984321100 111111 2347999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEE---EecCeEEecCCCcccccCCcEEEEEEEec-cC-CCeEEEEECCEEecCCC--ceeeee
Q psy16652 252 CVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAILECHVEA-YP-PPAIVWIKDGVQIMNNQ--HYSVSH 324 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~--~~~~~~ 324 (384)
|.+.+..+........+.| ..+|.+...++......|+.++|.|.+.+ .| .+.+.|+++|..+.... ......
T Consensus 111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 190 (237)
T 3sob_L 111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD 190 (237)
T ss_dssp EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC
T ss_pred EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccc
Confidence 9998866533333445555 45677776666666667889999999988 44 47999999999886532 111111
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
...+.....+.|.|.....+|.|.|+|.|.|.......+..+.
T Consensus 191 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~ 233 (237)
T 3sob_L 191 SKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFN 233 (237)
T ss_dssp TTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEEE
T ss_pred cCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeeee
Confidence 1111112245688999999999999999999987665554443
No 237
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.86 E-value=8.4e-21 Score=153.30 Aligned_cols=177 Identities=20% Similarity=0.264 Sum_probs=119.0
Q ss_pred CceEEeecCceEEEEEEe-cccC-CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652 190 TRSVIVSEGQTVYLYCYA-NGFP-APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGT 249 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~-~~~~-~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~ 249 (384)
+....+.+|+++.|.|.+ .+.+ .+.+.|++++. .+. ...+... ....|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 456778999999999995 4433 57899998542 110 0111111 12379999999999999
Q ss_pred EEEEEEeCCC-CceeeEEEEEEE---ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeee
Q psy16652 250 YYCVAQNGVG-RGMKRNIAVEVE---FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVS 323 (384)
Q Consensus 250 Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~ 323 (384)
|+|.+.+..+ ........|.|. .+|.+...++......|+.++|.|.+.| .|++ .|.|+++|..+.........
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 9999999765 112233456665 4677766555444456889999999988 5554 89999999988654111111
Q ss_pred --eeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 324 --HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 324 --~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
....+.....+.|.|..+..+|.|.|+|.|.|..........+
T Consensus 167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 1111111123478999999999999999999998665544443
No 238
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.86 E-value=2.6e-23 Score=178.78 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=141.4
Q ss_pred CCCCcchhccccCCCCCC-----CC--CCCCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCe
Q psy16652 3 APSPFDFVNRFQNTSTPW-----DP--STQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTI 75 (384)
Q Consensus 3 ~~~~~w~~~~~~~~~~~~-----~~--~~~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 75 (384)
.+.+.|++|+.++..... .. .-.....|.|..+..+|+|.|.|.+.+........+. .. .......|.+
T Consensus 40 ~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~---~~-~~~~~~~p~v 115 (323)
T 2wqr_A 40 TIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK---KC-ADSNPRGVSA 115 (323)
T ss_dssp CEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC---CC-CCSSGGGCEE
T ss_pred CeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee---cC-CCCCCCCCEE
Confidence 367999999766543210 00 0011235777778888999999999875321110000 00 0011122333
Q ss_pred -eeeCcceeeeccCcEEEEEEeecC-CCc---cEEEEEeCCCCCCcccceeccCcee--eeCCceEEeeCCCCceEEEEE
Q psy16652 76 -SYISQEQIKDIAQTADLKCSVQYA-DDY---PVIWMKMDTAKKMEPLPISMSGSLI--IHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 76 -~~~~~~~~v~~g~~v~l~C~~~~~-~~~---~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+....+.+|++++|.|.+.+. |.+ .+.|++++...... ..... ..++++. ....|.|
T Consensus 116 ~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~------~~~~~~~~~~g~~~-------~~~~L~I 182 (323)
T 2wqr_A 116 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNH------STRKEEKQRNGTLT-------VTSTLPV 182 (323)
T ss_dssp EECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCC------CCCEEEECTTSCEE-------EEEEEEC
T ss_pred EEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccc------ccCCCccCCCCCEE-------EEEEEEE
Confidence 333444557899999999999874 444 89999976432110 00000 1112222 2347999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEe------cCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVR------RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRD 220 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~ 220 (384)
.+++.+|+|.|+|.+.+...+. ...+.+. .+|.+........ ...|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus 183 ~~~~~~D~G~Y~C~a~n~~~~~---~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~ 258 (323)
T 2wqr_A 183 GTRDWIEGETYQCRVTHPHLPR---ALMRSTTKTSGPRAAPEVYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHN 258 (323)
T ss_dssp CHHHHHTTCCEEEEEECTTSSS---CEEEEECCCCSCCBCCEEEEEECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHccCCCCEEEEEECCCCCC---CeeeEEEccCCCCCCCEEEEeCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEEC
Confidence 9999999999999998654322 2233332 2333322111111 123999999999987 4443 8999999
Q ss_pred CCcccccC-----------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 221 NSAALSTG-----------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 221 ~~~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+..+.... +.....+.|.|..+..+|+|.|+|.|.|....
T Consensus 259 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 259 EVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp TEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred CEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 88764321 11122357999999999999999999997665
No 239
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.86 E-value=5.6e-20 Score=152.61 Aligned_cols=198 Identities=20% Similarity=0.250 Sum_probs=127.5
Q ss_pred eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccc-eeccCce---eeeCCceEEeeCCCCceEEEEE
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLP-ISMSGSL---IIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i 148 (384)
....+....+.+|++|+|.|.+.+. +...+.|++.........+. +...+.. .....|+.+..+......+|.|
T Consensus 11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 3445666779999999999999874 47789999965432211111 1111111 1124677777654566788999
Q ss_pred eecCCCCCeeEEEEEEEcc---CcceeeeEEEEEecC-------------CccccCCCceEEeecCceEEEEEEecccCC
Q psy16652 149 KEIQETDAGIYKCEVIISL---NNKVSAEVELIVRRP-------------PIISDNSTRSVIVSEGQTVYLYCYANGFPA 212 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~~-------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 212 (384)
.+++.+|+|.|+|.+.+.. .........|.|..+ +......+....+.+|++++|.|.+.+.+.
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 170 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS 170 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence 9999999999999998642 122344567777654 112223345677899999999999988777
Q ss_pred C-eEEEEeCC--Ccccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe
Q psy16652 213 P-TISWRRDN--SAALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF 272 (384)
Q Consensus 213 ~-~v~W~~~~--~~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 272 (384)
+ .+.|++.. ..... ..+... ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus 171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEe
Confidence 7 89999843 22110 011111 1236999999999999999999875433222333455543
No 240
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.86 E-value=1.4e-21 Score=160.03 Aligned_cols=186 Identities=14% Similarity=0.182 Sum_probs=119.8
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCC-Cc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-DY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
..+.+.. +....+.+|++++|.|.+.+.+ .. .+.|++++.......+.............|+.+.. .....+|.|
T Consensus 19 ~~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I 95 (234)
T 2j6e_L 19 AQSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK--SGTSASLAI 95 (234)
T ss_dssp -CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE--ETTEEEEEE
T ss_pred cccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe--cCCeEEEEE
Confidence 4445555 7778899999999999998743 33 69999976432111111111111111235676655 445678999
Q ss_pred eecCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeC
Q psy16652 149 KEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRD 220 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~ 220 (384)
.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+. ....+|+.+.|.|.+.+. |+ +.+.|+++
T Consensus 96 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~ 174 (234)
T 2j6e_L 96 SGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFFPGAVTVAWKAD 174 (234)
T ss_dssp ESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEET
T ss_pred CCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEEC
Confidence 999999999999999876541 223344555532 2322211111 123458899999999874 44 38999999
Q ss_pred CCcccccCc----------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 221 NSAALSTGG----------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 221 ~~~~~~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+..+..... .......|.|.++..+|+|.|+|.|.|....
T Consensus 175 g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 224 (234)
T 2j6e_L 175 GAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 224 (234)
T ss_dssp TEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred CEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence 876643211 1112346889999999999999999997654
No 241
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=155.74 Aligned_cols=178 Identities=19% Similarity=0.228 Sum_probs=117.8
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
+....+.+|++|+|.|.+.+. +...+.|+|.........+............+|+.+.. .....+|.|.+++.+|+
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK--SGTSASLAITGLQSEDE 86 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc--cCCEEEEEECCCChhhC
Confidence 445778999999999999876 67789999976432222222211111122346777755 44677899999999999
Q ss_pred eeEEEEEEEccCc--ceeeeEEEEEecCCcc-------------------ccCCCceEEeecCceEEEEEEecccC--CC
Q psy16652 157 GIYKCEVIISLNN--KVSAEVELIVRRPPII-------------------SDNSTRSVIVSEGQTVYLYCYANGFP--AP 213 (384)
Q Consensus 157 G~Y~C~~~~~~~~--~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~g~~~~l~C~~~~~~--~~ 213 (384)
|.|+|.+.+..+. .......|.|..++.. ....+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 9999999865432 2334567777655421 11112334588999999999998766 67
Q ss_pred eEEEEeCCC--cccc-----------------cCceeE------eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 214 TISWRRDNS--AALS-----------------TGGSIY------RGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 214 ~v~W~~~~~--~~~~-----------------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
.+.|+++.. .+.. ..+... ....|.|.+++.+|+|.|+|.+.|..
T Consensus 167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 999998632 1100 001111 12359999999999999999999853
No 242
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.86 E-value=8.4e-22 Score=158.71 Aligned_cols=173 Identities=18% Similarity=0.338 Sum_probs=120.2
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------STGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.+.+.+.|++++ ..+. ...+... ....|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 45667899999999999988777789999854 2210 0111111 1237999999999999999
Q ss_pred EEEEeCCCCc--eeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceeee
Q psy16652 252 CVAQNGVGRG--MKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSVS 323 (384)
Q Consensus 252 C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~~ 323 (384)
|.+.|..... ......+.|. .+|.+...++...+..|+.++|.|.+.|. |+ +.+.|+++|..+.........
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 165 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP 165 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence 9999732211 1223445553 56777665555556789999999999986 54 699999999998654321111
Q ss_pred e-eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 324 H-FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 324 ~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
. ...+ ....+.|.|..++.+|+|.|+|.|.|..+..+.+
T Consensus 166 ~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (212)
T 1nfd_E 166 SKQGQN-YMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS 205 (212)
T ss_dssp BCSSSC-EEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred eecCCC-ceEEEEEEEchhhcCCCCeEEEEEEeCCceEEEE
Confidence 1 0111 1124568999999999999999999998875443
No 243
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.86 E-value=2.3e-20 Score=148.83 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=112.9
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCC----Ccee
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMK 263 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~ 263 (384)
..+.+|++++|.|.+.+ +.+.+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.+... ...+
T Consensus 17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s 95 (201)
T 1nkr_A 17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS 95 (201)
T ss_dssp SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence 45789999999999974 6779999999876543211 012456899999999999999999986421 2234
Q ss_pred eEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652 264 RNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 264 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+ +.+.+.|+++|..+......... . .......|.|.+
T Consensus 96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~--~--~~~~~~~L~i~~ 169 (201)
T 1nkr_A 96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPK--V--NGTFQADFPLGP 169 (201)
T ss_dssp CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEE--E--TTEEEEEEEEEE
T ss_pred CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccc--c--CCceEEEEEeCC
Confidence 566777765 466665544 46789999999999987 56799999999766432211110 0 111256799999
Q ss_pred cCCCCCeEEEEEEEeCC
Q psy16652 341 IERRQFGQYACKAANKY 357 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~ 357 (384)
++ |+|.|+|.|.+..
T Consensus 170 v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 170 AT--HGGTYRCFGSFHD 184 (201)
T ss_dssp CC--SCEEEEEEEEETT
T ss_pred cC--CCeeEEEEEEcCC
Confidence 98 9999999999764
No 244
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.86 E-value=3.8e-20 Score=147.54 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=115.4
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+. ..+.+|++|+|.|.+.+ +...+.|+|++....... ...+ .. .......|.|.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-----------~~~~--~~--~~~~~~~l~I~ 68 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLR-----------LIGE--HH--DGVSKANFSIS 68 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEE-----------EECE--EE--TTEEEEEEEES
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcce-----------eeee--cC--CCCceEEEEec
Confidence 45778877765 67899999999999864 667899999886521100 0000 00 12334579999
Q ss_pred ecCCCCCeeEEEEEEEccC----cceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCC
Q psy16652 150 EIQETDAGIYKCEVIISLN----NKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~ 222 (384)
+++.+|+|.|+|.+.+... ...+..+.|.|... |.+... +. ..+.+|+.++|.|.+.+ +.+.+.|++++.
T Consensus 69 ~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~-p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~ 145 (201)
T 1nkr_A 69 RMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQ-PG-PTVLAGENVTLSCSSRS-SYDMYHLSREGE 145 (201)
T ss_dssp SCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEE-SC-SEECTTCEEEEEEEESS-CCSEEEEEETTC
T ss_pred cCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecC-CC-CccCCCCeEEEEEeCCC-CCceEEEEECCc
Confidence 9999999999999975432 23456677777653 333222 22 35789999999999976 567899999987
Q ss_pred cccccCce-e----EeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 223 AALSTGGS-I----YRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 223 ~~~~~~~~-~----~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+...... . .....|.|.+++ |+|.|+|.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 146 AHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp SSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred ccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 66432111 1 125679999998 999999999875
No 245
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.86 E-value=2.2e-20 Score=149.07 Aligned_cols=169 Identities=15% Similarity=0.259 Sum_probs=117.2
Q ss_pred eEEeecCceEEEEEEec----ccCCCeEEEEeCCCccccc------------Ccee---EeccEEEEcCCCCCCCeEEEE
Q psy16652 192 SVIVSEGQTVYLYCYAN----GFPAPTISWRRDNSAALST------------GGSI---YRGNILKIPNITKTDRGTYYC 252 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~----~~~~~~v~W~~~~~~~~~~------------~~~~---~~~~~l~i~~~~~~d~G~Y~C 252 (384)
.+.+.+|+++.|.|.+. +.+.+.+.|++++..+... .+.. .....|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 35688999999999985 3456789999988655210 0111 124589999999999999999
Q ss_pred EEEeCCCCce----eeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeee
Q psy16652 253 VAQNGVGRGM----KRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSH 324 (384)
Q Consensus 253 ~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~ 324 (384)
.+.+..+... ...+.|.|..+ |.+... ....|+.+.|.|.+. |+|.|.+.|+++|..+..... ....
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~~ 157 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQ 157 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEE
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEEe
Confidence 9999766543 34667777665 444332 123478899999995 899999999999998864422 1111
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
...........+..++.+|.|.|+|.|.|..|..++.+.+.
T Consensus 158 --~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~ 198 (201)
T 1dr9_A 158 --DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN 198 (201)
T ss_dssp --CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred --cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence 10000011123345567899999999999999998887753
No 246
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.85 E-value=1.4e-20 Score=151.96 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=116.8
Q ss_pred CcceeeeccCcEEEEEEeec-CC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 79 SQEQIKDIAQTADLKCSVQY-AD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
|....+.+|++|+|.|.+.+ .+ .+.+.|++++.......+.............|+.+.. .....+|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~ 84 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK--SGTSATLGITGLQTGDE 84 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE--ETTEEEEEECSCCGGGC
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec--cCCEEEEEECCCCcccC
Confidence 56677899999999999544 32 5689999976432111111111111111245776655 45567899999999999
Q ss_pred eeEEEEEEEccC-cceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc-C-
Q psy16652 157 GIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST-G- 228 (384)
Q Consensus 157 G~Y~C~~~~~~~-~~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~-~- 228 (384)
|.|+|.+.+..+ ........|.|.. +|.+....+.. ....|+.+.|.|.+.+ .|.+ .+.|++++..+... .
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~ 163 (216)
T 2xzc_L 85 ADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQE 163 (216)
T ss_dssp EEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE
T ss_pred EEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeE
Confidence 999999986544 2233445666653 33332211111 1235889999999987 5554 89999998766443 0
Q ss_pred ---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 229 ---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 229 ---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.....+.|.|..+..+|+|.|+|.|.|....
T Consensus 164 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 164 SVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 01112237999999999999999999997544
No 247
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.85 E-value=4.7e-21 Score=154.32 Aligned_cols=181 Identities=15% Similarity=0.193 Sum_probs=118.3
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+.. |....+.+|++++|.|.+.+.+ .+.+.|++++.......+.............|+.+.. ......|.|.++
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 80 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IGDKAALTITGA 80 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEESSC
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe--eCCEEEEEECCC
Confidence 444 7777899999999999998765 4689999975321111111110000011235666655 455678999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL 225 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~ 225 (384)
+.+|+|.|+|.+.+..+........|.|.. +|.+....+. .....|+.+.|.|.+.+. |++ .+.|++++..+.
T Consensus 81 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 159 (212)
T 1q0x_L 81 QTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVT 159 (212)
T ss_dssp CGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred CccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCC
Confidence 999999999999865443334455676642 3333221111 123468899999999874 443 899999987664
Q ss_pred ccCc----------eeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 226 STGG----------SIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 226 ~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.... .......|.|.....+|+|.|+|.|.|...
T Consensus 160 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (212)
T 1q0x_L 160 AGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH 203 (212)
T ss_dssp TTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred CCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence 3211 112234688999999999999999999643
No 248
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.85 E-value=4.6e-20 Score=153.46 Aligned_cols=185 Identities=16% Similarity=0.293 Sum_probs=123.0
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCC------CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYAD------DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (384)
..+.+...|..+.+.+|++|+|.|.+.+.+ .+.+.|++.........+.............|+.+.. .....
T Consensus 4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~ 81 (264)
T 2gjj_A 4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG--SGTDF 81 (264)
T ss_dssp CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEE
T ss_pred cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec--CCCEE
Confidence 345677778888999999999999998766 6789999975321111111111000001246777654 34567
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc------------------cccCCCceEEeecCceEEEEEE
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------------------ISDNSTRSVIVSEGQTVYLYCY 206 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~------------------~~~~~~~~~~~~~g~~~~l~C~ 206 (384)
+|.|.+++.+|+|.|+|.+.+.........+.|.|..++. +....+....+.+|++++|.|.
T Consensus 82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~ 161 (264)
T 2gjj_A 82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCK 161 (264)
T ss_dssp EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEE
T ss_pred EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEE
Confidence 8999999999999999999754322233456777776531 1111123346899999999999
Q ss_pred ecccCC--CeEEEEeCCC--ccc------c-----------cCceeE------eccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 207 ANGFPA--PTISWRRDNS--AAL------S-----------TGGSIY------RGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 207 ~~~~~~--~~v~W~~~~~--~~~------~-----------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+.+.+. +.+.|+++.. ... . ..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 987654 7899999642 111 0 111111 1348999999999999999999985
No 249
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.85 E-value=2.8e-20 Score=151.23 Aligned_cols=194 Identities=16% Similarity=0.258 Sum_probs=121.7
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccc-eeccCcee----eeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLP-ISMSGSLI----IHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+.+ ...+.|+|.+.......+. +...+... ...+|+.+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 5566789999999999998765 5789999976432111111 11111111 124688877654566789999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCccc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAAL 225 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~ 225 (384)
+.+|+|.|+|.+.+.........+.|.|.. +|.+....+. ..+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 165 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG 165 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence 999999999999864322233445777764 2332221111 235679999999999874 766 999999886532
Q ss_pred cc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCe
Q psy16652 226 ST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 226 ~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~ 275 (384)
.. . +.....+.|.|..+..+| |.|+|.|.|..... .....+.+..+|.
T Consensus 166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~-~~~~~~~~~~~p~ 220 (227)
T 1mju_H 166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTI 220 (227)
T ss_dssp EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTE-EEEEECCCCCC--
T ss_pred cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCc-ceEEEeCCCCCCC
Confidence 11 0 122234579999998888 99999999965543 4444555544443
No 250
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=1.7e-20 Score=153.39 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=127.7
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+.. .+.+|++|+|.|...+ +...+.|+|++.... .. ..+ .........|.|
T Consensus 4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~-----~~--------~~~----~~~~~~~~~L~I 64 (242)
T 1p6f_A 4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFA-----VD--------RPK----PPERINKVKFYI 64 (242)
T ss_dssp CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEE-----EE--------CCS----SCTTCCEEEEEE
T ss_pred CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccc-----cc--------ccc----ccCCcceeEEEe
Confidence 3467888888877 8999999999999864 456899999764310 00 000 001234567999
Q ss_pred eecCCCCCeeEEEEEEEccCc-ceeeeEEEEEec---CCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcc
Q psy16652 149 KEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA 224 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~ 224 (384)
.+++.+|+|.|+|.+.+..+. ..+..+.|.|.. +|.+... + ...+.+|++++|.|.+.+. .+.+.|++++..+
T Consensus 65 ~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~-p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~ 141 (242)
T 1p6f_A 65 PDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSS 141 (242)
T ss_dssp CSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEE-S-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSC
T ss_pred cCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEcc-C-CCccCCCCcEEEEEecCCC-CCEEEEEECCCcc
Confidence 999999999999999754322 345677888764 3333322 2 2357899999999998764 4699999998766
Q ss_pred cccCceeEeccEEEEcCCCCCCCeEEEEEEEeCC--CCceeeEEEEEEEec
Q psy16652 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV--GRGMKRNIAVEVEFA 273 (384)
Q Consensus 225 ~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~~ 273 (384)
............|.|.+++.+|+|.|+|.+.|.. ....+..+.|.|...
T Consensus 142 ~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 142 HVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC-
T ss_pred CccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEecc
Confidence 5321112234689999999999999999999864 223466778888764
No 251
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=7.1e-20 Score=143.88 Aligned_cols=161 Identities=20% Similarity=0.391 Sum_probs=116.7
Q ss_pred eeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 82 QIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
..+.+|++++|.|.+.+.+.+ .+.|++++.... .... ......|.|. +.+|+|.|
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~--------------~~~~-------~~~~~~l~i~--~~~d~G~Y 64 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLK--------------EDAL-------PGQKTEFKVD--SDDQWGEY 64 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEE--------------CTTC-------CCSEEEEEEC--GGGCCEEE
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEee--------------cccc-------cCCcEEEEEe--chhhCeEE
Confidence 457899999999999876554 899999764311 1110 1223356666 68999999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccC-CCeEEEEe---CCCccccc---CceeE
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRR---DNSAALST---GGSIY 232 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~W~~---~~~~~~~~---~~~~~ 232 (384)
+|.+.+ .....+.|.|..+|.+... +....+.+|+.+.|.|.+.+.| .+.+.|++ ++...... .....
T Consensus 65 ~C~~~n----~~~~~~~l~V~~~P~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~ 139 (184)
T 3b5h_A 65 SCVFLP----EPMGTANIQLHGPPRVKAV-KSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139 (184)
T ss_dssp EEEEES----TTSCEEEEEECCSCCCEES-CSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEE
T ss_pred EEEEEC----CcCcEEEEEEecCCceeec-CCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEE
Confidence 999985 2346678888888776644 3556789999999999999988 78999999 44433221 11111
Q ss_pred -e---ccEEEEcCCC-CCCCeEEEEEEEeCCCCceeeEEEEEEE
Q psy16652 233 -R---GNILKIPNIT-KTDRGTYYCVAQNGVGRGMKRNIAVEVE 271 (384)
Q Consensus 233 -~---~~~l~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 271 (384)
. ...|.|.+++ .+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus 140 ~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~ 182 (184)
T 3b5h_A 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRVR 182 (184)
T ss_dssp EEETTEEEEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred EecCCeeEEEEeeccccccCceEEEEEEeCCCcc-eEEEEEEEe
Confidence 1 2389999999 899999999999998875 555667664
No 252
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.85 E-value=4.9e-20 Score=149.61 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=125.2
Q ss_pred CceEEeecCceEEEEEEecccCCC---eEEEEeCCCccccc----------------C-----------ceeEeccEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP---TISWRRDNSAALST----------------G-----------GSIYRGNILKI 239 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~----------------~-----------~~~~~~~~l~i 239 (384)
++.+.+..|+++.|.|.+.+.+.+ .+.|+|++...... . .....+.+|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 345668899999999999886665 48999987543210 0 00112357999
Q ss_pred cCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCC
Q psy16652 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQ 318 (384)
Q Consensus 240 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~ 318 (384)
.+++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|++.+.|++++..+....
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~ 167 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT 167 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence 9999999999999999977766566667777777776666666666677777777776 567888999999876553322
Q ss_pred ceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.... ...+.....+.|.|..++.+|+|.|+|.|+|..|....+..+.+
T Consensus 168 ~~~~--~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 168 QEPG--IQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEEC--SSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred ceEE--ecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence 1111 11111112356999999999999999999999988766555544
No 253
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.85 E-value=2.1e-20 Score=151.29 Aligned_cols=174 Identities=20% Similarity=0.327 Sum_probs=117.2
Q ss_pred ceEEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc-----------------cCceeEe------ccEEEEcCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS-----------------TGGSIYR------GNILKIPNIT 243 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~-----------------~~~~~~~------~~~l~i~~~~ 243 (384)
....+.+|+++.|.|.+.+.+ .+.+.|+++. ..+.. ..+.... ...|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (219)
T 1c1e_H 8 GPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLK 87 (219)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCC
T ss_pred CCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCC
Confidence 345688999999999998765 5789999873 22210 1111111 2489999999
Q ss_pred CCCCeEEEEEEEeCCCCc---eeeEEEEEEEec----CeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652 244 KTDRGTYYCVAQNGVGRG---MKRNIAVEVEFA----PVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI 314 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~ 314 (384)
.+|+|.|+|.+.+..+.. ......|.|... |.+...++...+..|+.+.|.|.+.| +|.| .|.|+++|..+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 167 (219)
T 1c1e_H 88 NEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 167 (219)
T ss_dssp GGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred cccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCccc
Confidence 999999999999975321 123456666653 66655555556678999999999998 8998 99999998764
Q ss_pred cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
......... ..+.....+.|.|..... |.|.|+|.|.|..|.......|.
T Consensus 168 ~~~~~~~~~--~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 168 GVHTFPAVL--QSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp TEEECCCEE--SSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEECC
T ss_pred ceEecCCcc--cCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEecC
Confidence 211000000 011111235688844444 56999999999998876665554
No 254
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.85 E-value=1.8e-21 Score=155.28 Aligned_cols=154 Identities=22% Similarity=0.334 Sum_probs=110.1
Q ss_pred eecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEe--
Q psy16652 195 VSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-- 272 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-- 272 (384)
+.+|+++.|.|.+ |.+.+.|++++..+... ...+..|.|.+++.+|+|.|+|.+.+.. +..+.|.+..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~ 84 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGS 84 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC--
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEec
Confidence 4689999999998 67899999998766432 1134679999999999999999975432 2224444430
Q ss_pred -----------------------------cCeEEecCCCcccc-cCCcEEEEEEEeccCCCeEEEEECCEEecCCCc-ee
Q psy16652 273 -----------------------------APVITINRPRQGQA-LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH-YS 321 (384)
Q Consensus 273 -----------------------------~p~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~ 321 (384)
++.+. ..+ ..+. +|+.++|.|. +.|.|.+.|+++|..+....+ ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~ 160 (204)
T 1sy6_A 85 ADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-QTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKN 160 (204)
T ss_dssp -----------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTT
T ss_pred ccccccccccccccccccccccccccccccccee-cCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCce
Confidence 11111 112 2334 8999999999 789999999999998865422 11
Q ss_pred eeeeeccCccccceEEEeec-CCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy16652 322 VSHFATSDEFSDTSLRVITI-ERRQFGQYACKAANKYGSA-QKEIELFDR 369 (384)
Q Consensus 322 ~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 369 (384)
+.. ....|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.++
T Consensus 161 ~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~ 203 (204)
T 1sy6_A 161 IGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203 (204)
T ss_dssp EEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred Eec-------CCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence 111 3678999999 9999999999999999963 456666553
No 255
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.85 E-value=6e-20 Score=145.24 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=111.9
Q ss_pred CceEEeecCceEEEEEEecc-cCCCeEEEEeCCCccc---ccC---------------ce-eEeccEEEEcCCCCCCCeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAAL---STG---------------GS-IYRGNILKIPNITKTDRGT 249 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~---~~~---------------~~-~~~~~~l~i~~~~~~d~G~ 249 (384)
+..+.+.+|+++.|.|.+.+ .+.+.+.|++++..+. ... +. ...+..|.|.+++.+|+|.
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~ 84 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS 84 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence 45677899999999999865 4456899999865331 000 10 1124679999999999999
Q ss_pred EEEEEEeCCCCceeeEEEEEEEecC---eEEecCCCcccccCC-cEEEEEEEecc-CCCeEEEEECCEEecCCCceeeee
Q psy16652 250 YYCVAQNGVGRGMKRNIAVEVEFAP---VITINRPRQGQALQY-DAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSH 324 (384)
Q Consensus 250 Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~ 324 (384)
|+|.+.+..+.. ...+.|.|..++ .+.... .....|. .++|.|.+.+. |.|.+.|+++|..+..
T Consensus 85 Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------- 153 (193)
T 2if7_A 85 YRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------- 153 (193)
T ss_dssp EEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred EEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence 999999887654 457788887654 333222 1223454 79999999985 5789999999986632
Q ss_pred eeccCccccceEEEeecCCC-CCeEEEEEEEeCCcceEEEEE
Q psy16652 325 FATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
...|.|.....+ |.|.|+|.|.|..|..+..+.
T Consensus 154 --------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 154 --------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp --------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred --------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 234666554444 899999999999998866543
No 256
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.85 E-value=1.4e-20 Score=155.22 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=124.3
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec--cCceee---eCCceEEeeCCCCceEEEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM--SGSLII---HDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~L~i 148 (384)
.+...+..+.+.+|++|+|.|.+.+.+...+.|+|.........+.... ...... ..+|+.+..+ ....++|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE-ETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec-CCCEEEEEE
Confidence 4666777888999999999999988888899999965432222222222 111111 1257777653 345789999
Q ss_pred eecCCCCCeeEEEEEEEccC---cceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCCC--eEEE
Q psy16652 149 KEIQETDAGIYKCEVIISLN---NKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISW 217 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~W 217 (384)
.+++.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.+.|.|.+.+.+++ .+.|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999975422 1233455677764 23222222222234569999999999885554 8999
Q ss_pred EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
++++..+... .+.......|.|.....+| +|.|+|.|.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 9988766432 1122223458888888888 99999999996544
No 257
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.85 E-value=1e-20 Score=153.78 Aligned_cols=183 Identities=19% Similarity=0.296 Sum_probs=118.8
Q ss_pred CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----c------------cCceeE------eccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----S------------TGGSIY------RGNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----~------------~~~~~~------~~~~l~i~~~ 242 (384)
+....+.+|++++|.|.+.+.+ .+.+.|++.+. ... . ..+... ....|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL 86 (227)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence 3456789999999999998765 57899998642 110 0 111111 1248999999
Q ss_pred CCCCCeEEEEEEEeCCCCceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecC
Q psy16652 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMN 316 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~ 316 (384)
+.+|+|.|.|.+.+...........|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++..+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~ 166 (227)
T 1mju_H 87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV 166 (227)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence 999999999999985322112334666653 4665554444456689999999999985 776 9999999876421
Q ss_pred CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
....... ..+.....+.|.|...+.+| |.|+|.|.|..+.......+.+.++|..|
T Consensus 167 ~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~ 222 (227)
T 1mju_H 167 HTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP 222 (227)
T ss_dssp EECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred EECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence 1000000 11111234678898888888 99999999998888888888888886554
No 258
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.85 E-value=9.7e-20 Score=147.30 Aligned_cols=182 Identities=15% Similarity=0.289 Sum_probs=122.5
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+.+ ...+.|+|.........+..... +.. ....+|+.+..+...+..+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4557789999999999998754 56899999764321111111111 000 0124688887755567789999999
Q ss_pred CCCCCeeEEEEEEEccCc--ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEeccc-CC--CeEEEEeCCC
Q psy16652 152 QETDAGIYKCEVIISLNN--KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGF-PA--PTISWRRDNS 222 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~W~~~~~ 222 (384)
+.+|+|.|+|.+.+.... .....+.|.|... |.+.... ...+.+|+.+.|.|.+.+. |. +.+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~ 164 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK 164 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence 999999999999865332 1234467777642 2222111 1124689999999999875 66 6999999987
Q ss_pred cccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce
Q psy16652 223 AALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262 (384)
Q Consensus 223 ~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 262 (384)
.+.. ..+.....+.|.|.....+|+|.|+|.|.|..+...
T Consensus 165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 6521 111122234689998888999999999999877653
No 259
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.85 E-value=1.6e-20 Score=153.30 Aligned_cols=174 Identities=21% Similarity=0.275 Sum_probs=118.4
Q ss_pred eCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC----------CCCceEEE
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD----------PETSTYIL 146 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~L 146 (384)
.+....+.+|+++.|.|.+.+.+. +.+.|++++.......+. . .......+..+.. ... ...|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~-~----~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~L 79 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLA-S----AEMQGSELQVTMHDTRGRSPPYQLDS-QGRL 79 (231)
T ss_dssp CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEE-E----EEEETTEEEEEECCCSCCSSCCEECT-TCCE
T ss_pred CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEE-e----ccccCCccccccccccccccccccCC-CceE
Confidence 356677899999999999988774 899999987653211111 0 0011111111111 011 1239
Q ss_pred EEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcccc--CCCceEEeecCceE-EEEEEe-cccCCCeEEEEeCCC
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD--NSTRSVIVSEGQTV-YLYCYA-NGFPAPTISWRRDNS 222 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~--~~~~~~~~~~g~~~-~l~C~~-~~~~~~~v~W~~~~~ 222 (384)
.|.+++.+|+|.|+|.+.+...+..+..+.|.|..+|.... ..+....+.+|+.+ .|.|.+ .+.|.+.+.|++++.
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~ 159 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQ 159 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCc
Confidence 99999999999999999876646677788888887754322 12233445688887 999999 889999999999988
Q ss_pred cccccC----ceeEe-------------ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 223 AALSTG----GSIYR-------------GNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 223 ~~~~~~----~~~~~-------------~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+.... ..... .+.|.|.....+|+|.|+|.|.|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 160 RLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp ECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred cCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 765544 11111 156888766666799999999994
No 260
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.85 E-value=2.4e-20 Score=154.27 Aligned_cols=172 Identities=20% Similarity=0.307 Sum_probs=118.5
Q ss_pred CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCcccc--------------cCceeEe----ccEEEEcCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSAALS--------------TGGSIYR----GNILKIPNITKTD 246 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~~~~--------------~~~~~~~----~~~l~i~~~~~~d 246 (384)
+....+.+|++++|.|.+.+.+ .+.+.|++++..... ..+.... ...|.|.+++.+|
T Consensus 41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 120 (252)
T 3bkj_L 41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED 120 (252)
T ss_dssp CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence 4556789999999999998876 578999996521100 1111111 1279999999999
Q ss_pred CeEEEEEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCcee
Q psy16652 247 RGTYYCVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYS 321 (384)
Q Consensus 247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~ 321 (384)
+|.|+|.+.+..+........|.|.. +|.+...++...+..|+.++|.|.+.| .|++ .+.|+++|..+.......
T Consensus 121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 200 (252)
T 3bkj_L 121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS 200 (252)
T ss_dssp CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEE
T ss_pred CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeee
Confidence 99999999987553323334566653 577766555545567899999999988 4544 799999999886541111
Q ss_pred eee--eeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 322 VSH--FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 322 ~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
... ...+.....+.|.|..+..+|.|.|+|.|.|......
T Consensus 201 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 201 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred cCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence 111 1111112235689999999999999999999876643
No 261
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=156.29 Aligned_cols=188 Identities=18% Similarity=0.249 Sum_probs=124.7
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYIL 146 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L 146 (384)
..+.+...+..+.+.+|++|+|.|.+. .+...+.|+|.........+........... .+|+.+..+ ..+..+|
T Consensus 25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL 102 (268)
T 3pl6_D 25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRP-EGSVSTL 102 (268)
T ss_dssp --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECT-TSSSEEE
T ss_pred cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEec-CCCEEEE
Confidence 345677777788899999999999986 4667899999654322222222222111111 167877764 4567899
Q ss_pred EEeecCCCCCeeEEEEEEEc-cCcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecccCC-C-eEEE
Q psy16652 147 SIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGFPA-P-TISW 217 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~-~v~W 217 (384)
.|.+++.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+.+|+.++|.|.+.+.++ + .+.|
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 182 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 182 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence 99999999999999999853 223344555677765 2332222222233456899999999988544 4 8999
Q ss_pred EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
++++..+... .+.......|.|.....+| +|.|+|.+.|....
T Consensus 183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp EESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 9998776432 1222223567888887777 99999999986443
No 262
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.85 E-value=2.3e-20 Score=154.06 Aligned_cols=194 Identities=16% Similarity=0.284 Sum_probs=118.8
Q ss_pred CcceeeeccCcEEEEEEeecCCCcc-----EEEEEeCCCCCCcccceecc-CceeeeCCceEEee-CCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYP-----VIWMKMDTAKKMEPLPISMS-GSLIIHDSRFQLTT-DPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~L~i~~~ 151 (384)
+....+.+|++++|.|.+.+.+... +.|++++.........+... ........+..+.. ....+..+|.|.++
T Consensus 10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v 89 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI 89 (248)
T ss_dssp TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence 4455689999999999998766554 99999875533222222111 11111111111110 11334567999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCcccc---
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALS--- 226 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~--- 226 (384)
+.+|+|.|+|.+.+.. +.....+.|.|..+|.+..... ..+..|+.+.|.|.+.+ .|.+ .+.|++++..+..
T Consensus 90 ~~~D~G~Y~C~~~~~~-~~~~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 90 QLEEAGEYRCEVVVTP-LKAQGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp CGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CHHHCeEEEEEEEeCC-ccceeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 9999999999998654 4456678888888776554322 23456778889999988 7888 9999999864321
Q ss_pred -------------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC-ceeeEEEEEEEecCeE
Q psy16652 227 -------------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR-GMKRNIAVEVEFAPVI 276 (384)
Q Consensus 227 -------------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~ 276 (384)
..+.......|.|.....+|+|.|+|.|.|..+. ..+..+.|.| ..|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V-~~p~~ 229 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA-ARHSL 229 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--------
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE-cCCCC
Confidence 1122223457888899999999999999997765 3455666676 34443
No 263
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.84 E-value=1e-20 Score=153.42 Aligned_cols=194 Identities=22% Similarity=0.328 Sum_probs=122.1
Q ss_pred cceeeeccCcEEEEEEeecCCC-----ccEEEEEeCCCCCCcccceeccCce--eeeCCceEEeeCC-CCceEEEEEeec
Q psy16652 80 QEQIKDIAQTADLKCSVQYADD-----YPVIWMKMDTAKKMEPLPISMSGSL--IIHDSRFQLTTDP-ETSTYILSIKEI 151 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~L~i~~~ 151 (384)
.++.+.+|++++|.|.+.+.+. ..+.|++++... .+.....+.. ....+|+.+..+. ..+..+|.|.++
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~---~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v 79 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQ---LVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRV 79 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCC---EEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSC
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCcc---EEEEEcCCcccccceeCcEEEecccccCCeEEEEECCc
Confidence 3456789999999999877543 689999987542 1111111111 1123444443211 223567999999
Q ss_pred CCCCCeeEEEEEEEccCcceeeeEEEEEecC---CccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccccc
Q psy16652 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRP---PIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALST 227 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~ 227 (384)
+.+|+|.|+|.+.+.. ..+..+.|.|..+ |.+.. .....+.+|+.+.|.|.+ .+.|.+.+.|++++......
T Consensus 80 ~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~p~i~~--~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~ 155 (222)
T 4i0k_A 80 RVTDEGSYTCFVSIQD--FDSAAVSLQVAAPYSKPSMTL--EPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTG 155 (222)
T ss_dssp CGGGCSCEEEEEEECC--CCCCCCCCCCCBCCCCCEEEC--CC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCS
T ss_pred ccccCEEEEEEEEeCC--CceEEEEEEEEcCCCCCcEEe--CCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCC
Confidence 9999999999998643 3344555666544 33322 223357789999999999 78899999999954433322
Q ss_pred Ccee-E---ec---cEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCC
Q psy16652 228 GGSI-Y---RG---NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281 (384)
Q Consensus 228 ~~~~-~---~~---~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~ 281 (384)
.... . .. ..|.|.++..+|+|.|+|.+.|..+.. ...+.|.|..+|....+..
T Consensus 156 ~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~ 215 (222)
T 4i0k_A 156 NVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQ-DAHGSVTITGQPLTFPPET 215 (222)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEECCC---------
T ss_pred CcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCC-ceEEEEEEeCCccccCCcc
Confidence 1111 1 11 247899999999999999999998875 7788899988886554433
No 264
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.84 E-value=3e-21 Score=154.67 Aligned_cols=165 Identities=14% Similarity=0.194 Sum_probs=113.8
Q ss_pred eecCceEEEEEEecccC---C-CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 195 VSEGQTVYLYCYANGFP---A-PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~~---~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+|+++.|.|.+.+.+ . ..+.|++++..+... .+.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 67899999999998764 2 489999988654321 1112223579999999999999999999977653
Q ss_pred -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
....+.+ .+..+|.+.+.+.......|+.+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|
T Consensus 95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l 174 (207)
T 2vol_A 95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKL 174 (207)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEE
T ss_pred ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEE
Confidence 2233433 45678888766555444568999999999984 553 899999999875322111111111112223446
Q ss_pred EEeecCCCCCeEEEEEEEeCCcc
Q psy16652 337 RVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
.|.....+|.|.|+|.|.|....
T Consensus 175 ~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 175 NVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EEEHHHHSSCCEEEEEEECTTSG
T ss_pred EECHHHcCCCCEEEEEEECCCCC
Confidence 67766677899999999998654
No 265
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.84 E-value=7.9e-20 Score=150.57 Aligned_cols=172 Identities=10% Similarity=0.092 Sum_probs=122.7
Q ss_pred EEeecCceEEEEEEecccCCCeEEEEeCCCcccccCc-----eeEeccEEEEcCCCCCCCeEEEEEEEeCCC----Ccee
Q psy16652 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-----SIYRGNILKIPNITKTDRGTYYCVAQNGVG----RGMK 263 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~----~~~~ 263 (384)
..+.+|++++|.|.+.+ +.+.+.|+|++..+..... .......|.|.+++.+|+|.|+|.+.+... ...+
T Consensus 16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S 94 (257)
T 1b6u_A 16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS 94 (257)
T ss_dssp SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence 45889999999999975 4678999999876532111 112456799999999999999999986422 2235
Q ss_pred eEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEee
Q psy16652 264 RNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT 340 (384)
Q Consensus 264 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 340 (384)
..+.|.|.. +|.+...+. ..+.+|+.++|.|.+.+. .+.|.|+++|..+......... ........|.|.+
T Consensus 95 ~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~----~~~~~~~~l~I~~ 168 (257)
T 1b6u_A 95 DPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPK----VNGTFQADFPLGP 168 (257)
T ss_dssp CCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCC----SSSCCBEEEEEEE
T ss_pred CCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccc----cCCceeEEEEecc
Confidence 567777765 456665443 467899999999999875 4699999999776433221110 0111356799999
Q ss_pred cCCCCCeEEEEEEEeCCc-----ceEEEEEEEEeeeec
Q psy16652 341 IERRQFGQYACKAANKYG-----SAQKEIELFDRETQT 373 (384)
Q Consensus 341 ~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~~~ 373 (384)
++ |+|.|+|.|.|... ..+..+.|.|.++|.
T Consensus 169 v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~ 204 (257)
T 1b6u_A 169 AT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS 204 (257)
T ss_dssp CC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred cc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence 98 99999999997632 334568888888754
No 266
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.84 E-value=8.4e-21 Score=147.68 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=110.2
Q ss_pred eeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 82 QIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
+.+.+|++|+|.|...+ .+.+.+.|++++... .............+|+.+..+ .+|.|.+++.+|+|.|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i----~~~~~~~~~~~~~~r~~~~~~-----gsL~I~~v~~~D~G~Y 76 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLV----AEFKRKMKPFLKSGAFEILAN-----GDLKIKNLTRDDSGTY 76 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEE----EEEETTSCCEESSTTEEECTT-----SCEEESSCCGGGCEEE
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCcee----EEEcCCCeecCCCCeEEECCC-----CcEEEcccccccCEEE
Confidence 45789999999995433 456689999976421 001111111233567766331 2499999999999999
Q ss_pred EEEEEEccCcc-eeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEE
Q psy16652 160 KCEVIISLNNK-VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238 (384)
Q Consensus 160 ~C~~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~ 238 (384)
+|.+.+..+.. .+..+.|.|..++.. + .....+..+.|.|.+.+.|.+.+.|++++..+.... .+.
T Consensus 77 ~C~~~n~~g~~~~~~~~~l~V~~~~~~-----p-~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~ 143 (176)
T 1hng_A 77 NVTVYSTNGTRILNKALDLRILEMVSK-----P-MIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKT 143 (176)
T ss_dssp EEEEEETTCCEEEEEEEEEEEECCCCC-----C-EEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSE
T ss_pred EEEEEeCCCCEEEEEEEEEEEeCCCCC-----C-EEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEE
Confidence 99998766543 466677888764321 1 222345569999999998999999999887654332 245
Q ss_pred EcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 239 IPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 239 i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
|..+..+|+|.|+|.|.|..|..
T Consensus 144 i~~~~~~d~G~Y~C~a~N~~g~~ 166 (176)
T 1hng_A 144 MSYQWTNLRAPFKCKAVNRVSQE 166 (176)
T ss_dssp EEEECSCCSSCEEEEEEETTEEE
T ss_pred EEEEEccCCeEEEEEEEecCCCc
Confidence 55778999999999999988765
No 267
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.84 E-value=8.2e-20 Score=152.50 Aligned_cols=185 Identities=17% Similarity=0.295 Sum_probs=119.5
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCC-----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (384)
..+.+...+..+.+.+|++|+|.|.+.+.+ ...+.|++.........+.............|+.+.. .....+
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~ 91 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG--SGTDFT 91 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ETTEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc--CCCEEE
Confidence 456777778888899999999999997765 4789999976432111111111100001246777654 445678
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc----------------------cccCCCceEEeecCceEEE
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI----------------------ISDNSTRSVIVSEGQTVYL 203 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~----------------------~~~~~~~~~~~~~g~~~~l 203 (384)
|.|.+++.+|+|.|+|.+.+...........|.|..++. +....+....+.+|++++|
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 999999999999999999754322233345566654321 0111123467889999999
Q ss_pred EEEecccCC--CeEEEEeCC--Cccc-------------------ccCceeEe------ccEEEEcCCCCCCCeEEEEEE
Q psy16652 204 YCYANGFPA--PTISWRRDN--SAAL-------------------STGGSIYR------GNILKIPNITKTDRGTYYCVA 254 (384)
Q Consensus 204 ~C~~~~~~~--~~v~W~~~~--~~~~-------------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~~ 254 (384)
.|.+.+.+. +.+.|++.. ..+. ...+.... ...|.|.+++.+|+|.|+|.+
T Consensus 172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 251 (268)
T 1x9q_A 172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG 251 (268)
T ss_dssp EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence 999987653 689999853 2110 01111111 247999999999999999999
Q ss_pred EeC
Q psy16652 255 QNG 257 (384)
Q Consensus 255 ~~~ 257 (384)
.+.
T Consensus 252 ~~~ 254 (268)
T 1x9q_A 252 ASY 254 (268)
T ss_dssp EET
T ss_pred ccC
Confidence 874
No 268
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.84 E-value=2.4e-20 Score=153.72 Aligned_cols=186 Identities=19% Similarity=0.287 Sum_probs=123.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce--eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL--IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
.+...+..+.+.+|++|+|.|.+.+.+...+.|+|.........+........ ....+|+.+..+ .....+|.|.++
T Consensus 3 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v 81 (245)
T 3nfj_J 3 TIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRP-QDRQFILSSKKL 81 (245)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEE-ETTEEEEEESSC
T ss_pred eeeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEec-CCCEEEEEECCC
Confidence 45666778889999999999999988888999999654322122211111111 122467776654 356789999999
Q ss_pred CCCCCeeEEEEEEEc-----cCcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEE
Q psy16652 152 QETDAGIYKCEVIIS-----LNNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWR 218 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~-----~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~ 218 (384)
+.+|+|.|+|.+.+. ..........|.|.. +|.+....+....+.+|+.+.|.|.+.+ .|++ .+.|+
T Consensus 82 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~ 161 (245)
T 3nfj_J 82 LLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWW 161 (245)
T ss_dssp CGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred ChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEE
Confidence 999999999999862 222334456677765 2322211112222345899999999988 4444 79999
Q ss_pred eCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 219 RDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 219 ~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
+++..+... ++.......|.|.....+| +|.|+|.+.|....
T Consensus 162 k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~ 219 (245)
T 3nfj_J 162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp ETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCC
Confidence 998766432 1222233578888887777 67999999986543
No 269
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.84 E-value=1.5e-19 Score=146.47 Aligned_cols=181 Identities=16% Similarity=0.290 Sum_probs=121.9
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC---c----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG---S----LIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+....+.+|++|+|.|.+.+.+ ...+.|++.........+...... . .....+|+.+..+.....++|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 86 (221)
T 3m8o_H 7 SGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMN 86 (221)
T ss_dssp ESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEEC
Confidence 4556789999999999998643 568999997644222211111110 0 111347888876555678899999
Q ss_pred ecCCCCCeeEEEEEEEccC-cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCC-C-eEEEEeCC
Q psy16652 150 EIQETDAGIYKCEVIISLN-NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-P-TISWRRDN 221 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~-~v~W~~~~ 221 (384)
+++.+|+|.|+|.+.+... ........|.|.. +|.+....+... .+|+.+.|.|.+.+ .|. + .+.|++++
T Consensus 87 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g 164 (221)
T 3m8o_H 87 SLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESG 164 (221)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCS
T ss_pred CCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECC
Confidence 9999999999999986532 2344456677752 222221111111 58999999999987 665 4 89999988
Q ss_pred Ccccc---------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 222 SAALS---------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 222 ~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
..+.. ..+.....+.|.|.....+|+|.|+|.|.|..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 165 QGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp TTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred EECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 76621 22223334569999999999999999999976553
No 270
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.84 E-value=7.9e-20 Score=151.37 Aligned_cols=178 Identities=17% Similarity=0.261 Sum_probs=122.9
Q ss_pred CceEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc-----------------ccCceeEe------ccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL-----------------STGGSIYR------GNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~ 242 (384)
+....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ...+.... ...|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL 86 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence 3446789999999999998765 5689999853 2110 01122111 247999999
Q ss_pred CCCCCeEEEEEEEeCCCC----ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCC-----eEEEEE--CC
Q psy16652 243 TKTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP-----AIVWIK--DG 311 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~v~W~~--~~ 311 (384)
+.+|+|.|+|.+.+..+. .....+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++ +|
T Consensus 87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g 166 (256)
T 1nqb_A 87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPG 166 (256)
T ss_dssp CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTT
T ss_pred ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCC
Confidence 999999999999997552 1233467778777777666666778999999999999998775 999999 55
Q ss_pred EEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEEEeeee
Q psy16652 312 VQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELFDRETQ 372 (384)
Q Consensus 312 ~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~ 372 (384)
..+. ...++.... .....+|+|.+++.+|+|.|+|.|.|..+.. .....|.|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~ 235 (256)
T 1nqb_A 167 QSPKLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRAA 235 (256)
T ss_dssp SCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred CCcEEEEEEeCCCCCccCCcEEEEc-----cCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence 4331 012332211 1134579999999999999999999854322 123456665443
No 271
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.84 E-value=4.8e-20 Score=149.48 Aligned_cols=181 Identities=18% Similarity=0.279 Sum_probs=120.4
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC----ce---eeeCCceEEeeCCCCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG----SL---IIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+....+.+|++++|.|.+.+.+ ...+.|++.........+...... .. ....+|+.+..+...+..+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4456789999999999998754 678999997643211111111110 00 01246788776544567899999
Q ss_pred ecCCCCCeeEEEEEEEccCc----ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe
Q psy16652 150 EIQETDAGIYKCEVIISLNN----KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR 219 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~ 219 (384)
+++.+|+|.|+|.+.+..+. .......|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 165 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNS 165 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECC-CSCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccc-cccccCCCcEEEEEEEccEECCCCEEEEec
Confidence 99999999999999754421 223345677764 232221111 1124579999999999884 877 999999
Q ss_pred CCCccccc-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 220 DNSAALST-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 220 ~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
++..+... .+.....+.|.|..+..+| |.|+|.|.|..+..
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~ 213 (222)
T 1q9r_B 166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 213 (222)
T ss_dssp GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCC
Confidence 88754321 1112223478999999899 99999999987753
No 272
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.84 E-value=2.8e-19 Score=146.84 Aligned_cols=186 Identities=19% Similarity=0.315 Sum_probs=122.5
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCcee-----eeCCceEEeeCCCCceEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLI-----IHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L 146 (384)
.+...+..+.+.+|++|+|.|.+.+. +...+.|+|.........+......... ...+|+.+..+...+..+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 35556677789999999999999875 5678999997643221222221111110 1457888776544468899
Q ss_pred EEeecCCCCCeeEEEEEEEccCc------ceeeeEEEEEecC-------CccccCCCceEEeecCceEEEEEEeccc-CC
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNN------KVSAEVELIVRRP-------PIISDNSTRSVIVSEGQTVYLYCYANGF-PA 212 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~~l~v~~~-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~ 212 (384)
.|.+++.+|+|.|+|.+.+...+ .....+.|.|... |......+....+.+|+.+.|.|.+.+. |.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~ 162 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD 162 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence 99999999999999999865311 1233567777653 2222221222335579999999999875 64
Q ss_pred -CeEEEEeCCC-ccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 213 -PTISWRRDNS-AALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 213 -~~v~W~~~~~-~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+.|++++. .+... .+.......|.|..... + |.|+|.+.|..+..
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~ 219 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN 219 (242)
T ss_dssp CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence 6899999986 44221 11122234788887765 4 99999999987654
No 273
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=151.13 Aligned_cols=185 Identities=15% Similarity=0.215 Sum_probs=111.1
Q ss_pred CCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceec-cCceeee----CCceEEeeCCCCceEEE
Q psy16652 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM-SGSLIIH----DSRFQLTTDPETSTYIL 146 (384)
Q Consensus 72 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~L 146 (384)
+|.+...+..+.+.+|++|+|.|.+.+.+.+.+.|++.........+.... ....... .+++....+......+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 355667777888999999999999988777899999965432222222111 1111111 12333333334566789
Q ss_pred EEeecCCCCCeeEEEEEEEccCc--ceeeeEEEEEecCC----------------ccccCCCceEEeecCceEEEEEEec
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP----------------IISDNSTRSVIVSEGQTVYLYCYAN 208 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~~----------------~~~~~~~~~~~~~~g~~~~l~C~~~ 208 (384)
.|.+++.+|+|.|+|.+.+..+. .......|.|..++ ......+....+.+|++++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 99999999999999999865432 34445667776531 1112335567889999999999987
Q ss_pred cc-CCCeEEEEeCCCcccc--------------cCceeE------eccEEEEcCCCCCCCeEEEEEEEe
Q psy16652 209 GF-PAPTISWRRDNSAALS--------------TGGSIY------RGNILKIPNITKTDRGTYYCVAQN 256 (384)
Q Consensus 209 ~~-~~~~v~W~~~~~~~~~--------------~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~ 256 (384)
+. +.+.+.|++....... ..+... ....|.|.+++.+|+|.|+|.+.+
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 63 6789999985421110 011111 123699999999999999999985
No 274
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.84 E-value=7.7e-20 Score=147.41 Aligned_cols=165 Identities=18% Similarity=0.319 Sum_probs=114.7
Q ss_pred CceEEeecCceEEEEEEeccc-------CCCeEEEEeCCCcc-----c------------ccCceeE------eccEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGF-------PAPTISWRRDNSAA-----L------------STGGSIY------RGNILKI 239 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~-------~~~~v~W~~~~~~~-----~------------~~~~~~~------~~~~l~i 239 (384)
+..+.+.+|+++.|.|.+.+. +.+.+.|++++... . ...+... ....|.|
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 86 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI 86 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence 556778999999999998653 46689999986531 0 0011111 1237999
Q ss_pred cCCCCCCCeEEEEEEEeCCCCce---eeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEecc----CCCeEEEEE
Q psy16652 240 PNITKTDRGTYYCVAQNGVGRGM---KRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAY----PPPAIVWIK 309 (384)
Q Consensus 240 ~~~~~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~v~W~~ 309 (384)
.+++.+|+|.|+|.+.+..+... ...+.|.|.. +|.+... ..+.+|+.++|.|.+.+. |.|.+.|++
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~---~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~ 163 (214)
T 2zg1_A 87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL---EPLESGRPTRLSCSLPGSCEAGPPLTFSWTG 163 (214)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC-----CCCCTTCCEEEEEECTTCCSCSSCCEEEEES
T ss_pred ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC---ccccCCCeEEEEEEeccCCCCCCCceEEEeC
Confidence 99999999999999998653211 2457777776 3444432 236789999999999774 788999999
Q ss_pred CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc--eEEEEEEEE
Q psy16652 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS--AQKEIELFD 368 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v 368 (384)
++..+.... ....+.|.|..+..+|.|.|+|.|.|..+. .+.++.|.|
T Consensus 164 ~~~~~~~~~-----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 164 NALSPLDPE-----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp STTSSSCSS-----------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred CCCccCCCC-----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 985432111 124678999999999999999999998654 455555544
No 275
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.84 E-value=3.9e-21 Score=157.19 Aligned_cols=170 Identities=19% Similarity=0.332 Sum_probs=97.4
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc--------------cCce----eEeccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--------------TGGS----IYRGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--------------~~~~----~~~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|+++.|.|.+.+.+.+.+.|++++..... ..+. ......|.|.+++.+|+|.|+
T Consensus 30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 109 (233)
T 3bqu_C 30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY 109 (233)
T ss_dssp CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence 3445678999999999998877778999986421100 0111 112337999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEe---cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeee--e
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEF---APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVS--H 324 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~--~ 324 (384)
|.+.+..+........|.|.. +|.+...++......|+.++|.|.+.|. |++ .+.|+++|..+......... .
T Consensus 110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~ 189 (233)
T 3bqu_C 110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD 189 (233)
T ss_dssp EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCC
T ss_pred EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCcc
Confidence 999986553322233455554 6777765555555679999999999985 443 79999999887654111111 1
Q ss_pred eeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 325 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
...+.....+.|.|.....+|.|.|+|.|.|....
T Consensus 190 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 190 SKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp TTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 11111123457889999999999999999998654
No 276
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.84 E-value=3e-21 Score=155.92 Aligned_cols=166 Identities=18% Similarity=0.214 Sum_probs=113.0
Q ss_pred eecCceEEEEEEeccc---CC-CeEEEEeCCCcccccC---------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 195 VSEGQTVYLYCYANGF---PA-PTISWRRDNSAALSTG---------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+|+++.|.|.+.+. |. +.+.|++++..+.... +.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~ 102 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence 5789999999999876 33 6899999986543221 112234579999999999999999999976643
Q ss_pred -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
..+.+.+ .+..+|.+.+.+.......|+.+.|.|.+.| +|.+ .|.|+++|..+.............+.....+.|
T Consensus 103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l 182 (218)
T 2rgs_A 103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKL 182 (218)
T ss_dssp CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEE
Confidence 2233322 4567788776555444446999999999998 6766 999999999874322111111111111122345
Q ss_pred EEeecCCCCCeEEEEEEEeCCcce
Q psy16652 337 RVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
.|.....+|.|.|+|.|.|.....
T Consensus 183 ~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 183 NMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp EEEHHHHHHCSCEEEEEECTTSGG
T ss_pred EECHHHcCCCCeEEEEEEcCCCCC
Confidence 566555667999999999987654
No 277
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.84 E-value=9.1e-20 Score=147.52 Aligned_cols=181 Identities=17% Similarity=0.284 Sum_probs=117.7
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++++|.|.+.+.+ ...+.|++++.......+..... +. . ....+|+.+..+...+..+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 35566789999999999998754 67899999853211111111100 00 0 113467777664445577999999
Q ss_pred cCCCCCeeEEEEEEEccCc---ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCC
Q psy16652 151 IQETDAGIYKCEVIISLNN---KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDN 221 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~ 221 (384)
++.+|+|.|+|.+.+..+. .....+.|.|... |.+....+ ...+.+|+.+.|.|.+.+ .|.+ .+.|++++
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999865421 2334567777653 32221111 123568999999999988 8888 99999988
Q ss_pred Cccccc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 222 SAALST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 222 ~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
..+... . +.....+.|.|..... |+|.|+|.|.|..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~ 209 (219)
T 1c1e_H 165 LSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASS 209 (219)
T ss_dssp BCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGT
T ss_pred cccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCC
Confidence 753211 0 1112234688854444 569999999997665
No 278
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.84 E-value=2.8e-21 Score=155.66 Aligned_cols=179 Identities=17% Similarity=0.216 Sum_probs=118.5
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
+....+.+|++|+|.|.+.+.+.+.+.|+++........+.............|+.+.. ......|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~~D~G~ 83 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SGTTATLTISGAQPEDEAA 83 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ETTEEEEEETTCCGGGCSE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe--eCCEEEEEECcCCcccCEE
Confidence 66777899999999999876666689999975332111111111111111246676665 4556789999999999999
Q ss_pred EEEEEEEccCc--ceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCcccccCce
Q psy16652 159 YKCEVIISLNN--KVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSAALSTGGS 230 (384)
Q Consensus 159 Y~C~~~~~~~~--~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~ 230 (384)
|+|.+.+.... .......|.|. .+|.+.... ....+.+|+.+.|.|.+.+. |+ +.+.|++++..+......
T Consensus 84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 162 (212)
T 1nfd_E 84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFP-PSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKT 162 (212)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCC-CCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBC
T ss_pred EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeC-CchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeec
Confidence 99999862222 22334556663 334333222 22224579999999999875 54 799999998765432110
Q ss_pred ---------eEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 231 ---------IYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 231 ---------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
....+.|.|.++..+|+|.|+|.|.|....
T Consensus 163 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 163 TKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp CCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred CCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 122356889999999999999999997654
No 279
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.84 E-value=3.7e-20 Score=153.57 Aligned_cols=175 Identities=19% Similarity=0.234 Sum_probs=118.3
Q ss_pred EEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc----------------cCceeEe------ccEEEEcCCCCCC
Q psy16652 193 VIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS----------------TGGSIYR------GNILKIPNITKTD 246 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~----------------~~~~~~~------~~~l~i~~~~~~d 246 (384)
..+.+|++++|.|.+.+.| .+.+.|++++ ..... ..+.... ...|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence 4588999999999998865 6789999863 21110 1122111 2389999999999
Q ss_pred CeEEEEEEEeCCC------Cc--eeeEEEEEEEecC---------------eEEecCCCcccccCCcEEEEEEEeccCCC
Q psy16652 247 RGTYYCVAQNGVG------RG--MKRNIAVEVEFAP---------------VITINRPRQGQALQYDAILECHVEAYPPP 303 (384)
Q Consensus 247 ~G~Y~C~~~~~~~------~~--~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 303 (384)
+|.|+|.+.+..| .. ......|.|..+| .+...+....+.+|+.++|.|.+.+.|.+
T Consensus 90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 169 (257)
T 1f3r_B 90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN 169 (257)
T ss_dssp CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence 9999999998753 11 1234567776543 12223445668899999999999998888
Q ss_pred eEEEEE--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 304 AIVWIK--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 304 ~v~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
.+.|++ +|..+. ...++.... .....+|+|.+++.+|+|.|.|.|.|..........|.|.
T Consensus 170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V~ 244 (257)
T 1f3r_B 170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLELK 244 (257)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECCS
T ss_pred cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec-----CCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEEe
Confidence 999999 554331 012333221 1134579999999999999999999975222223456665
Q ss_pred eee
Q psy16652 370 ETQ 372 (384)
Q Consensus 370 ~~~ 372 (384)
+.+
T Consensus 245 ~~~ 247 (257)
T 1f3r_B 245 AAE 247 (257)
T ss_dssp SSC
T ss_pred CCC
Confidence 554
No 280
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.84 E-value=7.7e-20 Score=150.14 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=122.5
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceee---eCCceEEeeCCCCceEEEEEee
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII---HDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+...+..+.+.+|++|+|.|.+.+ +...+.|+|.........+.......... ..+|+.+..+ .....+|.|.+
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I~~ 81 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-DDYHSEMNMSA 81 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEEC-TTSCEEEEECS
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeC-CCCEEEEEECc
Confidence 4566777888999999999999865 66789999965443222222222211111 2367877764 45678999999
Q ss_pred cCCCCCeeEEEEEEE--ccCcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeC
Q psy16652 151 IQETDAGIYKCEVII--SLNNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRD 220 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~--~~~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~ 220 (384)
++.+|+|.|+|.+.+ ...........|.|.. +|.+....+....+.+|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 161 (240)
T 3q5y_A 82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 161 (240)
T ss_dssp CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence 999999999999972 2223344455676653 2322222222223456899999999987 5656 7999999
Q ss_pred CCcccccCc-----------eeEeccEEEEcCCCCCC-CeEEEEEEEeCCC
Q psy16652 221 NSAALSTGG-----------SIYRGNILKIPNITKTD-RGTYYCVAQNGVG 259 (384)
Q Consensus 221 ~~~~~~~~~-----------~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~ 259 (384)
+..+..... .....+.|.|.....+| +|.|+|.+.|...
T Consensus 162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL 212 (240)
T ss_dssp TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence 877643221 11122358888888888 7799999998644
No 281
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.84 E-value=9.1e-20 Score=141.91 Aligned_cols=155 Identities=16% Similarity=0.249 Sum_probs=112.5
Q ss_pred CceEEeecCceEEEEEEec--ccCCCeEEEEe--CCCccc----------ccCc-eeEeccEEEEcCCCCCCCeEEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYAN--GFPAPTISWRR--DNSAAL----------STGG-SIYRGNILKIPNITKTDRGTYYCVA 254 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~--~~~~~~v~W~~--~~~~~~----------~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~ 254 (384)
...+....|+++.|.|... +.+.+.+.|++ ++..+. ...+ ....+++|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 3456788999999999542 24456899999 776552 1112 2234568999999999999999999
Q ss_pred EeCCCCce-eeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCc
Q psy16652 255 QNGVGRGM-KRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE 330 (384)
Q Consensus 255 ~~~~~~~~-~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 330 (384)
.|..+... ...+.|.|..+ |.+.. .+..+.|.|.+.+.|.+.+.|+++|..+ ..
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~------------- 143 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL------------- 143 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-------------
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-------------
Confidence 99877643 35667777643 33332 2336899999999899999999999877 11
Q ss_pred cccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 331 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
....|.+.. ..+|.|.|+|.|.|..|.......+..
T Consensus 144 -~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 144 -SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp -ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred -CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 123344433 468999999999999999888776643
No 282
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.83 E-value=3.7e-19 Score=144.23 Aligned_cols=182 Identities=20% Similarity=0.310 Sum_probs=120.6
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccC-ce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSG-SL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+..+.+.+|++|+|.|.+.+.+ ...+.|+|.........+...... .. ....+|+.+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567789999999999998754 468999997643211111111111 00 1134688877654556789999999
Q ss_pred CCCCCeeEEEEEEEccC---c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe-
Q psy16652 152 QETDAGIYKCEVIISLN---N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR- 219 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~- 219 (384)
+.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 165 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC-ENSNPSSTVAVGCLAQDFLPDSITFSWKYK 165 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT-TCCCSSSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC-cccCCCCcEEEEEEEEEEeCCCeEEEeEcc
Confidence 99999999999975432 1 122445777763 2222211111 124689999999999875 766 999999
Q ss_pred CCCcccc--------cCceeEeccEEEEcCCCC--CCCeEEEEEEEeCCCCc
Q psy16652 220 DNSAALS--------TGGSIYRGNILKIPNITK--TDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 220 ~~~~~~~--------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~ 261 (384)
++..+.. ..+.....+.|.|..... +|.|.|+|.+.|..+..
T Consensus 166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~ 217 (223)
T 1dee_B 166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK 217 (223)
T ss_dssp TSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred CCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence 7766543 012222345688887776 78999999999987764
No 283
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.83 E-value=6.9e-20 Score=150.93 Aligned_cols=186 Identities=21% Similarity=0.320 Sum_probs=122.9
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeee----CCceEEeeCCCCceEEEEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----DSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~L~i 148 (384)
+.+...+..+.+.+|++|+|.| ..+.+...+.|+|.........+........... .+|+.+..+ .....+|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~sL~I 80 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERP-DGSYFTLKI 80 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECC-TTSCEEEEE
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEec-cCceEEEEE
Confidence 4566777888899999999999 5556777999999543322122222222211111 177877764 356789999
Q ss_pred eecCCCCCeeEEEEEEEcc---CcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652 149 KEIQETDAGIYKCEVIISL---NNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW 217 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W 217 (384)
.+++.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.+.|.|.+.+ .|.+ .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 9999999999999997422 22344556677763 3322222222223456999999999987 4545 8999
Q ss_pred EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
++++..+... .+.......|.|.....+| +|.|+|.+.|....
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 9988766432 1222223458888888778 99999999986433
No 284
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.83 E-value=6.8e-20 Score=148.57 Aligned_cols=173 Identities=18% Similarity=0.297 Sum_probs=117.9
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-------------------ccCceeEe------ccEEEEcCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-------------------STGGSIYR------GNILKIPNI 242 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-------------------~~~~~~~~------~~~l~i~~~ 242 (384)
...+.+|+++.|.|.+.+.+ .+.+.|++.... .. ...+.... ...|.|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 34678999999999998755 578999985421 10 01111111 238999999
Q ss_pred CCCCCeEEEEEEEeCCCC----ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCE
Q psy16652 243 TKTDRGTYYCVAQNGVGR----GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGV 312 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~ 312 (384)
+.+|+|.|.|.+.+..+. .......|.|.. +|.+...++...+..|+.++|.|.+.|. |.| .+.|+++|.
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 168 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 168 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence 999999999999986531 112334566653 4666554444456689999999999985 888 999999987
Q ss_pred EecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.+... ..... ...+.....+.|.|..++.+| |.|+|.|.|..|.......|.
T Consensus 169 ~~~~~-~~~~~-~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 169 SSGVH-TFPAV-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp CTTEE-EEEEE-EETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred EcceE-ecccc-ccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 65321 11111 111111224578999999899 999999999999876665544
No 285
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.83 E-value=1.6e-19 Score=151.48 Aligned_cols=182 Identities=16% Similarity=0.273 Sum_probs=122.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCc----eeeeCCceEEeeCCCCceEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGS----LIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~L 146 (384)
.+.. +....+.+|++|+|.|.+.+. +...+.|++.........+.... ... .....+|+.+..+......+|
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM 81 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence 3445 677788999999999999764 56789999865433222222221 111 112346888876556777899
Q ss_pred EEeecCCCCCeeEEEEEEEc--------cCcceeeeEEEEEec---------------CCccccCCCceEEeecCceEEE
Q psy16652 147 SIKEIQETDAGIYKCEVIIS--------LNNKVSAEVELIVRR---------------PPIISDNSTRSVIVSEGQTVYL 203 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~~~~~~~~~~~~~~~~g~~~~l 203 (384)
.|.+++.+|+|.|+|.+.+. ..........|.|.. ++.+. ..+. ..+.+|++++|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~-~~p~-~~v~~G~~v~L 159 (280)
T 3fku_X 82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLT-QPPS-VSKGLRQTATL 159 (280)
T ss_dssp EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBB-CCSE-EEECTTCCEEE
T ss_pred EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEE-eCCc-EEEecCCCEEE
Confidence 99999999999999999754 122233455677765 22222 3333 78999999999
Q ss_pred EEEecc-cC-CCeEEEEeCCC--cccc------------cCceeE----eccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 204 YCYANG-FP-APTISWRRDNS--AALS------------TGGSIY----RGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 204 ~C~~~~-~~-~~~v~W~~~~~--~~~~------------~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
.|.+.+ .+ .+.+.|++... .+.. ..+... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS 234 (280)
T ss_dssp EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence 999977 43 37899998432 1110 011111 12359999999999999999999865
No 286
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.83 E-value=1.9e-20 Score=153.16 Aligned_cols=176 Identities=17% Similarity=0.289 Sum_probs=117.7
Q ss_pred CceEEeecCceEEEEEEecccC-CC-eEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-AP-TISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGT 249 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-~~-~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~ 249 (384)
+....+.+|+++.|.|.+.+.+ .+ .+.|++++. ... ...+... ....|.|.+++.+|+|.
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 105 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD 105 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence 4445688999999999998754 34 799998642 110 0111111 12379999999999999
Q ss_pred EEEEEEeCCCC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEECCEEecCCCcee
Q psy16652 250 YYCVAQNGVGR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYS 321 (384)
Q Consensus 250 Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~ 321 (384)
|+|.+.+..+. .......|.|. .+|.+...++......|+.++|.|.+.|.++ +.+.|+++|..+.......
T Consensus 106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~ 185 (234)
T 2j6e_L 106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT 185 (234)
T ss_dssp EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence 99999997662 11223445552 3555555444444456889999999998543 3899999999886542111
Q ss_pred e-eeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 322 V-SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 322 ~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
. .....+.....+.|.|..+..+|.|.|+|.|.|..+..++++.
T Consensus 186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 230 (234)
T 2j6e_L 186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230 (234)
T ss_dssp CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEecc
Confidence 0 1111111223457889999999999999999999987666553
No 287
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.83 E-value=7.5e-20 Score=150.90 Aligned_cols=173 Identities=18% Similarity=0.310 Sum_probs=117.2
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|+++.|.|.+.+.| .+.+.|+++... .. ...+.... ..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998876 578999985321 10 01111111 23799999999
Q ss_pred CCCeEEEEEEEeCCCCc-eeeEEEEEEEec---------------CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEE
Q psy16652 245 TDRGTYYCVAQNGVGRG-MKRNIAVEVEFA---------------PVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~ 308 (384)
+|+|.|+|.+.+..+.. ......|.|..+ +.+...+....+.+|+.++|.|.+.+.|.+.+.|+
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~ 170 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWY 170 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEE
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEE
Confidence 99999999999872211 123346666543 33444455566889999999999999998999999
Q ss_pred E--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEe
Q psy16652 309 K--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDR 369 (384)
Q Consensus 309 ~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 369 (384)
+ ++..+. ...++... ......+|+|.+++.+|+|.|+|.|.|..+..- ....|.|.
T Consensus 171 k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 171 QQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 9 554331 12233221 112345799999999999999999998644322 23456665
No 288
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.83 E-value=6.5e-20 Score=151.79 Aligned_cols=182 Identities=19% Similarity=0.251 Sum_probs=120.6
Q ss_pred CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--cccc-----------------cCceeEe------ccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AALS-----------------TGGSIYR------GNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~~-----------------~~~~~~~------~~~l~i~~~ 242 (384)
+....+.+|++++|.|.+.+.+ .+.+.|++... .... ..+.... ...|.|.++
T Consensus 8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 87 (253)
T 3uzq_A 8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL 87 (253)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence 3456788999999999998744 67899998321 1100 0111111 124999999
Q ss_pred CCCCCeEEEEEEEeCCCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEEEEeccCCC----
Q psy16652 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILECHVEAYPPP---- 303 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---- 303 (384)
+.+|+|.|+|.+.+..+........|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+
T Consensus 88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~ 167 (253)
T 3uzq_A 88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNS 167 (253)
T ss_dssp CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEE
T ss_pred CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCc
Confidence 999999999999986554333455666664 3555556666788999999999999998876
Q ss_pred eEEEEECC--EEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEE
Q psy16652 304 AIVWIKDG--VQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFD 368 (384)
Q Consensus 304 ~v~W~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 368 (384)
.+.|++++ ..+. ...++.... .....+|+|.+++.+|+|.|.|.|.|..+..- .-..|.|
T Consensus 168 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v 242 (253)
T 3uzq_A 168 FMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG-----SRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEI 242 (253)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEE
T ss_pred EEEEEEECCCCCCEEEEEEccccCCccCCceEEeC-----CCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEE
Confidence 89999842 2111 012222211 11345799999999999999999999654332 2356777
Q ss_pred eeeecCCc
Q psy16652 369 RETQTGDE 376 (384)
Q Consensus 369 ~~~~~~~~ 376 (384)
.+.++.+.
T Consensus 243 ~~~~~~~~ 250 (253)
T 3uzq_A 243 KRPLEHHH 250 (253)
T ss_dssp CCC-----
T ss_pred cCCCCCcc
Confidence 77765443
No 289
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.83 E-value=1.8e-20 Score=151.94 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=124.1
Q ss_pred ceEEeecCceEEEEEEecc-cCCC----eEEEEeCCCcccc-------------cCcee-E--------eccEEEEcCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANG-FPAP----TISWRRDNSAALS-------------TGGSI-Y--------RGNILKIPNIT 243 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~-~~~~----~v~W~~~~~~~~~-------------~~~~~-~--------~~~~l~i~~~~ 243 (384)
....+.+|+++.|.|.+.+ .+.+ .+.|++++..... ..+.. . .+..|.|.+++
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~ 86 (221)
T 3eow_R 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLR 86 (221)
T ss_dssp CCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSS
T ss_pred CcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCC
Confidence 3455788999999999844 3433 4999998642211 11111 1 24589999999
Q ss_pred CCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcE-EEEEEEe-ccCCCeEEEEECCEEecCCCcee
Q psy16652 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDA-ILECHVE-AYPPPAIVWIKDGVQIMNNQHYS 321 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~ 321 (384)
.+|+|.|+|.+.+.........+.|.|..+|.+...+.... ..|+.+ .|.|.+. +.|.|.+.|++++........
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~-- 163 (221)
T 3eow_R 87 VEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ-- 163 (221)
T ss_dssp CCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEE--
T ss_pred hHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccce--
Confidence 99999999999987622346778888888888775443333 677888 4999987 899999999987544332111
Q ss_pred eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 322 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
......+.....+.|.|..+..+|.|.|+|.|.|..+.....+.|.....
T Consensus 164 ~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~~~~ 213 (221)
T 3eow_R 164 VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213 (221)
T ss_dssp ECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECCCCC
T ss_pred eecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEEEEE
Confidence 11111122223467999999999999999999999988777776665443
No 290
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.82 E-value=1.5e-19 Score=146.34 Aligned_cols=181 Identities=19% Similarity=0.324 Sum_probs=119.3
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc--Cc-----eeeeCCceEEeeCCCCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS--GS-----LIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
+....+.+|++|+|.|.+.+.+ ...+.|+|.+.......+..... +. .....+|+.+..+...+..+|.|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence 5566789999999999998755 67899999764311111111110 00 011246787766444567799999
Q ss_pred ecCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCC
Q psy16652 150 EIQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~ 221 (384)
+++.+|+|.|+|.+.+..+. .......|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 165 (220)
T 1pz5_B 87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA 165 (220)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc-ccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence 99999999999999865322 122446677753 232221111 1235689999999999886 888 99999987
Q ss_pred Ccc----cc---cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 222 SAA----LS---TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 222 ~~~----~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
... .. ..+.....+.|.|.....++ |.|+|.|.|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 211 (220)
T 1pz5_B 166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKV 211 (220)
T ss_dssp CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTE
T ss_pred cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccE
Confidence 631 10 01222335678998888766 99999999987753
No 291
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.82 E-value=2.8e-20 Score=150.77 Aligned_cols=189 Identities=15% Similarity=0.248 Sum_probs=125.4
Q ss_pred CcceeeeccCcEEEEEEeec-CCCc----cEEEEEeCCCCCCcccceec-cCceeeeCCceEEeeCC---CCceEEEEEe
Q psy16652 79 SQEQIKDIAQTADLKCSVQY-ADDY----PVIWMKMDTAKKMEPLPISM-SGSLIIHDSRFQLTTDP---ETSTYILSIK 149 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~-~~~~----~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~L~i~ 149 (384)
+..+.+.+|++++|.|.+.+ .+.+ .+.|++++.... ...+.. .+......+|+.+..+. ..+..+|.|.
T Consensus 6 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~ 83 (221)
T 3eow_R 6 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGS--MAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMF 83 (221)
T ss_dssp CCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSS--CCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECC
T ss_pred CCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCce--EEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEc
Confidence 44566789999999999854 3333 499999864311 111111 11111125666665421 2346789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceE-EEEEEec-ccCCCeEEEEeCCCccccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTV-YLYCYAN-GFPAPTISWRRDNSAALST 227 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~-~l~C~~~-~~~~~~v~W~~~~~~~~~~ 227 (384)
+++.+|+|.|+|.+.+...+.....+.|.|..+|.+........ .+|+.+ .|.|.+. +.|.+.+.|++++......
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~--~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~ 161 (221)
T 3eow_R 84 GLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ--LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQT 161 (221)
T ss_dssp CSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC--CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCC
T ss_pred cCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc--cCCceEEEEEEECCCccCCCeeEEEeCCCCCCcc
Confidence 99999999999999876545567777788877776553222211 578888 5999986 7899999999875443221
Q ss_pred -------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecC
Q psy16652 228 -------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274 (384)
Q Consensus 228 -------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p 274 (384)
.+.....+.|.|..+..+|+|.|+|.|.|..+.. .+.+.|..+|
T Consensus 162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~---~~~~~v~~~~ 212 (221)
T 3eow_R 162 SQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEK---PQLLTVSLTV 212 (221)
T ss_dssp EEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSS---CEEEEECCCC
T ss_pred ceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCC---CeEEEEEEEE
Confidence 1111223579999999999999999999976543 3455555544
No 292
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.82 E-value=1.2e-19 Score=146.88 Aligned_cols=171 Identities=20% Similarity=0.315 Sum_probs=116.8
Q ss_pred ceEEeecCceEEEEEEecccC--CCeEEEEeCCC--c---ccc----------------cCceeEe------ccEEEEcC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--A---ALS----------------TGGSIYR------GNILKIPN 241 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~---~~~----------------~~~~~~~------~~~l~i~~ 241 (384)
....+.+|+++.|.|.+.+.+ .+.+.|++.+. . +.. ..+.... ...|.|.+
T Consensus 8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 87 (220)
T 1pz5_B 8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN 87 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence 345688999999999998765 57899998642 1 000 1111111 12899999
Q ss_pred CCCCCCeEEEEEEEeCCCCc--eeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEE
Q psy16652 242 ITKTDRGTYYCVAQNGVGRG--MKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQ 313 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~ 313 (384)
++.+|+|.|+|.+.+..+.. ......|.|. .+|.+...++...+.+|+.++|.|.+.|. |.| .+.|++++..
T Consensus 88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 167 (220)
T 1pz5_B 88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS 167 (220)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence 99999999999999865321 1134566665 35666655545556789999999999986 888 9999998863
Q ss_pred ec--CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 314 IM--NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 314 ~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
.. ..... . ..+.....+.|.|.....+| |.|+|.|.|..|+.++++.+
T Consensus 168 ~~~~~~~~~--~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~ 217 (220)
T 1pz5_B 168 SGVRTVSSV--L--QSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKEI 217 (220)
T ss_dssp TTEEECCCE--E--ETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred cceEEcCCc--c--cCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeecC
Confidence 10 00000 0 00111234678898888866 99999999999987776543
No 293
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.82 E-value=1.8e-19 Score=148.98 Aligned_cols=163 Identities=17% Similarity=0.230 Sum_probs=111.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc--------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL--------------STGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++...... ...+... ....|.|.+++.+|+|.|+
T Consensus 11 p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 90 (250)
T 3esu_F 11 TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYF 90 (250)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEE
Confidence 556778999999999999998888999998542110 0011111 1227999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEec-------------------CeEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEEC
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEFA-------------------PVITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKD 310 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~ 310 (384)
|.+.+..+........|.|..+ +.....+....+.+|+.++|.|.+.+.| .+.+.|+++
T Consensus 91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 170 (250)
T 3esu_F 91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQ 170 (250)
T ss_dssp EEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEE
T ss_pred EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEE
Confidence 9999865543334445666543 2233344556688999999999998877 779999997
Q ss_pred --CEEecC-----------------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652 311 --GVQIMN-----------------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 311 --~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
+..+.. ..++.+.... .....+|+|.+++.+|+|.|.|.|.|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 171 RPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADK---SSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp CTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCCCCcEEEEEEeccCCccccCccccceEEEEecC---CCCeEEEEECCCCcccCEEEEEEEec
Confidence 432210 1233332111 11345799999999999999999997
No 294
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.82 E-value=1.3e-19 Score=139.98 Aligned_cols=148 Identities=15% Similarity=0.147 Sum_probs=108.5
Q ss_pred eEEeecCceEEEEEEecccCCCeEEEEeCCCccccc------------CceeE--eccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST------------GGSIY--RGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~------------~~~~~--~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
.+.+.+|++++|.|.+.+ |.+.+.|++++..+... .+... .+..|.|.+++.+|+|.|.|.+.+.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 456889999999999854 77899999987543211 11111 3468999999999999999999887
Q ss_pred CCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccc
Q psy16652 258 VGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT 334 (384)
Q Consensus 258 ~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (384)
.+ ...+.|.|..+ |.+...... ..|.|.+.+.|.|.+.|+++|..+.... ..
T Consensus 83 ~~---~~~~~L~V~~~~~~p~i~~~~~~--------~~L~C~~~~~p~p~i~W~~~~~~l~~~~--------------~~ 137 (171)
T 1ccz_A 83 TD---TMKFFLYVLEMVSKPMIYWECSN--------ATLTCEVLEGTDVELKLYQGKEHLRSLR--------------QK 137 (171)
T ss_dssp CS---CEEEEEEEECCCCCCEEEEETTT--------TEEEEECSSCSSCEEEEEETTEEEEEES--------------SS
T ss_pred CC---cEEEEEEEECcCCCCEEEEecCC--------cEEEEEeCCCCCcEEEEEECCEECcCCc--------------ce
Confidence 66 45677777664 333322211 2799999998999999999998875322 22
Q ss_pred eEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 335 SLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 335 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
.|.+. ..+|.|.|+|.|.|..|.....+.|.
T Consensus 138 ~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 138 TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp EEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred EEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 33333 36789999999999999988877664
No 295
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.82 E-value=2.8e-19 Score=148.24 Aligned_cols=177 Identities=19% Similarity=0.300 Sum_probs=118.3
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCCcccc-------------------cCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALS-------------------TGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~-------------------~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+.+ .+.+.|++....... ..+.... ...|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 35588999999999998755 578999984321100 0111111 22599999999
Q ss_pred CCCeEEEEEEEeCCC---CceeeEEEEEEEe----------------cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652 245 TDRGTYYCVAQNGVG---RGMKRNIAVEVEF----------------APVITINRPRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
+|+|.|.|.+.+... ........|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v 170 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNL 170 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEE
Confidence 999999999998621 1123345666664 556666666678899999999999999888899
Q ss_pred EEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEee
Q psy16652 306 VWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDRE 370 (384)
Q Consensus 306 ~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~ 370 (384)
.|+++ +..+. ...++.... .....+|+|.+++.+|+|.|.|.|.|..+..- ....|.|.+
T Consensus 171 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 171 NWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR-----SGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp EEEEECTTCCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred EEEEECCCCCcEEEEEeccccCCccCCCEEEec-----CCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence 99984 22111 112332221 11345699999999999999999999654332 235677776
Q ss_pred eec
Q psy16652 371 TQT 373 (384)
Q Consensus 371 ~~~ 373 (384)
.+.
T Consensus 246 ~~~ 248 (256)
T 3umt_A 246 AAA 248 (256)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 296
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.82 E-value=4.3e-19 Score=148.74 Aligned_cols=181 Identities=14% Similarity=0.181 Sum_probs=116.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcc-----cc---------cCceeEe----ccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA-----LS---------TGGSIYR----GNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~-----~~---------~~~~~~~----~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|++++|.|.+.+.|.+.+.|++++... .. ..+.... ...|.|.+++.+|+|.|+
T Consensus 19 p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 98 (276)
T 3auv_A 19 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY 98 (276)
T ss_dssp CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEE
Confidence 45567899999999999998888899999865311 00 1111111 237999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEecC--------------eEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECC--EE
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEFAP--------------VITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDG--VQ 313 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~--~~ 313 (384)
|.+.|..+........|.|..+| .....+....+.+|+.++|.|.+.+.| .+.+.|++++ ..
T Consensus 99 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~ 178 (276)
T 3auv_A 99 CQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKC 178 (276)
T ss_dssp EEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCC
T ss_pred EEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCC
Confidence 99998754422333556665543 122234556788999999999999876 4799999963 21
Q ss_pred e-----------------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC---cc--eEEEEEEEEeee
Q psy16652 314 I-----------------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY---GS--AQKEIELFDRET 371 (384)
Q Consensus 314 ~-----------------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~--~~~~~~l~v~~~ 371 (384)
+ ....++.+.... ......|.|.+++.+|+|.|.|.|.|.. +. ......|.|...
T Consensus 179 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l~V~~~ 255 (276)
T 3auv_A 179 LEWVAGITPAGGYTYYADSVKGRFTISADT---SKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLVTVSSA 255 (276)
T ss_dssp EEEEEEECGGGCCEEECTTTTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEEEEC--
T ss_pred cEEEEEEeccCCccccccccCCcEEEEecC---CCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEEEEccc
Confidence 1 012233332210 1124579999999999999999999983 21 112346666655
Q ss_pred ec
Q psy16652 372 QT 373 (384)
Q Consensus 372 ~~ 373 (384)
++
T Consensus 256 ~~ 257 (276)
T 3auv_A 256 SA 257 (276)
T ss_dssp --
T ss_pred cc
Confidence 43
No 297
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.82 E-value=6.8e-20 Score=147.24 Aligned_cols=168 Identities=20% Similarity=0.275 Sum_probs=114.5
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNITKT 245 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~ 245 (384)
...+.+|+++.|.|.+.+.+ .+.+.|++++ .... ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 88 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE 88 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence 34678999999999998765 3789999863 2110 01122111 138999999999
Q ss_pred CCeEEEEEEEeCCCCceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCc
Q psy16652 246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQH 319 (384)
Q Consensus 246 d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~ 319 (384)
|+|.|+|.+.+... ......|.|. .+|.+...++...+..|+.++|.|.+.|. |.| .+.|++++..+.....
T Consensus 89 D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~ 166 (210)
T 3d9a_H 89 DTATYYCANWDGDY--WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF 166 (210)
T ss_dssp GCEEEEEEETTSSC--BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred cCEEEEEEEecCcc--cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEc
Confidence 99999999998631 1223455555 35666655555567789999999999986 888 9999999875421111
Q ss_pred eeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
.... ..+.....+.|.|.....+| |.|+|.|.|..|......
T Consensus 167 ~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 167 PAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK 208 (210)
T ss_dssp CCEE--ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred CCcc--CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence 0111 11111234568999988877 999999999999876543
No 298
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.82 E-value=3e-18 Score=139.62 Aligned_cols=182 Identities=19% Similarity=0.280 Sum_probs=116.5
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+....+.+|++|+|.|.+.+.+ ...+.|+|.........+......... ...+|+.+..+...+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (232)
T 1dn0_B 7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT 86 (232)
T ss_dssp ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCC
Confidence 4556789999999999998753 578999997643222222211111111 1246888876555667899999999
Q ss_pred CCCCeeEEEEEEEccC--c---ceeeeEEEEEecC----CccccCCCceEEeecC-ceEEEEEEeccc-CCC-eEEEEe-
Q psy16652 153 ETDAGIYKCEVIISLN--N---KVSAEVELIVRRP----PIISDNSTRSVIVSEG-QTVYLYCYANGF-PAP-TISWRR- 219 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~--~---~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~-~v~W~~- 219 (384)
.+|+|.|+|.+.+..+ . .....+.|.|... |.+....+. ..+..| +.+.|.|.+.+. |.+ .+.|++
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~ 165 (232)
T 1dn0_B 87 AADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKYK 165 (232)
T ss_dssp GGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEET
T ss_pred cccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEEEcC
Confidence 9999999999963111 1 1234567777652 222211111 123478 999999999874 776 999999
Q ss_pred CCCcccc--------cCceeEeccEEEEcCCCC--CCCeEEEEEEEeCCCCc
Q psy16652 220 DNSAALS--------TGGSIYRGNILKIPNITK--TDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 220 ~~~~~~~--------~~~~~~~~~~l~i~~~~~--~d~G~Y~C~~~~~~~~~ 261 (384)
++..+.. ..+.....+.|.|..... +|.|.|+|.+.|..+..
T Consensus 166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~ 217 (232)
T 1dn0_B 166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK 217 (232)
T ss_dssp TSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred CCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence 7765532 012222345788988887 78999999999987653
No 299
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.82 E-value=1.1e-20 Score=148.48 Aligned_cols=144 Identities=20% Similarity=0.274 Sum_probs=100.6
Q ss_pred eeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee-cCCCCCeeEEE
Q psy16652 83 IKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE-IQETDAGIYKC 161 (384)
Q Consensus 83 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C 161 (384)
++.+|+++.|.|.+.+ + ..+.|+|++..... . .+.+|.|.+ ++.+|+|.|+|
T Consensus 10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~---------------~----------~~~~L~I~~~~~~~D~G~Y~C 62 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQ---------------K----------HDKHLVLQDFSEVEDSGYYVC 62 (186)
T ss_dssp EEEETTEEEEECSSCC-C-TTCEEEETTEEECS---------------C----------CCSEEEEESCCTTTSCEEEEE
T ss_pred EEeCCcEEEEEEeCCC-C-CceEEEECCEECCC---------------C----------CCCEEEECCCCccccCEEEEE
Confidence 4578999999999876 3 35999997754110 0 122699999 99999999999
Q ss_pred EEEEccCcceeeeEEEEEec--CCcc----------------cc---CCCce---EEeecCceEEEEEEecccCCCeEEE
Q psy16652 162 EVIISLNNKVSAEVELIVRR--PPII----------------SD---NSTRS---VIVSEGQTVYLYCYANGFPAPTISW 217 (384)
Q Consensus 162 ~~~~~~~~~~~~~~~l~v~~--~~~~----------------~~---~~~~~---~~~~~g~~~~l~C~~~~~~~~~v~W 217 (384)
.+.+..+. .+..+.+.|.. ++.. .. ..... ..+.+|+++.|.|.+ |.+.+.|
T Consensus 63 ~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W 138 (186)
T 1jbj_A 63 YTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKW 138 (186)
T ss_dssp ECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEE
T ss_pred EEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEE
Confidence 99755443 33333333322 1110 00 00001 124499999999988 7789999
Q ss_pred EeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++++..+..... ....|.|.++..+|+|.|+|.|.|..|.
T Consensus 139 ~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 139 LKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp EETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred EECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 999987653322 5668999999999999999999997654
No 300
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.82 E-value=9.1e-20 Score=144.18 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=109.1
Q ss_pred eCcceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCc--------eeeeCCceEEeeCCCCceEEEEE
Q psy16652 78 ISQEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGS--------LIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
.|..+.+.+|++|+|.|.+.+ .+...+.|++++... ..+..... .....+|+.+. .+.+|.|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~R~~~~-----~~~sL~I 74 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSL----AFIVPHETKSPEIHVTNPKQGKRLNFT-----QSYSLQL 74 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEE----EEEECCSSSCCEEEECCHHHHTTEEEC-----TTCCEEE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEE----EEEecccCCCCceeecCccccccEEEC-----CCeEEEE
Confidence 355677899999999999875 345689999975311 00111000 00112355553 2357999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANGF-PAPTISWRRDNSAALS 226 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~v~W~~~~~~~~~ 226 (384)
.+++.+|+|.|+|.+.+..+. ....+.|.|..++..+...........|. .+.|.|.+.+. |.+.+.|++++..+.
T Consensus 75 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~- 152 (193)
T 2if7_A 75 SNLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS- 152 (193)
T ss_dssp CSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-
T ss_pred CCCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-
Confidence 999999999999999855443 44577888876543221111111233465 89999999884 578999999876442
Q ss_pred cCceeEeccEEEEcCCCCC-CCeEEEEEEEeCCCCc
Q psy16652 227 TGGSIYRGNILKIPNITKT-DRGTYYCVAQNGVGRG 261 (384)
Q Consensus 227 ~~~~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~~ 261 (384)
.+..|.|.....+ |+|.|+|.|.|..+..
T Consensus 153 ------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~ 182 (193)
T 2if7_A 153 ------SQPNLTVSWDPRISSEQDYTCIAENAVSNL 182 (193)
T ss_dssp ------SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred ------CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence 2345777554444 8999999999987764
No 301
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=151.09 Aligned_cols=203 Identities=15% Similarity=0.173 Sum_probs=116.0
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc----
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS---- 226 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---- 226 (384)
.+..|.+.|.|.+.+..+... ....+.|. ..+..+.+.+|++++|.|.+.+ +.+.+.|++.......
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-------~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~ 73 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSG-GGGGMKVI-------QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLI 73 (270)
T ss_dssp --------------------------CCCE-------EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEE
T ss_pred chhhhHHHHHHHHhccCCccc-cccceeEE-------eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEE
Confidence 356899999999975544322 11122222 1245567899999999999865 6679999983321100
Q ss_pred ---c----------C-ceeE-----eccEEEEcCCCCCCCeEEEEEEEeCCC---CceeeEEEEEEEe------cCeEEe
Q psy16652 227 ---T----------G-GSIY-----RGNILKIPNITKTDRGTYYCVAQNGVG---RGMKRNIAVEVEF------APVITI 278 (384)
Q Consensus 227 ---~----------~-~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~ 278 (384)
. . +... ....|.|.+++.+|+|.|.|.+.+... ........|.|.. +|.+.+
T Consensus 74 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~ 153 (270)
T 3qib_D 74 NFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAV 153 (270)
T ss_dssp EEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEE
T ss_pred EECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEE
Confidence 0 0 1111 134799999999999999999996421 1123345666665 566554
Q ss_pred c-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecCCCceeeeee------eccCccccceEEEeecCCCC-CeE
Q psy16652 279 N-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQ 348 (384)
Q Consensus 279 ~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~ 348 (384)
. +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+........... ..+.....+.|.|.....+| .|.
T Consensus 154 ~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~ 233 (270)
T 3qib_D 154 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNH 233 (270)
T ss_dssp EECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCE
T ss_pred ECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCe
Confidence 3 33344566999999999988 6766 8999999999865432211000 11111123557888887777 999
Q ss_pred EEEEEEeCCcceEE
Q psy16652 349 YACKAANKYGSAQK 362 (384)
Q Consensus 349 Y~C~a~n~~g~~~~ 362 (384)
|+|.|.|.......
T Consensus 234 YtC~v~~~~l~~~~ 247 (270)
T 3qib_D 234 FRCQVQFYGLSEND 247 (270)
T ss_dssp EEEEEEECCBCTTS
T ss_pred EEEEEEecCCCCcc
Confidence 99999998776554
No 302
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.82 E-value=2.9e-19 Score=146.54 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=111.9
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc---------------ccCceeE-----eccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL---------------STGGSIY-----RGNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~ 247 (384)
+..+.+.+|++++|.|. .+.+.+.+.|+++.. ... ...+... ....|.|.+++.+|+
T Consensus 7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds 85 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT 85 (238)
T ss_dssp CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence 45677899999999999 677888999999521 100 0111111 134799999999999
Q ss_pred eEEEEEEEeCCCCc----eeeEEEEEEEecC------------eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC
Q psy16652 248 GTYYCVAQNGVGRG----MKRNIAVEVEFAP------------VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG 311 (384)
Q Consensus 248 G~Y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 311 (384)
|.|+|.+.+..+.. ......|.|...+ .+...+....+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus 86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~ 165 (238)
T 2p1y_A 86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF 165 (238)
T ss_dssp EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence 99999999875421 1133456665543 4444556667889999999999999999999999964
Q ss_pred E-----Ee---------cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 312 V-----QI---------MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 312 ~-----~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
. .+ ....++.+... ......+|.|.+++.+|+|.|+|.|.|..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 166 PGEGPALLISILSVSDKKEDGRFTIFFN---KREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp TTSCCEEEEEEETTCSEEEETTEEEEEE---TTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCCCCEEEEEEccCCCcccCCceEEEec---CCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 1 11 01122222210 11234689999999999999999999984
No 303
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.82 E-value=1.9e-18 Score=135.90 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=114.8
Q ss_pred eEEeecCceEEEEEEecccCCC--eEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
.+.+..|++++|.|.+ +.|.| .|.|.+.+..+. .......+..|.|.+++.+|+|.|.|.+.+..+. ..+.+.|.
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~lt 92 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG-AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLL 92 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC-CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC-cEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEE
Confidence 3678999999999999 77777 999999665441 1111223568999999999999999999998765 46789999
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEecc-CC----CeEEEEECCEEecCCCcee--eee----e--ec-cCccccce
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVEAY-PP----PAIVWIKDGVQIMNNQHYS--VSH----F--AT-SDEFSDTS 335 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~~~~~~~~~~~~--~~~----~--~~-~~~~~~~~ 335 (384)
|..+|......+. ....|+.. |.|.+.+. |. ++|.|+++|.++....... ... . .. ....-.++
T Consensus 93 V~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~ 170 (210)
T 1gsm_A 93 VYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTER 170 (210)
T ss_dssp EEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEE
T ss_pred EEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEE
Confidence 9999865442222 56677888 99999884 64 3899999999996443211 100 0 00 01111233
Q ss_pred EEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 336 LRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 336 l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
|.+.....+|.+.|+|.|.+..-...
T Consensus 171 ~~~~~~~~D~~~~~tC~a~~~L~~~~ 196 (210)
T 1gsm_A 171 WRLPPLGTPVPPALYCQATMRLPGLE 196 (210)
T ss_dssp EECCCCCSSCCSEEEEEEEEEETTEE
T ss_pred EeecCCcccCCceEEEEEEeeCCCCc
Confidence 44445566667899999999864443
No 304
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.82 E-value=6.5e-20 Score=148.88 Aligned_cols=190 Identities=15% Similarity=0.226 Sum_probs=123.3
Q ss_pred CcceeeeccCcEEEEEEeecCCCc---cEEEEEeCCCCCCcccceeccC-----ceeeeCCceEEee-----CCCCceEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDY---PVIWMKMDTAKKMEPLPISMSG-----SLIIHDSRFQLTT-----DPETSTYI 145 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~ 145 (384)
++++.+..|++|+|.|.+.+.+.. .|.|+|++..... ...... .......+..+.. .....+++
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVA---AFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDAT 84 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEE---EEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCC
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceE---EEecccceeeccccccccceeeeccccccccccCcEE
Confidence 445678999999999999876543 4899997754210 000000 0011122222221 12345668
Q ss_pred EEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcc
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAA 224 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~ 224 (384)
|.|.+++.+|+|.|+|.+.+..+........+.+..++..... +.......++.+.+.|.+ .+.|++.+.|++++...
T Consensus 85 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~ 163 (225)
T 4fmk_A 85 LAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAE-AQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE 163 (225)
T ss_dssp EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-ECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred EEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeec-ccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence 9999999999999999998776665665666666665544322 222335567777777776 56788899999987655
Q ss_pred cccCc-------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEEEEEe
Q psy16652 225 LSTGG-------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEF 272 (384)
Q Consensus 225 ~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~ 272 (384)
..... .....+.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|++
T Consensus 164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence 43221 11223479999999999999999999977654 34455555544
No 305
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.82 E-value=3.7e-19 Score=144.42 Aligned_cols=180 Identities=18% Similarity=0.270 Sum_probs=118.7
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+.+ ...+.|+|.........+..... +. . ....+|+.+..+...+..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4556789999999999998765 67899999764321111111111 00 0 0124688877654566789999999
Q ss_pred CCCCCeeEEEEEEEccC-----c--ceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEE
Q psy16652 152 QETDAGIYKCEVIISLN-----N--KVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWR 218 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~ 218 (384)
+.+|+|.|+|.+.+..+ . .....+.|.|... |.+....+.. .+.+|+.+.|.|.+.+. |.+ .+.|+
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~ 165 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN 165 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence 99999999999986542 1 1223467777652 3222111111 24679999999999875 766 99999
Q ss_pred eCCCcccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 219 RDNSAALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 219 ~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+++..+.. ..+.......|.|.....+| |.|+|.|.|..+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 98865321 11112233468999988888 9999999996543
No 306
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.82 E-value=3.4e-19 Score=145.08 Aligned_cols=184 Identities=17% Similarity=0.275 Sum_probs=118.9
Q ss_pred eeeeCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEE
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i 148 (384)
+...+..+.+.+|++|+|.|.+.+. +...+.|+|.........+........ ....+|+.+..+...+..+|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 4455667788999999999998764 456899999764322222222211111 1145788887755557889999
Q ss_pred eecCCCCCeeEEEEEEEc--cC-cceeeeEEEEEec---------CCccccCCCceEEeecCceEEEEEEeccc-CC-Ce
Q psy16652 149 KEIQETDAGIYKCEVIIS--LN-NKVSAEVELIVRR---------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PT 214 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~--~~-~~~~~~~~l~v~~---------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~ 214 (384)
.+++.+|+|.|.|.+.+. .. ......+.|.|.. +|......+....+.+|+.+.|.|.+.+. |. +.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~ 163 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIR 163 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCE
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeE
Confidence 999999999999999753 11 1223445777762 12211111222224468899999999875 65 59
Q ss_pred EEEEe-CCCccccc--------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 215 ISWRR-DNSAALST--------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 215 v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.|++ ++..+... ++.....+.|.|..... + |.|+|.+.|....
T Consensus 164 v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 164 VYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp EEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred EEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 99999 66554321 11122234688887775 4 9999999997654
No 307
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.82 E-value=2.2e-19 Score=144.21 Aligned_cols=179 Identities=18% Similarity=0.279 Sum_probs=117.6
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+....+.+|++++|.|.+.+.+ ...+.|+|.+.......+.....+... ...+|+.+..+...+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 5566789999999999998764 478999997532111111111111100 1346777766434456799999999
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcccc
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALS 226 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~ 226 (384)
.+|+|.|+|.+.+.. .......|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.|++++..+..
T Consensus 87 ~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~ 163 (210)
T 3d9a_H 87 TEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV 163 (210)
T ss_dssp GGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECC-TTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred cccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecC-CcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccce
Confidence 999999999997532 223345666653 232221111 1225689999999999885 877 9999998865321
Q ss_pred c-------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 227 T-------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 227 ~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
. .+.......|.|.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~ 204 (210)
T 3d9a_H 164 HTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST 204 (210)
T ss_dssp EECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred EEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence 1 0122234568998888877 99999999987654
No 308
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.82 E-value=5.6e-19 Score=143.67 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=118.1
Q ss_pred CcceeeeccCcEEEEEEeecCCC----ccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+....+.+|++|+|.|.+.+.+. ..+.|+|.........+......... ...+|+.+..+...+...|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 55677899999999999987653 78999997533211111111111111 12467887765445678999999
Q ss_pred cCCCCCeeEEEEEEEccC------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEE
Q psy16652 151 IQETDAGIYKCEVIISLN------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TIS 216 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~ 216 (384)
++.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+ ...+.+|+.+.|.|.+.+. |.+ .+.
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~-~~~~~~g~~~~l~C~~~g~~P~p~~v~ 165 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAP-VCGDTTGSSVTLGCLVKGYFPEPVTLT 165 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecc-cccccCCCCEEEEEEEccEeCCCEEEE
Confidence 999999999999986543 1 122346777763 233322211 2235689999999999875 777 999
Q ss_pred EEeCCCcccccC-------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 217 WRRDNSAALSTG-------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 217 W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
|++++..+.... +.......|.|.....++ |.|+|.|.|..+..
T Consensus 166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~ 216 (228)
T 3bae_H 166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASST 216 (228)
T ss_dssp EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCC
Confidence 999886532110 112234568998888866 99999999987653
No 309
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.82 E-value=8e-19 Score=144.16 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=110.7
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~ 251 (384)
+....+.+|++++|.|.+.+.+.+.+.|+++.. ... ...+... ....|.|.+++.+|+|.|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 87 (242)
T 2znx_A 8 PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF 87 (242)
T ss_dssp CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEE
Confidence 455678999999999999988888999998542 110 0111111 1237999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEecCe-------------EEecCCCcccccCCcEEEEEEEeccC--CCeEEEEEC--CEEe
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEFAPV-------------ITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKD--GVQI 314 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~ 314 (384)
|.+.+..+........|.|..+|. ....+....+.+|+.++|.|.+.+.| .+.+.|+++ +..+
T Consensus 88 C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~ 167 (242)
T 2znx_A 88 CQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRL 167 (242)
T ss_dssp EEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCE
T ss_pred EeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCc
Confidence 999987543223345677766542 22233345688999999999999876 468999984 2222
Q ss_pred c----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 315 M----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 315 ~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
. ...++.+... ......+|+|.+++.+|+|.|.|.|.|.
T Consensus 168 ~~l~~~~~~g~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 168 EYMGYVSYSGSTYYNPSLKSRISITRD---TSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEECTTSCEEECGGGTTCEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred EEEEEEecCCccccCccccCcEEEEec---CCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 0 1223332210 1113458999999999999999999984
No 310
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.81 E-value=2.7e-19 Score=147.91 Aligned_cols=188 Identities=17% Similarity=0.285 Sum_probs=121.4
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+. +...+.|+|.........+.... .+.. ....+|+.+..+...+..+|.|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 456778999999999999763 35689999976442222221111 1110 1234688887755567889999999
Q ss_pred CCCCCeeEEEEEEEcc---CcceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCC
Q psy16652 152 QETDAGIYKCEVIISL---NNKVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNS 222 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~ 222 (384)
+.+|+|.|+|.+.+.. .........|.|. .+|.+... .....+..|+.+.|.|.+.+ +|.+ .+.|++++.
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE-CC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe-cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999997542 1223444567775 23333211 22233557999999999987 6766 899999886
Q ss_pred ccc-------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 223 AAL-------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 223 ~~~-------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
... ...+.....+.|.|.....+| |.|+|.|.|..+.. .....+.
T Consensus 166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~-~~~~~~~ 217 (253)
T 3liz_H 166 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST-KVDKKIV 217 (253)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTE-EEEEECC
T ss_pred ecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCc-ceEEEec
Confidence 321 111233334679999999999 99999999976653 3333433
No 311
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.81 E-value=6.5e-19 Score=142.44 Aligned_cols=168 Identities=20% Similarity=0.291 Sum_probs=113.6
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+.+ .+.+.|++... ... ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence 46788999999999998755 56899998542 110 01112111 23899999999
Q ss_pred CCCeEEEEEEEeCCCC--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CC--CeEEEEECCEEec
Q psy16652 245 TDRGTYYCVAQNGVGR--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PP--PAIVWIKDGVQIM 315 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~~~ 315 (384)
+|+|.|.|.+.+..+. .......|.|.. +|.+...+ ...+..|+.++|.|.+.+. |. +.+.|++++..+.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~ 167 (220)
T 2fbj_H 89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDIT 167 (220)
T ss_dssp GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCE
T ss_pred hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecc
Confidence 9999999999986442 112334666653 45665544 3456789999999999886 76 6999999987652
Q ss_pred CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
.. .........+.....+.|.|.....+|.|.|+|.|.|..|+..
T Consensus 168 ~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 168 TV-NFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EE-ECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred eE-ecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 10 0000001111111234688988888999999999999998765
No 312
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.81 E-value=6.5e-19 Score=147.92 Aligned_cols=189 Identities=15% Similarity=0.226 Sum_probs=123.9
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccC-c-e---eeeCCceEEeeCCCCceEE
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG-S-L---IIHDSRFQLTTDPETSTYI 145 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~ 145 (384)
..+.+...+..+.+.+|++|+|.|.+.+.+...+.|++.+.......+...... . . ....+|+.+..+ .....+
T Consensus 23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~s 101 (279)
T 2wbj_D 23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-SLTLST 101 (279)
T ss_dssp CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-SSSEEE
T ss_pred ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-CCCEEE
Confidence 456778888889999999999999997777789999998643221211111110 0 0 013467877764 356789
Q ss_pred EEEeecCCCCCeeEEEEEEEccC-----cceeeeEEEEEecC------CccccCCCceEEeecCceEEEEEEeccc-CC-
Q psy16652 146 LSIKEIQETDAGIYKCEVIISLN-----NKVSAEVELIVRRP------PIISDNSTRSVIVSEGQTVYLYCYANGF-PA- 212 (384)
Q Consensus 146 L~i~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~- 212 (384)
|.|.+++.+|+|.|+|.+.+..+ ......+.|.|... |.+....+....+.+|+.+.|.|.+.+. |.
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 99999999999999999987321 11233456777642 2222111111123368999999999875 54
Q ss_pred CeEEEEeCCCcccccC---------------ceeEeccEEEEcCCCCCC-CeEEEEEEEeCCCC
Q psy16652 213 PTISWRRDNSAALSTG---------------GSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260 (384)
Q Consensus 213 ~~v~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~ 260 (384)
+.+.|++++..+.... +.......|.|.....+| .|.|+|.|.|....
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 6999999987654321 111223458888877754 77899999996543
No 313
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.81 E-value=4.6e-19 Score=143.86 Aligned_cols=170 Identities=18% Similarity=0.286 Sum_probs=113.7
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (225)
T 1op3_H 9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV 88 (225)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 5789999864 2110 01122111 24899999999
Q ss_pred CCCeEEEEEEEeCCC-----C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECC
Q psy16652 245 TDRGTYYCVAQNGVG-----R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDG 311 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~ 311 (384)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.|. |.+ .+.|++++
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 168 (225)
T 1op3_H 89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA 168 (225)
T ss_dssp GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTS
T ss_pred hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCC
Confidence 999999999998754 1 112345677764 3555543433345689999999999986 776 99999998
Q ss_pred EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 312 VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
..+... .........+.....+.|.|.....+| |.|+|.|.|..+.....
T Consensus 169 ~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 218 (225)
T 1op3_H 169 LTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 218 (225)
T ss_dssp CCTTCE-ECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred CcCCeE-ecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence 653211 000000111111224568999988888 99999999987765544
No 314
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.81 E-value=1.5e-18 Score=145.94 Aligned_cols=176 Identities=19% Similarity=0.321 Sum_probs=117.6
Q ss_pred ceEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNIT 243 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~ 243 (384)
....+.+|++++|.|.+.+.+ .+.+.|++++.. .. ...+.... ...|.|.+++
T Consensus 34 ~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 113 (282)
T 1qok_A 34 GAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLT 113 (282)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCC
Confidence 356789999999999998764 578999996421 10 01122111 2479999999
Q ss_pred CCCCeEEEEEEEeCCCC----ceeeEEEEEEEecC---------------eEEecCCCcccccCCcEEEEEEEeccCCCe
Q psy16652 244 KTDRGTYYCVAQNGVGR----GMKRNIAVEVEFAP---------------VITINRPRQGQALQYDAILECHVEAYPPPA 304 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 304 (384)
.+|+|.|+|.+.+..+. .......|.|..+| .+...+....+.+|+.++|.|.+.+.| +.
T Consensus 114 ~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~ 192 (282)
T 1qok_A 114 SEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SY 192 (282)
T ss_dssp GGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SC
T ss_pred hhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ce
Confidence 99999999999987651 11233466666543 334445556788999999999999988 89
Q ss_pred EEEEE--CCEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy16652 305 IVWIK--DGVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA-QKEIELFDR 369 (384)
Q Consensus 305 v~W~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 369 (384)
+.|++ +|..+. ...++.... .....+|+|.+++.+|+|.|.|.|.|..+.. .....|.|.
T Consensus 193 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 193 MHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEECCCCCcEEEEEEecCCCCcccCCeEEec-----CCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 99999 554431 123333221 1134579999999999999999999864322 223566666
Q ss_pred eee
Q psy16652 370 ETQ 372 (384)
Q Consensus 370 ~~~ 372 (384)
+..
T Consensus 268 ~~~ 270 (282)
T 1qok_A 268 RAA 270 (282)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 315
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.81 E-value=7.2e-19 Score=145.80 Aligned_cols=165 Identities=18% Similarity=0.293 Sum_probs=113.5
Q ss_pred CCceEEeecCceEEEEEEecc--cCCCeEEEEeCCCcccc-------------------cCceeEe------ccEEEEcC
Q psy16652 189 STRSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALS-------------------TGGSIYR------GNILKIPN 241 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~-------------------~~~~~~~------~~~l~i~~ 241 (384)
.+..+.+.+|++++|.|.+.+ .+.+.+.|++....... ..+.... ...|.|.+
T Consensus 12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 91 (256)
T 3juy_B 12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 91 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence 356677999999999999977 35678999974311100 0111111 23699999
Q ss_pred CCCCCCeEEEEEEEeC-----------CCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEE
Q psy16652 242 ITKTDRGTYYCVAQNG-----------VGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILEC 295 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C 295 (384)
++.+|+|.|.|.+.+. ..........|.|.. +|.+...+....+.+|+.++|.|
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 171 (256)
T 3juy_B 92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSC 171 (256)
T ss_dssp CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEE
T ss_pred CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEE
Confidence 9999999999999986 112223345666765 34455556677888999999999
Q ss_pred EEeccCC-CeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCc
Q psy16652 296 HVEAYPP-PAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358 (384)
Q Consensus 296 ~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 358 (384)
.+.+.|. +.+.|++. +..+. ...++.... .....+|+|.+++.+|+|.|.|.|.|..+
T Consensus 172 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 172 RSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG-----SGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp EESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred EECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc-----cCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 9998776 89999983 22211 122333221 11345699999999999999999999644
No 316
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.81 E-value=3.5e-18 Score=141.60 Aligned_cols=177 Identities=16% Similarity=0.224 Sum_probs=119.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc---------------cCceeE------eccEEEEcCCCCCCCe
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS---------------TGGSIY------RGNILKIPNITKTDRG 248 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~---------------~~~~~~------~~~~l~i~~~~~~d~G 248 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++....... ..+... ...+|.|.+++.+|+|
T Consensus 10 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG 89 (256)
T 3tf7_C 10 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSA 89 (256)
T ss_dssp CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCS
T ss_pred CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCE
Confidence 5567789999999999998888899999984321100 011111 1337999999999999
Q ss_pred EEEEEEEeCCCCc---eeeEEEEEEEe--------------------cCeEEecCCCcccccCCcEEEEEEEeccCCCeE
Q psy16652 249 TYYCVAQNGVGRG---MKRNIAVEVEF--------------------APVITINRPRQGQALQYDAILECHVEAYPPPAI 305 (384)
Q Consensus 249 ~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 305 (384)
.|+|.+.+..+.. ......|.|.. +|.+...+....+.+|+.++|.|.+.+. .+.+
T Consensus 90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v 168 (256)
T 3tf7_C 90 VYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYM 168 (256)
T ss_dssp EEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSEE
T ss_pred EEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEE
Confidence 9999999865421 12234566654 4556666666777899999999999886 6799
Q ss_pred EEEECC--EEe---c------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEE--EEEE
Q psy16652 306 VWIKDG--VQI---M------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK--EIEL 366 (384)
Q Consensus 306 ~W~~~~--~~~---~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l 366 (384)
.|++.. ..+ . ..+++.... ......+|+|.+++.+|+|.|.|.|.|..|.... -..|
T Consensus 169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l 244 (256)
T 3tf7_C 169 YWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATR----TTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKL 244 (256)
T ss_dssp EEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEEC----CSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEE
T ss_pred EEEEECCCCCeEEEEEEcCCCceecCccCCceEEEe----CCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEE
Confidence 999832 111 0 011222111 1123567999999999999999999998774422 2345
Q ss_pred EEeee
Q psy16652 367 FDRET 371 (384)
Q Consensus 367 ~v~~~ 371 (384)
.|...
T Consensus 245 ~v~~~ 249 (256)
T 3tf7_C 245 TVLEL 249 (256)
T ss_dssp EEECG
T ss_pred EEEcc
Confidence 55544
No 317
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.81 E-value=2.3e-18 Score=139.46 Aligned_cols=171 Identities=16% Similarity=0.282 Sum_probs=115.2
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|+++.|.|.+.+.+ .+.+.|++... ... ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 88 (223)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence 45688999999999998754 46899998542 110 01112111 23799999999
Q ss_pred CCCeEEEEEEEeCCC---C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEE-CCE
Q psy16652 245 TDRGTYYCVAQNGVG---R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIK-DGV 312 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~-~~~ 312 (384)
+|+|.|.|.+.+..+ . .......|.|.. +|.+...++...+..|+.++|.|.+.+. |.+ .+.|++ +|.
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (223)
T 1dee_B 89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS 168 (223)
T ss_dssp GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence 999999999998643 1 112334677763 4555543333445789999999999886 777 999999 888
Q ss_pred EecCCCceeee-eeeccCccccceEEEeecCC--CCCeEEEEEEEeCCcceEEEE
Q psy16652 313 QIMNNQHYSVS-HFATSDEFSDTSLRVITIER--RQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 313 ~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
.+.. . .... ....+.....+.|+|..... +|.|.|+|.|.|..|.....+
T Consensus 169 ~l~~-~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 169 DISS-T-RGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp BCSC-E-EECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred ccce-e-EECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 7754 1 0000 00111112245688887776 789999999999999877654
No 318
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.80 E-value=1.4e-18 Score=141.57 Aligned_cols=180 Identities=16% Similarity=0.210 Sum_probs=112.8
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL----------------STGGSIYR------GNILKIPNITKT 245 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~----------------~~~~~~~~------~~~l~i~~~~~~ 245 (384)
...+.+|++++|.|.+.+.+ .+.+.|++... ... ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (232)
T ss_dssp CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence 35688999999999997754 56899998542 110 01122111 128999999999
Q ss_pred CCeEEEEEEEeCC--CC---ceeeEEEEEEEe----cCeEEecCCCcccccC-CcEEEEEEEecc-CCC-eEEEEE-CCE
Q psy16652 246 DRGTYYCVAQNGV--GR---GMKRNIAVEVEF----APVITINRPRQGQALQ-YDAILECHVEAY-PPP-AIVWIK-DGV 312 (384)
Q Consensus 246 d~G~Y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~v~W~~-~~~ 312 (384)
|+|.|.|.+.+.. +. .......|.|.. +|.+....+...+..| +.++|.|.+.+. |.+ .+.|++ +|.
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~ 168 (232)
T 1dn0_B 89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS 168 (232)
T ss_dssp GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence 9999999998421 11 112335677754 3555443333334577 899999999885 776 999999 988
Q ss_pred EecCCCceeeeeeeccCccccceEEEeecCC--CCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIER--RQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.+.. ..........+.....+.|.|..... +|.|.|+|.|.|..+.......+.|..+.
T Consensus 169 ~l~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~~~ 229 (232)
T 1dn0_B 169 DISS-TRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIAEL 229 (232)
T ss_dssp EECC-EEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC----
T ss_pred ceee-EEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCCCCC
Confidence 8754 10000000111112245688888876 78999999999999988777777766543
No 319
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.80 E-value=5.8e-20 Score=150.15 Aligned_cols=166 Identities=17% Similarity=0.248 Sum_probs=112.4
Q ss_pred eecCceEEEEEEeccc---CCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 195 VSEGQTVYLYCYANGF---PAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~---~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+|++++|.|.+.+. |.+ .+.|++++..+... .+.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 5689999999999876 666 89999988654321 1112234579999999999999999999987653
Q ss_pred -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec-cCC-CeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA-YPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
..+.+.+ .+..+|.+.+.+.......|+.++|.|.+.| +|+ +.+.|++||..+.............+.....+.|
T Consensus 109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l 188 (239)
T 1i1c_A 109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKL 188 (239)
T ss_dssp CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEE
Confidence 2223332 4556788776655544445889999999998 555 3899999999885322111111111111222345
Q ss_pred EEeecCCCCCeEEEEEEEeCCcce
Q psy16652 337 RVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
.|.....+|.|.|+|.|.|.....
T Consensus 189 ~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 189 NVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp EEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EEChhhcCCCCEEEEEEECCCCCC
Confidence 565555667999999999987654
No 320
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.80 E-value=1.3e-18 Score=143.45 Aligned_cols=172 Identities=17% Similarity=0.223 Sum_probs=117.2
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCC----------------Cccccc---CceeE-----eccEEEEcCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN----------------SAALST---GGSIY-----RGNILKIPNITKT 245 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~----------------~~~~~~---~~~~~-----~~~~l~i~~~~~~ 245 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++.. ...... .+... ....|.|.+++.+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 87 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 87 (246)
T ss_dssp CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence 45567899999999999988888899999822 111111 11111 1237999999999
Q ss_pred CCeEEEEEEEeCCC---CceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEeccCCC--eEEEEECCEE
Q psy16652 246 DRGTYYCVAQNGVG---RGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQ 313 (384)
Q Consensus 246 d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~ 313 (384)
|+|.|+|.+.+..+ ........|.|.. +|.+.+. +....+..|+.++|.|.+.|.|++ .+.|+++|..
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 167 (246)
T 4dzb_B 88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE 167 (246)
T ss_dssp GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence 99999999987532 1122344566653 5665543 334456679999999999986655 8999999999
Q ss_pred ecCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652 314 IMNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361 (384)
Q Consensus 314 ~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 361 (384)
+........... ..+.....+.|.|.....+| .|.|+|.|.|......
T Consensus 168 l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 168 VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 875433221111 01111123458888888888 9999999999877665
No 321
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.80 E-value=2.4e-19 Score=148.82 Aligned_cols=179 Identities=17% Similarity=0.227 Sum_probs=114.4
Q ss_pred eEEeecCceEEEEEEeccc--CCCeEEEEeCCCccc--c----------------cCceeEe------ccEEEEcCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAAL--S----------------TGGSIYR------GNILKIPNITKT 245 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~--~----------------~~~~~~~------~~~l~i~~~~~~ 245 (384)
...+.+|++++|.|.+.+. +.+.+.|++...... . ..+.... ...|.|.+++.+
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 96 (257)
T 3gkz_A 17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE 96 (257)
T ss_dssp CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence 3458899999999999873 467899998432110 0 0111111 127999999999
Q ss_pred CCeEEEEEEEeCCCCc---eeeEEEEEEEec--------------CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEE
Q psy16652 246 DRGTYYCVAQNGVGRG---MKRNIAVEVEFA--------------PVITINRPRQGQALQYDAILECHVEAYPPP-AIVW 307 (384)
Q Consensus 246 d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W 307 (384)
|+|.|+|.+.+..+.. ......|.|..+ +.+...+....+.+|+.++|.|.+.+.+.+ .+.|
T Consensus 97 DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W 176 (257)
T 3gkz_A 97 DTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYW 176 (257)
T ss_dssp GCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEE
T ss_pred hCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEE
Confidence 9999999999862211 233455666654 445555555778899999999999998887 8999
Q ss_pred EEC--CEEec---C---------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EEEEEEEeeee
Q psy16652 308 IKD--GVQIM---N---------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KEIELFDRETQ 372 (384)
Q Consensus 308 ~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~~ 372 (384)
+++ +..+. . ..++.... .....+|+|.+++.+|+|.|.|.|.|.....- .-..|.|...+
T Consensus 177 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~ 251 (257)
T 3gkz_A 177 YQQKPGSSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRAP 251 (257)
T ss_dssp EEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC-
T ss_pred EEECCCCCcEEEEEEccccCCCcCCCEEEec-----CCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeCC
Confidence 983 22211 0 12222211 11345699999999999999999998543221 12356666554
Q ss_pred cCC
Q psy16652 373 TGD 375 (384)
Q Consensus 373 ~~~ 375 (384)
+.|
T Consensus 252 ~~~ 254 (257)
T 3gkz_A 252 HHH 254 (257)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 322
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.80 E-value=2.3e-19 Score=143.01 Aligned_cols=153 Identities=16% Similarity=0.251 Sum_probs=104.6
Q ss_pred eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEE
Q psy16652 84 KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 163 (384)
+.+|++|+|.|.+ +.+.+.|+|++... . .. . ....+|.|.+++.+|+|.|+|.+
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l-------~-------~~------~---~~~~~L~i~~v~~~DsG~Y~C~~ 68 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMI-------G-------FL------T---EDKKKWNLGSNAKDPRGMYQCKG 68 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEE-------E-------EE------E---SSCCCEEEEEGGGCCEEEEEEES
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEEC-------C-------CC------C---CCCCeEEeCCCCcCCCEEEEEEe
Confidence 4689999999998 67799999976431 0 00 0 11236999999999999999996
Q ss_pred EEccCcceeeeEEEEEec-------------------------------CCccccCCCceEEeecCceEEEEEEecccCC
Q psy16652 164 IISLNNKVSAEVELIVRR-------------------------------PPIISDNSTRSVIVSEGQTVYLYCYANGFPA 212 (384)
Q Consensus 164 ~~~~~~~~~~~~~l~v~~-------------------------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 212 (384)
.+ ..+..+.|.+.. ++.+. . .+.....+|+++.|.|. +.|.
T Consensus 69 ~~----~~s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~p~~v~~~G~~v~L~C~--g~p~ 140 (204)
T 1sy6_A 69 SQ----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT-Q-TPYKVSISGTTVILTCP--QYPG 140 (204)
T ss_dssp SS----SCCCCEEEEEEC-------------------------------------C-CCCEEEEETTEEEEECS--CCCS
T ss_pred cC----CCCeeEEEEEEEecccccccccccccccccccccccccccccccccee-c-CCceeeecCCcEEEEcC--CCCC
Confidence 32 122334454430 11111 1 11222238999999998 7788
Q ss_pred CeEEEEeCCCcccccC---ceeEeccEEEEcCC-CCCCCeEEEEEEEeCCCCceeeEEEEEE
Q psy16652 213 PTISWRRDNSAALSTG---GSIYRGNILKIPNI-TKTDRGTYYCVAQNGVGRGMKRNIAVEV 270 (384)
Q Consensus 213 ~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 270 (384)
+.+.|++++..+.... .....+..|.|.++ +.+|+|.|+|.|.|..|...+..+.|.+
T Consensus 141 p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 141 SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp SCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 8999999987764431 12235789999999 9999999999999988864455555554
No 323
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=145.81 Aligned_cols=181 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCce---eeeCC-ceEEeeCCCCceEEEEEee
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDS-RFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~L~i~~ 150 (384)
+...+..+.+.+|++|+|.|.+.+.+...+.|+|.........+........ ....+ |+.+..+... . |.|.+
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~-L~I~~ 80 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--E-LRLQV 80 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSS--C-CEEEE
T ss_pred EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCC--e-EEEcc
Confidence 4455667789999999999998777788999999654322222222221111 11223 7777664322 2 99999
Q ss_pred cCCCCCeeEEEEEEEccCc-----ceeeeEEEEEecC------CccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652 151 IQETDAGIYKCEVIISLNN-----KVSAEVELIVRRP------PIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW 217 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~~------~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W 217 (384)
++.+|+|.|+|.+.+..++ .......|.|... |.+....+....+..|+.+.|.|.+.+ +|.+ .+.|
T Consensus 81 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W 160 (253)
T 3to4_D 81 ANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (253)
T ss_dssp ESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence 9999999999999754321 2233456666532 221111111111224689999999988 6666 8999
Q ss_pred EeCCCccccc---------------CceeEeccEEEEcCCCCCC-CeEEEEEEEeCC
Q psy16652 218 RRDNSAALST---------------GGSIYRGNILKIPNITKTD-RGTYYCVAQNGV 258 (384)
Q Consensus 218 ~~~~~~~~~~---------------~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~ 258 (384)
++++..+... ++.....+.|.|.....+| +|.|+|.|.|..
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 9988766432 2222233468888777777 779999999864
No 324
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.80 E-value=2e-18 Score=141.70 Aligned_cols=164 Identities=15% Similarity=0.178 Sum_probs=113.1
Q ss_pred CceEEeecCceEEEEEEecccC----CCeEEEEeCCC--ccc---c---------cCceeE----eccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP----APTISWRRDNS--AAL---S---------TGGSIY----RGNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~--~~~---~---------~~~~~~----~~~~l~i~~~~~~d~ 247 (384)
+....+.+|+++.|.|.+.+.+ .+.+.|+++.. ... . ..+... ...+|.|.+++.+|+
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 87 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (240)
T ss_dssp CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence 4556789999999999998877 67899999632 110 0 011111 122799999999999
Q ss_pred eEEEEEEEeCCCCceeeEEEEEEEecC------eEEecCCCcccccCCcEEEEEEEeccCC--CeEEEEEC--CEEec--
Q psy16652 248 GTYYCVAQNGVGRGMKRNIAVEVEFAP------VITINRPRQGQALQYDAILECHVEAYPP--PAIVWIKD--GVQIM-- 315 (384)
Q Consensus 248 G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~--~~~~~-- 315 (384)
|.|+|.+.+..+........|.|..++ .+...+....+.+|+.++|.|.+.+.|. +.+.|+++ +..+.
T Consensus 88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~ 167 (240)
T 1moe_A 88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI 167 (240)
T ss_dssp EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence 999999998755433445667776643 2333455667889999999999999874 58999995 22210
Q ss_pred ---------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 316 ---------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 316 ---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
...++.+... ......+|.|.+++.+|+|.|.|.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 168 GRIDPANGNSKYVPKFQGKATITAD---TSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp EEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred EEEcccCCccccCccccccEEEEEc---ccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 1123322211 1123467999999999999999999953
No 325
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.4e-18 Score=140.08 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=109.6
Q ss_pred CceEEeecCceEEEEEEeccc--CCCeEEEEeCCCc--cc------------ccCceeE----eccEEEEcCCCCCCCeE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSA--AL------------STGGSIY----RGNILKIPNITKTDRGT 249 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~d~G~ 249 (384)
+....+.+|++++|.|.+.+. +.+.+.|++.... .. ...+... ....|.|.+++.+|+|.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~ 88 (256)
T 3ux9_B 9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD 88 (256)
T ss_dssp CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence 345778999999999999876 6779999985321 10 0011111 12379999999999999
Q ss_pred EEEEEEeCCCCc--eeeEEEEEEEecC---------------------eEEecCCCcccccCCcEEEEEEEeccC--CCe
Q psy16652 250 YYCVAQNGVGRG--MKRNIAVEVEFAP---------------------VITINRPRQGQALQYDAILECHVEAYP--PPA 304 (384)
Q Consensus 250 Y~C~~~~~~~~~--~~~~~~l~v~~~p---------------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~ 304 (384)
|+|.+.+..+.. ......|.|..++ .+. .++...+.+|+.++|.|.+.+.+ .+.
T Consensus 89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 167 (256)
T 3ux9_B 89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA 167 (256)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence 999999864421 2234566666544 222 23344588999999999999876 679
Q ss_pred EEEEEC--CEEe------c-----------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 305 IVWIKD--GVQI------M-----------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 305 v~W~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
+.|+++ +..+ . ...++.+.... .....+|+|.+++.+|+|.|.|.|.|..
T Consensus 168 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 168 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDN---SKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEET---TTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecC---CCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 999986 3221 0 11233332211 1134569999999999999999999974
No 326
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.80 E-value=4.8e-19 Score=144.06 Aligned_cols=172 Identities=20% Similarity=0.319 Sum_probs=113.1
Q ss_pred eEEeecCceEEEEEEecccCC----CeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFPA----PTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNIT 243 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~~----~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~ 243 (384)
...+.+|++++|.|.+.+.+. +.+.|++.. .... ...+.... ...|.|.+++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 88 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD 88 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence 346889999999999987664 789999853 2110 01111111 2589999999
Q ss_pred CCCCeEEEEEEEeCCC------C--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEE
Q psy16652 244 KTDRGTYYCVAQNGVG------R--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIK 309 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~ 309 (384)
.+|+|.|.|.+.+..+ . .......|.|. .+|.+...++...+..|+.++|.|.+.+. |.+ .+.|++
T Consensus 89 ~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~ 168 (228)
T 3bae_H 89 TADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS 168 (228)
T ss_dssp GGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred cccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEee
Confidence 9999999999998654 1 11123566666 35666554444446789999999999885 777 999999
Q ss_pred CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
++..+......... ..+.....+.|.|.....+| |.|+|.|.|..|.......+
T Consensus 169 ~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 169 GSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp GTCCTTEEEEEEEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred CCcccCceEcCcee--CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 88653211110111 11111234568898888866 99999999999987665554
No 327
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.80 E-value=1.5e-19 Score=147.20 Aligned_cols=166 Identities=15% Similarity=0.206 Sum_probs=112.2
Q ss_pred EeecCceEEEEEEeccc-CC-C-eEEEEeCCCcc-cccC--------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 194 IVSEGQTVYLYCYANGF-PA-P-TISWRRDNSAA-LSTG--------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~~~-~~-~-~v~W~~~~~~~-~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
.+.+|+.+.|.|.+.+. |. + .+.|++++..+ .... +.......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 24 ~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 103 (231)
T 2w59_A 24 ELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELPL 103 (231)
T ss_dssp HHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCCC
Confidence 45789999999999884 63 4 99999988776 2211 111233479999999999999999999976542
Q ss_pred eeeEEEEEE----EecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceee--eee--------
Q psy16652 262 MKRNIAVEV----EFAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSV--SHF-------- 325 (384)
Q Consensus 262 ~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~--~~~-------- 325 (384)
.....+.+ ..+|.+.+.++......+..++|.|.+.|. | .+.|.|+++|..+........ ...
T Consensus 104 -~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~ 182 (231)
T 2w59_A 104 -PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAG 182 (231)
T ss_dssp -CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC--
T ss_pred -ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccC
Confidence 22223322 246766654433222345679999999985 4 368999999999865541111 111
Q ss_pred ec-cCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 326 AT-SDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 326 ~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
.. +.....+.|.|.....+|.|.|+|.|.|.....
T Consensus 183 ~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 183 GDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp -CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred CCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 11 222234668888888889999999999987654
No 328
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.80 E-value=7.9e-20 Score=146.37 Aligned_cols=164 Identities=15% Similarity=0.200 Sum_probs=102.5
Q ss_pred ecCceEEEEEEecccC----CCeEEEEeCCCcccccCc---eeEecc------EEEEcCCCCCCCeEEEEEEEeCCCCc-
Q psy16652 196 SEGQTVYLYCYANGFP----APTISWRRDNSAALSTGG---SIYRGN------ILKIPNITKTDRGTYYCVAQNGVGRG- 261 (384)
Q Consensus 196 ~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~---~~~~~~------~l~i~~~~~~d~G~Y~C~~~~~~~~~- 261 (384)
.+|+++.|.|.+.+.+ ...+.|++++..+..... ....++ .|.|.....+|+|.|+|.+.|..+..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 6899999999998764 249999999865532210 011122 23333333445999999999976653
Q ss_pred eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEE
Q psy16652 262 MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLR 337 (384)
Q Consensus 262 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (384)
....+.+ .+..+|.+.+.+.......++.+.|.|.+.|. |++ .+.|+++|..+.............+.....+.|.
T Consensus 96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~ 175 (207)
T 1l6x_A 96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT 175 (207)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEE
T ss_pred eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEE
Confidence 1222322 34567777665544433456679999999984 543 8999999998753221111111111112223455
Q ss_pred EeecCCCCCeEEEEEEEeCCcc
Q psy16652 338 VITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 338 i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
+.....+|.|.|+|.|.|....
T Consensus 176 i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 176 VDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEHHHHHTTCCEEEEEECTTSG
T ss_pred ECHHHcCCCCEEEEEEEcCCcC
Confidence 6666667899999999998654
No 329
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.79 E-value=5e-19 Score=137.96 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=107.3
Q ss_pred cceeeeccCcEEEEEEeec-CCCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
..+.+.+|++|+|.|.... .+...+.|++.+.. ....+...... ....+|+.+. ..+.+|.|.+++.+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~---~i~~~~~~~~~~~~~~~~~~R~~l~----~~~~sL~I~~v~~~ 79 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQ---KILEYFPNGKKTVFESVFKDRVDLD----KTNGALRIYNVSKE 79 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSC---EEEEECSSSCEEECSSTTTTTEEEC----TTTCCEEECSCCGG
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCe---EEEEEECCCCeeEcchhcCCeEEEe----CCCccEEEcCCCHH
Confidence 4456899999999999754 34678999985321 11111111111 0112566652 23457999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccCceeEe
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYR 233 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~ 233 (384)
|+|.|+|.+.+.. .....+.|.|..++.. +.. ...+..+.|.|.+ .+ |.+.+.|++++..+. ...
T Consensus 80 D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~-----P~i-~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~ 145 (180)
T 2dru_A 80 DRGDYYMRMLHET--EDQWKITMEVYEMVSK-----PMI-YWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLR 145 (180)
T ss_dssp GCEEEEEEEESSS--EEEEEEEEEEECCCCC-----CEE-EEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EES
T ss_pred HCeEEEEEEEcCC--eEEEEEEEEEECCCCC-----CEE-EecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCC
Confidence 9999999996433 5566778888765321 122 2345779999999 66 889999999987654 123
Q ss_pred ccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 234 GNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 234 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+.+|.+.. .+|+|.|+|.|.|..+..
T Consensus 146 ~~~l~~~~--~~d~g~Y~C~a~N~~~~~ 171 (180)
T 2dru_A 146 QKTMSYQW--TNLRAPFKCKAVNRVSQE 171 (180)
T ss_dssp SSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred CCEEEEEE--hhcCccEEEEEecCcCcc
Confidence 44666633 789999999999987654
No 330
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.79 E-value=3.6e-18 Score=140.76 Aligned_cols=164 Identities=15% Similarity=0.221 Sum_probs=110.0
Q ss_pred CceEEeecCceEEEEEEecccC-----CCeEEEEeCCC--ccc------------ccCceeE----eccEEEEcCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNS--AAL------------STGGSIY----RGNILKIPNITKTD 246 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d 246 (384)
+..+.+.+|+++.|.|.+.+.+ .+.+.|++... ... ...+... ....|.|.+++.+|
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 87 (247)
T 1svz_A 8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED 87 (247)
T ss_dssp CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence 4567789999999999998877 57899998532 110 0111111 12379999999999
Q ss_pred CeEEEEEEEeCCCCceeeEEEEEEEecC-------------eEEecCCCcccccCCcEEEEEEEeccC--CCeEEEEECC
Q psy16652 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAP-------------VITINRPRQGQALQYDAILECHVEAYP--PPAIVWIKDG 311 (384)
Q Consensus 247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~~ 311 (384)
+|.|+|.+.+..+........|.|..++ .....++...+.+|+.++|.|.+.+.+ .+.+.|++++
T Consensus 88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~ 167 (247)
T 1svz_A 88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA 167 (247)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence 9999999998754322334566666542 122233444588999999999999875 5689999963
Q ss_pred --EEec-----------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 312 --VQIM-----------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 312 --~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
..+. ...++.+... ......+|+|.+++.+|+|.|.|.|.|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLD---TSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCCCcEEEEEEEcCCCccccCccccCcEEEEEe---cCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 2110 0223332211 0113468999999999999999999996
No 331
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.79 E-value=2.4e-18 Score=141.95 Aligned_cols=179 Identities=18% Similarity=0.327 Sum_probs=105.4
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cc-e---eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GS-L---IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+.+ ...+.|++.........+..... +. . ....+|+.+..+...+...|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4456789999999999998754 56899999764321111111111 11 1 1134688887655567789999999
Q ss_pred CCCCCeeEEEEEEEccC----------c--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-
Q psy16652 152 QETDAGIYKCEVIISLN----------N--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP- 213 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~- 213 (384)
+.+|+|.|+|.+.+..+ . .....+.|.|.. +|.+....+ ...+.+|+.++|.|.+.+. |.+
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p-~~~~~~g~~v~L~C~~~g~~P~pi 165 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPV 165 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEEEEEBSSCC
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecC-cccccCCCcEEEEEEEeeEECCCc
Confidence 99999999999986542 1 122345777764 343332222 2235689999999999874 776
Q ss_pred eEEEEeCCCcccc--------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 214 TISWRRDNSAALS--------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 214 ~v~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.+.|++++..+.. ..+.......|.|.+...+| |.|+|.|.|...
T Consensus 166 ~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~ 218 (257)
T 3bn9_D 166 TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS 218 (257)
T ss_dssp EEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGG
T ss_pred EEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCC
Confidence 9999998875321 11112223467888887777 999999999543
No 332
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.79 E-value=1e-18 Score=139.25 Aligned_cols=176 Identities=19% Similarity=0.344 Sum_probs=111.7
Q ss_pred ceeeeccCcEEEEEEeec----CCCccEEEEEeCCCCCCcccceeccCce---eeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 81 EQIKDIAQTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSL---IIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 81 ~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
++.+.+|++|+|.|.+.. .+.+.+.|++++.. +.....+.. ....+|..+.. .+..+|.|.+++.
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~-----i~~~~~~~~~~~~~~~~r~~~~~---~~~~~L~I~~v~~ 74 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKM-----VLTMMSGDMNIWPEYKNRTIFDI---TNNLSIVILALRP 74 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEE-----EEEEETTEEEECHHHHTTEEEES---TTTTEEEECSCCG
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcE-----EEEEeCCceeecCcccceeEEcc---CCCcEEEEecccc
Confidence 456789999999999854 24568999997543 111111110 01123333311 2345799999999
Q ss_pred CCCeeEEEEEEEccCcce----eeeEEEEEecCCccccCCCceEEeecCceEEEEEEe-cccCCCeEEEEeCCCcccccC
Q psy16652 154 TDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTG 228 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~ 228 (384)
+|+|.|+|.+.+..+... ...+.|.|..++..+. ........|+.+.|.|.+ .+.|.|.+.|++++..+....
T Consensus 75 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~--~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~ 152 (201)
T 1dr9_A 75 SDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAIN 152 (201)
T ss_dssp GGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCE--EEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSE
T ss_pred hhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCc--eEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECcccc
Confidence 999999999997654433 3567777776532111 011122568899999999 489999999999987765432
Q ss_pred ceeEe--c-cE---EEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 229 GSIYR--G-NI---LKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 229 ~~~~~--~-~~---l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
..... . .. ..+..+..+|.|.|+|.|.|..+.. +..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~ 196 (201)
T 1dr9_A 153 TTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFN 196 (201)
T ss_dssp EEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEE
T ss_pred ceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEEe
Confidence 22211 1 11 1223455689999999999988765 44433
No 333
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.79 E-value=5.5e-18 Score=132.02 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=108.2
Q ss_pred CceEEeecCceEEEEEEecc-cCCCeEEEEeC-CCccc------------cc--CceeE--eccEEEEcCCCCCCCeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANG-FPAPTISWRRD-NSAAL------------ST--GGSIY--RGNILKIPNITKTDRGTYY 251 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~-~~~~~------------~~--~~~~~--~~~~l~i~~~~~~d~G~Y~ 251 (384)
...+.+.+|++++|.|.+.+ .+.+.+.|++. +..+. .. .+... .+..|.|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 34567899999999999854 34679999995 22211 00 11122 3457999999999999999
Q ss_pred EEEEeCCCCceeeEEEEEEEec---CeEEecCCCcccccCCcEEEEEEE-eccCCCeEEEEECCEEecCCCceeeeeeec
Q psy16652 252 CVAQNGVGRGMKRNIAVEVEFA---PVITINRPRQGQALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327 (384)
Q Consensus 252 C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 327 (384)
|.+.+.. .....+.|.|..+ |.+.. .+..++|.|.+ .| |.|.+.|++++..+..
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~----------- 143 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS----------- 143 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-----------
T ss_pred EEEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-----------
Confidence 9998765 3466777887654 33322 34569999999 66 9999999999988751
Q ss_pred cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 328 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
....+|.+.. .+|.|.|+|.|.|..|...+...+
T Consensus 144 ---~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 144 ---LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp ---ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred ---CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 0244566633 789999999999999988776544
No 334
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.79 E-value=4.3e-18 Score=140.95 Aligned_cols=180 Identities=16% Similarity=0.254 Sum_probs=117.6
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++|+|.|.+.+.+ ...+.|+|.........+..... +.. ....+|+.+..+.......|.|.+
T Consensus 12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 35677799999999999998765 57899999864211111111110 110 112468877764445678999999
Q ss_pred cCCCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCC
Q psy16652 151 IQETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNS 222 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~ 222 (384)
++.+|+|.|+|.+.+.... .....+.|.|.. +|.+....+. ..+.+|+.+.|.|.+.+ +|.+ .+.|++++.
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~ 170 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSL 170 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTC
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCC
Confidence 9999999999999854321 122445777764 2333221111 12567999999999987 4766 999999886
Q ss_pred ccccc--C-----ceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 223 AALST--G-----GSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 223 ~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.+... . +.......|.|.....+| |.|+|.|.|...
T Consensus 171 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~ 213 (261)
T 2xqy_G 171 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS 213 (261)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred cCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence 54211 0 122234579999888878 999999999543
No 335
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.78 E-value=6.2e-18 Score=131.54 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=107.8
Q ss_pred cceeeeccCcEEEEEEeec--CCCccEEEEE--eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQY--ADDYPVIWMK--MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETD 155 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 155 (384)
..+.+.+|++|+|.|.... .+...+.|++ ++.... .+..........+|+.+.. +.+|.|.+++.+|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~----~~~~~~~~~~~~~R~~~~~-----ngsL~I~~v~~~D 77 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIA----QFRKEKETFKEKDTYKLFK-----NGTLKIKHLKTDD 77 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEE----EECGGGCEEESCTTEEECT-----TSCEEECSCCGGG
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEE----EEeCccCCCCCCCeEEECC-----CCCEEECCCChhh
Confidence 4456789999999995432 3466899999 543210 0111111112456766653 2279999999999
Q ss_pred CeeEEEEEEEccCcce-eeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEec
Q psy16652 156 AGIYKCEVIISLNNKV-SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234 (384)
Q Consensus 156 ~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 234 (384)
+|.|+|.+.+..+... ...+.|.|..+.. .+... ..+..+.|.|.+.+.|.+.+.|++++..+ . ...
T Consensus 78 sG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~-----~P~i~-~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~ 145 (182)
T 1hnf_A 78 QDIYKVSIYDTKGKNVLEKIFDLKIQERVS-----KPKIS-WTCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQ 145 (182)
T ss_dssp CEEEEEEEEETTSCEEEEEEEEEEEECCCC-----CCEEE-EETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EES
T ss_pred CEEEEEEEEeCCCceeEEEEEEEEEcCcCC-----CCEEE-EccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCC
Confidence 9999999987655432 3567788875421 11222 23447999999988888899999998876 1 123
Q ss_pred cEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 235 NILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 235 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
..|.+.. ..+|+|.|+|.|.|..+..
T Consensus 146 ~~i~~~~-~~~d~G~Y~C~a~N~~~~~ 171 (182)
T 1hnf_A 146 RVITHKW-TTSLSAKFKCTAGNKVSKE 171 (182)
T ss_dssp SCEEEEC-CSCEEEEEEEEEECSSCEE
T ss_pred cEEEEec-ccCCCcEEEEEEEeCCCCc
Confidence 3444433 4789999999999998875
No 336
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.78 E-value=1.6e-18 Score=139.70 Aligned_cols=180 Identities=15% Similarity=0.214 Sum_probs=108.8
Q ss_pred eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
.+....+.+|++|+|.|.+.+. +...+.|++.........+........ ....+|+.+.. ......|.|.++
T Consensus 5 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v 82 (215)
T 3nl4_H 5 ESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISK--TSTTVDLKITSP 82 (215)
T ss_dssp EECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEE--CSSEEEEEESSC
T ss_pred cCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEe--eCCEEEEEECCC
Confidence 4556778999999999999763 467899999764322222211111111 12346887776 567789999999
Q ss_pred CCCCCeeEEEEEEEccCc---ceeeeEEEEEe----cCCccccCCCceEEeecCceEEEEEEecccCC--CeEEEEeCCC
Q psy16652 152 QETDAGIYKCEVIISLNN---KVSAEVELIVR----RPPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PTISWRRDNS 222 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~----~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~W~~~~~ 222 (384)
+.+|+|.|+|.+.+..+. .......|.|. .+|.+....+ ...+.+|+.+.|.|.+.+.++ ..+.|++++.
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 161 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAP-CCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTL 161 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECC-CTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecC-CccccCCCcEEEEEEEeeeeCCCeEEEEeeCCE
Confidence 999999999999755321 13444567775 2333321111 123557999999999987533 3688999886
Q ss_pred cccccCc--eeEeccEEEE---cCCCCCCCeEEEEEEEeCCCCc
Q psy16652 223 AALSTGG--SIYRGNILKI---PNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 223 ~~~~~~~--~~~~~~~l~i---~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
.+..... ....++.+.+ ..+...| |.|+|.|.|..+..
T Consensus 162 ~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~ 204 (215)
T 3nl4_H 162 TNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNT 204 (215)
T ss_dssp CTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTE
T ss_pred ECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCc
Confidence 4422111 1111222332 3355556 99999999976653
No 337
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.78 E-value=2.3e-18 Score=140.97 Aligned_cols=183 Identities=15% Similarity=0.252 Sum_probs=113.9
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEeec
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+...+..+.+.+|++|+|.|.+. .+...+.|+|.+.......+......... ...+|+.+..+ .....+|.|.++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~v 79 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP-SQEQFSLILELA 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECC-SSSEEEEEESSC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEec-CCCEEEEEEecC
Confidence 34557778899999999999984 35678999997643211111111111111 12467777653 356789999999
Q ss_pred CCCCCeeEEEEEEEccC----cceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEe
Q psy16652 152 QETDAGIYKCEVIISLN----NKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRR 219 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~ 219 (384)
+.+|+|.|+|.+.+..+ ........|.|.. +|.+....+....+.+|+.+.|.|.+.+. |.+ .+.|++
T Consensus 80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999985421 1122345677764 23332222222234579999999999885 655 999999
Q ss_pred CCCcccccCce----e-Eecc------EEEEcCCCCCC-CeEEEEEEEeCCC
Q psy16652 220 DNSAALSTGGS----I-YRGN------ILKIPNITKTD-RGTYYCVAQNGVG 259 (384)
Q Consensus 220 ~~~~~~~~~~~----~-~~~~------~l~i~~~~~~d-~G~Y~C~~~~~~~ 259 (384)
++..+...... . ..+. .|.|......| .|.|+|.|.|...
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 88765433211 1 1222 34444333333 6789999999643
No 338
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.78 E-value=1.8e-18 Score=121.95 Aligned_cols=96 Identities=24% Similarity=0.327 Sum_probs=82.6
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++||..+..+.++.+.... ....|.|.+++.+|+|.|+|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 86 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADG-----AEHGLLLTAALPTDAGVYVC 86 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEET-----TEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecC-----ceEEEEEecCChhhCEEEEE
Confidence 3677777777888999999999999999999999999999999888877654311 34579999999999999999
Q ss_pred EEEeCCcceEEEEEEEEeeee
Q psy16652 352 KAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.|.|..|....++.|.|.++|
T Consensus 87 ~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 87 RARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEETTEEEEEEEEEEEEC--
T ss_pred EEEECCCEEEEEEEEEEEcCC
Confidence 999999999999999998764
No 339
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.78 E-value=1.3e-19 Score=147.61 Aligned_cols=199 Identities=14% Similarity=0.176 Sum_probs=112.4
Q ss_pred eeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE-eecCceEEEEEEecccC----CCeEEEEeCCCccccc----
Q psy16652 157 GIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI-VSEGQTVYLYCYANGFP----APTISWRRDNSAALST---- 227 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~---- 227 (384)
|.|.|.+.+..... ..... ..+|.+....+.... +..|+.+.|.|.+.+.. ...+.|++++..+...
T Consensus 1 ~~~~~~~~~~~~~c---~~~~~-~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~ 76 (240)
T 4acp_A 1 GTKSCDKTHTCPPC---PAPEL-LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP 76 (240)
T ss_dssp --------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECC
T ss_pred CceeeeeeecCCCC---Ccccc-CCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceecc
Confidence 67889887543321 11111 112333222233333 45699999999998854 2379999998765321
Q ss_pred -----CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc-eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEec
Q psy16652 228 -----GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEA 299 (384)
Q Consensus 228 -----~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~ 299 (384)
++.....+.|.|.....+|+|.|+|.|.|..+.. ..+.+.+ .+..+|.+.+.+.......|+.+.|.|.+.+
T Consensus 77 ~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~g 156 (240)
T 4acp_A 77 REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKG 156 (240)
T ss_dssp CEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEE
T ss_pred ceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeE
Confidence 1122223468887777778999999999976532 2333332 2446788777666554445899999999998
Q ss_pred -cCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 300 -YPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 300 -~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
+|.+ .+.|+++|..+.............+.....+.|.+......|.|.|+|.|.+..-.
T Consensus 157 f~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l~ 218 (240)
T 4acp_A 157 FYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 218 (240)
T ss_dssp EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCCC
Confidence 5654 89999999987432211111122222223456777776667889999999998643
No 340
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.78 E-value=5.2e-18 Score=140.84 Aligned_cols=182 Identities=17% Similarity=0.243 Sum_probs=112.3
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc---ccC--------------ce------eEeccEEEEcCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL---STG--------------GS------IYRGNILKIPNITK 244 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~---~~~--------------~~------~~~~~~l~i~~~~~ 244 (384)
+..+.+.+|++++|.|.+.+.+.+.+.|++... ... ... +. ......|.|.+++.
T Consensus 9 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 88 (259)
T 3omz_A 9 TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIE 88 (259)
T ss_dssp --CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCG
T ss_pred CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCc
Confidence 456778999999999999888888999998321 110 000 00 01234699999999
Q ss_pred CCCeEEEEEEEeCCCC--ceeeEEEEEEEec-----------------CeEEecCCCcccccCCcEEEEEEEecc-CCCe
Q psy16652 245 TDRGTYYCVAQNGVGR--GMKRNIAVEVEFA-----------------PVITINRPRQGQALQYDAILECHVEAY-PPPA 304 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~-----------------p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~ 304 (384)
+|+|.|+|.+.+..+. .......|.|..+ |.+...+....+.+|+.++|.|.+.+. |.+.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~ 168 (259)
T 3omz_A 89 NDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY 168 (259)
T ss_dssp GGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred ccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence 9999999999986552 2233455666652 455555666788999999999999874 7789
Q ss_pred EEEEECCE--Eec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc-e----EEEEE
Q psy16652 305 IVWIKDGV--QIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS-A----QKEIE 365 (384)
Q Consensus 305 v~W~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~----~~~~~ 365 (384)
+.|++++. .+. ...++.+.. ........|+|.+++.+|+|.|.|.|.+..+. . ..-..
T Consensus 169 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~fg~GT~ 245 (259)
T 3omz_A 169 IFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNF---KKAAKSVALTISALQLEDSAKYFCALGESLTRADKLIFGKGTR 245 (259)
T ss_dssp EEEEEECTTCCEEEEEEEETTSCCCEETTEEECC---BGGGTBCCEEESSCCGGGCSEEEEEEESCSSTTCCCEECCCEE
T ss_pred EEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEE---cCcCCEEEEEECCCChhHCEEEEEEEeCccCCCCceEECCCCE
Confidence 99998531 110 012222211 01123467999999999999999999864221 1 11235
Q ss_pred EEEeeeecC
Q psy16652 366 LFDRETQTG 374 (384)
Q Consensus 366 l~v~~~~~~ 374 (384)
|.|.+.++.
T Consensus 246 l~v~~~~~~ 254 (259)
T 3omz_A 246 VTVEPRSQH 254 (259)
T ss_dssp EEEEC----
T ss_pred EEEeeCccc
Confidence 666665543
No 341
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.78 E-value=4e-18 Score=137.99 Aligned_cols=170 Identities=18% Similarity=0.327 Sum_probs=110.0
Q ss_pred ceEEeecCceEEEEEEecccC--CCeEEEEeCCCcccc---------------------cCceeEe------ccEEEEcC
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALS---------------------TGGSIYR------GNILKIPN 241 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~---------------------~~~~~~~------~~~l~i~~ 241 (384)
....+.+|+++.|.|.+.+.+ .+.+.|++....... ..+.... ...|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 87 (221)
T 3m8o_H 8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS 87 (221)
T ss_dssp SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence 345688999999999997643 568999974321100 0111111 12699999
Q ss_pred CCCCCCeEEEEEEEeCCC-CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCC-C-eEEEEECCEE
Q psy16652 242 ITKTDRGTYYCVAQNGVG-RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPP-P-AIVWIKDGVQ 313 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~v~W~~~~~~ 313 (384)
++.+|+|.|.|.+.+... ........|.|. .+|.+....+... ..|+.++|.|.+.+ .|. + .+.|+++|..
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~ 166 (221)
T 3m8o_H 88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQG 166 (221)
T ss_dssp CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTT
T ss_pred CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEE
Confidence 999999999999998631 222333455554 3455542222222 78999999999988 776 4 8999999876
Q ss_pred ecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 314 IMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
+.............+.....+.|+|.....+|.|.|+|.|.|..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 167 VTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp CEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred CceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 632110000000111111235689999999999999999999987644
No 342
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.78 E-value=1.2e-18 Score=140.45 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=107.4
Q ss_pred ceEEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc------------------cCceeE----eccEEEEcCCCCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS------------------TGGSIY----RGNILKIPNITKTD 246 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~------------------~~~~~~----~~~~l~i~~~~~~d 246 (384)
....+.+|++++|.|.+.+. +.+.+.|++....... ..+... ....|.|.+++.+|
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 86 (215)
T 3nl4_H 7 GGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTTED 86 (215)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCGGG
T ss_pred CCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCccc
Confidence 34568899999999999763 3568999974321110 011111 12369999999999
Q ss_pred CeEEEEEEEeCCCC---ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecCC
Q psy16652 247 RGTYYCVAQNGVGR---GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNN 317 (384)
Q Consensus 247 ~G~Y~C~~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~ 317 (384)
+|.|.|.+.+..+. .......|.|. .+|.+...++...+..|+.++|.|.+.+.+++ .+.|+++|..+...
T Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~ 166 (215)
T 3nl4_H 87 TATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTNGVR 166 (215)
T ss_dssp CEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred CEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEECCeE
Confidence 99999999987542 12333456665 56766655555567789999999999886443 68899998644321
Q ss_pred CceeeeeeeccCccccceEEE---eecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 318 QHYSVSHFATSDEFSDTSLRV---ITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
...... . .+..+.+ ..+...| |.|+|.|.|..|.......|.+
T Consensus 167 ~~~~~~--~-----~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 167 TFPSVR--Q-----SSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp ECCCEE--C-----TTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECCS
T ss_pred ecCceE--C-----CCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecCC
Confidence 111110 0 1223333 4566667 9999999999998777766653
No 343
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.78 E-value=9.1e-18 Score=138.18 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=116.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc----------------ccCceeE-----eccEEEEcCCCCCCCe
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL----------------STGGSIY-----RGNILKIPNITKTDRG 248 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~----------------~~~~~~~-----~~~~l~i~~~~~~d~G 248 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++...... ...+... ....|.|.+++.+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 87 (245)
T 3nfj_J 8 PATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLLSDSG 87 (245)
T ss_dssp CSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCGGGCE
T ss_pred CceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCChhhCE
Confidence 456778999999999999888888999998321100 0011111 1237999999999999
Q ss_pred EEEEEEEeCC-----CCceeeEEEEEEEe------cCeEEecCC-CcccccCCcEEEEEEEecc-CCC-eEEEEECCEEe
Q psy16652 249 TYYCVAQNGV-----GRGMKRNIAVEVEF------APVITINRP-RQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQI 314 (384)
Q Consensus 249 ~Y~C~~~~~~-----~~~~~~~~~l~v~~------~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~ 314 (384)
.|+|.+.+.. .........|.|.. +|.+.+.++ ...+..|+.++|.|.+.|. |++ .+.|+++|..+
T Consensus 88 ~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l 167 (245)
T 3nfj_J 88 FYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEV 167 (245)
T ss_dssp EEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred EEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEECCEEC
Confidence 9999999832 22223345666665 566654333 3345568999999999984 444 79999999998
Q ss_pred cCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceEEE
Q psy16652 315 MNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQKE 363 (384)
Q Consensus 315 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~ 363 (384)
........... ..+.....+.|.|.....+| .|.|+|.|.|........
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~~~ 223 (245)
T 3nfj_J 168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDE 223 (245)
T ss_dssp CTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSSSC
T ss_pred CCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCccc
Confidence 65432211110 11111223568888888888 679999999998766543
No 344
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.78 E-value=9.7e-18 Score=135.04 Aligned_cols=179 Identities=21% Similarity=0.280 Sum_probs=113.4
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCcee----eeCCceEEeeCCCCceEEEEEeecC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+....+.+|++|+|.|.+.+.+ ...+.|++.........+.....+... ...+|+.+..+...+..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5566789999999999998753 578999997643221212211111111 1246888776545567899999999
Q ss_pred CCCCeeEEEEEEEccCc--ceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeCCCcc
Q psy16652 153 ETDAGIYKCEVIISLNN--KVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAA 224 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~ 224 (384)
.+|+|.|+|.+.+..+. .....+.|.|.. +|.+....+. ..+.+|+.+.|.|.+.+. |.+ .+.|++++..+
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~ 165 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSS 165 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCC
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEccCCccC
Confidence 99999999999754321 223446777763 2322211111 124679999999999875 777 99999988653
Q ss_pred cccC-------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 225 LSTG-------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 225 ~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
.... +.......|. ....+| |.|+|.+.|..+..
T Consensus 166 ~~~~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 166 DVHTFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp SCCBCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTE
T ss_pred ceEecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCc
Confidence 2111 1111112333 344456 99999999977653
No 345
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.78 E-value=8.9e-18 Score=139.62 Aligned_cols=164 Identities=14% Similarity=0.212 Sum_probs=111.3
Q ss_pred CceEEeecCceEEEEEEecccC------CCeEEEEeCC--Cccc------------ccCceeEe----ccEEEEcCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP------APTISWRRDN--SAAL------------STGGSIYR----GNILKIPNITKT 245 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~------~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~ 245 (384)
+..+.+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ...+.... ...|.|.+++.+
T Consensus 12 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~ 91 (264)
T 2gjj_A 12 PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAE 91 (264)
T ss_dssp CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHH
Confidence 4567789999999999998876 5689999853 2111 01112111 238999999999
Q ss_pred CCeEEEEEEEeCCCCceeeEEEEEEEecC------------------eE-EecCCCcccccCCcEEEEEEEeccCC--Ce
Q psy16652 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAP------------------VI-TINRPRQGQALQYDAILECHVEAYPP--PA 304 (384)
Q Consensus 246 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~~~p~--~~ 304 (384)
|+|.|.|.+.+..+........|.|..+| .+ ...++...+.+|+.++|.|.+.+.+. +.
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 171 (264)
T 2gjj_A 92 DLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGYF 171 (264)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred HCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCeE
Confidence 99999999998654322334567776653 12 12233346889999999999998764 79
Q ss_pred EEEEECC--EE---ec----C----------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 305 IVWIKDG--VQ---IM----N----------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 305 v~W~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
+.|+++. .. +. . ..++.+... .......|+|.+++.+|+|.|.|.|.|.
T Consensus 172 v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 172 INWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVD---TSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEc---CCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 9999863 21 11 0 122222211 1123568999999999999999999995
No 346
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.78 E-value=5.7e-18 Score=139.02 Aligned_cols=176 Identities=19% Similarity=0.239 Sum_probs=114.1
Q ss_pred CceEEeecCceEEEEEEeccc--CCCeEEEEeCC--Cccc-----------------ccCceeE------eccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDN--SAAL-----------------STGGSIY------RGNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~--~~~~-----------------~~~~~~~------~~~~l~i~~~ 242 (384)
+..+.+.+|++++|.|.+.+. +.+.+.|++.. .... ...+... ....|.|.++
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 87 (242)
T 1hxm_B 8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV 87 (242)
T ss_dssp CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCC
Confidence 556778999999999999764 56789999854 2110 0111111 1347999999
Q ss_pred CCCCCeEEEEEEEeCCC-C-----ceeeEEEEEEEec-------CeEEec-CCCcccccCCcEEEEEEEecc-CC-CeEE
Q psy16652 243 TKTDRGTYYCVAQNGVG-R-----GMKRNIAVEVEFA-------PVITIN-RPRQGQALQYDAILECHVEAY-PP-PAIV 306 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~ 306 (384)
+.+|+|.|.|.+.+... . .......|.|... |...+. +....+..|+.++|.|.+.|. |. +.+.
T Consensus 88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~ 167 (242)
T 1hxm_B 88 EKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIH 167 (242)
T ss_dssp CGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEE
T ss_pred CcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEEE
Confidence 99999999999998531 1 1123456777652 333332 233445679999999999986 64 6899
Q ss_pred EEECCE-EecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 307 WIKDGV-QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 307 W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
|++++. .+......... ...+.....+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus 168 W~~~~~~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 168 WEEKKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp EEESSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred EEcCCCEeecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 999987 55332111111 1111122235688877665 4 9999999999988755555554
No 347
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.77 E-value=1.8e-18 Score=142.93 Aligned_cols=175 Identities=18% Similarity=0.308 Sum_probs=114.4
Q ss_pred eEEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc-------------------cCceeE------eccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS-------------------TGGSIY------RGNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~-------------------~~~~~~------~~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+. +...+.|++....... ..+... ....|.|.+++.
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS 88 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence 4568899999999999663 3467999985321100 011111 122599999999
Q ss_pred CCCeEEEEEEEeCCC---CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEec
Q psy16652 245 TDRGTYYCVAQNGVG---RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIM 315 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~ 315 (384)
+|+|.|.|.+.+... ........|.|. .+|.+...++...+..|+.++|.|.+.+ +|.+ .+.|++++..+.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~ 168 (253)
T 3liz_H 89 EDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 168 (253)
T ss_dssp GGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred hhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecc
Confidence 999999999987531 111233456665 4666665555555667999999999988 6766 899999986431
Q ss_pred CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
...... . ...+.....+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 169 ~~~~~~-~-~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 169 VHTFPA-V-LQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEECCC-E-EETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred eEeCCc-c-ccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 110000 0 011112234679999999999 99999999999988888887766
No 348
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.77 E-value=7.9e-18 Score=142.07 Aligned_cols=177 Identities=15% Similarity=0.280 Sum_probs=115.0
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+.+ .+.+.|++... ... ...+.... ...|.|.+++.
T Consensus 31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 110 (291)
T 2gki_A 31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS 110 (291)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence 46788999999999998765 46899998642 110 00111111 24799999999
Q ss_pred CCCeEEEEEEEeCC-CCc---eeeEEEEEEEe----------------cCeEEecCCCcccccCCcEEEEEEEeccCCC-
Q psy16652 245 TDRGTYYCVAQNGV-GRG---MKRNIAVEVEF----------------APVITINRPRQGQALQYDAILECHVEAYPPP- 303 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~-~~~---~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~- 303 (384)
+|+|.|+|.+.+.. +.. ......|.|.. ++.+...+....+.+|+.++|.|.+.+.|.+
T Consensus 111 ~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~ 190 (291)
T 2gki_A 111 EDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNS 190 (291)
T ss_dssp GGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEET
T ss_pred HHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccccc
Confidence 99999999999864 211 11234566655 2233333445678899999999999988775
Q ss_pred -----eEEEEECC--EE---ecC---------CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE-EE
Q psy16652 304 -----AIVWIKDG--VQ---IMN---------NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ-KE 363 (384)
Q Consensus 304 -----~v~W~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~ 363 (384)
.+.|++++ .. +.. ..++.... .....+|+|.+++.+|+|.|.|.|.|...-.- .-
T Consensus 191 ~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g 265 (291)
T 2gki_A 191 RTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSG 265 (291)
T ss_dssp TTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred cccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe-----cCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCC
Confidence 89999963 21 110 22333211 11345799999999999999999999643211 12
Q ss_pred EEEEEeeeec
Q psy16652 364 IELFDRETQT 373 (384)
Q Consensus 364 ~~l~v~~~~~ 373 (384)
..|.|+..+.
T Consensus 266 t~l~v~~~~~ 275 (291)
T 2gki_A 266 TKLEIKHHHH 275 (291)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEeeEc
Confidence 3556655543
No 349
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.77 E-value=1.9e-17 Score=135.76 Aligned_cols=172 Identities=13% Similarity=0.215 Sum_probs=114.8
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCccc--------------c---cCceeE-----eccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL--------------S---TGGSIY-----RGNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~--------------~---~~~~~~-----~~~~l~i~~~~~~d~ 247 (384)
+..+.+.+|+++.|.|.+.+ +.+.+.|++...... . ..+... ....|.|.+++.+|+
T Consensus 9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 87 (240)
T 3q5y_A 9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS 87 (240)
T ss_dssp CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence 45577899999999999876 677999998321100 0 011111 123799999999999
Q ss_pred eEEEEEEEeC--CCCceeeEEEEEEE------ecCeEEec-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEecC
Q psy16652 248 GTYYCVAQNG--VGRGMKRNIAVEVE------FAPVITIN-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQIMN 316 (384)
Q Consensus 248 G~Y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~ 316 (384)
|.|+|.+.+. ..........|.|. .+|.+.+. +....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..
T Consensus 88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~ 167 (240)
T 3q5y_A 88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 167 (240)
T ss_dssp EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence 9999999832 22222334456665 45666543 33345667899999999988 6666 7999999999865
Q ss_pred CCceee--eeeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceEE
Q psy16652 317 NQHYSV--SHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQK 362 (384)
Q Consensus 317 ~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 362 (384)
...... .....+.....+.|.|.....+| .|.|+|.|.|.......
T Consensus 168 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~~~ 216 (240)
T 3q5y_A 168 GVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEED 216 (240)
T ss_dssp TEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred cEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCcc
Confidence 433211 11111112223458899988888 77999999998765543
No 350
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.77 E-value=1.3e-18 Score=134.44 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=103.4
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEeecCCCCC
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKEIQETDA 156 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 156 (384)
+.+.+.+|++|+|.|.+.. +...+.|++++.. +.....+... ...+|+.+. ..+.+|.|.+++.+|+
T Consensus 3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~-----i~~~~~~~~~~~~~~~~R~~~~----~~~~sL~I~~v~~~Ds 72 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDK-----VAELENSEFRAFSSFKNRVYLD----TVSGSLTIYNLTSSDE 72 (171)
T ss_dssp EEEEEETTCCEEECCCCSS-CCSCEEEEETTEE-----EEEEETTEEEECGGGTTSEEEC----TTTCCEEECSCCGGGC
T ss_pred cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcE-----EEEEcCCCcccccccCCcEEEe----CCCCeEEECCCChhhC
Confidence 3456889999999999844 7789999997642 1111111100 123344442 2334799999999999
Q ss_pred eeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccE
Q psy16652 157 GIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI 236 (384)
Q Consensus 157 G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 236 (384)
|.|+|.+.+..+ ...+.|.|..++..+ ....... ...|.|.+.+.|.+.+.|++++..+... ....
T Consensus 73 G~Y~C~~~n~~~---~~~~~L~V~~~~~~p-----~i~~~~~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~ 138 (171)
T 1ccz_A 73 DEYEMESPNITD---TMKFFLYVLEMVSKP-----MIYWECS-NATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKT 138 (171)
T ss_dssp EEEEEECTTCCS---CEEEEEEEECCCCCC-----EEEEETT-TTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSE
T ss_pred ceEEEEEeCCCC---cEEEEEEEECcCCCC-----EEEEecC-CcEEEEEeCCCCCcEEEEEECCEECcCC-----cceE
Confidence 999999964433 667788887653221 1111111 2379999988888999999988765432 1223
Q ss_pred EEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 237 LKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 237 l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
|.+. ..+|+|.|+|.|.|..+..
T Consensus 139 l~~~--~~~~~g~Y~C~a~N~~~~~ 161 (171)
T 1ccz_A 139 MSYQ--WTNLRAPFKCKAVNRVSQE 161 (171)
T ss_dssp EEEE--CSCCSSCEEEEEEETTEEE
T ss_pred EEEe--ccCCCceEEEEEEcccCcc
Confidence 4443 3678899999999987764
No 351
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.77 E-value=2.1e-17 Score=136.05 Aligned_cols=171 Identities=17% Similarity=0.204 Sum_probs=113.9
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCC--C------------ccccc----CceeEe-----ccEEEEcCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--S------------AALST----GGSIYR-----GNILKIPNITKTD 246 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~------------~~~~~----~~~~~~-----~~~l~i~~~~~~d 246 (384)
+..+.+.+|+++.|.| ..+.+.+.+.|++.. . ..... .+.... ...|.|.+++.+|
T Consensus 9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 87 (245)
T 4ei6_B 9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED 87 (245)
T ss_dssp CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence 4557789999999999 666677899999821 1 00000 111111 2389999999999
Q ss_pred CeEEEEEEEeCC---CCceeeEEEEEEE------ecCeEEec-CCCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652 247 RGTYYCVAQNGV---GRGMKRNIAVEVE------FAPVITIN-RPRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI 314 (384)
Q Consensus 247 ~G~Y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~ 314 (384)
+|.|+|.+.+.. .........|.|. .+|.+.+. +....+..|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus 88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l 167 (245)
T 4ei6_B 88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167 (245)
T ss_dssp CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence 999999999632 1122344566666 35655543 33345667999999999988 4545 89999999998
Q ss_pred cCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652 315 MNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361 (384)
Q Consensus 315 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 361 (384)
........... ..+.....+.|.|.....+| .|.|+|.|.|......
T Consensus 168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 75433221110 01111123458888888888 9999999999876554
No 352
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.77 E-value=6.2e-18 Score=141.88 Aligned_cols=179 Identities=17% Similarity=0.261 Sum_probs=113.1
Q ss_pred CceEEeecCceEEEEEEeccc--CCCeEEEEeCCCccccc-------------------CceeEe------ccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALST-------------------GGSIYR------GNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~-------------------~~~~~~------~~~l~i~~~ 242 (384)
+....+.+|++++|.|.+.+. +.+.+.|++........ .+.... ...|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 345678899999999999764 45789999743211000 011111 137999999
Q ss_pred CCCCCeEEEEEEEeC--------CCCceeeEEEEEEEe---------------cCeEEecCCCcccccCCcEEEEEEEec
Q psy16652 243 TKTDRGTYYCVAQNG--------VGRGMKRNIAVEVEF---------------APVITINRPRQGQALQYDAILECHVEA 299 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~ 299 (384)
+.+|+|.|+|.+.+. ..........|.|.. ++.+...+. ..+.+|+.++|.|.+.+
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~ 165 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS 165 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence 999999999999986 111122334556655 333433333 67889999999999988
Q ss_pred -cC-CCeEEEEEC--CEEec------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc---e
Q psy16652 300 -YP-PPAIVWIKD--GVQIM------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS---A 360 (384)
Q Consensus 300 -~p-~~~v~W~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~---~ 360 (384)
.+ .+.+.|++. +..+. ...++.... ......|+|.+++.+|+|.|.|.+.|..+. .
T Consensus 166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~ 240 (280)
T 3fku_X 166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASR-----SGNTASLTITGLQPEDEADYYCSTWDSSLSAVVF 240 (280)
T ss_dssp CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEc-----cCCEEEEEECCCCHHHCEEEEEEEecCCCCceEE
Confidence 44 368999983 22211 012333221 113456999999999999999999998732 1
Q ss_pred EEEEEEEEeeeecC
Q psy16652 361 QKEIELFDRETQTG 374 (384)
Q Consensus 361 ~~~~~l~v~~~~~~ 374 (384)
.....|.|...+..
T Consensus 241 g~~t~l~V~~~~~~ 254 (280)
T 3fku_X 241 GGGTKLTVLGQPKA 254 (280)
T ss_dssp BCCCEEEEC-----
T ss_pred CCCEEEEECCCCCC
Confidence 22346677665443
No 353
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.76 E-value=1e-17 Score=138.66 Aligned_cols=175 Identities=18% Similarity=0.280 Sum_probs=115.0
Q ss_pred CceEEeecCceEEEEEEecccC--CCeEEEEeCC--Ccccc-----------------cCceeEe------ccEEEEcCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAALS-----------------TGGSIYR------GNILKIPNI 242 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~~-----------------~~~~~~~------~~~l~i~~~ 242 (384)
+....+.+|++++|.|.+.+.+ .+.+.|++.. ..+.. ..+.... ...|.|.++
T Consensus 13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 92 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL 92 (261)
T ss_dssp CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence 3456789999999999998765 5789999864 21110 1111111 247999999
Q ss_pred CCCCCeEEEEEEEeCCCCc--eeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEe
Q psy16652 243 TKTDRGTYYCVAQNGVGRG--MKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQI 314 (384)
Q Consensus 243 ~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~ 314 (384)
+.+|+|.|.|.+.+..+.. ......|.|.. +|.+...++...+..|+.++|.|.+.+. |.+ .|.|++++..+
T Consensus 93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~ 172 (261)
T 2xqy_G 93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS 172 (261)
T ss_dssp CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence 9999999999999854211 12334666664 4665544444456779999999999884 776 99999998764
Q ss_pred cCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy16652 315 MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367 (384)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 367 (384)
......... ..+.....+.|.|.....+| |.|+|.|.|..........+.
T Consensus 173 ~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~~ 222 (261)
T 2xqy_G 173 GVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIE 222 (261)
T ss_dssp TEEECCCEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred ceEecCcee--cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEec
Confidence 211100010 11111234678998888888 999999999877655554443
No 354
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.76 E-value=1.6e-17 Score=138.72 Aligned_cols=172 Identities=15% Similarity=0.205 Sum_probs=114.7
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCC--Cccc------------cc----CceeE-----eccEEEEcCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDN--SAAL------------ST----GGSIY-----RGNILKIPNITKTD 246 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~~------------~~----~~~~~-----~~~~l~i~~~~~~d 246 (384)
+..+.+.+|++++|.|.+. .+.+.+.|++.. .... .. .+... ....|.|.+++.+|
T Consensus 33 p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D 111 (268)
T 3pl6_D 33 PSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGD 111 (268)
T ss_dssp CSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGG
T ss_pred CCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCccc
Confidence 5567789999999999986 466799999832 1110 00 11111 13479999999999
Q ss_pred CeEEEEEEEeCC-CCceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEeccCCC--eEEEEECCEEecC
Q psy16652 247 RGTYYCVAQNGV-GRGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN 316 (384)
Q Consensus 247 ~G~Y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~ 316 (384)
+|.|+|.+.+.. .........|.|.. +|.+.+. +....+..|+.++|.|.+.|.+++ .+.|+++|..+..
T Consensus 112 ~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~ 191 (268)
T 3pl6_D 112 SAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 191 (268)
T ss_dssp CEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEECT
T ss_pred CEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECCC
Confidence 999999999742 22223345566664 5665543 333456679999999999985554 8999999998865
Q ss_pred CCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcceEE
Q psy16652 317 NQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQK 362 (384)
Q Consensus 317 ~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~ 362 (384)
......... ..+.....+.|.|.....+| .|.|+|.|.|.......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~~~ 244 (268)
T 3pl6_D 192 GVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEND 244 (268)
T ss_dssp TEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred CeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCCCc
Confidence 432211000 11111223557788887777 99999999998766543
No 355
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.76 E-value=2e-17 Score=138.02 Aligned_cols=164 Identities=15% Similarity=0.191 Sum_probs=106.6
Q ss_pred CceEEeecCceEEEEEEecccC-----CCeEEEEeCCCc--cc------------ccCceeE----eccEEEEcCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP-----APTISWRRDNSA--AL------------STGGSIY----RGNILKIPNITKTD 246 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~d 246 (384)
+..+.+.+|++++|.|.+.+.+ .+.+.|++.... .. ...+... ....|.|.+++.+|
T Consensus 22 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 101 (268)
T 1x9q_A 22 PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAED 101 (268)
T ss_dssp CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhH
Confidence 4456688999999999998766 478999986421 10 0111111 12379999999999
Q ss_pred CeEEEEEEEeCCCCceeeEEEEEEEecCe-----------------------EEecCCCcccccCCcEEEEEEEeccCC-
Q psy16652 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPV-----------------------ITINRPRQGQALQYDAILECHVEAYPP- 302 (384)
Q Consensus 247 ~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C~~~~~p~- 302 (384)
+|.|+|.+.+..+........|.|...+. ....+....+.+|+.++|.|.+.+.++
T Consensus 102 sG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 181 (268)
T 1x9q_A 102 LGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTFG 181 (268)
T ss_dssp CEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCGG
T ss_pred CEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCcccc
Confidence 99999999986443222334555554321 112234557889999999999998764
Q ss_pred -CeEEEEEC--CEEec-------------------CCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 303 -PAIVWIKD--GVQIM-------------------NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 303 -~~v~W~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
+.+.|+++ +..+. ...++.+.... ......|+|.+++.+|+|.|.|.|.|.
T Consensus 182 ~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 182 HYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDD---SKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp GCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEG---GGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeC---CCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 78999985 22210 12233332110 112457999999999999999999985
No 356
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.76 E-value=6.5e-18 Score=138.31 Aligned_cols=180 Identities=19% Similarity=0.290 Sum_probs=115.6
Q ss_pred CcceeeeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceec------cCcee----eeCCceEEeeCCCCceE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISM------SGSLI----IHDSRFQLTTDPETSTY 144 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~ 144 (384)
+....+.+|++|+|.|.+.+.+ ...+.|++.........+.... .+... ...+|+.+..+......
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 5566789999999999998654 4489999976543222221111 11110 12468888765556778
Q ss_pred EEEEeecCCCCCeeEEEEEEEccC------------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEec
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLN------------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYAN 208 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~------------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~ 208 (384)
+|.|.+++.+|+|.|.|.+.+..+ ........|.|.. +|.+... .....+..|+.+.|.|.+.
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~l~C~~~ 165 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVK 165 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEE-CCCCCC--TTEEEEEEEEE
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEE-CCChhhccCCcEEEEEEEe
Confidence 999999999999999999975421 1123334566642 2222211 1222345699999999997
Q ss_pred c-cCCC-eEEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 209 G-FPAP-TISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 209 ~-~~~~-~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+ +|.+ .+.|++++..+. ..++.....+.|.|.....+| |.|+|.|.|..+.
T Consensus 166 ~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 226 (239)
T 3tv3_H 166 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 226 (239)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred eEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCC
Confidence 7 5544 589999876331 112222334578898888888 9999999997654
No 357
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.76 E-value=8e-18 Score=137.26 Aligned_cols=180 Identities=18% Similarity=0.294 Sum_probs=112.9
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccE--EEEEeCCCCCCcccceec-cCc------eeeeCCceEEeeCCCCceEEEE
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPV--IWMKMDTAKKMEPLPISM-SGS------LIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v--~W~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
+....+.+|++|+|.|.+.+. ....+ .|++.........+.... .+. .....+|+.+..+...+..+|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 86 (232)
T 3qhz_H 7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT 86 (232)
T ss_dssp ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence 445678999999999999753 22445 999976543222221111 111 1123468888876667788999
Q ss_pred EeecCCCCCeeEEEEEEEccC-------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecccCC--Ce
Q psy16652 148 IKEIQETDAGIYKCEVIISLN-------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANGFPA--PT 214 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~ 214 (384)
|.+++.+|+|.|.|.+.+..+ ........|.|.. +|.+... .....+..|+.+.|.|.+.+.++ ..
T Consensus 87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~~~~P~~~~ 165 (232)
T 3qhz_H 87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVT 165 (232)
T ss_dssp ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEE-CC-------CEEEEEEEEEEEBSSCCE
T ss_pred ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEe-cccccccCCCcEEEEEEEeeEeCCCeE
Confidence 999999999999999975421 1233445666652 2333211 22223567999999999977433 36
Q ss_pred EEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 215 ISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 215 v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.|++++..+. ...+.....+.|.|......| |.|+|.|.|..+.
T Consensus 166 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~ 218 (232)
T 3qhz_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 218 (232)
T ss_dssp EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCC
Confidence 88999875321 112222334578899888888 9999999997654
No 358
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.76 E-value=6.5e-18 Score=139.58 Aligned_cols=185 Identities=16% Similarity=0.259 Sum_probs=116.2
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCcee---eeCCceEEeeCCCCceEEEEEee
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI---IHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+...+..+.+.+|++|+|.|.+. .+...+.|++.........+......... ...+|+.+..+ ......|.|.+
T Consensus 5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~L~I~~ 82 (252)
T 1oga_E 5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE-KKESFPLTVTS 82 (252)
T ss_dssp CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCS-STTBCCEEECS
T ss_pred cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEec-CCCEEEEEECc
Confidence 455667778899999999999985 35678999997643221212221111111 12467777653 24567899999
Q ss_pred cCCCCCeeEEEEEEEcc--CcceeeeEEEEEec------CCccccCCCceEEeecCceEEEEEEeccc-CCC-eEEEEeC
Q psy16652 151 IQETDAGIYKCEVIISL--NNKVSAEVELIVRR------PPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRD 220 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~~------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~W~~~ 220 (384)
++.+|+|.|+|.+.+.. .........|.|.. +|.+....+....+.+|+.+.|.|.+.+. |.+ .+.|+++
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 162 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 162 (252)
T ss_dssp CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence 99999999999997541 11222334566653 22222111221223468999999999874 654 9999998
Q ss_pred CCcccccCc---------------eeEeccEEEEcCCCCC-CCeEEEEEEEeCCCC
Q psy16652 221 NSAALSTGG---------------SIYRGNILKIPNITKT-DRGTYYCVAQNGVGR 260 (384)
Q Consensus 221 ~~~~~~~~~---------------~~~~~~~l~i~~~~~~-d~G~Y~C~~~~~~~~ 260 (384)
+..+..... .......|.|...... +.|.|+|.+.|....
T Consensus 163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 876543211 1112235777766553 678999999996543
No 359
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.76 E-value=6.3e-19 Score=142.24 Aligned_cols=180 Identities=14% Similarity=0.183 Sum_probs=108.9
Q ss_pred ccCCCCeeeeCccee--eeccCcEEEEEEeecC---C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCc
Q psy16652 69 SQRTPTISYISQEQI--KDIAQTADLKCSVQYA---D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (384)
...+|.+.+.+.... +.+|++++|.|.+.+. + .+.+.|+|++........ .......+++|..
T Consensus 6 ~~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~----~~~~~~~~~~~~~------- 74 (218)
T 2rgs_A 6 LEGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT----QTHREDYNSTIRV------- 74 (218)
T ss_dssp ---CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEE----EEEEETTTTEEEE-------
T ss_pred CCCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccc----ccccccCCCeEEE-------
Confidence 345667766666655 7899999999999875 3 378999998753211000 0000011223322
Q ss_pred eEEEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEE
Q psy16652 143 TYILSIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISW 217 (384)
Q Consensus 143 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W 217 (384)
...|.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ..+|+.+.|.|.+.| +|.+ .+.|
T Consensus 75 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W 153 (218)
T 2rgs_A 75 VSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEW 153 (218)
T ss_dssp EEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred EEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEE
Confidence 2479999999999999999998764432 1222211 2334444332211111 125899999999988 6665 9999
Q ss_pred EeCCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++++..+..... .......|.|.....+|+|.|+|.|.|....
T Consensus 154 ~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 154 TSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred EECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 999876532111 1111224555555555789999999996544
No 360
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.76 E-value=1.7e-17 Score=133.64 Aligned_cols=170 Identities=21% Similarity=0.336 Sum_probs=109.0
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCC--Cccc----------------ccCceeEe------ccEEEEcCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDN--SAAL----------------STGGSIYR------GNILKIPNITKT 245 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~ 245 (384)
...+.+|+++.|.|.+.+.+ .+.+.|++.. .... ...+.... ...|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence 35688999999999998754 4689999863 2110 01111111 238999999999
Q ss_pred CCeEEEEEEEeCCCC--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecCC
Q psy16652 246 DRGTYYCVAQNGVGR--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMNN 317 (384)
Q Consensus 246 d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~ 317 (384)
|+|.|.|.+.+..+. .......|.|.. +|.+...++...+..|+.++|.|.+.|. |.+ .+.|+++|..+...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~ 168 (215)
T 1c5d_H 89 DTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH 168 (215)
T ss_dssp GCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred cCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence 999999999986421 112335666663 4555554444456789999999999986 877 99999998654211
Q ss_pred CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 318 QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
.. .... ..+.....+.|+ ....+| |.|+|.|.|..|.......+
T Consensus 169 ~~-~~~~-~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~~ 212 (215)
T 1c5d_H 169 TF-PAVL-QSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKKL 212 (215)
T ss_dssp BC-CCEE-ETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ec-Cccc-CCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEec
Confidence 11 0000 011111112333 444456 99999999999987655443
No 361
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.76 E-value=1.9e-17 Score=137.05 Aligned_cols=178 Identities=19% Similarity=0.310 Sum_probs=112.3
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+. ....+.|++.........+..... ... ....+|+.+..+...+..+|.|.++
T Consensus 30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 109 (256)
T 3sob_H 30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL 109 (256)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence 356679999999999999753 356899999765432222221111 111 1134688887765667889999999
Q ss_pred CCCCCeeEEEEEEEcc----------CcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cC-CCeE
Q psy16652 152 QETDAGIYKCEVIISL----------NNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTI 215 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~----------~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v 215 (384)
+.+|+|.|+|.+.+.. .........|.|.. +|.+... .+...+.+|+.+.|.|.+.+ +| ...+
T Consensus 110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~~~~p~~~~v 188 (256)
T 3sob_H 110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTV 188 (256)
T ss_dssp CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEE-CCC-----TTEEEEEEEEEEEBSSCCEE
T ss_pred CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEE-CCCcccccCCcEEEEEEEEEEECCCeEE
Confidence 9999999999997432 01233445676653 2222211 12223568999999999976 45 3479
Q ss_pred EEEeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 216 SWRRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 216 ~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.| ++..+.. .++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus 189 ~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~ 240 (256)
T 3sob_H 189 SW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 240 (256)
T ss_dssp EE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred EE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCC
Confidence 99 4433321 11222233578999998889 9999999997654
No 362
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.75 E-value=7.5e-18 Score=117.29 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=78.8
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
||.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+.......+..... ....+|.|.+++.+|+|.|+|.
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~ 81 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENT---DDLTTLIIMDVQKQDGGLYTLS 81 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEEC---SSEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecc---cceEEEEEcCCCccCCEEEEEE
Confidence 5677666677788999999999999999999999999999997665433322111 1346799999999999999999
Q ss_pred EEeCCcceEEEEEEEEee
Q psy16652 353 AANKYGSAQKEIELFDRE 370 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~ 370 (384)
|.|..|..+.++.|.|++
T Consensus 82 a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 82 LGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCEEEEEEEEEEEE
Confidence 999999999999999875
No 363
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.75 E-value=2.7e-17 Score=133.89 Aligned_cols=178 Identities=20% Similarity=0.337 Sum_probs=115.8
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceeccCc-----eeeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGS-----LIIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+. ....+.|++.........+....... .....+|+.+..+.....+.|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (230)
T 3n9g_H 7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL 86 (230)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence 445678999999999999752 35689999976443222222111111 11235788888776678889999999
Q ss_pred CCCCCeeEEEEEEEccC-------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cC-CCeEEEE
Q psy16652 152 QETDAGIYKCEVIISLN-------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISWR 218 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W~ 218 (384)
+.+|+|.|.|.+.+... ........|.|.. +|.+... .....+.+|+.+.|.|.+.+ .| .+.+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~-~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEE-CCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEec-CCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 99999999999975321 1223445677652 2222211 11222458999999999977 44 347999
Q ss_pred eCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 219 RDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 219 ~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++..+.. .++.....+.|.|.....+| |.|+|.|.|..+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 214 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGT
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCC
Confidence 4443321 11222233579999999999 9999999997654
No 364
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.75 E-value=1.5e-17 Score=136.63 Aligned_cols=181 Identities=17% Similarity=0.254 Sum_probs=115.0
Q ss_pred eCcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceec-cCce----eeeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISM-SGSL----IIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+....+.+|++|+|.|.+.+. +...+.|++.........+.... .+.. ....+|+.+..+......+|.|.+
T Consensus 5 ~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (248)
T 3u2s_H 5 ESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNS 84 (248)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred cCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 4566778999999999999752 35689999976543222221111 1111 113478888776556788999999
Q ss_pred cCCCCCeeEEEEEEEcc---------------------CcceeeeEEEEEec----CCccccCCCceEEeecCceEEEEE
Q psy16652 151 IQETDAGIYKCEVIISL---------------------NNKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYC 205 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~---------------------~~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C 205 (384)
++.+|+|.|.|.+.+.. .........|.|.. +|.+... .+...+..|+.+.|.|
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~-~~~~~~~~g~~~~L~C 163 (248)
T 3u2s_H 85 LRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPL-APSSKSTSGGTAALGC 163 (248)
T ss_dssp CCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEE-CCC------CEEEEEE
T ss_pred CCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEe-CCCccccCCCcEEEEE
Confidence 99999999999997531 11233345666652 2222211 1222345699999999
Q ss_pred Eecc-cC-CCeEEEEeCCCccc--------ccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 206 YANG-FP-APTISWRRDNSAAL--------STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 206 ~~~~-~~-~~~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.+.+ +| ...+.|++++.... ..++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus 164 ~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 227 (248)
T 3u2s_H 164 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 227 (248)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGT
T ss_pred EEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCC
Confidence 9977 45 34799999875321 112223334578888888888 9999999997654
No 365
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.75 E-value=7.3e-18 Score=139.02 Aligned_cols=173 Identities=18% Similarity=0.303 Sum_probs=99.0
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCCc--cc-----------------ccCceeEe------ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSA--AL-----------------STGGSIYR------GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~--~~-----------------~~~~~~~~------~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+.+ .+.+.|++.... +. ...+.... ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (257)
T 3bn9_D 9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA 88 (257)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence 45688999999999998765 568999986421 10 01111111 23799999999
Q ss_pred CCCeEEEEEEEeCCC----------C--ceeeEEEEEEEe----cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEE
Q psy16652 245 TDRGTYYCVAQNGVG----------R--GMKRNIAVEVEF----APVITINRPRQGQALQYDAILECHVEAY-PPP-AIV 306 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~ 306 (384)
+|+|.|.|.+.+..+ . .......|.|.. +|.+....+...+..|+.++|.|.+.+. |.+ .|.
T Consensus 89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~ 168 (257)
T 3bn9_D 89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS 168 (257)
T ss_dssp GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEE
T ss_pred hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence 999999999998654 1 111234667764 4665544433345678999999999985 777 999
Q ss_pred EEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 307 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
|++++..+... .........+.....+.|.|.....+| |.|+|.|.|..........+
T Consensus 169 W~k~g~~~~~~-~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~~i 226 (257)
T 3bn9_D 169 WNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 226 (257)
T ss_dssp ETTTTCCSSCE-ECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEEEE
T ss_pred EeeCCCcCCcE-ecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEEEE
Confidence 99998764211 000000111111223567788777778 99999999987655444433
No 366
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.74 E-value=2.8e-17 Score=152.76 Aligned_cols=171 Identities=19% Similarity=0.300 Sum_probs=121.2
Q ss_pred CceEEeecCceEEEEEEe-cccCCCeEEEEeCCCccc-------------ccCceeEeccEEEEcCCCCCCCeEEEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAAL-------------STGGSIYRGNILKIPNITKTDRGTYYCVAQ 255 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~-------------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 255 (384)
.....+.+|++++|.|.+ .+.|.+.+.|++++..+. ........+.+|.|.+++.+|+|.|+|.+.
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence 445678999999999998 778888999999876321 111122334589999999999999999999
Q ss_pred eCCCCceeeEEEEEEEecCeE-EecCCCcccccCCc-EEEEEEEec-cCCCeEEEEECCEEecCCC-ceeeeee-----e
Q psy16652 256 NGVGRGMKRNIAVEVEFAPVI-TINRPRQGQALQYD-AILECHVEA-YPPPAIVWIKDGVQIMNNQ-HYSVSHF-----A 326 (384)
Q Consensus 256 ~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~v~W~~~~~~~~~~~-~~~~~~~-----~ 326 (384)
+..+......+.|.|..+|.. .+......+..++. +.|.|.+.+ +|.|.+.|+++|..+.... +..+... .
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~ 532 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE 532 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence 988776567788888774432 22223333455544 466999988 6999999999999987543 3222211 1
Q ss_pred ccCccccceEEEeecCCC-CCeEEEEEEEeCCcce
Q psy16652 327 TSDEFSDTSLRVITIERR-QFGQYACKAANKYGSA 360 (384)
Q Consensus 327 ~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~ 360 (384)
.+.+...++|.|..++.+ +.|.|+|.|+|..+..
T Consensus 533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred CceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 122233467999998845 4889999999997543
No 367
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.74 E-value=3.7e-18 Score=136.62 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=102.1
Q ss_pred eeccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 84 KDIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
+.+|++++|.|.+.+.+ ...+.|++++....... . .......+++|.. ...|.|.+++.+|+|.|
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~-~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y 83 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ---T-KPREEQFNSTFRS-------VSELPIMHQDWLNGKEF 83 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCE---E-ECCCEETTTEEEE-------EEEEECCHHHHHTTCCE
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccc---c-CCCcCcCCCcEEE-------EEEEEEehhHcCCCCEE
Confidence 78999999999998763 34899999874321100 0 0000111223322 24799999999999999
Q ss_pred EEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCCCcccccCc-----
Q psy16652 160 KCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDNSAALSTGG----- 229 (384)
Q Consensus 160 ~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~----- 229 (384)
+|.+.+..+.. ....+.+ .+..+|.+........ ...|+.+.|.|.+.| +|. +.+.|++++..+.....
T Consensus 84 ~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 162 (207)
T 2vol_A 84 KCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM 162 (207)
T ss_dssp EEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE
T ss_pred EEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE
Confidence 99998655432 2223332 2334454432211111 225899999999988 455 38999999876542211
Q ss_pred ----eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 230 ----SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 230 ----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
.......|.|.....+|.|.|+|.|.|....
T Consensus 163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 1111224666666667899999999997543
No 368
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.74 E-value=1.2e-16 Score=125.57 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=109.1
Q ss_pred eeeeccCcEEEEEEeecCCCc--cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 82 QIKDIAQTADLKCSVQYADDY--PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 82 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
+.|..|++++|.|.+ +.+.+ .|.|.+.+... ++... ......|.|.+++.+|+|.|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-----------------~~~~~----~~~~~~L~I~~v~~~d~G~Y 74 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-----------------GAVQS----DTGRSVLTVRNASLSAAGTR 74 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-----------------CCEEE----ESSEEEEEECSCCGGGCEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-----------------CcEEe----cCCccEEEECccCcccCceE
Confidence 479999999999999 76656 99999954321 11111 13345799999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCC----CeEEEEeCCCcccccCc---e-
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA----PTISWRRDNSAALSTGG---S- 230 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~----~~v~W~~~~~~~~~~~~---~- 230 (384)
.|.+.+.. +.....+.|.|+.+|......+. ...+|+.. |.|.+.+ .|. +++.|++++..+..... .
T Consensus 75 ~C~a~n~~-~~~~~~~~ltV~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~ 150 (210)
T 1gsm_A 75 VCVGSCGG-RTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEV 150 (210)
T ss_dssp EEEEEETT-EEEEEEEEEEEEBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEE
T ss_pred EEEEEeCC-CceEEEEEEEEEecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccce
Confidence 99998644 55778899999998865543222 45678888 9999977 463 48999999987743311 0
Q ss_pred --------------eEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 231 --------------IYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 231 --------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
..-.++|.+.....++.+.|+|.|.+..-.
T Consensus 151 ~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 151 QEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPG 194 (210)
T ss_dssp EECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred ecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence 111234555567777778999999986543
No 369
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.74 E-value=5.2e-17 Score=136.27 Aligned_cols=172 Identities=17% Similarity=0.246 Sum_probs=113.3
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc-----------------ccCceeEe-----ccEEEEcCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL-----------------STGGSIYR-----GNILKIPNITKT 245 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~-----------------~~~~~~~~-----~~~l~i~~~~~~ 245 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++.+.. .. ...+.... ...|.|.+++.+
T Consensus 31 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 110 (279)
T 2wbj_D 31 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE 110 (279)
T ss_dssp CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGG
T ss_pred CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCcc
Confidence 4557789999999999998777789999986421 10 01111111 237999999999
Q ss_pred CCeEEEEEEEeCCC----C-ceeeEEEEEEEe------cCeEEecC-CCcccccCCcEEEEEEEecc-CC-CeEEEEECC
Q psy16652 246 DRGTYYCVAQNGVG----R-GMKRNIAVEVEF------APVITINR-PRQGQALQYDAILECHVEAY-PP-PAIVWIKDG 311 (384)
Q Consensus 246 d~G~Y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~ 311 (384)
|+|.|+|.+.+..+ . .......|.|.. +|.+.+.. ....+..|+.++|.|.+.|. |+ +.+.|+++|
T Consensus 111 D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g 190 (279)
T 2wbj_D 111 DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 190 (279)
T ss_dssp GCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEETT
T ss_pred CCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 99999999998421 0 112234566653 56665433 33345578999999999986 43 599999999
Q ss_pred EEecCCCceeeee------eeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652 312 VQIMNNQHYSVSH------FATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361 (384)
Q Consensus 312 ~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 361 (384)
..+.......... ...+.....+.|.|.....+| .|.|+|.|.|......
T Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 191 KEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp EECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred EECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 9886543211000 011111123457777777654 6789999999877655
No 370
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.74 E-value=1.3e-16 Score=127.31 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=113.4
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeC-CCCceEEEEEeecCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYILSIKEIQE 153 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~ 153 (384)
+...+..+.+.+|++|+|.|.+.+.. ..+.|+|.........+... .......+|+.+..+ ...+...|.|.+++.
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~--~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYL--ASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEE--SSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEE--ccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 45556777899999999999987654 37999997643211222111 122335678888775 446778999999999
Q ss_pred CCCeeEEEEEEEccC--------c--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCC
Q psy16652 154 TDAGIYKCEVIISLN--------N--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDN 221 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~--------~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~ 221 (384)
+|+|.|.|.+.+..+ . .......|.|....... .++.+.+..+ .+.|.|.+.+. |. +.+.|+++
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~--~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~- 156 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP--AKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS- 156 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCC--CCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCC--CCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-
Confidence 999999999985431 1 12234677776432111 1223333232 37999999774 54 69999998
Q ss_pred CcccccCcee--EeccEEEEcCCCC-CCCeEEEEEEEeCCC
Q psy16652 222 SAALSTGGSI--YRGNILKIPNITK-TDRGTYYCVAQNGVG 259 (384)
Q Consensus 222 ~~~~~~~~~~--~~~~~l~i~~~~~-~d~G~Y~C~~~~~~~ 259 (384)
..+....... ..++.+.+..... +|.|.|+|.+.|..+
T Consensus 157 ~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~ 197 (207)
T 1ypz_E 157 KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSE 197 (207)
T ss_dssp SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTE
T ss_pred CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCc
Confidence 6554322211 1233444444433 678999999998654
No 371
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.74 E-value=2.2e-17 Score=118.42 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=90.8
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|
T Consensus 6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C 80 (114)
T 2cqv_A 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS-----ENGSKLTILAARQEHCGCYTL 80 (114)
T ss_dssp CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEEC-----SSEEEEEETTCCTTTCEEEEE
T ss_pred CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEECCCChhcCEEEEE
Confidence 356776667777889999999999999999999999999999887776655421 135689999999999999999
Q ss_pred EEEeCCcceEEEEEEEEeeeecCCccCCcccc
Q psy16652 352 KAANKYGSAQKEIELFDRETQTGDETFPIFYA 383 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~ 383 (384)
.|.|..|.....+.|.|.++|.+|..+|.+..
T Consensus 81 ~a~N~~g~~~~~~~l~V~~~p~~P~~p~~~~~ 112 (114)
T 2cqv_A 81 LVENKLGSRQAQVNLTVVDKPDPPAGTPSGPS 112 (114)
T ss_dssp EEECSSCEEECCEEEEEECSCSCCCCCTTSSC
T ss_pred EEEECCCcEEEEEEEEEECCCCCCCCCccccc
Confidence 99999999999999999999888887776543
No 372
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.73 E-value=2.1e-15 Score=119.40 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=156.8
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecC-C---CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYA-D---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
+.+...|+...+..|+.++|.|.+.+. | +..+.|+|++... ......|.|
T Consensus 3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~I--------------------------sGaT~tLti 56 (304)
T 3shs_A 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH--------------------------ENNTATLTV 56 (304)
T ss_dssp EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEEC--------------------------SCCSSEEEE
T ss_pred cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccc--------------------------cCCcceEEe
Confidence 356667777788999999999998764 4 4689999976431 112236899
Q ss_pred eecCCCCCeeEEEEEEEccCcce-eeeEEEEEecCCccccCCCceEEeecCceEEEEEEe--cc-cC-----CCeEEEEe
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKV-SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA--NG-FP-----APTISWRR 219 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~-~~-----~~~v~W~~ 219 (384)
..+...|+|.|+|.+.+..+... +..+.+.....+.+....+....+..|..+.|.+.+ .| .+ ..++.|++
T Consensus 57 ~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyK 136 (304)
T 3shs_A 57 ADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK 136 (304)
T ss_dssp SSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEE
T ss_pred eeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEee
Confidence 99999999999999986554332 233333332222333333455556678899998887 44 33 45899999
Q ss_pred CCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC-CceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEe
Q psy16652 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE 298 (384)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~ 298 (384)
++..+. ....|++......++|.|.|.+.+..+ ...+..+.+.+...+.-...-....+..|+.+.|.-.+.
T Consensus 137 ngt~Is-------gAq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 209 (304)
T 3shs_A 137 GEDVID-------TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209 (304)
T ss_dssp TTEEEE-------SSSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEE
T ss_pred CCeEcc-------CccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEe
Confidence 986442 233577888888999999999998755 444666666554433322222334567888888875542
Q ss_pred --------ccCCC--eEEEEE--CCEEe----cCC-----CceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCC
Q psy16652 299 --------AYPPP--AIVWIK--DGVQI----MNN-----QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357 (384)
Q Consensus 299 --------~~p~~--~v~W~~--~~~~~----~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 357 (384)
|.|.. .+.||. +|+.- ... +.+.+. .++.|.-.....+|...|.|.|.-..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 3shs_A 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT--------PDGHLFKESATYDDTAKFWCVAKLYQ 281 (304)
T ss_dssp EECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEEC--------TTSCEEESSCCGGGCEEEEEEEEEEE
T ss_pred eccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeC--------CCcceeecccccccchheeeHHHHHH
Confidence 23333 477875 33211 110 111111 24557667788899999999987543
No 373
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.73 E-value=1.3e-16 Score=130.58 Aligned_cols=171 Identities=16% Similarity=0.262 Sum_probs=109.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc---------------ccCceeE-----eccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL---------------STGGSIY-----RGNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~---------------~~~~~~~-----~~~~l~i~~~~~~d~ 247 (384)
+..+.+.+|+++.|.|.+.. +.+.+.|++.+.. .. ...+... ....|.|.+++.+|+
T Consensus 6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~ 84 (238)
T 1bec_A 6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT 84 (238)
T ss_dssp CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence 45677899999999999854 5679999986421 10 0111111 124799999999999
Q ss_pred eEEEEEEEeCCC----CceeeEEEEEEEe------cCeEEec-CCCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEe
Q psy16652 248 GTYYCVAQNGVG----RGMKRNIAVEVEF------APVITIN-RPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQI 314 (384)
Q Consensus 248 G~Y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~ 314 (384)
|.|.|.+.+..+ ........|.|.. +|.+.+. +....+..|+.++|.|.+.|. |.+ .+.|+++|..+
T Consensus 85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~ 164 (238)
T 1bec_A 85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV 164 (238)
T ss_dssp EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence 999999998642 1112234566654 5666553 334456689999999999985 655 99999999988
Q ss_pred cCCCcee--eeeeeccCccccceEEEeecCCCC-CeEEEEEEEeCCcceE
Q psy16652 315 MNNQHYS--VSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361 (384)
Q Consensus 315 ~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 361 (384)
....... ......+.....+.|.|......| .|.|+|.|.|......
T Consensus 165 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 214 (238)
T 1bec_A 165 HSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEE 214 (238)
T ss_dssp CTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCTT
T ss_pred CCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCCC
Confidence 6543221 011111111112334454444444 6789999999865433
No 374
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.73 E-value=4.6e-17 Score=134.96 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=110.9
Q ss_pred CcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 79 SQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+..+.+.+|++|+|.|.+.+.. ...+.|++.........+........ ....+|+.+..+......+|.|.+++
T Consensus 7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (263)
T 3iu4_H 7 SGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQ 86 (263)
T ss_dssp ECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCC
Confidence 3456789999999999997532 56899999765432222222221111 12357888877656678899999999
Q ss_pred CCCCeeEEEEEEEccC-------cceeeeEEEEEec----CCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEe
Q psy16652 153 ETDAGIYKCEVIISLN-------NKVSAEVELIVRR----PPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRR 219 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~ 219 (384)
.+|+|.|+|.+.+... ........|.|.. +|.+....+ ...+.+|+.+.|.|.+.+ +|. +.+.|
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~~~L~C~~~~~~P~~~~v~W-- 163 (263)
T 3iu4_H 87 TDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAP-SSKGSTSGTAALGCLVKDYFPEPVTVSW-- 163 (263)
T ss_dssp GGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECC-CCCC----EEEEEEEEEEEBSSCCEEEE--
T ss_pred HHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccC-ccccccCCcEEEEEEEEeEeCCceEEEE--
Confidence 9999999999975421 1222345666642 222221111 122457899999999977 443 58999
Q ss_pred CCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 220 DNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 220 ~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++..+.. .++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 213 (263)
T 3iu4_H 164 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 213 (263)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGT
T ss_pred CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCC
Confidence 3332211 11222233578898888888 9999999997654
No 375
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.72 E-value=9.3e-17 Score=129.32 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=122.9
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccC--ceeE----eccEEEEcCCCCCCCeEEEEEEEeCCCCcee
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG--GSIY----RGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 263 (384)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... .... ....|.|.++..+|+|.|+|.+.|..|.. +
T Consensus 25 p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~ 103 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE-S 103 (215)
T ss_dssp CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-E
T ss_pred CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-E
Confidence 445778899999999999999999999999998776543 1221 14689999999999999999999998876 6
Q ss_pred eEEEEEEEecCeEEecCCCcccccCCcEEEEEEEec----cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEE
Q psy16652 264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA----YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLR 337 (384)
Q Consensus 264 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (384)
..+.|.+..+|...... .....+..+.|.|.... .|.. .+.|..++...... .............|.
T Consensus 104 ~~~~l~v~~~P~~p~~~--~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~-----~~~~~~~~~~~~~l~ 176 (215)
T 3mtr_A 104 LEFILVQADTPSSPSID--QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS-----KWYDAKEASMEGIVT 176 (215)
T ss_dssp EEEEEEECCCCCCCEEE--EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE-----EEEEHHHHHHHTEEE
T ss_pred EEEEEEECCCCCCCcce--EEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc-----cccccccccccccEE
Confidence 67788887665422111 11234567888887422 2322 47888877432111 110000111237899
Q ss_pred EeecCCCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 338 VITIERRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 338 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.++...+.|.|+|.|.|..|....+..+.+..+|
T Consensus 177 i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 177 IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp EECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred ECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 99999999999999999999988777666665544
No 376
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.72 E-value=4.4e-17 Score=133.33 Aligned_cols=176 Identities=19% Similarity=0.252 Sum_probs=111.9
Q ss_pred eEEeecCceEEEEEEecccC----CCeEEEEeCCCccc-------c-----------------cCceeE------eccEE
Q psy16652 192 SVIVSEGQTVYLYCYANGFP----APTISWRRDNSAAL-------S-----------------TGGSIY------RGNIL 237 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~-------~-----------------~~~~~~------~~~~l 237 (384)
.+.+.+|++++|.|.+.+.+ ...+.|++...... . ..+... ....|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 88 (239)
T 3tv3_H 9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL 88 (239)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence 35688999999999997654 34899998432110 0 011111 11259
Q ss_pred EEcCCCCCCCeEEEEEEEeCCCC------------ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-c
Q psy16652 238 KIPNITKTDRGTYYCVAQNGVGR------------GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-Y 300 (384)
Q Consensus 238 ~i~~~~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~ 300 (384)
.|.+++.+|+|.|.|.+.+..+. .......|.|. .+|.+...++...+..|+.++|.|.+.+ +
T Consensus 89 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~ 168 (239)
T 3tv3_H 89 KLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYF 168 (239)
T ss_dssp EECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEB
T ss_pred EECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEe
Confidence 99999999999999999865210 01122345553 3566665555555667999999999988 5
Q ss_pred CCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 301 PPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 301 p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
|.+ .+.|++++..+...... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus 169 p~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~ 236 (239)
T 3tv3_H 169 PEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 236 (239)
T ss_dssp SSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCCeEEEEEECCccCceEecC-ceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEeccc
Confidence 544 58999988643211110 011111222234568899888888 99999999999887777666553
No 377
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.7e-16 Score=126.61 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=120.3
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+ ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..... ....++.+.. ......|.|
T Consensus 16 ~~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~------------~~~~~~~~~~--~~~~~~L~i 80 (215)
T 3mtr_A 16 HMYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPS------------SNYSNIKIYN--TPSASYLEV 80 (215)
T ss_dssp CCEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSC------------SSSCSEEEEE--ETTEEEEEE
T ss_pred eecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCC------------CCCccEEEec--CCCeeEEEE
Confidence 4456777 456667899999999999999988889999997754211 0113444443 234678999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEec----ccCCC--eEEEEeCCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN----GFPAP--TISWRRDNS 222 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~----~~~~~--~v~W~~~~~ 222 (384)
.+++.+|+|.|+|.+.|..+ ..+..+.|.|..+|..+.. ......+..+.|.|... +.|.. .+.|.+++.
T Consensus 81 ~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~P~~p~~---~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~ 156 (215)
T 3mtr_A 81 TPDSENDFGNYNCTAVNRIG-QESLEFILVQADTPSSPSI---DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE 156 (215)
T ss_dssp CCCSGGGCEEEEEEEECSSC-EEEEEEEEEECCCCCCCEE---EEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred ecCChhhCeEEEEEEEECCC-ceEEEEEEEECCCCCCCcc---eEEEEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence 99999999999999986554 4567788888776654321 11234567889999742 22332 478888765
Q ss_pred cccccCcee----EeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 223 AALSTGGSI----YRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 223 ~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
......... .....|.|.++...+.|.|+|.|.|..|..
T Consensus 157 ~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s 199 (215)
T 3mtr_A 157 EVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLG 199 (215)
T ss_dssp CCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred CcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCccc
Confidence 422111110 012689999999999999999999988875
No 378
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.72 E-value=7.8e-17 Score=140.91 Aligned_cols=165 Identities=14% Similarity=0.185 Sum_probs=115.3
Q ss_pred eecCceEEEEEEeccc---CC-CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCc
Q psy16652 195 VSEGQTVYLYCYANGF---PA-PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261 (384)
Q Consensus 195 ~~~g~~~~l~C~~~~~---~~-~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 261 (384)
+..|++++|.|.+.+. |. ..|.|++++..+... .........|.|..++.+|+|.|+|.+.+..+..
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 259 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 259 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence 6789999999999886 32 269999988554211 1112234479999999999999999999876532
Q ss_pred -eeeEEEE--EEEecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECCEEecCCCceeeeeeeccCccccceE
Q psy16652 262 -MKRNIAV--EVEFAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336 (384)
Q Consensus 262 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (384)
..+.+.+ .+..+|.+.+.+.......|+.++|.|.+.|. | .+.|.|++||.++.............+.....+.|
T Consensus 260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L 339 (376)
T 2aty_A 260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKL 339 (376)
T ss_pred ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEE
Confidence 2233332 55678888877766666668999999999985 3 34899999999875432222121222222334557
Q ss_pred EEeecCCCCCeEEEEEEEeCCcc
Q psy16652 337 RVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 337 ~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
.|.....+|.|.|+|.|.|..-.
T Consensus 340 ~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 340 NVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred EEcHHHhCCCCcEEEEEEeCCCC
Confidence 77777778899999999998654
No 379
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.72 E-value=1.8e-16 Score=128.49 Aligned_cols=178 Identities=21% Similarity=0.325 Sum_probs=113.3
Q ss_pred CcceeeeccCcEEEEEEeecC--CCccEEEEEeCCCCCCcccceecc-Cce----eeeCCceEEeeCCCCceEEEEEeec
Q psy16652 79 SQEQIKDIAQTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMS-GSL----IIHDSRFQLTTDPETSTYILSIKEI 151 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~ 151 (384)
+....+.+|++|+|.|.+.+. +...+.|++.........+..... ... ....+|+.+..+......+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL 86 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence 445778999999999998753 356899999764432222221111 111 1134688887665567889999999
Q ss_pred CCCCCeeEEEEEEEccC--------cceeeeEEEEEecC----CccccCCCceEEeecCceEEEEEEecc-cC-CCeEEE
Q psy16652 152 QETDAGIYKCEVIISLN--------NKVSAEVELIVRRP----PIISDNSTRSVIVSEGQTVYLYCYANG-FP-APTISW 217 (384)
Q Consensus 152 ~~~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~~~----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~v~W 217 (384)
+.+|+|.|.|.+.+... ........|.|... |.+... .+...+.+|+.+.|.|.+.+ .| .+.+.|
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W 165 (226)
T 3mlr_H 87 QASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSW 165 (226)
T ss_dssp CGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEE-EEEECSTTSSEEEEEEEEEEEBSSCCEEEE
T ss_pred CcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEe-cCcccccCCCCEEEEEEEEEEECCCeEEEE
Confidence 99999999999975421 11223445666432 222111 11222457999999999977 44 358999
Q ss_pred EeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 218 RRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 218 ~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++..+.. .++.....+.|.|.....+| |.|+|.+.|..+.
T Consensus 166 --~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 215 (226)
T 3mlr_H 166 --NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 215 (226)
T ss_dssp --GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGT
T ss_pred --CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCC
Confidence 3332211 11222233479999998888 9999999997654
No 380
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=1.6e-16 Score=129.17 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=107.9
Q ss_pred CceEEeecCceEEEEEEeccc--CCCeEEEEeCCC--ccc----------------ccCceeEe------ccEEEEcCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGF--PAPTISWRRDNS--AAL----------------STGGSIYR------GNILKIPNIT 243 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~--~~~----------------~~~~~~~~------~~~l~i~~~~ 243 (384)
+..+.+.+|++++|.|.+.+. +...+.|++... ... ...+.... ...|.|.+++
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 87 (230)
T 1ypz_F 8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE 87 (230)
T ss_dssp CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred CCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCC
Confidence 566778999999999999764 456899998542 110 01111111 1379999999
Q ss_pred CCCCeEEEEEEEeC--CC-CceeeEEEEEEE---------ecCeEEec-CCCcccccCCcEEEEEEEecc-CC-CeEEEE
Q psy16652 244 KTDRGTYYCVAQNG--VG-RGMKRNIAVEVE---------FAPVITIN-RPRQGQALQYDAILECHVEAY-PP-PAIVWI 308 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~--~~-~~~~~~~~l~v~---------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~ 308 (384)
.+|+|.|.|.+.+. .. ........|.|. .+|...+. +....+..|+.++|.|.+.+. |. +.+.|+
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~ 167 (230)
T 1ypz_F 88 EEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYWK 167 (230)
T ss_dssp GGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEEE
T ss_pred hhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEEE
Confidence 99999999999874 11 111233466665 12332222 233345568899999999885 75 599999
Q ss_pred E-CCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 309 K-DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 309 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
+ +|..+......... ...+.....+.|+|..... + |.|+|.|.|..+...
T Consensus 168 ~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~ 218 (230)
T 1ypz_F 168 EKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG 218 (230)
T ss_dssp CTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT
T ss_pred ccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc
Confidence 9 87766432211111 1111122245688877775 4 999999999887543
No 381
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.71 E-value=2.6e-18 Score=138.22 Aligned_cols=169 Identities=16% Similarity=0.237 Sum_probs=107.9
Q ss_pred CceEEeecCceEEEEEEecccCC---CeEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPA---PTISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
+....+.+|++++|.|.+.+.++ +.+.| ++ ...... .+.......|.|.+++.+|+|.|+|.+.|.
T Consensus 11 P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~~ 88 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYP 88 (214)
T ss_dssp CCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCS
T ss_pred cChHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEecC
Confidence 34445688999999999988654 68999 43 332210 111113346888888889999999999987
Q ss_pred CCCce-eeEEE-EEEEecCeEEecCC-CcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCCceee--eee---ec
Q psy16652 258 VGRGM-KRNIA-VEVEFAPVITINRP-RQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQHYSV--SHF---AT 327 (384)
Q Consensus 258 ~~~~~-~~~~~-l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~~--~~~---~~ 327 (384)
.+... ...+. +.+..+|.+.+.++ ...+..|+.+.|.|.+.|. |+ +.|.|++||..+........ ... ..
T Consensus 89 ~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~d 168 (214)
T 1ow0_A 89 ESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGT 168 (214)
T ss_dssp SCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSS
T ss_pred CCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCC
Confidence 65431 22222 12356787765443 3446788999999999985 54 49999999998865421111 111 11
Q ss_pred cCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 328 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
+.....+.|.+.....+|.|.|+|.|.|.....
T Consensus 169 gt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~~ 201 (214)
T 1ow0_A 169 TTFAVTSILRVAAEDWKKGDTFSCMVGHEALPL 201 (214)
T ss_dssp CCEEEEEEEEEEHHHHHHTCCEEEEEECTTCTT
T ss_pred CcEEEEEEEEECHHHccCCCEEEEEEECCCCCC
Confidence 111222345555555556899999999987543
No 382
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=130.27 Aligned_cols=170 Identities=18% Similarity=0.265 Sum_probs=110.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc-------c----------C-ceeEecc---EEEEcCCCCCCCe
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-------T----------G-GSIYRGN---ILKIPNITKTDRG 248 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-------~----------~-~~~~~~~---~l~i~~~~~~d~G 248 (384)
+..+.+.+|+++.|.|.+.+.+.+.+.|++....... . . +...... .|.|.+++.+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG 87 (253)
T 3to4_D 8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR 87 (253)
T ss_dssp CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence 4557789999999999988877889999983211100 0 0 1111111 1999999999999
Q ss_pred EEEEEEEeCCC---C--ceeeEEEEEEE------ecCeEEecC-CCcccccCCcEEEEEEEec-cCCC-eEEEEECCEEe
Q psy16652 249 TYYCVAQNGVG---R--GMKRNIAVEVE------FAPVITINR-PRQGQALQYDAILECHVEA-YPPP-AIVWIKDGVQI 314 (384)
Q Consensus 249 ~Y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~ 314 (384)
.|+|.+.+..+ . .......|.|. .+|.+.+.+ ....+..|+.++|.|.+.| +|++ .+.|+++|..+
T Consensus 88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l 167 (253)
T 3to4_D 88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV 167 (253)
T ss_dssp EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEEC
Confidence 99999986543 1 11223355554 456655433 2233445789999999998 6766 89999999998
Q ss_pred cCCCceeeeee------eccCccccceEEEeecCCCC-CeEEEEEEEeCCcc
Q psy16652 315 MNNQHYSVSHF------ATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGS 359 (384)
Q Consensus 315 ~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 359 (384)
........... ..+.....+.|.|.....+| .|.|+|.|.|..-.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 168 HSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence 65432211110 11112223567888887777 77999999998644
No 383
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.70 E-value=4.6e-16 Score=128.40 Aligned_cols=171 Identities=17% Similarity=0.261 Sum_probs=111.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCc--cc---------------ccCceeEe-----ccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--AL---------------STGGSIYR-----GNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~--~~---------------~~~~~~~~-----~~~l~i~~~~~~d~ 247 (384)
+..+.+.+|+++.|.|.+.. +.+.+.|++.... .. ...+.... ...|.|.+++.+|+
T Consensus 10 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~ 88 (252)
T 1oga_E 10 PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPT 88 (252)
T ss_dssp CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCC
T ss_pred CCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhC
Confidence 55678999999999999853 5679999986421 10 01111111 24799999999999
Q ss_pred eEEEEEEEeCCC--CceeeEEEEEEE------ecCeEEecC-CCcccccCCcEEEEEEEecc-CCC-eEEEEECCEEecC
Q psy16652 248 GTYYCVAQNGVG--RGMKRNIAVEVE------FAPVITINR-PRQGQALQYDAILECHVEAY-PPP-AIVWIKDGVQIMN 316 (384)
Q Consensus 248 G~Y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~ 316 (384)
|.|.|.+.+... ........|.|. .+|.+.+.. ....+..|+.++|.|.+.|. |.+ .+.|+++|..+..
T Consensus 89 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~ 168 (252)
T 1oga_E 89 AFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 168 (252)
T ss_dssp EEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECS
T ss_pred EEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCC
Confidence 999999998521 111122345554 367666543 33345578999999999985 654 9999999998865
Q ss_pred CCceeeee------eeccCccccceEEEeecCCC-CCeEEEEEEEeCCcceE
Q psy16652 317 NQHYSVSH------FATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQ 361 (384)
Q Consensus 317 ~~~~~~~~------~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~ 361 (384)
........ ...+.....+.|.|...... |.|.|+|.|.|......
T Consensus 169 ~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 169 GVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp SEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred CcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 43211000 01111122345777776664 57899999999876654
No 384
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.70 E-value=2.3e-16 Score=131.25 Aligned_cols=182 Identities=19% Similarity=0.308 Sum_probs=114.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeec--CCCccEEEEEeCCCCCCcccceeccCc-----eeeeCCceEEeeCCCCceEEE
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQY--ADDYPVIWMKMDTAKKMEPLPISMSGS-----LIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L 146 (384)
.+.. +....+.+|++|+|.|.+.+ .....+.|++.........+....... .....+|+.+..+......+|
T Consensus 26 ~v~q-~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 104 (267)
T 3u1s_H 26 QLVQ-SGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYM 104 (267)
T ss_dssp CEEE-CCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEE
T ss_pred eEEe-eCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEE
Confidence 3444 44577999999999999865 235689999976543222222221111 112347888887666678899
Q ss_pred EEeecCCCCCeeEEEEEEE-------cc--------------Cc---ceeeeEEEEEec----CCccccCCCceEEeecC
Q psy16652 147 SIKEIQETDAGIYKCEVII-------SL--------------NN---KVSAEVELIVRR----PPIISDNSTRSVIVSEG 198 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~-------~~--------------~~---~~~~~~~l~v~~----~~~~~~~~~~~~~~~~g 198 (384)
.|.+++.+|+|.|.|.+.+ .. .. .......|.|.. +|.+....+. ....+|
T Consensus 105 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g 183 (267)
T 3u1s_H 105 ELRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPS-SKSTSG 183 (267)
T ss_dssp EECSCCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-GGGEET
T ss_pred EECCCChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCC-cccCCC
Confidence 9999999999999999861 11 00 122244566652 2222211111 113478
Q ss_pred ceEEEEEEecc-cC-CCeEEEEeCCCcccc----------cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 199 QTVYLYCYANG-FP-APTISWRRDNSAALS----------TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 199 ~~~~l~C~~~~-~~-~~~v~W~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+.+.|.|.+.+ +| .+.+.| ++..+.. .++.....+.|.|.....+| +.|+|.+.|....
T Consensus 184 ~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 184 GTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp TEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred CcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCC
Confidence 99999999976 55 458999 4433321 11222233578898888888 9999999997544
No 385
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.70 E-value=2e-17 Score=135.00 Aligned_cols=178 Identities=14% Similarity=0.170 Sum_probs=105.0
Q ss_pred CCCCeeeeCccee--eeccCcEEEEEEeecC---CCc-cEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceE
Q psy16652 71 RTPTISYISQEQI--KDIAQTADLKCSVQYA---DDY-PVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144 (384)
Q Consensus 71 ~~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (384)
.+|.+...+.... +.+|++++|.|.+.+. |.+ .+.|++++...... .. .......+++|.. ..
T Consensus 14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~---~~-~~~~~~~~~~~~~-------~s 82 (239)
T 1i1c_A 14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTA---QT-HAPEKQSNSTLRS-------VS 82 (239)
T ss_dssp ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCC---EE-CCCEECTTSCEEE-------EE
T ss_pred cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCc---cc-ccceEcCCCcEEE-------EE
Confidence 4555555455544 7899999999999875 544 89999987542110 00 0000111223322 34
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEe
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRR 219 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~ 219 (384)
.|.|.+++.+|+|.|+|.+.+..+.. ....+.+ .+..+|.+........ ...|+.+.|.|.+.| +|. ..+.|++
T Consensus 83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k 161 (239)
T 1i1c_A 83 ELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKM 161 (239)
T ss_dssp EEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred EEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence 79999999999999999998655432 2222222 2223443332211111 134789999999988 555 4899999
Q ss_pred CCCcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 220 DNSAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 220 ~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
++..+..... .......|.|.....+|.|.|+|.|.|....
T Consensus 162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 9876542211 1111223555555556799999999996543
No 386
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.70 E-value=9.4e-16 Score=146.13 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=151.5
Q ss_pred cCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEc
Q psy16652 87 AQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166 (384)
Q Consensus 87 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 166 (384)
+..+.|.|.+.+.|.+.+.|.+++...... ...++.+.. .......|.+..+..+|.|.|.|.
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~------------~~~~~~i~~-~~~~~~~l~~~~va~~~~G~~~~~---- 153 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW------------NRAELAIST-FWPNFYQVIFEVITSGHQGYLAID---- 153 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC------------EEEEEEECC-CTTSCEEEEEEEEECSSCCEEEEC----
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce------------eEEEEEEee-cCCCceEEEEEEEecCCceEEEEe----
Confidence 458999999999898999999988652100 001111110 002223344444444555555442
Q ss_pred cCcceeeeEEEEE---ecCCccccCCCceEEeecCceEEEEEEecccCCCeEE-EE--eCCCcccccCcee----EeccE
Q psy16652 167 LNNKVSAEVELIV---RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS-WR--RDNSAALSTGGSI----YRGNI 236 (384)
Q Consensus 167 ~~~~~~~~~~l~v---~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-W~--~~~~~~~~~~~~~----~~~~~ 236 (384)
.+.+.+ ..+|.+. .+....+.+|+++.|.|.+.|.|.+.+. |+ +++..+....... ...+.
T Consensus 154 -------~v~~~~~~~~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~ 224 (731)
T 2v5y_A 154 -------EVKVLGHPCTRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIAS 224 (731)
T ss_dssp -------CBEEESSCCSSSCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEE
T ss_pred -------eEEeeecccccccccc--cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEE
Confidence 112221 1344443 2456789999999999999999999887 88 5665543321111 12358
Q ss_pred EEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc---CCC---eEEEEEC
Q psy16652 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY---PPP---AIVWIKD 310 (384)
Q Consensus 237 l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~---~v~W~~~ 310 (384)
|.|.++..+|+|.|+|.|.|..|...+....|.|..+|.....+. ........+.|.|..... .+. .+.|...
T Consensus 225 l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~-~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~ 303 (731)
T 2v5y_A 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQ-LASVGATYLWIQLNANSINGDGPIVAREVEYCTA 303 (731)
T ss_dssp EEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCE-EEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred EEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcc-eeccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence 999999999999999999999887446667788888776432222 222344678888876321 222 4566554
Q ss_pred CEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEE--eCCcceEEEEEEEEeee
Q psy16652 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA--NKYGSAQKEIELFDRET 371 (384)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~~~~~l~v~~~ 371 (384)
+. .+..... .....+.|.++...+...|.|.|. |..|....+..+.+...
T Consensus 304 ~~------~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~ 355 (731)
T 2v5y_A 304 SG------SWNDRQP-----VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTK 355 (731)
T ss_dssp SS------SCEEEEE-----CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECC
T ss_pred CC------CceEEec-----cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeec
Confidence 21 1111110 134678899998888888899999 99997664433444433
No 387
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.69 E-value=1.7e-17 Score=132.81 Aligned_cols=176 Identities=13% Similarity=0.220 Sum_probs=97.4
Q ss_pred CCeeeeCcceee--eccCcEEEEEEeecCC----CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEE
Q psy16652 73 PTISYISQEQIK--DIAQTADLKCSVQYAD----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146 (384)
Q Consensus 73 p~~~~~~~~~~v--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 146 (384)
|.+...+....+ .+|++++|.|.+.+.+ ...+.|++++....... ........++.+.+.. .|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~----~~~~~~~~~g~~~~~~-------~l 70 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK----TKPREEQYNSTYRVVS-------VL 70 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCE----ECCCEECTTSCEEEEE-------EE
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcc----cCCceeccCCcEEEEE-------EE
Confidence 344444444433 7999999999998754 35899999875421110 0000011122222221 34
Q ss_pred EEeecCCCCCeeEEEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEecc-cCC-CeEEEEeCC
Q psy16652 147 SIKEIQETDAGIYKCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPA-PTISWRRDN 221 (384)
Q Consensus 147 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~v~W~~~~ 221 (384)
.|.....+|+|.|+|.+.+..+.. ....+.+ .+..+|.+....+.... ..|..+.|.|.+.| +|. +.+.|++++
T Consensus 71 ~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 1l6x_A 71 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNG 149 (207)
T ss_dssp ECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred EEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHH-hcCCcEEEEEEEeCeECCCeEEEEEECC
Confidence 444444556999999998654432 1222221 22333433322111111 24567999999988 454 389999998
Q ss_pred CcccccCc---------eeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 222 SAALSTGG---------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 222 ~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
..+..... .......|.+.....+|+|.|+|.|.|....
T Consensus 150 ~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 150 QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp EEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred eeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 76542111 1111224555555556799999999996543
No 388
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.69 E-value=3.8e-17 Score=116.07 Aligned_cols=103 Identities=23% Similarity=0.430 Sum_probs=72.0
Q ss_pred EEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 266 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
+.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+..... ....|.|.+++.+|
T Consensus 3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D 75 (108)
T 3kvq_A 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD-------GNRNLTIRRVRKED 75 (108)
T ss_dssp --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET-------TTTEEEECSCCGGG
T ss_pred eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC-------CCcEEEEeecCccc
Confidence 55667778888877788889999999999999999999999999998887665544432 45789999999999
Q ss_pred CeEEEEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 346 FGQYACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
+|.|+|.|.|..|.....+.|.|.+++..+
T Consensus 76 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 105 (108)
T 3kvq_A 76 EGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105 (108)
T ss_dssp CEEEEEEEC----CEEEEEEEEEEC-----
T ss_pred CEEEEEEEEeCCCceEEEEEEEEeCCCccc
Confidence 999999999999999999999999887544
No 389
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.69 E-value=5.9e-17 Score=132.11 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=106.9
Q ss_pred EEeecCceEEEEEEecccC--CCeE--EEEeCCCccc---------cc------------CceeEe------ccEEEEcC
Q psy16652 193 VIVSEGQTVYLYCYANGFP--APTI--SWRRDNSAAL---------ST------------GGSIYR------GNILKIPN 241 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~~--~~~v--~W~~~~~~~~---------~~------------~~~~~~------~~~l~i~~ 241 (384)
..+.+|++++|.|.+.+.+ ...+ .|++...... .. .+.... ...|.|.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 89 (232)
T 3qhz_H 10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN 89 (232)
T ss_dssp SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence 4578999999999986532 2344 9998432110 00 111111 12699999
Q ss_pred CCCCCCeEEEEEEEeCCC-------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEeccCCC--eEEEE
Q psy16652 242 ITKTDRGTYYCVAQNGVG-------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYPPP--AIVWI 308 (384)
Q Consensus 242 ~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~ 308 (384)
++.+|+|.|.|.+.+..+ ........|.|. .+|.+...++...+..|+.++|.|.+.+.+++ .+.|+
T Consensus 90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~ 169 (232)
T 3qhz_H 90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 169 (232)
T ss_dssp CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence 999999999999987521 112233455554 45666644454556679999999999885443 68899
Q ss_pred ECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+++..+...... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.+.
T Consensus 170 ~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 170 SGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp GGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred ECCEecceeecc-ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 988643211100 001111112223578899988889 99999999999888777776543
No 390
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.68 E-value=1.9e-16 Score=130.05 Aligned_cols=178 Identities=18% Similarity=0.288 Sum_probs=109.6
Q ss_pred ceEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc---------c----------cCceeE------eccEEEEcCCC
Q psy16652 191 RSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL---------S----------TGGSIY------RGNILKIPNIT 243 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~---------~----------~~~~~~------~~~~l~i~~~~ 243 (384)
....+.+|++++|.|.+.+ .+...+.|++...... . ..+... ....|.|.+++
T Consensus 7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (248)
T 3u2s_H 7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR 86 (248)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 4467889999999999965 2345799997532110 0 011111 11259999999
Q ss_pred CCCCeEEEEEEEeCCC---------------------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEe
Q psy16652 244 KTDRGTYYCVAQNGVG---------------------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVE 298 (384)
Q Consensus 244 ~~d~G~Y~C~~~~~~~---------------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~ 298 (384)
.+|+|.|.|.+.+..+ ........|.|. .+|.+...++...+..|+.++|.|.+.
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~ 166 (248)
T 3u2s_H 87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK 166 (248)
T ss_dssp GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEE
T ss_pred HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEe
Confidence 9999999999986410 111223455554 456666555555556799999999998
Q ss_pred c-cC-CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 299 A-YP-PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 299 ~-~p-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+ +| ++.+.|+++|..+..... .......+.....+.|+|.....+| |.|+|.|.|..+.......|.+..
T Consensus 167 ~~~P~~~~v~W~~~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~~~ 238 (248)
T 3u2s_H 167 DYFPEPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS 238 (248)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEEC-CCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC--
T ss_pred eEECCCeEEEEeECCccCceeec-CceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEccCC
Confidence 7 45 347999998864321110 0011111222234568888888888 999999999998877776666543
No 391
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.68 E-value=8.1e-16 Score=107.22 Aligned_cols=95 Identities=21% Similarity=0.170 Sum_probs=80.0
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+....... .....|.|.+++.+|+|.|+|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C 79 (99)
T 1g1c_A 4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE----DNVCELVIRDVTGEDSASIMV 79 (99)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEE----TTEEEEEECSCCGGGCEEEEE
T ss_pred CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcC----CCEEEEEECCCCcCCCEEEEE
Confidence 3566766777788899999999999999999999999999999877665543211 134579999999999999999
Q ss_pred EEEeCCcceEEEEEEEEee
Q psy16652 352 KAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~ 370 (384)
.|.|..|....++.|.|.+
T Consensus 80 ~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 80 KAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCcEEEEEEEEEec
Confidence 9999999999999999875
No 392
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.68 E-value=3.5e-16 Score=109.61 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEE
Q psy16652 286 ALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365 (384)
Q Consensus 286 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 365 (384)
..+..+.|.|.+.|.|.|.+.|+++|..+..+.+..............+.|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 45778999999999999999999999999877654332222222223566999999999999999999999999999999
Q ss_pred EEEeeeec
Q psy16652 366 LFDRETQT 373 (384)
Q Consensus 366 l~v~~~~~ 373 (384)
|.|.++|.
T Consensus 94 l~V~~~P~ 101 (103)
T 1wwb_X 94 AHFMGWPG 101 (103)
T ss_dssp ECCSCCCC
T ss_pred EEECCCCC
Confidence 99988764
No 393
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=110.89 Aligned_cols=96 Identities=17% Similarity=0.252 Sum_probs=81.9
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... .....|.|.+++.+|+|.|+
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~ 80 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT-----SGVLTLEILDCHTDDSGTYR 80 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE-----TTEEEEEECSCCGGGCEEEE
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEEcCCCcccCEEEE
Confidence 3467777777778889999999999999999999999999999987776655421 13457999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeee
Q psy16652 351 CKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~ 371 (384)
|.|.|..|.....+.|.|.+.
T Consensus 81 C~a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 81 AVCTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEEEETTEEEEEEEEEEEECC
T ss_pred EEEEeCCCcEEEEEEEEEECC
Confidence 999999999999999998764
No 394
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.68 E-value=4.2e-16 Score=144.80 Aligned_cols=174 Identities=18% Similarity=0.267 Sum_probs=115.9
Q ss_pred cceeeeccCcEEEEEEe-ecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 80 QEQIKDIAQTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
....+.+|++++|.|.+ .+.+.+.+.|++++........ ....++ ....+|+.+..+ .+|.|.+++.+|+|.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-~~~~~~-~~~~~r~~~~~~-----~~L~i~~v~~~D~G~ 446 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKV-LSPQGG-GPWDSVARVLPN-----GSLFLPAVGIQDEGI 446 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEE-CCSCCS-SGGGGTSEECTT-----SCEEESSCCGGGCEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEe-cccCCC-CCcCCcEEEcCC-----ceEEEeccccccCeE
Confidence 34568899999999998 6677889999998763211100 000000 011234443321 269999999999999
Q ss_pred EEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCce-EEEEEEecc-cCCCeEEEEeCCCcccccCcee-----
Q psy16652 159 YKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQT-VYLYCYANG-FPAPTISWRRDNSAALSTGGSI----- 231 (384)
Q Consensus 159 Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~----- 231 (384)
|+|.+.+..+......+.|.|..+|..+........+.+|.. +.|.|.+.+ +|.+.+.|++++..+.......
T Consensus 447 Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~ 526 (581)
T 3o3u_N 447 FRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ 526 (581)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred EEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence 999998766555577888988875543322222223555554 567999977 6899999999987765432211
Q ss_pred ----------EeccEEEEcCCC-CCCCeEEEEEEEeCCCC
Q psy16652 232 ----------YRGNILKIPNIT-KTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 232 ----------~~~~~l~i~~~~-~~d~G~Y~C~~~~~~~~ 260 (384)
.-.++|.|..++ .++.|.|+|.++|....
T Consensus 527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~ 566 (581)
T 3o3u_N 527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR 566 (581)
T ss_dssp EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence 113479999988 55588999999997543
No 395
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.67 E-value=6e-16 Score=125.87 Aligned_cols=176 Identities=18% Similarity=0.296 Sum_probs=113.1
Q ss_pred eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc-------------------ccCceeE-e-----ccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL-------------------STGGSIY-R-----GNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~-------------------~~~~~~~-~-----~~~l~i~~~~~ 244 (384)
.+.+.+|++++|.|.+.+ .....+.|++...... ...+... . ...|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (230)
T 3n9g_H 9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS 88 (230)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence 466889999999999865 2345799997432110 0011111 1 12599999999
Q ss_pred CCCeEEEEEEEeCC-----CC--ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEECC
Q psy16652 245 TDRGTYYCVAQNGV-----GR--GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKDG 311 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~-----~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~ 311 (384)
+|+|.|.|.+.+.. +. .......|.|. .+|.+...++...+..|+.++|.|.+.+. | .+.+.| ++
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~ 166 (230)
T 3n9g_H 89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS 166 (230)
T ss_dssp GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CC
Confidence 99999999998753 11 11233455553 35666544555556689999999999884 4 347999 66
Q ss_pred EEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 312 VQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 312 ~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
..+....... ......+.....+.|+|.....+| |.|+|.|.|..+.......|.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 167 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp GTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred cccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence 5443221100 011111222234578999999999 999999999998877777776654
No 396
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.67 E-value=1.6e-16 Score=129.24 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=107.9
Q ss_pred CCCCee-eeCcceeeeccCcEEEEEEeecC-CC--ccEEEEEeCCCCCCcccceeccCce--eeeCCceEEeeCCCCceE
Q psy16652 71 RTPTIS-YISQEQIKDIAQTADLKCSVQYA-DD--YPVIWMKMDTAKKMEPLPISMSGSL--IIHDSRFQLTTDPETSTY 144 (384)
Q Consensus 71 ~~p~~~-~~~~~~~v~~g~~v~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 144 (384)
.+|.+. ..+....+.+|+.++|.|.+.+. |. ..+.|++++.... ...... ...++.|.. ..
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~------~~~~~~~~~~~~g~~~~-------~s 77 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNL------RPDPMVLQEHFNGTYSA-------SS 77 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCC------CCCCCEEEECTTSCEEE-------EE
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeecc------ccccccceECCCCcEEE-------EE
Confidence 345554 44555567899999999999874 53 4999998775430 000000 012223322 34
Q ss_pred EEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEe------cCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEE
Q psy16652 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR------RPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTIS 216 (384)
Q Consensus 145 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~ 216 (384)
.|.|.+++.+|+|.|+|.+.+.... ..+.+.|. .+|.+....+....+ .+..+.|.|.+.+. |. +.+.
T Consensus 78 ~L~I~~~~~~D~g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~ 153 (231)
T 2w59_A 78 AVPVSTQDWLSGERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIR 153 (231)
T ss_dssp EEECCHHHHHTTCCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEE
T ss_pred EEEecchhccCCCEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEE
Confidence 7999999999999999999865432 23344443 233222111111112 25579999999884 43 6899
Q ss_pred EEeCCCcccccC--------------------ceeEeccEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 217 WRRDNSAALSTG--------------------GSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 217 W~~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
|++++..+.... +.....+.|.|.....+|+|.|+|.|.|....
T Consensus 154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 154 WLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp EEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred EEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 999987664332 11112246778888888899999999997654
No 397
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.67 E-value=9.1e-16 Score=124.07 Aligned_cols=180 Identities=17% Similarity=0.172 Sum_probs=110.2
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+...+..+.+.+|++|+|.|.+.+.+ ...+.|++.........+............+|+.+..+...+...|.|.+++
T Consensus 4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 83 (229)
T 1hxm_A 4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS 83 (229)
T ss_dssp EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence 45557777899999999999987543 4579999976432212221111111111357888876545677899999999
Q ss_pred CCCCeeEEEEEEEccC-----c--ceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC-eEEEEeCCCc
Q psy16652 153 ETDAGIYKCEVIISLN-----N--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSA 223 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~ 223 (384)
.+|+|.|+|.+.+... . .......|.|....... ..+.+.+.. ....|.|.+.+ +|.+ .+.|.++ ..
T Consensus 84 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~--~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~ 159 (229)
T 1hxm_A 84 ERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPH--TKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK 159 (229)
T ss_dssp GGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCC--BCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred HhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCC--cCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence 9999999999975421 1 12234567776422111 122222222 23589999987 4554 8999998 65
Q ss_pred ccccCcee--EeccEEEEcCCC-CCCCeEEEEEEEeCC
Q psy16652 224 ALSTGGSI--YRGNILKIPNIT-KTDRGTYYCVAQNGV 258 (384)
Q Consensus 224 ~~~~~~~~--~~~~~l~i~~~~-~~d~G~Y~C~~~~~~ 258 (384)
+....... ..++.+.+.... .++.|.|+|.+.|..
T Consensus 160 ~~~~~~~~~~~~dg~y~~~~~~~~~~~~~ytC~V~h~~ 197 (229)
T 1hxm_A 160 ITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHDN 197 (229)
T ss_dssp EEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEETT
T ss_pred EecCccceEECCCCcEEEEECcccCCCCcEEEEEEeCC
Confidence 54322211 122344443333 367889999999964
No 398
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=108.21 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=78.9
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+....... .....|.|.+++.+|+|.|+|
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C 79 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE----KGLHSLIFEVVRASDAGAYAC 79 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEET----TTEEEEEESSCCGGGCEEEEE
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcC----CCeEEEEECCCCcccCEEEEE
Confidence 4566666667778899999999999999999999999999998776544333211 123589999999999999999
Q ss_pred EEEeCCcceEEEEEEEEeee
Q psy16652 352 KAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~~ 371 (384)
.|.|..|....++.|.|.+.
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 80 VAKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEECC
T ss_pred EEEcCCCeEEEEEEEEEEec
Confidence 99999999999999998764
No 399
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.66 E-value=8.9e-17 Score=130.80 Aligned_cols=197 Identities=12% Similarity=0.174 Sum_probs=103.4
Q ss_pred EEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCeeeeCc-cee-eeccCcEEEEEEeecCC----CccEEEEEeCCCCC
Q psy16652 41 TSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQ-EQI-KDIAQTADLKCSVQYAD----DYPVIWMKMDTAKK 114 (384)
Q Consensus 41 G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~ 114 (384)
|.|.|.++..... +.......+|.+.+.+. ... +..|+.++|.|.+.+.. ...|.|++++....
T Consensus 1 ~~~~~~~~~~~~~----------c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~ 70 (240)
T 4acp_A 1 GTKSCDKTHTCPP----------CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH 70 (240)
T ss_dssp --------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEEC
T ss_pred CceeeeeeecCCC----------CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccC
Confidence 7888988875332 11111223455544443 333 55799999999998853 44799999876532
Q ss_pred CcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeEEEEEEEccCc-ceeeeEEE--EEecCCccccCCCc
Q psy16652 115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVEL--IVRRPPIISDNSTR 191 (384)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l--~v~~~~~~~~~~~~ 191 (384)
... ........++.|.... .|.|.....+|.|.|+|++.+.... .....+.+ .+..+|.+....+.
T Consensus 71 ~~~----~~~~~~~~~g~~~~~s-------~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~ 139 (240)
T 4acp_A 71 NAK----TKPREEQYNSTYRVVS-------VLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPS 139 (240)
T ss_dssp CCE----ECCCEEC---CEEEEE-------EEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCC
T ss_pred Cce----eccceECCCCeEEEEE-------EEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCC
Confidence 110 0000111234444433 6888888888899999999865442 22222222 12233433322221
Q ss_pred eEEeecCceEEEEEEecc-cCCC-eEEEEeCCCccccc---------CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 192 SVIVSEGQTVYLYCYANG-FPAP-TISWRRDNSAALST---------GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
.. ...|+.+.|.|.+.+ +|.+ .+.|++++..+... ++.....+.|.+.....++.|.|+|.|.|..-
T Consensus 140 ~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 140 RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp GG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred hH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 11 124889999999988 5554 89999998765321 11222334677766666678999999999653
No 400
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.65 E-value=1.1e-15 Score=108.15 Aligned_cols=98 Identities=23% Similarity=0.293 Sum_probs=81.9
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
+..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y 84 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD-----GAEHGLLLTAALPTDAGVY 84 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEE-----TTEEEEEESSCCGGGCEEE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeC-----CCEEEEEEccCCHHhCEEE
Confidence 34577777777778899999999999999999999999999999987776655431 1234799999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEeeee
Q psy16652 350 ACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 350 ~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
+|.|.|..|.....+.|.|.++|
T Consensus 85 ~C~a~n~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 85 VCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEEEETTEEEEEEEEEEEEC--
T ss_pred EEEEEcCCCcEEEEEEEEEEcCC
Confidence 99999999999999999998764
No 401
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.65 E-value=1.8e-15 Score=105.43 Aligned_cols=95 Identities=27% Similarity=0.427 Sum_probs=77.7
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......... ......+|.|.+++.+|+|.|+|
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~Y~C 79 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE----AEGGLCRLRILAAERGDAGFYTC 79 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEE----CGGGEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE----CCCCEEEEEEccCCcCCCEEEEE
Confidence 46777777777788999999999999999999999999999887654322211 11123479999999999999999
Q ss_pred EEEeCCcceEEEEEEEEee
Q psy16652 352 KAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~ 370 (384)
.|.|..|....++.|.|.+
T Consensus 80 ~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 80 KAVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCceeEEEEEEEEC
Confidence 9999999999999999875
No 402
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.65 E-value=1.9e-15 Score=105.36 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=80.3
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|+++|..+....++.+... .....|.|.+++.+|+|.|+|
T Consensus 5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C 79 (99)
T 3puc_A 5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED-----KGGFFLEIHKTDTSDSGLYTC 79 (99)
T ss_dssp EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEE
T ss_pred CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe-----CCEEEEEECCCCcccCEEEEE
Confidence 466777777778889999999999999999999999999999987777665431 123479999999999999999
Q ss_pred EEEeCCcceEEEEEEEEee
Q psy16652 352 KAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~ 370 (384)
.|.|..|....++.|.|.+
T Consensus 80 ~a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 80 TVKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCcEeEEEEEEEEe
Confidence 9999999999999998864
No 403
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.65 E-value=4.7e-16 Score=106.96 Aligned_cols=90 Identities=19% Similarity=0.256 Sum_probs=73.7
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECC--EEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDG--VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++ ..+......... .....|.|.+++.+|+|.|+
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~ 74 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-------SSTTSIFFPSAKRADSGNYK 74 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEE-------TTEEEEECTTBCGGGCEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEec-------CCEEEEEECCCChhcCEEEE
Confidence 566655566677899999999999999999999999999 777544322211 13577999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEe
Q psy16652 351 CKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~ 369 (384)
|.|.|..|....++.|.|.
T Consensus 75 C~a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 75 LKVKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEEEETTEEEEEEEEEEEC
T ss_pred EEEEcCCCeEEEEEEEEEC
Confidence 9999999999999988873
No 404
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.65 E-value=8.1e-16 Score=116.54 Aligned_cols=107 Identities=23% Similarity=0.381 Sum_probs=86.2
Q ss_pred EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
.+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+.... .....|.|.+++.+|.
T Consensus 35 ~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~ 110 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE----EGNCSLTISEVCGDDD 110 (154)
T ss_dssp CCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT----TCEEEEEESSCCGGGC
T ss_pred cccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECC----CCeEEEEECCCChhcC
Confidence 445556788888777888999999999999999999999999999999877766654311 1246899999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeeeecCCcc
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRETQTGDET 377 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~ 377 (384)
|.|+|.|.|..|....++.|.|..+|...+.
T Consensus 111 G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~ 141 (154)
T 1fhg_A 111 AKYTCKAVNSLGEATCTAELLVETMGKEGEG 141 (154)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECC------
T ss_pred EEEEEEEEECCCeEEEEEEEEEeCcCcCCCC
Confidence 9999999999999999999999988755443
No 405
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=108.54 Aligned_cols=100 Identities=18% Similarity=0.297 Sum_probs=82.3
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+.... ....+|.|.+++.+|+|.|+
T Consensus 14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~ 89 (116)
T 2kkq_A 14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN----TGRVTLLIKDVNKKDAGWYT 89 (116)
T ss_dssp BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT----TCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC----CCeEEEEECCCCcccCEEEE
Confidence 467777777788899999999999999999999999999998875 3454443211 12347999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 351 CKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
|.|.|..|.....+.|.|..+|..+
T Consensus 90 C~a~N~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 90 VSAVNEAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEETTEEEEEEEEEEEECCSCCC
T ss_pred EEEEcCCCeEEEEEEEEEeCCCCCC
Confidence 9999999999999999999887543
No 406
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.64 E-value=2.5e-15 Score=107.29 Aligned_cols=88 Identities=17% Similarity=0.247 Sum_probs=71.6
Q ss_pred cCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeec--cCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEE
Q psy16652 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT--SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364 (384)
Q Consensus 287 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 364 (384)
.+..+.|.|.+.|+|.|+|+|++||.++..+.+........ ......+.|.|.+++..|+|.|+|.|.|..|....++
T Consensus 14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~ 93 (126)
T 1he7_A 14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93 (126)
T ss_dssp CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence 56789999999999999999999999998777654432211 1111246799999999999999999999999999999
Q ss_pred EEEEeeeecC
Q psy16652 365 ELFDRETQTG 374 (384)
Q Consensus 365 ~l~v~~~~~~ 374 (384)
.|.|...|..
T Consensus 94 ~l~v~~~P~~ 103 (126)
T 1he7_A 94 MAAFMDNPFE 103 (126)
T ss_dssp EECCCSCTTS
T ss_pred EEEEEcCCCC
Confidence 9998877654
No 407
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.64 E-value=2.1e-13 Score=130.01 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=140.4
Q ss_pred CCCCCcchhccccCCCCC---CCCCC--CCceEEEEEeeecceEEEEEEEeeeccchhHHHHHHHHHhhhhcccCCCCee
Q psy16652 2 IAPSPFDFVNRFQNTSTP---WDPST--QKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTIS 76 (384)
Q Consensus 2 ~~~~~~w~~~~~~~~~~~---~~~~~--~~~~~l~i~~~~~~d~G~y~c~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 76 (384)
|.+.+.|.+++.++..-. ..... ....++.+..+...|.|.|.|....... .....+|.+.
T Consensus 104 P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~--------------~~~~~~p~~~ 169 (731)
T 2v5y_A 104 PLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLG--------------HPCTRTPHFL 169 (731)
T ss_dssp CCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEES--------------SCCSSSCEEC
T ss_pred CccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeee--------------cccccccccc
Confidence 567899999987764211 00011 3445567777777777777764221100 1123556665
Q ss_pred eeCcceeeeccCcEEEEEEeecCCCccEE-EEE--eCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYADDYPVI-WMK--MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~-W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+....+.+|++++|.|.+.+.|.+.+. |++ ++..+ . . ..+.. ........+|.|.+++.
T Consensus 170 -~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l-------~-------~-~~~~~-~~~~~~~~~l~I~~~~~ 232 (731)
T 2v5y_A 170 -RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA-------P-------L-KEIKV-TSSRRFIASFNVVNTTK 232 (731)
T ss_dssp -CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCE-------E-------E-EEEEE-CCSSEEEEEEEECSCCT
T ss_pred -cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccc-------c-------c-cceEE-eccccceEEEEEccccc
Confidence 4567889999999999999998888887 884 33221 0 0 00100 00112246899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc----cCCC--eEEEEeCCCccccc
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG----FPAP--TISWRRDNSAALST 227 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~----~~~~--~v~W~~~~~~~~~~ 227 (384)
.|+|.|+|.+.|..+...+....|.|..+|.... +..........+.|.|.... .+.. .+.|...+.....
T Consensus 233 ~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~--~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~- 309 (731)
T 2v5y_A 233 RDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIA--PPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND- 309 (731)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEEEEECCCCBSS--CCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEE-
T ss_pred ccCeEEEEEEECCCCCcceeeEEEEEecCCCCCC--CcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceE-
Confidence 9999999999977654466677888887776542 22233335568899997632 1222 4667654322110
Q ss_pred CceeEeccEEEEcCCCCCCCeEEEEEEE--eCCCCc
Q psy16652 228 GGSIYRGNILKIPNITKTDRGTYYCVAQ--NGVGRG 261 (384)
Q Consensus 228 ~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~ 261 (384)
........+.|.++...+...|+|.+. |..|..
T Consensus 310 -~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s 344 (731)
T 2v5y_A 310 -RQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344 (731)
T ss_dssp -EEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSC
T ss_pred -EeccCcceEEEeCCCCCCEEEEEEEEEecCCCccc
Confidence 111234678999999888888888888 877764
No 408
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=106.35 Aligned_cols=93 Identities=23% Similarity=0.412 Sum_probs=78.3
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
.+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... ....|.|.+++.+|+|.|+
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~ 78 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ--------EQGTLQIKNLRISDTGTYT 78 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC--------TTCCEEEESCCTTTCCEEE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc--------CCCEEEEccCCcccCEEEE
Confidence 467777777777889999999999999999999999999988863 3333321 3567999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeeee
Q psy16652 351 CKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|.|..|....++.|.|.+++
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 79 CVATSSSGETSWSAVLDVTESG 100 (100)
T ss_dssp EEEECSSCCCBCCEEEEEESCC
T ss_pred EEEEcCCCCEEEEEEEEEecCC
Confidence 9999999999999999988753
No 409
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.64 E-value=9.1e-16 Score=107.99 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=77.9
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+ ..+.++.+.. .....+|.|
T Consensus 10 ~~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I 73 (107)
T 3knb_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--------------AASERLSFPA--DGAEHGLLL 73 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEECCE--ETTEEEEEE
T ss_pred CCCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccc--------------cceeeEEEee--cCceEEEEE
Confidence 445789999999999999999999999999998999999987642 2334555544 345678999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 183 (384)
.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|
T Consensus 74 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 74 TAALPTDAGVYVCRARNAA-GEAYAAAAVTVLEPP 107 (107)
T ss_dssp SSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC--
T ss_pred ecCChhhCEEEEEEEEECC-CEEEEEEEEEEEcCC
Confidence 9999999999999998655 456677888887664
No 410
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.64 E-value=1.2e-14 Score=111.60 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=110.1
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+.+.|+...|.+|+++.|+|.+....+..+.|...-.. . . ..+...+...|.|.+++.
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------~--~-------~~~~~~~~~~l~l~~vs~- 59 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPK------------K--E-------LLLPGNNRKVYELSNVQE- 59 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCE------------E--E-------ECSSSSSEEEEEEEEECS-
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCC------------c--c-------EeccCCceeEEEEEecCc-
Confidence 45567778899999999999986544445777641110 0 0 001123334689999984
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccCcee
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTGGSI 231 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~ 231 (384)
| |.|.|.+. ..+...+..+.|.|+.+|......+....+.+|+.++|.|.+.+ .|.. .|+|++++..+.......
T Consensus 60 ~-g~y~C~~~-c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~ 137 (185)
T 1iam_A 60 D-SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVG 137 (185)
T ss_dssp C-BCCEEEEE-CSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT
T ss_pred C-CEEEEEEE-CCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCC
Confidence 4 99999984 55567888899999988876655555556899999999999976 5554 489999987764322000
Q ss_pred -EeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 232 -YRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 232 -~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
..+.+|++.....+|...|+|.|.+..+
T Consensus 138 ~~~~~tl~~~~~reD~g~~~sC~A~~~l~ 166 (185)
T 1iam_A 138 EPAEVTTTVLVRRDHHGAQFSCRTELDLR 166 (185)
T ss_dssp TTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred ccccEEEEEeceeccCCCeEEEEEEecCc
Confidence 1123577665555565699999999766
No 411
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.63 E-value=1.6e-15 Score=122.97 Aligned_cols=172 Identities=17% Similarity=0.293 Sum_probs=105.8
Q ss_pred eEEeecCceEEEEEEeccc--CCCeEEEEeCCCccc--------c-----------cCceeE------eccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGF--PAPTISWRRDNSAAL--------S-----------TGGSIY------RGNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~--------~-----------~~~~~~------~~~~l~i~~~~~ 244 (384)
.+.+.+|++++|.|.+.+. +...+.|++...... . ..+... ....|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 4668999999999998652 345799998432110 0 011111 112599999999
Q ss_pred CCCeEEEEEEEeCCC--------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-C-CCeEEEEEC
Q psy16652 245 TDRGTYYCVAQNGVG--------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-P-PPAIVWIKD 310 (384)
Q Consensus 245 ~d~G~Y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~ 310 (384)
+|+|.|.|.+.+..+ ........|.|. .+|.+...++...+..|+.+.|.|.+.+. | .+.+.| +
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~ 166 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--N 166 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--G
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--C
Confidence 999999999976421 000122345553 34555543333345678999999999884 4 347999 5
Q ss_pred CEEecCCCce-eeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEE
Q psy16652 311 GVQIMNNQHY-SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366 (384)
Q Consensus 311 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 366 (384)
+..+...... .......+.....+.|+|.....+| |.|+|.|.|..+.......|
T Consensus 167 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 167 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp GGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred CccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 4433221100 0011111222234578899998889 99999999998876655444
No 412
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-16 Score=111.25 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=84.0
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........... ......|.|.+++.+|+|.|+|
T Consensus 8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR----ENGVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEEC----TTSCEEEEESSCCGGGCSBBCE
T ss_pred CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEe----cCCeEEEEEeeCCcccCEEEEE
Confidence 467777777778889999999999999999999999999988876655433321 1124589999999999999999
Q ss_pred EEEeCCcceEEEEEEEEeeeecCCc
Q psy16652 352 KAANKYGSAQKEIELFDRETQTGDE 376 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~~~~~~~ 376 (384)
.|.|..|....++.|.|..++.+|.
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p~~P~ 108 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKESGPS 108 (110)
T ss_dssp EEECSSCEEEECCEEEEECCCCSSS
T ss_pred EEECCCCEEEEEEEEEEeCCCCCCC
Confidence 9999999999999999999887654
No 413
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-16 Score=109.48 Aligned_cols=101 Identities=25% Similarity=0.329 Sum_probs=82.4
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+... ......|.|.+++.+|.|.|+
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGNYT 82 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSCCE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC----CCcEEEEEECCCChhhCEEEE
Confidence 356666666777889999999999999999999999999998875 344444321 112347999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeeeecCCc
Q psy16652 351 CKAANKYGSAQKEIELFDRETQTGDE 376 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~~~~~~ 376 (384)
|.|.|..|.....+.|.|..++..|.
T Consensus 83 C~a~N~~g~~~~~~~l~V~~~~~~P~ 108 (110)
T 2dm2_A 83 IMAANPQGRISCTGRLMVQAVNSGPS 108 (110)
T ss_dssp EEEECTTCCEEECCCEEEECCSCCSS
T ss_pred EEEEECCCeEEEEEEEEEECCCCCCC
Confidence 99999999999999999998877654
No 414
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=107.05 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=77.1
Q ss_pred EEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 270 VEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 270 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+........ .....|.|.+++.+|+|.|
T Consensus 8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y 79 (99)
T 2yr3_A 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE--------AGVAELHIQDALPEDHGTY 79 (99)
T ss_dssp CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE--------TTEEEEEECSCCTTCCBCE
T ss_pred cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee--------CCeEEEEECCCChhhCEEE
Confidence 45678887777788899999999999999999999999999988865443211 1356799999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEe
Q psy16652 350 ACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 350 ~C~a~n~~g~~~~~~~l~v~ 369 (384)
+|.|.|..|....++.|.|+
T Consensus 80 ~C~a~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 80 TCLAENALGQVSCSAWVTVH 99 (99)
T ss_dssp EEEEECSSCEEEEECCEEEC
T ss_pred EEEEEECCCeEEEEEEEEEC
Confidence 99999999999988888773
No 415
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.62 E-value=2.1e-15 Score=124.80 Aligned_cols=175 Identities=19% Similarity=0.302 Sum_probs=107.2
Q ss_pred EEeecCceEEEEEEeccc--CCCeEEEEeCCCcccc-------------------cCceeE------eccEEEEcCCCCC
Q psy16652 193 VIVSEGQTVYLYCYANGF--PAPTISWRRDNSAALS-------------------TGGSIY------RGNILKIPNITKT 245 (384)
Q Consensus 193 ~~~~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~-------------------~~~~~~------~~~~l~i~~~~~~ 245 (384)
..+.+|++++|.|.+.+. ....+.|++....... ..+... ....|.|.+++.+
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 112 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE 112 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence 457899999999998653 2457999974321100 011111 1125999999999
Q ss_pred CCeEEEEEEEeCCC---------C-ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEec-cC-CCeEEEEE
Q psy16652 246 DRGTYYCVAQNGVG---------R-GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEA-YP-PPAIVWIK 309 (384)
Q Consensus 246 d~G~Y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~ 309 (384)
|+|.|.|.+.+..+ . .......|.|. .+|.+....+...+..|+.++|.|.+.+ +| ++.+.|
T Consensus 113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-- 190 (256)
T 3sob_H 113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 190 (256)
T ss_dssp GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence 99999999986431 0 11222345554 3555654444445678999999999987 45 347999
Q ss_pred CCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 310 DGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
++..+....... ......+.....+.|.|.....+| |.|+|.|.|..+.......|.+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~~ 251 (256)
T 3sob_H 191 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKS 251 (256)
T ss_dssp GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC-
T ss_pred CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecccC
Confidence 554443211100 011111122234578899998899 999999999998877777776554
No 416
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.7e-14 Score=123.46 Aligned_cols=180 Identities=19% Similarity=0.316 Sum_probs=109.9
Q ss_pred eeCcceeeeccCcEEEEEEeecCC--------------CccEEEEEeCCCCCCcccceeccCce----eeeCCceEEee-
Q psy16652 77 YISQEQIKDIAQTADLKCSVQYAD--------------DYPVIWMKMDTAKKMEPLPISMSGSL----IIHDSRFQLTT- 137 (384)
Q Consensus 77 ~~~~~~~v~~g~~v~l~C~~~~~~--------------~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~- 137 (384)
.++..+.+.+|++++|.|.....+ ...+.|++...... ..+.+...+.. ....++..+..
T Consensus 163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~-~~vliY~~g~~~q~~~~~~g~~~f~~~ 241 (401)
T 3f8u_B 163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG-HLLLAATPGLNGQMPAAQEGAVAFAAW 241 (401)
T ss_dssp ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEE-EEEEEECTTSCCCCCCCCTTCEEEEEE
T ss_pred CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCC-cEEEEEeCCCccccccccCCeEEEEee
Confidence 345567789999999999986432 35699999654311 12222222211 11122222211
Q ss_pred --C----CCCceEEEEEeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCc-eEEEEEEecc-
Q psy16652 138 --D----PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ-TVYLYCYANG- 209 (384)
Q Consensus 138 --~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~- 209 (384)
+ ...++.+|.|.+++.+|+|.|+|.+.+.. +.....+.|.|..+|.+.........+..|+ .+.|.|.+.+
T Consensus 242 ~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf 320 (401)
T 3f8u_B 242 DDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPY-LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF 320 (401)
T ss_dssp SCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred cccccccccCCcEEEEECcCCHhhCceEEEEEEecc-cceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence 1 12467899999999999999999997543 3455677888888776653322211134676 8999999987
Q ss_pred cCC--CeEEEE-eCCC---cccc------------cCceeEeccEEEEcCCCC-CCCeEEEEEEEeCC
Q psy16652 210 FPA--PTISWR-RDNS---AALS------------TGGSIYRGNILKIPNITK-TDRGTYYCVAQNGV 258 (384)
Q Consensus 210 ~~~--~~v~W~-~~~~---~~~~------------~~~~~~~~~~l~i~~~~~-~d~G~Y~C~~~~~~ 258 (384)
+|. +++.|. +++. .... .++...-.+.|.+...+. ++.+.|+|.+.|..
T Consensus 321 yP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 321 YPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp BSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred cCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 565 689995 7652 1111 111122234566666543 34459999999965
No 417
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=107.65 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=78.2
Q ss_pred EEecCeEEec---CCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 270 VEFAPVITIN---RPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 270 v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
+..+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|+++|..+. ..++.+.. ......|.|.+++.+|+
T Consensus 18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-----~~~~~~L~i~~~~~~D~ 91 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-----SDFDTVFFVRQAARSDS 91 (118)
T ss_dssp CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-----CSSEEEEEESSCCTTTC
T ss_pred eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-----CCCeEEEEECCCChhcC
Confidence 3446766543 345678889999999999999999999999999986 34444331 11345699999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|+|.|.|..|.....+.|.|.++|
T Consensus 92 G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 92 GEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEEEEEECSSCEECCEEEEEEECCC
T ss_pred EEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 99999999999999999999998765
No 418
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.60 E-value=1.7e-14 Score=115.09 Aligned_cols=161 Identities=17% Similarity=0.254 Sum_probs=98.5
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCC--ccc----------ccCceeEe-------ccEEEEcCCCCCCCeEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS--AAL----------STGGSIYR-------GNILKIPNITKTDRGTY 250 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~--~~~----------~~~~~~~~-------~~~l~i~~~~~~d~G~Y 250 (384)
+..+.+.+|+++.|.|.+.+.+ +.+.|++... ... ...+.... ...|.|.+++.+|+|.|
T Consensus 8 p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 86 (207)
T 1ypz_E 8 PSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTY 86 (207)
T ss_dssp CSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEE
T ss_pred CCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEE
Confidence 4567789999999999997643 4899998542 111 11122211 23799999999999999
Q ss_pred EEEEEeCCC---------C-ceeeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCEEecCCC
Q psy16652 251 YCVAQNGVG---------R-GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGVQIMNNQ 318 (384)
Q Consensus 251 ~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~ 318 (384)
.|.+.+..+ . .......|.|...+... .++...+.. ..+.|.|.+.+. |. +.+.|+++ ..+....
T Consensus 87 ~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~-~~P~v~~~~-~~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~ 163 (207)
T 1ypz_E 87 FCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPP-AKPSVFIMK-NGTNVACLVKDFYPKEVTISLRSS-KKIVEFD 163 (207)
T ss_dssp EEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCC-CCCEEEEEE-ETTEEEEEEEEESSSCCEEEEECS-SEEEECC
T ss_pred EEEEecCCcccccccccceeeecCccEEEEccCCCCC-CCCeEEEeC-CCCeEEEEEeeEeCCCeEEEEecC-CcccCCc
Confidence 999998642 1 01123466665421110 111111112 236899999875 44 69999999 6665332
Q ss_pred ceeeeeeeccCccccceEEEeecCC-CCCeEEEEEEEeCCcceE
Q psy16652 319 HYSVSHFATSDEFSDTSLRVITIER-RQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~ 361 (384)
. .... ..++.+.+..... +|.|.|+|.|.|..+..+
T Consensus 164 ~-~~~~------~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~~ 200 (207)
T 1ypz_E 164 P-AIVI------SPSGKYSAVKLGQYGDSNSVTCSVQHNSETVH 200 (207)
T ss_dssp C-EEEE------CTTSSEEEEECEEESSTTTCEEEEEETTEEEE
T ss_pred c-ceEE------cCCCcEEEEEeecccCCCcEEEEEEECCccEe
Confidence 1 1111 0233444444443 678999999999987543
No 419
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.60 E-value=3.4e-15 Score=123.71 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=105.4
Q ss_pred eEEeecCceEEEEEEecccC--CCeEEEEeCCCcccc------------------cCceeE------eccEEEEcCCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALS------------------TGGSIY------RGNILKIPNITKT 245 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~~~~~------------------~~~~~~------~~~~l~i~~~~~~ 245 (384)
.+.+.+|++++|.|.+.+.. ...+.|++....... ..+... ....|.|.+++.+
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 88 (263)
T 3iu4_H 9 PGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTD 88 (263)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGG
T ss_pred CEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHH
Confidence 35588999999999986533 457999974321100 011111 1125999999999
Q ss_pred CCeEEEEEEEeCCC-------CceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEEEecc-CC-CeEEEEECCE
Q psy16652 246 DRGTYYCVAQNGVG-------RGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAY-PP-PAIVWIKDGV 312 (384)
Q Consensus 246 d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~ 312 (384)
|+|.|.|.+.+..+ ........|.|. .+|.+....+...+..|+.++|.|.+.+. |. +.+.| ++.
T Consensus 89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~ 166 (263)
T 3iu4_H 89 DTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSG 166 (263)
T ss_dssp GCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred HCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCc
Confidence 99999999987531 011122345553 45666544444455688999999999884 43 57999 554
Q ss_pred EecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy16652 313 QIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368 (384)
Q Consensus 313 ~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 368 (384)
.+....... ......+.....+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 222 (263)
T 3iu4_H 167 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 222 (263)
T ss_dssp TBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECCC
T ss_pred ccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEcC
Confidence 432211100 011111122223578888888888 9999999999987766666554
No 420
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=111.11 Aligned_cols=162 Identities=9% Similarity=-0.001 Sum_probs=109.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+.+.|+...|.+|+++.|+|.+.-..+..+.|...-.. ..+ .. ......+.|.+++
T Consensus 4 ~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~------------------~~~--~~--g~~~~~~~ls~vs- 60 (196)
T 3bn3_B 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRR------------------NGT--QR--GLRWLARQLVDIR- 60 (196)
T ss_dssp CEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEE------------------EEE--EE--ETTEEEEEEEEEC-
T ss_pred EEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCC------------------eeE--cc--ccCceEEEEEEEc-
Confidence 566778888899999999999986443436777642110 000 00 1223358899998
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCCe--EEEEeCCCcccccCce
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAPT--ISWRRDNSAALSTGGS 230 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~ 230 (384)
+|.+.|.|.+. ..+...+..+.|.|+.+|......+....+.+|+.++|.|.+.+ +|..+ +.|++++..+......
T Consensus 61 ~d~~~~~C~~~-c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~ 139 (196)
T 3bn3_B 61 EPETQPVCFFR-CARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFA 139 (196)
T ss_dssp SSEECCEEEEE-ETTEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECT
T ss_pred cCCCceEEEEE-CCCCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccc
Confidence 88888999975 44567788899999988766554444334789999999999976 55544 8999998765422200
Q ss_pred ------eEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 231 ------IYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 231 ------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
......+.+.....+|...|+|.|.+..+
T Consensus 140 ~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~ 174 (196)
T 3bn3_B 140 GEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174 (196)
T ss_dssp TSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred cccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence 00113455655555555599999998765
No 421
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.60 E-value=1.2e-14 Score=100.79 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=75.4
Q ss_pred ecCCCcccccCCcEEEEEEEecc-CCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeC
Q psy16652 278 INRPRQGQALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356 (384)
Q Consensus 278 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 356 (384)
..+....+.+|+.+.|.|.+.|. |.+.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.|.|.
T Consensus 6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (97)
T 2bk8_A 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-----DGVAILYVKDITKLDDGTYRCKVVND 80 (97)
T ss_dssp CCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-----CCeEEEEEecCChhhCeEEEEEEECC
Confidence 34556778899999999999997 8999999999999987777665431 12458999999999999999999999
Q ss_pred CcceEEEEEEEEeee
Q psy16652 357 YGSAQKEIELFDRET 371 (384)
Q Consensus 357 ~g~~~~~~~l~v~~~ 371 (384)
.|....++.|.|.+.
T Consensus 81 ~g~~~~~~~l~V~~~ 95 (97)
T 2bk8_A 81 YGEDSSYAELFVKGV 95 (97)
T ss_dssp SCEEEEEEEEEETTT
T ss_pred CCeEeEEEEEEEEec
Confidence 999999999998753
No 422
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.60 E-value=5.9e-15 Score=106.35 Aligned_cols=102 Identities=22% Similarity=0.356 Sum_probs=77.3
Q ss_pred EEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCC
Q psy16652 267 AVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 267 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 346 (384)
.|.|.++|.+...... ...+...|.|.+.|.|.|.+.|+++|..+..+.+......... ....+.|.|.+++.+|+
T Consensus 2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~ 77 (118)
T 1wwc_A 2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG-EISEGCLLFNKPTHYNN 77 (118)
T ss_dssp --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS-SEEEEEEEEESCCGGGC
T ss_pred EEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccC-ccccEEEEECCCChhcC
Confidence 4567778876443221 2236678999999999999999999999987776554432221 12456899999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|.|+|.|.|..|...+++.|.|...|
T Consensus 78 G~Y~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 78 GNYTLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp EEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred EEEEEEEECCCCeEeeEEEEEEccCC
Confidence 99999999999999999998877665
No 423
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.59 E-value=1.1e-14 Score=101.68 Aligned_cols=93 Identities=18% Similarity=0.348 Sum_probs=75.9
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCC--CceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN--QHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... .++.+.. . ....+|.|.+++.+|+|.|+
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~v~~~D~G~Y~ 79 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN--T---DDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE--C---SSEEEEEESSCCGGGCEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEe--c---CCEEEEEEeecCcccCEEEE
Confidence 455655566677889999999999999999999999999988643 3443332 1 12467999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEee
Q psy16652 351 CKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~ 370 (384)
|.|.|..|.....+.|.|+.
T Consensus 80 C~a~n~~g~~~~~~~l~V~~ 99 (100)
T 3irg_A 80 LSLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999998864
No 424
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.59 E-value=5.2e-15 Score=102.08 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=73.1
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+.+|+.+.|.|.+.|.| +.+.|+++|..+....++.+ ....|.|.+++.+|+|.|+|.
T Consensus 9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~ 78 (95)
T 2ckn_A 9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI---------TGEEVEVRDSIPADSGLYACV 78 (95)
T ss_dssp SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEE---------CSSEEEESSCCGGGSEEEEEE
T ss_pred CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEE---------eCCEEEECCCChHHCEEEEEE
Confidence 34554455667788999999999999987 79999999998877666543 256899999999999999999
Q ss_pred EEeCCcceEEEEEEEEe
Q psy16652 353 AANKYGSAQKEIELFDR 369 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~ 369 (384)
|.|..|.....+.|.|.
T Consensus 79 a~n~~g~~~~~~~l~V~ 95 (95)
T 2ckn_A 79 TSSPSGSDTTYFSVNVS 95 (95)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred eccCCCcEEEEEEEEEC
Confidence 99999999999888773
No 425
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.59 E-value=1.4e-13 Score=105.76 Aligned_cols=158 Identities=15% Similarity=0.277 Sum_probs=106.0
Q ss_pred CceEEeecCceEEEEEEecccCCC-eEEEEeCCCcccc-cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIA 267 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 267 (384)
++...+.+|+++.|+|.+.. +.+ .+.|...-..... ..+ .....|.|.+++. | |.|.|.+... +....+.+.
T Consensus 6 P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~--~~~~~l~l~~vs~-~-g~y~C~~~c~-~~~~~~~~~ 79 (185)
T 1iam_A 6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG--NNRKVYELSNVQE-D-SQPMCYSNCP-DGQSTAKTF 79 (185)
T ss_dssp SSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS--SSEEEEEEEEECS-C-BCCEEEEECS-SCEEEEECE
T ss_pred CCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC--CceeEEEEEecCc-C-CEEEEEEECC-CCceEEEEE
Confidence 44567899999999999964 444 4777642111100 100 1224688999974 3 9999998654 334578888
Q ss_pred EEEEecCe-EEecCCCcccccCCcEEEEEEEec-cCCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCC
Q psy16652 268 VEVEFAPV-ITINRPRQGQALQYDAILECHVEA-YPPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343 (384)
Q Consensus 268 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 343 (384)
|.|..+|. +.+.+....+.+|+.++|.|.+.| .|.+ +|.|+++++++..... . ....+.+|++...+.
T Consensus 80 l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~--~------~~~~~~tl~~~~~re 151 (185)
T 1iam_A 80 LTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--V------GEPAEVTTTVLVRRD 151 (185)
T ss_dssp EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--C------TTTEEEEEEEECCSS
T ss_pred EEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC--C------CccccEEEEEeceec
Confidence 99988775 445555566899999999999988 4544 4899999998864320 0 011234566665555
Q ss_pred CCCeEEEEEEEeCCcceE
Q psy16652 344 RQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 344 ~d~G~Y~C~a~n~~g~~~ 361 (384)
+|...|+|.|.|..+...
T Consensus 152 D~g~~~sC~A~~~l~~~g 169 (185)
T 1iam_A 152 HHGAQFSCRTELDLRPQG 169 (185)
T ss_dssp CSSCEEEEEEEEECGGGT
T ss_pred cCCCeEEEEEEecCcccC
Confidence 555599999999988443
No 426
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.58 E-value=1.1e-14 Score=104.01 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=75.8
Q ss_pred CeEEecCCCcccccCCcEEEEEEEecc---CCCeEEEEECCEE-ec--CCCceeeeee-eccCccccceEEEeecCCCCC
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGVQ-IM--NNQHYSVSHF-ATSDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~-~~--~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~ 346 (384)
|.+...+....+.+|+.++|.|.+.+. |.|.|.|++++.. +. ...++.+... ..........|.|.+++.+|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 345556777889999999999999874 8899999997521 11 1334444321 111122357899999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEee-eecCC
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRE-TQTGD 375 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~-~~~~~ 375 (384)
|.|+|.|.|..|..+.+++|.|.+ ++..|
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p 117 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence 999999999999999999999999 54333
No 427
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.58 E-value=2.2e-15 Score=106.15 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=79.4
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+....++.+... .....|.|.+++.+|+|.|+|
T Consensus 13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C 87 (106)
T 1nct_A 13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTT-----KYKSTFEISSVQASDEGNYSV 87 (106)
T ss_dssp CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEEC-----SSEEEEEECCCCSSCCSEEEE
T ss_pred CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEECcCCchhCEEEEE
Confidence 356677777788899999999999999999999999999998877776655431 135689999999999999999
Q ss_pred EEEeCCcceEEEEEEEEe
Q psy16652 352 KAANKYGSAQKEIELFDR 369 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~ 369 (384)
.|.|..|....++.|.|.
T Consensus 88 ~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 88 VVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CCBCSSCBCCEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999999999999875
No 428
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.58 E-value=2.4e-16 Score=114.49 Aligned_cols=109 Identities=24% Similarity=0.403 Sum_probs=87.6
Q ss_pred eeEEEEEEEecCeEEecCCCcccccCCcEEEEEEEeccCCCe-EEEEECCEEecC--CCceeeeeeeccCccccceEEEe
Q psy16652 263 KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMN--NQHYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 263 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~ 339 (384)
...+.|.|..+|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+.. ..++.+...... ....+.|.|.
T Consensus 4 ~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~I~ 81 (122)
T 2cry_A 4 GSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTIS 81 (122)
T ss_dssp SCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECT
T ss_pred ceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCC-CceEEEEEEc
Confidence 3456778888999887 7778899999999999999999997 999999998875 345544322111 1124589999
Q ss_pred ecCCCCC-eEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 340 TIERRQF-GQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 340 ~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+++.+|. |.|+|.|.|..|.....+.|.|.+++.
T Consensus 82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 116 (122)
T 2cry_A 82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116 (122)
T ss_dssp TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred CCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence 9999998 999999999999999999999987644
No 429
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.58 E-value=1.8e-16 Score=127.45 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=102.3
Q ss_pred CCe-eeeCcceeeeccCcEEEEEEeecCCC---ccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 73 PTI-SYISQEQIKDIAQTADLKCSVQYADD---YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 73 p~~-~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
|.+ ...|....+.+|++++|.|.+.+.++ ..+.| ++...... .. ........++|. ....|.|
T Consensus 4 p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~---~~-~~~~~~~~g~~~-------~~~~L~I 70 (214)
T 1ow0_A 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSA---VQ-GPPERDLCGCYS-------VSSVLPG 70 (214)
T ss_dssp CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCC---EE-CCCCCCSTTCCC-------EEEECTT
T ss_pred CEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCc---cc-CCceECCCCcEE-------EEEEEEE
Confidence 444 34466677899999999999987643 68999 33322110 00 000001112221 3457999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEE---EecCCccccCCCceEEeecCceEEEEEEeccc-CC-CeEEEEeCCCc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELI---VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PA-PTISWRRDNSA 223 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~---v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~ 223 (384)
.+++.+|+|.|+|.+.+.... ......+. +..+|.+....+....+..|+.+.|.|.+.|. |. +.+.|++++..
T Consensus 71 ~~~~~~D~g~Y~C~~~~~~~~-~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~ 149 (214)
T 1ow0_A 71 CAEPWNHGKTFTCTAAYPESK-TPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE 149 (214)
T ss_dssp THHHHHHTCEEEEEECCSSCS-SCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE
T ss_pred eHHHcCCCCeEEEEEecCCCC-CceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEE
Confidence 999999999999999755432 11112222 22344433222222224578999999999884 54 49999999876
Q ss_pred ccccCc-----eeE---ec------cEEEEcCCCCCCCeEEEEEEEeCCCC
Q psy16652 224 ALSTGG-----SIY---RG------NILKIPNITKTDRGTYYCVAQNGVGR 260 (384)
Q Consensus 224 ~~~~~~-----~~~---~~------~~l~i~~~~~~d~G~Y~C~~~~~~~~ 260 (384)
+..... ... .+ ..|.+.....++.|.|+|.|.|....
T Consensus 150 l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 150 LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 543310 111 12 23444444445689999999996543
No 430
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=106.33 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=78.8
Q ss_pred ecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecC-CCceeeeeeeccCccccceEEEeecCCCCCeEEE
Q psy16652 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN-NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350 (384)
Q Consensus 272 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 350 (384)
.+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ..++... .+.+|.|.+++.+|+|.|+
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~--------~~~~L~i~~v~~~D~G~Y~ 78 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL--------ENGVLQIRYAKLGDTGRYT 78 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE--------ETTEEEEESCCGGGCCCEE
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc--------cCCEEEEccCCcCCCEEEE
Confidence 356666666777889999999999999999999999999988864 3344332 3568999999999999999
Q ss_pred EEEEeCCcceEEEEEEEEeeeec
Q psy16652 351 CKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 351 C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
|.|.|..|.....+.|.|.+++.
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~~~ 101 (118)
T 2eo9_A 79 CIASTPSGEATWSAYIEVQEFGV 101 (118)
T ss_dssp EEEECSSCEEEEECCEEEECCSC
T ss_pred EEEEcCCCcEEEEEEEEEEeCCC
Confidence 99999999999999999987753
No 431
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=102.75 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=74.9
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+.+|+.+.|.|.+ .|.+.+.|+++|..+..+.++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 79 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKG-----RIHKLVIANALTEDEGDYVFA 79 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECS-----SEEEEEESSCCGGGCSEEEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeC-----CEEEEEECCCChhhCEEEEEE
Confidence 4555556667788999999999999 788999999999999888877765311 245799999999999999999
Q ss_pred EEeCCcceEEEEEEEEeeeec
Q psy16652 353 AANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~~~~ 373 (384)
|.|. ..+.+..|.|.++|.
T Consensus 80 a~N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 80 PDAY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp ESSS--CCCEEEEEEEECCSC
T ss_pred EcCC--CeeEEEEEEEeCCCC
Confidence 9998 556777888887754
No 432
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=124.07 Aligned_cols=164 Identities=16% Similarity=0.198 Sum_probs=103.4
Q ss_pred eeccCcEEEEEEeecC---C-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 84 KDIAQTADLKCSVQYA---D-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 84 v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
+..|++++|.|.+.+. + ...|.|++++....... ........++.+.. ...|.|..++.+|+|.|
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~----~~~~~~~~~~~~~~-------~s~L~I~~~~~~D~g~Y 248 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQ----TQPREEQFNSTFRS-------VSELPIMHQDWLNGKEF 248 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcc----cCCCCcccCCcEEE-------EEEEEechHhccCCCEE
Confidence 7899999999999875 3 24799999885421110 00000112223322 33699999999999999
Q ss_pred EEEEEEccCcc-eeeeEEE--EEecCCccccCCCceEEeecCceEEEEEEeccc-C-CCeEEEEeCCCccccc-------
Q psy16652 160 KCEVIISLNNK-VSAEVEL--IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-P-APTISWRRDNSAALST------- 227 (384)
Q Consensus 160 ~C~~~~~~~~~-~~~~~~l--~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~------- 227 (384)
+|.+.+..... ....+.+ .+..+|.+.... .......|+.++|.|.+.+. | ..+|.|++++..+...
T Consensus 249 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~-~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~ 327 (376)
T 2aty_A 249 KCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIP-PPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIM 327 (376)
T ss_pred EEEEecCCCCCceEEEEcCCCCCCcCCeEEeeC-CCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceE
Confidence 99998654422 2222222 233445444322 22223458899999999884 3 3589999998765321
Q ss_pred --CceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 228 --GGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 228 --~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
++.......|.|.....+|.|.|+|.|.|...
T Consensus 328 ~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 328 NTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred CCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 11122234688888878889999999998654
No 433
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.57 E-value=7.1e-15 Score=102.11 Aligned_cols=96 Identities=19% Similarity=0.283 Sum_probs=75.0
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..... ....++.+.. .....+|.|.
T Consensus 3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~------------~~~~~~~~~~--~~~~~~L~I~ 68 (100)
T 3knb_A 3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHS------------QEQGRFHIEN--TDDLTTLIIM 68 (100)
T ss_dssp CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCT------------TGGGTEEEEE--CSSEEEEEES
T ss_pred CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeee------------eccceeeeec--ccceEEEEEc
Confidence 3567888888888999999999999999999999999998764211 1223555555 4556789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus 69 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~ 98 (100)
T 3knb_A 69 DVQKQDGGLYTLSLGNEF-GSDSATVNIHIR 98 (100)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred CCCccCCEEEEEEEEECC-CEEEEEEEEEEE
Confidence 999999999999998654 456677777775
No 434
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.55 E-value=3.1e-14 Score=97.30 Aligned_cols=88 Identities=14% Similarity=0.074 Sum_probs=70.3
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+.+..+.+|+.+.|.|.+.+ +++.+.|+++|..+..+.++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g-----~~~~L~I~~v~~~D~G~Y~C~ 78 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDG-----KKHILILHNCQLGMTGEVSFQ 78 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEET-----TEEEEEECSCCGGGCEEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEEC-----CEEEEEECCCChhhCEEEEEE
Confidence 456666677788999999999999987 55789999999999887777655311 245799999999999999999
Q ss_pred EEeCCcceEEEEEEEEee
Q psy16652 353 AANKYGSAQKEIELFDRE 370 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~ 370 (384)
|.|. ..+..|.|.+
T Consensus 79 a~n~----~~sa~L~V~~ 92 (93)
T 1waa_A 79 AANT----KSAANLKVKE 92 (93)
T ss_dssp ETTE----EEEEEEEEEC
T ss_pred ECCC----cEEEEEEEEc
Confidence 9874 3566777764
No 435
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.55 E-value=4.3e-14 Score=99.98 Aligned_cols=98 Identities=13% Similarity=0.173 Sum_probs=72.6
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCC---CeEEEEECCEEecC---CCceeeeeeecc-CccccceEEEeecCCCC
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPP---PAIVWIKDGVQIMN---NQHYSVSHFATS-DEFSDTSLRVITIERRQ 345 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d 345 (384)
.|.+...+....+.+|+.++|.|.+.|.|. |.+.|++++..... ..++.+...... .......|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 355555667778899999999999999998 89999998732221 123333221111 11235689999999999
Q ss_pred CeEEEEEEEeCCcceEEEEEEEEee
Q psy16652 346 FGQYACKAANKYGSAQKEIELFDRE 370 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~~~~~~~l~v~~ 370 (384)
+|.|+|.|.|..|..+.++.|.|.+
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVHE 108 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CEEEEEEEecCCCceEEEEEEEEeC
Confidence 9999999999999999999998863
No 436
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=96.34 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=64.9
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
...+.+|+.+.|.|.+.+ |.|.+.|++||.++..+.++.+.... ....|.|.+++.+|+|.|+|.|.| ..
T Consensus 5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~n----~~ 74 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAG-----ARQVLRVQGARSGDAGEYLCDAPQ----DS 74 (84)
T ss_dssp CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECS-----SCEEEEESSCSSTTCEEEEEECTT----TC
T ss_pred EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecC-----CeEEEEecCCCCcccEEEEEEECC----EE
Confidence 456788999999999976 88999999999999988877665311 345799999999999999999855 45
Q ss_pred EEEEEEEeee
Q psy16652 362 KEIELFDRET 371 (384)
Q Consensus 362 ~~~~l~v~~~ 371 (384)
.++.|.|.+|
T Consensus 75 ~~a~l~V~eP 84 (84)
T 2lu7_A 75 RIFLVSVEEP 84 (84)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEECC
Confidence 6677877654
No 437
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.55 E-value=1.6e-13 Score=117.47 Aligned_cols=175 Identities=18% Similarity=0.270 Sum_probs=110.2
Q ss_pred ceEEeecCceEEEEEEecccC--------------CCeEEEEeCCCc----c------------cccCc-----------
Q psy16652 191 RSVIVSEGQTVYLYCYANGFP--------------APTISWRRDNSA----A------------LSTGG----------- 229 (384)
Q Consensus 191 ~~~~~~~g~~~~l~C~~~~~~--------------~~~v~W~~~~~~----~------------~~~~~----------- 229 (384)
..+.+..|++++|.|.....+ ...+.|++.... + ....+
T Consensus 166 ~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~~~ 245 (401)
T 3f8u_B 166 PAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDE 245 (401)
T ss_dssp SSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESCCC
T ss_pred CcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecccc
Confidence 346688999999999875322 246999863210 0 00001
Q ss_pred ---eeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEEEEecCeEEecCCCcc-cccCC-cEEEEEEEec-cCC-
Q psy16652 230 ---SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG-QALQY-DAILECHVEA-YPP- 302 (384)
Q Consensus 230 ---~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~-~p~- 302 (384)
....+..|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.+.+.... +..|+ .++|.|.+.+ +|.
T Consensus 246 ~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~ 324 (401)
T 3f8u_B 246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSG 324 (401)
T ss_dssp SSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSST
T ss_pred cccccCCcEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCC
Confidence 11234589999999999999999999876553 5678888999998887655444 45675 7999999988 465
Q ss_pred -CeEEEE-ECCE---EecCCCce---eeeeeeccCccccceEEEeecCCC-CCeEEEEEEEeCC---cceEEEEEE
Q psy16652 303 -PAIVWI-KDGV---QIMNNQHY---SVSHFATSDEFSDTSLRVITIERR-QFGQYACKAANKY---GSAQKEIEL 366 (384)
Q Consensus 303 -~~v~W~-~~~~---~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~---g~~~~~~~l 366 (384)
+.+.|. +++. .+...... ......++.....+.|.+...+.+ +.+.|+|.+.|.. |....+++|
T Consensus 325 ~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~sL~~g~rs~sVtL 400 (401)
T 3f8u_B 325 GLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTL 400 (401)
T ss_dssp TCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTTSCTTCEEEEEEC
T ss_pred CcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCCCCCCcceEEEEe
Confidence 689995 7652 11111100 111111122222344555554433 4459999999986 555555554
No 438
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.55 E-value=2.1e-14 Score=100.11 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=67.8
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
...+.+|+.+.|.|.+.|.|.+.+.|+++|..+....+....... .....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 17 ~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~ 92 (100)
T 3caf_A 17 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----NQHWSLIMESVVPSDKGNYTCVVENEYGSIN 92 (100)
T ss_dssp EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----GGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred EEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe----cCeEEEEEccCCcCCCEEEEEEEEeCCCEEE
Confidence 355778999999999999999999999999988765432211111 1346899999999999999999999999999
Q ss_pred EEEEEEE
Q psy16652 362 KEIELFD 368 (384)
Q Consensus 362 ~~~~l~v 368 (384)
.++.|.|
T Consensus 93 ~~~~l~V 99 (100)
T 3caf_A 93 HTYHLDV 99 (100)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888876
No 439
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.55 E-value=1.6e-13 Score=98.17 Aligned_cols=100 Identities=19% Similarity=0.238 Sum_probs=79.8
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.|...+....+.+|++++|.|.+.+.+.+.+.|++++... ....++.+.. ......|.|.
T Consensus 5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~--------------~~~~~~~~~~--~~~~~~L~I~ 68 (114)
T 2cqv_A 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQI--------------QESEHMKVEN--SENGSKLTIL 68 (114)
T ss_dssp CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBC--------------CCSSSEEEEE--CSSEEEEEET
T ss_pred CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEEC--------------cCCCCEEEEE--cCCEEEEEEC
Confidence 45788888888889999999999999999888999999987652 2234555554 3446789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCccc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~ 186 (384)
+++.+|+|.|+|.+.|.. +..+..+.|.|..+|..+
T Consensus 69 ~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 69 AARQEHCGCYTLLVENKL-GSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp TCCTTTCEEEEEEEECSS-CEEECCEEEEEECSCSCC
T ss_pred CCChhcCEEEEEEEEECC-CcEEEEEEEEEECCCCCC
Confidence 999999999999998654 456778889888766544
No 440
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.54 E-value=5.3e-14 Score=116.92 Aligned_cols=175 Identities=18% Similarity=0.306 Sum_probs=107.6
Q ss_pred eEEeecCceEEEEEEecc--cCCCeEEEEeCCCccc--------c-----------cCceeE------eccEEEEcCCCC
Q psy16652 192 SVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAAL--------S-----------TGGSIY------RGNILKIPNITK 244 (384)
Q Consensus 192 ~~~~~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~--------~-----------~~~~~~------~~~~l~i~~~~~ 244 (384)
...+.+|++++|.|.+.+ .....+.|++...... . ..+... ....|.|.+++.
T Consensus 32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (267)
T 3u1s_H 32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA 111 (267)
T ss_dssp CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence 356889999999999864 3346899998432110 0 011111 123599999999
Q ss_pred CCCeEEEEEEEe-------CC------------C-C----ceeeEEEEEEE----ecCeEEecCCCcccccCCcEEEEEE
Q psy16652 245 TDRGTYYCVAQN-------GV------------G-R----GMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECH 296 (384)
Q Consensus 245 ~d~G~Y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~ 296 (384)
+|+|.|.|.+.+ .. . . .......|.|. .+|.+...++......|+.++|.|.
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~ 191 (267)
T 3u1s_H 112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 191 (267)
T ss_dssp GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEE
T ss_pred hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEE
Confidence 999999999962 00 0 0 01112345553 3556654444444567899999999
Q ss_pred Eec-cC-CCeEEEEECCEEecCCCcee-eeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 297 VEA-YP-PPAIVWIKDGVQIMNNQHYS-VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 297 ~~~-~p-~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
+.+ +| ++.+.| ++..+....... ......+.....+.|.|.....+| |.|+|.|.|..+.......+.+.
T Consensus 192 ~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~~ 264 (267)
T 3u1s_H 192 VKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 264 (267)
T ss_dssp EEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC-
T ss_pred EeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEEEcccC
Confidence 987 45 458999 665543221110 011111222234568898888888 99999999998776666555543
No 441
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-14 Score=98.35 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=75.9
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.|...+.+..+.+|+++.|.|.+ .+.+.+.|++++... ..+.++.+.. ......|.|
T Consensus 4 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l--------------~~~~r~~i~~--~~~~~~L~I 65 (100)
T 2yuz_A 4 GSSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPV--------------QESDRLKVVQ--KGRIHKLVI 65 (100)
T ss_dssp SSCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEEC--------------CCCSSEEEEE--CSSEEEEEE
T ss_pred CCCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEEC--------------CCCCcEEEEE--eCCEEEEEE
Confidence 3457788888889999999999999999 677899999987642 2346666665 455678999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
.+++.+|+|.|+|.+.|. ..+....|.|..+|.
T Consensus 66 ~~v~~~D~G~Y~C~a~N~---~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 66 ANALTEDEGDYVFAPDAY---NVTLPAKVHVISGPS 98 (100)
T ss_dssp SSCCGGGCSEEEEEESSS---CCCEEEEEEEECCSC
T ss_pred CCCChhhCEEEEEEEcCC---CeeEEEEEEEeCCCC
Confidence 999999999999999754 456677888887764
No 442
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=99.74 Aligned_cols=84 Identities=18% Similarity=0.262 Sum_probs=71.9
Q ss_pred CcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceE
Q psy16652 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361 (384)
Q Consensus 282 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 361 (384)
...+.+|+.+.|.|.+.+.| |.+.|++++..+....++.+. ...|.|.+++.+|.|.|+|.|.|..|...
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 81 (99)
T 2cr3_A 12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPSGSDT 81 (99)
T ss_dssp ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCCceEE
Confidence 45678899999999999976 799999999888766654432 46899999999999999999999999999
Q ss_pred EEEEEEEeeeecCC
Q psy16652 362 KEIELFDRETQTGD 375 (384)
Q Consensus 362 ~~~~l~v~~~~~~~ 375 (384)
..+.|.|.+.++.+
T Consensus 82 ~~~~l~V~~~~~s~ 95 (99)
T 2cr3_A 82 TYFSVNVSDALPSG 95 (99)
T ss_dssp EEEEECBCSCCSCC
T ss_pred EEEEEEEecCCCCc
Confidence 99999998877654
No 443
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.53 E-value=5.6e-14 Score=96.01 Aligned_cols=85 Identities=20% Similarity=0.328 Sum_probs=69.2
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
++.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ...|.|.+++.+|+|.|+|.
T Consensus 3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~ 68 (91)
T 3bfo_A 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVDLEHQGTYWCH 68 (91)
T ss_dssp CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC--------------SSEEEESSCCGGGCEEEEEE
T ss_pred ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC--------------CCeEEECCCCHHhCEEEEEE
Confidence 3455566666778999999999999999999999999998875442 45799999999999999999
Q ss_pred EEeCCcceE-EEEEEEEeee
Q psy16652 353 AANKYGSAQ-KEIELFDRET 371 (384)
Q Consensus 353 a~n~~g~~~-~~~~l~v~~~ 371 (384)
|.|..|... ..+.|.|.+.
T Consensus 69 a~n~~g~~~s~~~~l~V~~~ 88 (91)
T 3bfo_A 69 VYNDRDSQDSKKVEIIIDEL 88 (91)
T ss_dssp EECSSCEEECCCEEEEEC--
T ss_pred EEcCCCCEEeeeEEEEEehh
Confidence 999999765 4577777543
No 444
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.53 E-value=1.4e-14 Score=106.63 Aligned_cols=85 Identities=15% Similarity=0.172 Sum_probs=68.1
Q ss_pred CCCcccccCCcEEEEEEEeccCCCeEEEEECC----------------------------EEe-cCCCceeeeeeeccCc
Q psy16652 280 RPRQGQALQYDAILECHVEAYPPPAIVWIKDG----------------------------VQI-MNNQHYSVSHFATSDE 330 (384)
Q Consensus 280 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~----------------------------~~~-~~~~~~~~~~~~~~~~ 330 (384)
+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+ ....++.+...
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~----- 99 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETT----- 99 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEE-----
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeC-----
Confidence 34567889999999999999999999999998 333 22334333210
Q ss_pred cccceEEEeecCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy16652 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDR 369 (384)
Q Consensus 331 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 369 (384)
...+.|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 100 ~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 123579999999999999999999999999999999885
No 445
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.53 E-value=4.5e-13 Score=106.38 Aligned_cols=177 Identities=17% Similarity=0.158 Sum_probs=112.1
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+....+.+|++|+|.|.+.+.....+.||+.........+............+||.+..+.....+.|.|.+++.
T Consensus 5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~ 84 (210)
T 2eys_A 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 84 (210)
T ss_dssp CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence 45666777889999999999999776556899999765432232322111111234789988876677889999999999
Q ss_pred CCCeeEEEEEEEcc--Cc--ceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEecccCCC-eEEEEeCCCcccc
Q psy16652 154 TDAGIYKCEVIISL--NN--KVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANGFPAP-TISWRRDNSAALS 226 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~--~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~ 226 (384)
+|+|.|.|.+.+.. .. .......|.|....... .+.+.+. ..+.++|.|.+.++.+. ++.+.+.
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v~~~~~------ 155 (210)
T 2eys_A 85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKD------ 155 (210)
T ss_dssp GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSC---CCEEEEECCCSSSSCEEEEEESCCTTCCCCCCSS------
T ss_pred ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCC---CCeEEecCCCCCCceEEEEcccccCCcEeccccC------
Confidence 99999999997421 11 12233567665322100 1111111 12378899999885443 4422111
Q ss_pred cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 227 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
..........|.+..+...+.|.|.|.+.+..+
T Consensus 156 ~~~~~t~~~~l~~~~~~~~~~~~~~w~~~~~~~ 188 (210)
T 2eys_A 156 SDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 188 (210)
T ss_dssp TTEEECCCEEEEETTTTEEEEEEEEEECSTTCC
T ss_pred cceEccCchhcchhcccccccchhhccCCCceE
Confidence 111112345788888888899999998877543
No 446
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=6.7e-14 Score=98.07 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred EEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC--ceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 276 ITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ--HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 276 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+.... ++.+... .....|.|.+++.+|+|.|+|.|
T Consensus 10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y~C~a 83 (103)
T 1x44_A 10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE-----GKKHILIIEGATKADAAEYSVMT 83 (103)
T ss_dssp CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEE-----TTEEEEEEEEECTTTCSEEEEEE
T ss_pred eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEc-----CCEEEEEECCCCcccCEEEEEEE
Confidence 445566677889999999999988 779999999999998776 4444421 12467999999999999999999
Q ss_pred EeCCcceEEEEEEEEeeeecCC
Q psy16652 354 ANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
.| ...++.|.|.++|.++
T Consensus 84 ~n----~~~~~~l~V~~~p~p~ 101 (103)
T 1x44_A 84 TG----GQSSAKLSVDLKSGPS 101 (103)
T ss_dssp TT----EEEEEEEEEECCCSCC
T ss_pred CC----CcEEEEEEEeCCCCCC
Confidence 88 4667888888877644
No 447
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=99.65 Aligned_cols=93 Identities=14% Similarity=0.236 Sum_probs=73.4
Q ss_pred cCeEEecCCC---cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEE
Q psy16652 273 APVITINRPR---QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349 (384)
Q Consensus 273 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 349 (384)
+|.+...+.. ..+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+... .....|.|.+++.+|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~-----~~~~~L~I~~~~~~D~G~Y 80 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD-----GRKHRLILPEAKVQDSGEF 80 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEE-----TTEEEEEESSCCTTTCEEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeC-----CCEEEEEECCCChhhCEEE
Confidence 4555555555 577899999999999999988 999999999987777655431 1346799999999999999
Q ss_pred EEEEEeCCcceEEEEEEEEeeeecCC
Q psy16652 350 ACKAANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 350 ~C~a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
+|.|.|..+ .+.|.|.++|.+|
T Consensus 81 ~C~a~n~~~----~~~l~V~~~P~pp 102 (104)
T 2e6p_A 81 ECRTEGVSA----FFGVTVQDPSGPS 102 (104)
T ss_dssp EEECSSCCC----CEEEEEECCCCSS
T ss_pred EEEECCceE----EEEEEEcCCCCCc
Confidence 999999854 6677787776554
No 448
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.9e-14 Score=98.83 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=75.8
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+.+|+.+.|.|.+.+ |.+.+.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEG-----TMAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEET-----TEEEEEESSCCTTTCSEEEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECC-----CEEEEEECCCCcccCEEEEEE
Confidence 566666677788899999999999998 88899999999999877776655311 245799999999999999999
Q ss_pred EEeCCcceEEEEEEEEeeeecCC
Q psy16652 353 AANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
|.| ...++.|.|.++|..+
T Consensus 82 a~n----~~~~~~l~V~~~p~~~ 100 (103)
T 2edf_A 82 VEA----SKSTASLHVEEKASGP 100 (103)
T ss_dssp CSS----CEEEEEEEECCCSSSS
T ss_pred Ecc----CCcEEEEEEeCCCCCC
Confidence 999 3677888888877554
No 449
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.51 E-value=3.2e-13 Score=105.40 Aligned_cols=149 Identities=13% Similarity=0.150 Sum_probs=97.6
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
++..+..+.+.+|++|+|.|.+.......+.|||.........+............+|+.+..+.....+.|.|.+++.+
T Consensus 3 VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~ 82 (200)
T 3rgv_A 3 VTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQEI 82 (200)
T ss_dssp EECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCST
T ss_pred cEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcCc
Confidence 45556777899999999999998755568999997644333333333333333456889888666677889999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
|+|.|.|.+........-....|.|...... +.+.+. ......++|.|.+.+ +|..++.|.+++..+..
T Consensus 83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~---~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~ 154 (200)
T 3rgv_A 83 DSAVYYCAANSGTYQRFGTGTKLQVVPNIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 154 (200)
T ss_dssp TCEEEEEEEESSSCCCCCCCEEEEEECCCSS---CCCEEEEEEESSSSSCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred cCCCEEEEeccCcccccCcCEEEEEeCCCCC---CCCeEEEccCCCCCceEEEEcccccCCeEeEeccCCcEEee
Confidence 9999999986321112233456666543110 011111 112234789999987 45347999999876654
No 450
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=99.35 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=73.4
Q ss_pred CeEEecCCCcccccCCcEEEEEEEecc---CCCeEEEEECCE-EecC--CCceeeeeeec-cCccccceEEEeecCCCCC
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGV-QIMN--NQHYSVSHFAT-SDEFSDTSLRVITIERRQF 346 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~ 346 (384)
+.+...|....+.+|+.++|.|.+.|. |.|.|.|++++. .+.. ..++.+..... ........|.|.++..+|+
T Consensus 13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 92 (118)
T 2edn_A 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR 92 (118)
T ss_dssp SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence 344556677889999999999999875 788999999752 2221 23333332111 1112357899999999999
Q ss_pred eEEEEEEEeCCcceEEEEEEEEeee
Q psy16652 347 GQYACKAANKYGSAQKEIELFDRET 371 (384)
Q Consensus 347 G~Y~C~a~n~~g~~~~~~~l~v~~~ 371 (384)
|.|+|.|.|..|..+..+.|.|.++
T Consensus 93 G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 93 GYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp SCEEEEEECSSCEEEEEECCEEECC
T ss_pred EEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 9999999999999999999999875
No 451
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.49 E-value=2.3e-12 Score=102.19 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=101.6
Q ss_pred EeecCceEEEEEEec-ccC---CCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCce-eeEEEE
Q psy16652 194 IVSEGQTVYLYCYAN-GFP---APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM-KRNIAV 268 (384)
Q Consensus 194 ~~~~g~~~~l~C~~~-~~~---~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~~l 268 (384)
.+..|+.++|.|.+. +.| +..+.|+|++..+.. ....|.+..+...++|.|+|.+.+..+... +..+.+
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtV 86 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN------NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEE
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC------CcceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEE
Confidence 367899999999985 455 347999999866432 234789999999999999999999766542 222333
Q ss_pred EEEecCeEEecC-CCcccccCCcEEEEEEE--ec-cC-----CCeEEEEECCEEecCCCceeeeeeeccCccccceEEEe
Q psy16652 269 EVEFAPVITINR-PRQGQALQYDAILECHV--EA-YP-----PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI 339 (384)
Q Consensus 269 ~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~--~~-~p-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 339 (384)
.....+.+.+.. .......+..+.|.+.+ .| .| ..++.|++++..+.. ...|++.
T Consensus 87 T~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg----------------Aq~lT~s 150 (304)
T 3shs_A 87 MEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT----------------TQDITIQ 150 (304)
T ss_dssp ECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES----------------SSEEEEC
T ss_pred eccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC----------------cccccee
Confidence 332233333322 22334556788898887 54 34 358999999987742 3356777
Q ss_pred ecCCCCCeEEEEEEEeCCc
Q psy16652 340 TIERRQFGQYACKAANKYG 358 (384)
Q Consensus 340 ~~~~~d~G~Y~C~a~n~~g 358 (384)
.....++|.|+|.+.|..+
T Consensus 151 S~TateaG~YtV~VTn~~~ 169 (304)
T 3shs_A 151 EFTADKNGVYTVKVWGESE 169 (304)
T ss_dssp SCCGGGCEEEEEEEESSSG
T ss_pred eEEecCCeEEEEEEEcCCC
Confidence 7888899999999999876
No 452
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.49 E-value=4e-13 Score=104.02 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=104.3
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVE 269 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 269 (384)
+....+.+|+++.|+|.+....+..+.|...-...... .......+.+.+++ +|.+.|.|.+.... ....+.+.|.
T Consensus 9 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~--~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~ 84 (196)
T 3bn3_B 9 PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQ--RGLRWLARQLVDIR-EPETQPVCFFRCAR-RTLQARGLIR 84 (196)
T ss_dssp SSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEE--EETTEEEEEEEEEC-SSEECCEEEEEETT-EEEEEECEEE
T ss_pred CCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEc--cccCceEEEEEEEc-cCCCceEEEEECCC-CceEEEEEEE
Confidence 45567999999999999964323367775421111100 00112248888988 77777999987643 4457788899
Q ss_pred EEecCe-EEecCCCcccccCCcEEEEEEEec-cCCCe--EEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 270 VEFAPV-ITINRPRQGQALQYDAILECHVEA-YPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 270 v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
|...|. +.+.+....+.+|+.++|.|.+.+ .|... |.|+++++++.... +. ...........++++.....+|
T Consensus 85 Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~-~~--~~~~~~~~~t~~~~~~~~r~D~ 161 (196)
T 3bn3_B 85 TFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRS-FA--GEPPRARGAVLTATVLARREDH 161 (196)
T ss_dssp EEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEE-CT--TSCTTCCCEEEEEEEECCGGGT
T ss_pred EecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccc-cc--cccccccceeEEEEEeeeeccC
Confidence 988775 334444455899999999999987 45444 89999999885332 10 0000000012445555555555
Q ss_pred CeEEEEEEEeCCcc
Q psy16652 346 FGQYACKAANKYGS 359 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~ 359 (384)
...|+|.|.|..+.
T Consensus 162 g~~~sC~A~l~l~~ 175 (196)
T 3bn3_B 162 GANFSCRAELDLRP 175 (196)
T ss_dssp TCEEEEEEEEECGG
T ss_pred CCeEEEEEEccCCc
Confidence 55999999998873
No 453
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.49 E-value=1.1e-12 Score=105.99 Aligned_cols=155 Identities=18% Similarity=0.268 Sum_probs=96.8
Q ss_pred CceEEeecCceEEEEEEecccC--CCeEEEEeCCC--ccc------------ccCceeEe------ccEEEEcCCCCCCC
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFP--APTISWRRDNS--AAL------------STGGSIYR------GNILKIPNITKTDR 247 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~--~~~v~W~~~~~--~~~------------~~~~~~~~------~~~l~i~~~~~~d~ 247 (384)
+..+.+.+|++++|.|.+.+.+ ...+.|++... ... ...+.... ...|.|.+++.+|+
T Consensus 8 p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 87 (229)
T 1hxm_A 8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDE 87 (229)
T ss_dssp CSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred CCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHC
Confidence 4567789999999999997643 35799998532 111 01112111 13799999999999
Q ss_pred eEEEEEEEeCCC------C-ceeeEEEEEEEe------cCeEEecCCCcccccCCcEEEEEEEecc-CCC-eEEEEECCE
Q psy16652 248 GTYYCVAQNGVG------R-GMKRNIAVEVEF------APVITINRPRQGQALQYDAILECHVEAY-PPP-AIVWIKDGV 312 (384)
Q Consensus 248 G~Y~C~~~~~~~------~-~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~ 312 (384)
|.|.|.+.+... . .......|.|.. +|.+.+. . ..+.|.|.+.+. |.+ .+.|.++ .
T Consensus 88 g~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~W~~~-~ 158 (229)
T 1hxm_A 88 GSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRINLVSS-K 158 (229)
T ss_dssp EEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEEEECS-S
T ss_pred eEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEEEecC-C
Confidence 999999987531 1 111234566653 3433321 1 124899999884 554 8999999 7
Q ss_pred EecCCCceeeeeeeccCccccceEEEeecC-CCCCeEEEEEEEeCCcce
Q psy16652 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIE-RRQFGQYACKAANKYGSA 360 (384)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~ 360 (384)
.+...... ... . .++.+.+.... .+|.|.|+|.|.|..+..
T Consensus 159 ~~~~~~~~-~~~--~----~dg~y~~~~~~~~~~~~~ytC~V~h~~~~~ 200 (229)
T 1hxm_A 159 KITEFDPA-IVI--S----PSGKYNAVKLGKYEDSNSVTCSVQHDNKTV 200 (229)
T ss_dssp EEEECCCE-EEE--C----TTSSEEEEEEEEETTTTTCEEEEEETTEEE
T ss_pred EEecCccc-eEE--C----CCCcEEEEECcccCCCCcEEEEEEeCCCCc
Confidence 66533211 111 1 23344443333 367899999999997543
No 454
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=99.49 E-value=1.3e-13 Score=109.22 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=90.6
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
++..+..+.+.+|++|+|.|.+.+.....+.|++.........+............+|+.+..+.......|.|.+++.+
T Consensus 3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 82 (203)
T 2bnu_A 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (203)
T ss_dssp EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence 45567778899999999999987655558999997654222222222222222356889887666677889999999999
Q ss_pred CCeeEEEEEEEcc---C-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecc-cCCCeE
Q psy16652 155 DAGIYKCEVIISL---N-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANG-FPAPTI 215 (384)
Q Consensus 155 d~G~Y~C~~~~~~---~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~~~~~v 215 (384)
|+|.|.|.+.+.. . ........|.|....... .+.+.+ ...+.++|.|.+.+ +|.+.+
T Consensus 83 Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~---~P~V~~~~~~~~~~~L~C~~~g~~P~p~v 147 (203)
T 2bnu_A 83 DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNP---DPAVYQLRRSKSSDKSVCLFTDFDSQTNV 147 (203)
T ss_dssp GCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSC---CCEEEEECCSSSSSCEEEEEESCCTTCCC
T ss_pred cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCC---CCeEEecCCCCCCcEEEEEccccccCccc
Confidence 9999999997532 1 112233566665432100 111111 12347899999988 788877
No 455
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.49 E-value=5.4e-13 Score=111.02 Aligned_cols=170 Identities=12% Similarity=0.200 Sum_probs=107.6
Q ss_pred CceEEeecCceEEEEEEecccCCCeEEEEeCCCcccc-cCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 190 ~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
+....+.+|+++.|+|.+....+..+.|...-..... ..+. ....+.+.+++.+ |.|+|.+... +....+.+.|
T Consensus 6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~--~~~~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v~l 80 (291)
T 1mq8_A 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGN--NRKVYELSNVQED--SQPMCYSNCP-DGQSTAKTFL 80 (291)
T ss_dssp CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCS--SEEEEEEESCCSC--CCCEEEEECS-SCEEEEECEE
T ss_pred CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCC--ceEEEEEEecccC--CeEEEEEEcC-CccEEEEEEE
Confidence 3456799999999999996433335888642111111 1111 1125788888753 4699999754 3445777888
Q ss_pred EEEecCeE-EecCCCcccccCCcEEEEEEEecc-CCC--eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCC
Q psy16652 269 EVEFAPVI-TINRPRQGQALQYDAILECHVEAY-PPP--AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344 (384)
Q Consensus 269 ~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 344 (384)
.|..+|.- .+......+.+|+.++|.|.+.+. |.+ +|.|+++++++...... ......+|.+...+.+
T Consensus 81 ~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--------~~~~~~~l~~~~~~~D 152 (291)
T 1mq8_A 81 TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDH 152 (291)
T ss_dssp EECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--------BTTEEEEEECCCSSSC
T ss_pred EEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--------CCCceEEEEeeeeecc
Confidence 88887753 333334558899999999999874 444 59999999888533210 0112345666666666
Q ss_pred CCeEEEEEEEeCCcc--------eEEEEEEEEeeee
Q psy16652 345 QFGQYACKAANKYGS--------AQKEIELFDRETQ 372 (384)
Q Consensus 345 d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~~ 372 (384)
|.+.|+|.|.|..+. .++...|.|..+|
T Consensus 153 ~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P 188 (291)
T 1mq8_A 153 HGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188 (291)
T ss_dssp SSCEEEEEEEEECGGGTSCEEEECCCCEECBC----
T ss_pred CCceEEEEEEecCCccCCccccccccceEEEEEecC
Confidence 777999999998663 2344566666664
No 456
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=97.69 Aligned_cols=100 Identities=15% Similarity=0.252 Sum_probs=80.3
Q ss_pred eeEEEEEEEec-CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeec
Q psy16652 263 KRNIAVEVEFA-PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341 (384)
Q Consensus 263 ~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 341 (384)
+..+.|.|... |.+...+....+.+|+.+.|.|.+.+. |.+.|++++..+..+.++.+.... ....|.|.++
T Consensus 8 ~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~v 80 (113)
T 2edh_A 8 RTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDG-----ARCELQIRGL 80 (113)
T ss_dssp CCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEET-----TEEEEEECSC
T ss_pred cEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECC-----CEEEEEECCC
Confidence 44556667744 477777778889999999999999774 789999999999877777665311 2357999999
Q ss_pred CCCCCeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 342 ERRQFGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 342 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+.+|+|.|+|.| |....++.|.|.++|.
T Consensus 81 ~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 81 VAEDAGEYLCMC----GKERTSAMLTVRAMPS 108 (113)
T ss_dssp CSTTCEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred ChhhCEEEEEEe----CCCCEEEEEEEeCCCC
Confidence 999999999999 7788889999987764
No 457
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.23 E-value=2.6e-15 Score=116.21 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=90.4
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
++..+..+.+.+|++|+|.|.+.+.....+.|+|.........+............+|+.+..+.......|.|.+++.+
T Consensus 3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~ 82 (185)
T 3c6l_A 3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPG 82 (185)
Confidence 34456677789999999999987655458999997643222222222111112245677776544556778999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecC-----CccccCCCceEEeecCceEEEEEEecc-cCCCeEEEEeCCCcc
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRP-----PIISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAA 224 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~ 224 (384)
|+|.|.|.+... .........|.|... |.+....+ ..+.++|.|.+.+ +|.++|.|..+....
T Consensus 83 DsG~Y~C~~~~~-~~~fg~gT~L~V~~~~~~~~P~V~~~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~ 151 (185)
T 3c6l_A 83 DSATYFCAASDN-RIFFGDGTQLVVKPNIQNPEPAVYQLKD------PRSQDSTLCLFTDFDSQINVPKTMESGTF 151 (185)
Confidence 999999998641 111122234555422 22221111 1227999999987 788899998766544
No 458
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.48 E-value=1.4e-13 Score=94.87 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=69.2
Q ss_pred CCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcce
Q psy16652 281 PRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 360 (384)
....+.+|+.+.|.|.+.+ .|.+.|+++|..+....++.+. ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus 9 ~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 77 (95)
T 4hwu_A 9 EAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTVDSE 77 (95)
T ss_dssp EEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred CcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe---------CCEEEECcCCcccCEEEEEEEccCCCcE
Confidence 3455789999999999987 5799999999999777665542 5689999999999999999999999999
Q ss_pred EEEEEEEEeeeec
Q psy16652 361 QKEIELFDRETQT 373 (384)
Q Consensus 361 ~~~~~l~v~~~~~ 373 (384)
...+.|.|.+++.
T Consensus 78 ~~~~~l~V~~~~~ 90 (95)
T 4hwu_A 78 TWIFMVNVTDAAE 90 (95)
T ss_dssp EEEEEEEECCC--
T ss_pred EEEEEEEEeCCcc
Confidence 9999999987653
No 459
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}
Probab=99.48 E-value=8.5e-12 Score=97.46 Aligned_cols=179 Identities=18% Similarity=0.288 Sum_probs=114.6
Q ss_pred eCcceeeeccCcEEEEEEeecCC--CccEEEEEeCCCCCCccc-ceeccCcee----eeCCceEEeeCCCCceEEEEEee
Q psy16652 78 ISQEQIKDIAQTADLKCSVQYAD--DYPVIWMKMDTAKKMEPL-PISMSGSLI----IHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 78 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
+...-++++|+++.|.|.+.+.. ...+.|+|.......+-+ .+....... ...+|+.+..+.......|.+++
T Consensus 6 eSG~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~s 85 (254)
T 4f9p_D 6 QSGAEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSS 85 (254)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred eECCceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEcc
Confidence 34455689999999999998854 457999996644222211 122122221 23579999998888889999999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecC----Cc----------------cccCCCceEEeecCceEEEEEEeccc
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRP----PI----------------ISDNSTRSVIVSEGQTVYLYCYANGF 210 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----~~----------------~~~~~~~~~~~~~g~~~~l~C~~~~~ 210 (384)
++.+|++.|.|.-. ......-.-..|+|... |. ....++..+.+.+|+.++|.|.+...
T Consensus 86 L~~eDTAvYYCAr~-~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~ 164 (254)
T 4f9p_D 86 LTSDDSAVYFCARS-DYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQS 164 (254)
T ss_dssp CCGGGCEEEECEES-SSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSC
T ss_pred CCCCCCEEEEEEec-CCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCc
Confidence 99999999999642 22222333445555321 10 11123556678999999999998654
Q ss_pred CCCeEEEEeCC--Cccc------------ccCceeEe----ccEEEEcCCCCCCCeEEEEEEEeC
Q psy16652 211 PAPTISWRRDN--SAAL------------STGGSIYR----GNILKIPNITKTDRGTYYCVAQNG 257 (384)
Q Consensus 211 ~~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~~~~~ 257 (384)
-...+.||+.. +... ...++... ..+|+|..++.+|.+.|.|.-.+.
T Consensus 165 ~~~~l~WyqQ~PG~~p~lLiy~~s~~~sGvp~RFSgS~sgt~ftLtIs~lq~eD~A~YYC~q~~~ 229 (254)
T 4f9p_D 165 ISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS 229 (254)
T ss_dssp CTTCCEEEEECTTSCCEEEEETTTEECTTSCTTCEEECCTTEEEEEEESCCTTCCEEEEEEECSS
T ss_pred ccCCcEEEEECCCCCCEEEEEeeeecCCCCCCCEEeeeeCCEEEEEECCCCHHHCEEEEEeecCC
Confidence 34458898742 2110 00111111 237999999999999999976543
No 460
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.47 E-value=5.3e-13 Score=91.10 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=69.2
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.|...+.+..+.+|++++|.|.+.+ +.+.+.|++++... ..+.++.+.. .....+|.|.
T Consensus 3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i--------------~~~~~~~i~~--~g~~~~L~I~ 65 (93)
T 1waa_A 3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPL--------------AASPDCEIIE--DGKKHILILH 65 (93)
T ss_dssp CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEEC--------------CCBTTEEEEE--ETTEEEEEEC
T ss_pred CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEEC--------------cCCCCEEEEE--ECCEEEEEEC
Confidence 46788888899999999999999999976 44689999987542 2345666655 3456789999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 181 (384)
+++.+|+|.|+|.+.| ......|.|.+
T Consensus 66 ~v~~~D~G~Y~C~a~n-----~~~sa~L~V~~ 92 (93)
T 1waa_A 66 NCQLGMTGEVSFQAAN-----TKSAANLKVKE 92 (93)
T ss_dssp SCCGGGCEEEEEEETT-----EEEEEEEEEEC
T ss_pred CCChhhCEEEEEEECC-----CcEEEEEEEEc
Confidence 9999999999999853 23455666653
No 461
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.47 E-value=4.2e-13 Score=93.40 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=72.5
Q ss_pred cCeEEecCCC-cccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEE
Q psy16652 273 APVITINRPR-QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351 (384)
Q Consensus 273 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 351 (384)
+|.+...+.. ..+.+|+.+.|.|.+. .|.+.+.|+++|..+..+.++.+.... ....|.|.+++.+|+|.|+|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKG-----CQRILFINNCQMTDDSEYYV 80 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEET-----TEEEEEEEEECTTTCCEEEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecC-----CEEEEEEcCCCcCcCEEEEE
Confidence 4566555554 4677999999999998 688999999999999877776654311 23479999999999999999
Q ss_pred EEEeCCcceEEEEEEEEeeee
Q psy16652 352 KAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 352 ~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.| |....++.|.|.++|
T Consensus 81 ~a----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 81 TA----GDEKCSTELFVRSGP 97 (100)
T ss_dssp EE----TTEEEEEEEEECCSC
T ss_pred EE----CCceEEEEEEEecCC
Confidence 99 778888999998765
No 462
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=105.62 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=95.4
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQET 154 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 154 (384)
+...+..+.+.+|++|+|.|.+.+.....+.|+|.........+............+|+.+..+.......|.|.+++.+
T Consensus 3 V~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~~ 82 (199)
T 3gsn_A 3 VEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQPE 82 (199)
T ss_dssp CEEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCGG
T ss_pred EEECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCccc
Confidence 45567778899999999999997755568999997644333333332222222345788777656778899999999999
Q ss_pred CCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 155 DAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 155 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
|+|.|.|.+........-....|.|...... +.+.+... ....++|.|.+.+ +|..++.|.+++..+..
T Consensus 83 DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~---~~P~V~~~~~~~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~ 154 (199)
T 3gsn_A 83 DSATYLCARNTGNQFYFGTGTSLTVIPNIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYIT 154 (199)
T ss_dssp GCEEEEEEEESSSCEEECSCEEEEEECCCSS---CCCEEEECCCSSSSSSCCEEEETCCTTCCSSCSSCSSEEEC
T ss_pred CCccEEEEEcccccccCCCCEEEEEecccCC---CCCEEEEcccCCCCceEEEEeecccCCeEeEeccCCCeEec
Confidence 9999999985321112223356666542100 01111111 1123689999988 45347899998876543
No 463
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9e-14 Score=97.37 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=73.6
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCC-eEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+.+...+....+.+|+.+.|.|.+.+.|.+ .+.|+++|..+..+.++.+.... ...+|.|.+++.+|+|.|+|.
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 83 (104)
T 2eny_A 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG-----RKYILVVREAAPSDAGEVVFS 83 (104)
T ss_dssp CCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEET-----TEEEEEECSCCTTTCSCEEEE
T ss_pred CEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcC-----CEEEEEECCCCHHHCEEEEEE
Confidence 345455667788999999999999987754 89999999999887777654311 245799999999999999999
Q ss_pred EEeCCcceEEEEEEEEeeeecCC
Q psy16652 353 AANKYGSAQKEIELFDRETQTGD 375 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~~~~~~ 375 (384)
|. ....+..|.|.++|..+
T Consensus 84 a~----~~~~~a~L~V~~~p~~~ 102 (104)
T 2eny_A 84 VR----GLTSKASLIVRERSGPS 102 (104)
T ss_dssp ET----TEEEEECEEEECCCSSC
T ss_pred EC----CeeEEEEEEEeCCCcCC
Confidence 84 45678889998887554
No 464
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.47 E-value=2.5e-13 Score=96.09 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=72.6
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCE-EecC-------CCceeeeeeeccCccccceEEEeecC
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGV-QIMN-------NQHYSVSHFATSDEFSDTSLRVITIE 342 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~ 342 (384)
..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++. .+.. ..++.+.... .....|.|.+++
T Consensus 4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~----~~~~~L~I~~v~ 79 (108)
T 3m45_A 4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS----WHELSISVSDVS 79 (108)
T ss_dssp ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEES----SSEEEEEECSCC
T ss_pred ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecC----CCcEEEEECCCC
Confidence 344555556777888999999999999999999999999875 2221 2244332211 135689999999
Q ss_pred CCCCeEEEEEEEeCCcceEEEEEEEEeeee
Q psy16652 343 RRQFGQYACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
.+|+|.|+|.|.| .|.....+.|.|.++|
T Consensus 80 ~~D~G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 80 LSDEGQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp GGGCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred hhHCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 9999999999999 8999999999988754
No 465
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.46 E-value=7.3e-13 Score=93.68 Aligned_cols=104 Identities=18% Similarity=0.281 Sum_probs=76.3
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
..|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.. .+.........+.|+.+... .....+|.|.+
T Consensus 5 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~------~~~~~~~~~~~~~r~~~~~~-~~~~~~L~I~~ 77 (108)
T 3m45_A 5 GSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSISVSD 77 (108)
T ss_dssp ---CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCC------EEEETTEECSCCTTEEEEEE-SSSEEEEEECS
T ss_pred cCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCc------eEEEcCCcccccCcEEEeec-CCCcEEEEECC
Confidence 456677778889999999999999999888889999986542 11122222334557776543 33577899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 183 (384)
++.+|+|.|+|.+.+ .+..+..+.|.|..+|
T Consensus 78 v~~~D~G~Y~C~~~n--~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 78 VSLSDEGQYTCSLFT--MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp CCGGGCEEEEEEECS--SSCEEEEEEEEEECCC
T ss_pred CChhHCeEEEEEEEc--CCCcEEEEEEEEEcCC
Confidence 999999999999986 5667777888887654
No 466
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.46 E-value=7.7e-13 Score=94.68 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=79.2
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++.... ....++.+..+ ..+..+|.|
T Consensus 12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~-------------~~~~~~~~~~~-~~~~~~L~I 77 (116)
T 2kkq_A 12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQ-------------FNTDRISLYQD-NTGRVTLLI 77 (116)
T ss_dssp CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECC-------------CCBTTEEEEEC-TTCEEEEEE
T ss_pred CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECc-------------CCCCeEEEEeC-CCCeEEEEE
Confidence 3467888888999999999999999999988888999999775421 12355655543 234568999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~ 185 (384)
.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|..
T Consensus 78 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 78 KDVNKKDAGWYTVSAVNEA-GVTTCNTRLDVTARPNQ 113 (116)
T ss_dssp EEECGGGCEEEEEEEEETT-EEEEEEEEEEEECCSCC
T ss_pred CCCCcccCEEEEEEEEcCC-CeEEEEEEEEEeCCCCC
Confidence 9999999999999998654 45677888888876643
No 467
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo sapiens} PDB: 2nx5_D 4dzb_A
Probab=99.46 E-value=2.3e-12 Score=101.56 Aligned_cols=171 Identities=14% Similarity=0.173 Sum_probs=102.3
Q ss_pred CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCee
Q psy16652 79 SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGI 158 (384)
Q Consensus 79 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 158 (384)
+....+.+|++|+|.|.+.+.....+.|||.........+....... ....+|+.+..+.......|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~-~~~~~Rf~~~~~~~~~~~~L~I~~~~~~Dsg~ 84 (200)
T 2nw2_A 6 PTEMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDG-LEEKGRFSSFLSRSKGYSYLLLKELQMKDSAS 84 (200)
T ss_dssp CSEEEEETTCCEEEEEECCCSSCCCEEEEEECTTSCCEEEEEECSSE-EEEETTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEccCCCEEEEEEECCCCCceEEEEEeCCCCCcEEEEEEcCCC-cccCCceEEEecCCCCEEEEEECccCcccCCc
Confidence 66677899999999999876555689999987543333333222222 22268898876667778999999999999999
Q ss_pred EEEEEEEc--cC-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecccCCC-eEEEEeCCCcccccCceeE
Q psy16652 159 YKCEVIIS--LN-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIY 232 (384)
Q Consensus 159 Y~C~~~~~--~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~ 232 (384)
|.|.+... .. ........|.|...+... .+.+.+ .....++|.|.+.+..+. ++ .+... ......
T Consensus 85 Y~C~~~~~~~~~~~~fg~gt~L~V~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~gf~P~~~v---~~~~~---~~~~~t 155 (200)
T 2nw2_A 85 YLCAVQASGGSYIPTFGRGTSLIVHPYIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNV---SQSKD---SDVYIT 155 (200)
T ss_dssp EEEEEC---CCCCCEECCCEEEEEECCCSSC---CCEEEEEEECC--CCEEEEEESCCTTCCC---CCCSS---SSEEEC
T ss_pred EEEEEEcCCcceeeeeCCCEEEEEecCcccC---CCeEEEcCCCCCCceEEEEeecccCCcEe---ecccc---cceEec
Confidence 99998641 11 112234566665421100 111111 123378999999885443 33 11111 111111
Q ss_pred eccEEEEcCCCCCCCeEEEEEEEeCCC
Q psy16652 233 RGNILKIPNITKTDRGTYYCVAQNGVG 259 (384)
Q Consensus 233 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 259 (384)
....|.+......+.|.+.|...+...
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (200)
T 2nw2_A 156 DKCVLDMRSMDFKSNSAVAWSNKSDFA 182 (200)
T ss_dssp CCEEEEEGGGTEEEEEEEEEESSSSCC
T ss_pred CchhhhhhhcccccccceeccCCCceE
Confidence 334566666666677888887766443
No 468
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.46 E-value=3.3e-13 Score=97.78 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=67.2
Q ss_pred cccccCCcEEEEEEEecc--CCCeEEEEECCEEecC-----CCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEe
Q psy16652 283 QGQALQYDAILECHVEAY--PPPAIVWIKDGVQIMN-----NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355 (384)
Q Consensus 283 ~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 355 (384)
..+.+|+.+.|.|.+.|. |.+.+.|++++..+.. ..+.... ........+.|.|.+++.+|+|.|+|.|.|
T Consensus 18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 95 (122)
T 3s35_X 18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS--GSEMKKFLSTLTIDGVTRSDQGLYTCAASS 95 (122)
T ss_dssp EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE--ETTEEEEEEEEEESSCCGGGCEEEEEEEEC
T ss_pred EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc--CCceeeEEEEEEECCCCcccCEEEEEEEcc
Confidence 367899999999999984 4568999998874421 1111110 000011356799999999999999999999
Q ss_pred CCcceEEEEEEEEeeeecC
Q psy16652 356 KYGSAQKEIELFDRETQTG 374 (384)
Q Consensus 356 ~~g~~~~~~~l~v~~~~~~ 374 (384)
..|....++.|.|.++|..
T Consensus 96 ~~g~~~~~~~l~V~~~p~i 114 (122)
T 3s35_X 96 GLMTKKNSTFVRVHEKPFV 114 (122)
T ss_dssp SSCEEEEEEEEEEEEEECC
T ss_pred CCCceEEEEEEEEeccCeE
Confidence 9999999999999988753
No 469
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=93.02 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=59.4
Q ss_pred ccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcceEEE
Q psy16652 284 GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363 (384)
Q Consensus 284 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 363 (384)
.+.+|+.+.|.|.+.+ |.+.+.|++||.++..+.++.+.... ....|.|.+++.+|+|.|+|.|.|. +.+
T Consensus 17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~ 86 (91)
T 2lvc_A 17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEG-----PHRRLVLPATQPSDGGEFQCVAGDE----CAY 86 (91)
T ss_dssp ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEET-----TEEEEEESSCCGGGCSEEEEECSSC----EEE
T ss_pred EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecC-----CeEEEEeCCCChhhcEEEEEEEcce----EEE
Confidence 3467999999999966 88899999999999888887765421 2457999999999999999999665 445
Q ss_pred EEEE
Q psy16652 364 IELF 367 (384)
Q Consensus 364 ~~l~ 367 (384)
+.|.
T Consensus 87 ~~lt 90 (91)
T 2lvc_A 87 FTVT 90 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 470
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=4.6e-13 Score=93.06 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=71.9
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++... ....++.+... ......|.|.
T Consensus 3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~--------------~~~~~~~~~~~-~~~~~~L~i~ 67 (99)
T 1g1c_A 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI--------------ERSDRIYWYWP-EDNVCELVIR 67 (99)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEEEEEE-ETTEEEEEEC
T ss_pred CCCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEEC--------------CCCCCEEEEEc-CCCEEEEEEC
Confidence 34677888888889999999999999998888899999977542 11233332221 2346689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEec
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 181 (384)
+++.+|+|.|+|.+.|.. +.....+.|.|..
T Consensus 68 ~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 68 DVTGEDSASIMVKAINIA-GETSSHAFLLVQA 98 (99)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC
T ss_pred CCCcCCCEEEEEEEEECC-CcEEEEEEEEEec
Confidence 999999999999998654 4455666777653
No 471
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.45 E-value=5.3e-13 Score=93.48 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=74.6
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++... ....++.+.. ......|.|.
T Consensus 6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~--------------~~~~~~~~~~--~~~~~~L~i~ 69 (103)
T 3qp3_A 6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVEL--------------QESSKIHYTN--TSGVLTLEIL 69 (103)
T ss_dssp CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEEEEE--ETTEEEEEEC
T ss_pred CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEEC--------------CCCCCEEEEE--CCCEEEEEEc
Confidence 35678888888889999999999999999888899999977542 2234555544 3456689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 182 (384)
+++.+|+|.|+|.+.|.. +..+..+.|.|...
T Consensus 70 ~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 70 DCHTDDSGTYRAVCTNYK-GEASDYATLDVTGG 101 (103)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred CCCcccCEEEEEEEEeCC-CcEEEEEEEEEECC
Confidence 999999999999998654 44566777777643
No 472
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=99.12 Aligned_cols=95 Identities=25% Similarity=0.324 Sum_probs=69.0
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCc---eeeeeeeccCccccceEEE-----eecC
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH---YSVSHFATSDEFSDTSLRV-----ITIE 342 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i-----~~~~ 342 (384)
..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..... . .+..+.+ .+++
T Consensus 7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~i~~~~v~ 80 (117)
T 2v9t_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML-L-----PSGSLFFLRIVHGRKS 80 (117)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEE-C-----TTSCEEESSCCCBTTB
T ss_pred cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEE-e-----cCCcEEEEEEEeCCCC
Confidence 4577887777778889999999999999999999999999998865431 11111 0 1223333 3557
Q ss_pred CCCCeEEEEEEEeCCcceEEE-EEEEEeee
Q psy16652 343 RRQFGQYACKAANKYGSAQKE-IELFDRET 371 (384)
Q Consensus 343 ~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~ 371 (384)
.+|+|.|+|.|.|..|...+. +.|.+..+
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~s~~~~l~~~~~ 110 (117)
T 2v9t_A 81 RPDEGVYVCVARNYLGEAVSHDASLEVAAA 110 (117)
T ss_dssp CSSCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred cCcCEEEEEEEEeCccceEeeeEEEEhhhh
Confidence 899999999999999987643 56655443
No 473
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.45 E-value=4.1e-13 Score=93.08 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCcccccCCcEEEEEEEe-ccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEEEeCCcc
Q psy16652 281 PRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359 (384)
Q Consensus 281 ~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 359 (384)
....+.+|+.+.|.|.+. +.|.+.+.|++++........ . .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 18 ~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (98)
T 1gl4_B 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--M--------DFNGILTIRNVQPSDAGTYVCTGSNMFAM 87 (98)
T ss_dssp CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--E--------EETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--e--------cCCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence 445688999999999998 689999999998644332221 1 13568999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16652 360 AQKEIELFDR 369 (384)
Q Consensus 360 ~~~~~~l~v~ 369 (384)
...++.|.|.
T Consensus 88 ~~~~~~l~V~ 97 (98)
T 1gl4_B 88 DQGTATLHVQ 97 (98)
T ss_dssp EEEEEEEEEC
T ss_pred cccEEEEEEe
Confidence 9999998875
No 474
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=99.73 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=77.8
Q ss_pred EEEEEecC-eEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCC
Q psy16652 267 AVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345 (384)
Q Consensus 267 ~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 345 (384)
.|.|..+| .+...+....+.+|+.+.|.|.+.+.|.|.+.|+++|..+..+.++.+... ......|.|.+++.+|
T Consensus 6 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~----~~~~~~L~I~~v~~~D 81 (115)
T 2cr6_A 6 SGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQ----PGGYHVLTLRQLALKD 81 (115)
T ss_dssp CCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCB----TTTBCCBEECSCCTTT
T ss_pred EEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEc----CCCEEEEEEcCCChhh
Confidence 34555555 555566777889999999999999999999999999999987776554311 1134679999999999
Q ss_pred CeEEEEEEEeCCcceEEEEEEEEeeeec
Q psy16652 346 FGQYACKAANKYGSAQKEIELFDRETQT 373 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~~~~~~~l~v~~~~~ 373 (384)
+|.|+|. .|....++.|.|.++|.
T Consensus 82 ~G~Y~C~----~g~~~~~~~L~V~~~p~ 105 (115)
T 2cr6_A 82 SGTIYFE----AGDQRASAALRVTEKPS 105 (115)
T ss_dssp CEEEEEE----ETTEECCEEEEEECCSS
T ss_pred CEEEEEE----ECCeeEEEEEEEECCCc
Confidence 9999999 46777778888887754
No 475
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.45 E-value=6.4e-13 Score=93.99 Aligned_cols=99 Identities=27% Similarity=0.453 Sum_probs=65.3
Q ss_pred EEEEEecCCccccCCCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeE--eccEEEEcCCCCCCCeEEEE
Q psy16652 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYC 252 (384)
Q Consensus 175 ~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C 252 (384)
+.|.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ .+..|.|.+++.+|+|.|+|
T Consensus 3 ~~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 81 (108)
T 3kvq_A 3 LTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81 (108)
T ss_dssp --------CCCBS-CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred eeECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence 3455556666653 35667889999999999999999999999999987765544433 34689999999999999999
Q ss_pred EEEeCCCCceeeEEEEEEEecCe
Q psy16652 253 VAQNGVGRGMKRNIAVEVEFAPV 275 (384)
Q Consensus 253 ~~~~~~~~~~~~~~~l~v~~~p~ 275 (384)
.+.|..|.. ...+.|.|..+|.
T Consensus 82 ~a~n~~g~~-~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 82 QACSVLGCA-KVEAFFIIEGAQE 103 (108)
T ss_dssp EEC----CE-EEEEEEEEEC---
T ss_pred EEEeCCCce-EEEEEEEEeCCCc
Confidence 999998875 6778888877664
No 476
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 4gkz_A* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D 4h1l_G
Probab=99.45 E-value=2e-12 Score=102.46 Aligned_cols=150 Identities=13% Similarity=0.209 Sum_probs=95.9
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeC-CceEEeeCCCCceEEEEEeecC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD-SRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
.+...+..+.+.+|++|+|.|.+.......+.|||.........+............ +|+.+..+.....+.|.|.+++
T Consensus 11 ~V~Qsp~~v~v~~G~sVtL~C~~s~~~~~~v~WyrQ~pg~~~~~Li~~~~~~~~~~~~~Rfs~s~~~~~~~~sLtI~~lq 90 (226)
T 3tjh_C 11 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 90 (226)
T ss_dssp EEECSCSEEEEETTSCEEECCEEEESSCEEEEEEEECTTSCCEEEEEECSSSSEEECGGGEEEEEETTTTEEEEEESSCC
T ss_pred EEEEeCCEEEEEcCCCEEEEEEEecCCCCeEEEEEECCCCCcEEEEEecCCCccccccCcEEEEEcCCCCEEEEEEecCC
Confidence 455666777899999999999998755568999997644333333332222222334 8898876667788999999999
Q ss_pred CCCCeeEEEEEEEcc-Cc--ceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 153 ETDAGIYKCEVIISL-NN--KVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
.+|+|.|.|.+.... .. ..-....|.|....... .+.+. ......++|.|.+.+ +|..++.|.+++..+..
T Consensus 91 ~~DSG~YyCa~~~~~~~~~~~fG~GT~LtV~~~~~~~---~P~V~~~~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~ 167 (226)
T 3tjh_C 91 WSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 167 (226)
T ss_dssp GGGCEEEEEEEEESSCSSSEEECCCEEEEEECCCSSC---CCEEEEEEECC---CEEEEEESCCTTCCCCCCSCTTEEEC
T ss_pred cccCCCEEEEEEecCCccccccCCCeEEEEeCCCCCC---CCEEEEcccCCCCeEEEEEcccccCCcEEEeeccCceeec
Confidence 999999999987421 11 12233566665431100 11111 111234789999987 55447999998876544
No 477
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.45 E-value=3.6e-13 Score=95.10 Aligned_cols=98 Identities=21% Similarity=0.291 Sum_probs=74.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++... ....++.+.. ......|.|
T Consensus 10 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~--------------~~~~~~~~~~--~~~~~~L~i 73 (107)
T 3irg_B 10 QGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQL--------------AASERLSFPA--DGAEHGLLL 73 (107)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEEC--------------CCCSSEECCE--ETTEEEEEE
T ss_pred CCCCCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeEC--------------CCCCcEEEEe--CCCEEEEEE
Confidence 445778888888889999999999999998888899999976542 1234444433 344568999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 183 (384)
.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|
T Consensus 74 ~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 74 TAALPTDAGVYVCRARNAA-GEAYAAAAVTVLEPP 107 (107)
T ss_dssp SSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEC--
T ss_pred ccCCHHhCEEEEEEEEcCC-CcEEEEEEEEEEcCC
Confidence 9999999999999998654 446677888887654
No 478
>4f9l_D 20.1 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; HET: NAG; 3.14A {Mus musculus}
Probab=99.44 E-value=2.6e-12 Score=101.05 Aligned_cols=180 Identities=17% Similarity=0.306 Sum_probs=106.3
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.++..|..+.+.+|++|+|.|.....-...+.||+......+..++........-..+||.... ....++|.|.+++.
T Consensus 3 vlTQsP~sls~s~G~~vtisC~~S~~i~~y~~WyqQ~pG~~P~lLiy~~s~~~sGvp~RFSgS~--Sgt~ftLtIs~lq~ 80 (259)
T 4f9l_D 3 VLTQSPSSLSASLGDTITITCHASQNINLWLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGSG--SATGFTLTISSLQP 80 (259)
T ss_dssp CEEEECSBCCBCTTCEEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ETTEEEEEEESCCG
T ss_pred CEEccCCeEEECCCCCEEEEEEcCCCCCCCEEEEEECCCCCCEEEEECCCccCCCCCCCEEeec--cCCeEEEEEcccCh
Confidence 3556677778899999999998754434469999976554333333222111111235776655 45678899999999
Q ss_pred CCCeeEEEEEEEccCcceeeeEEEEEec----C------Cc-----------cccCCCceEEeecCceEEEEEEecccCC
Q psy16652 154 TDAGIYKCEVIISLNNKVSAEVELIVRR----P------PI-----------ISDNSTRSVIVSEGQTVYLYCYANGFPA 212 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~------~~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~ 212 (384)
+|++.|.|..........-.-.+|.+.. + +. +.........+.+|.++.|.|.+.|+..
T Consensus 81 eD~A~YyC~~~~~~~~tFG~GTkLeikr~~aa~~~s~~~~s~~a~ssGv~sqvqL~eSG~~lvkPG~Sl~LSC~aSG~tf 160 (259)
T 4f9l_D 81 EDIATYYCQQGHSYPYTFGGGTKLDIKRADAGGGGSGGGGSGGGGSGGGGSQVQLQESGAELVKPGASVKLSCKASGYTF 160 (259)
T ss_dssp GGCEEEEEEECSSSSCCBCCCCEECBCCC----------------------CCCEEEECCCEEESSSCEEEEEEEESSCG
T ss_pred hhCEEEEEeecCCCCCCccCCeEEEEeccccCccccccccccccccCCccccceEEeECCCEECCCCcEEEEEeeeCCCc
Confidence 9999999986432111011111222211 0 00 0000011234789999999999988653
Q ss_pred C--eEEEEeCC--Ccc------cccCc-----------eeE-e-----ccEEEEcCCCCCCCeEEEEEEE
Q psy16652 213 P--TISWRRDN--SAA------LSTGG-----------SIY-R-----GNILKIPNITKTDRGTYYCVAQ 255 (384)
Q Consensus 213 ~--~v~W~~~~--~~~------~~~~~-----------~~~-~-----~~~l~i~~~~~~d~G~Y~C~~~ 255 (384)
. .+.|.|.. +.+ ..... ... + .-.|.+.+++.+|...|.|.-.
T Consensus 161 s~y~~~WvRQaPGkgLEwvg~I~~~~g~t~Ya~svkGRfTISrD~s~nt~yLqm~sL~~eDTAvYYCAr~ 230 (259)
T 4f9l_D 161 TRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLTVDKSSRTTYIQLSSLTSEDSAVYYCSRE 230 (259)
T ss_dssp GGSCEEEEEECTTSCEEEEEEECTTTCCEEECTTSTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred ccCcEEEEEECCCCceEEEeEEeCCCCceEecHhhcCCEEEEEEccccEEEEEECCCChHHCEEEEEEEe
Confidence 3 58888732 211 11110 111 1 1258899999999999999654
No 479
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=89.76 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=61.5
Q ss_pred cceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCCCCCeeE
Q psy16652 80 QEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIY 159 (384)
Q Consensus 80 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 159 (384)
..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+ ..+.++.+.. ......|.|.+++.+|+|.|
T Consensus 4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y 66 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERL--------------ASQGRVQLEQ--AGARQVLRVQGARSGDAGEY 66 (84)
T ss_dssp CCEEECTTSCEEEECCCSC-CSTTCEEEETTEEC--------------CCCSSEEEEE--CSSCEEEEESSCSSTTCEEE
T ss_pred eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEc--------------cccccEEEee--cCCeEEEEecCCCCcccEEE
Confidence 3456789999999999865 77789999987652 3345666665 44567899999999999999
Q ss_pred EEEEEEccCcceeeeEEEEEecC
Q psy16652 160 KCEVIISLNNKVSAEVELIVRRP 182 (384)
Q Consensus 160 ~C~~~~~~~~~~~~~~~l~v~~~ 182 (384)
+|.+ +..+..+.|.|.+|
T Consensus 67 ~C~a-----~n~~~~a~l~V~eP 84 (84)
T 2lu7_A 67 LCDA-----PQDSRIFLVSVEEP 84 (84)
T ss_dssp EEEC-----TTTCEEEEEEECCC
T ss_pred EEEE-----CCEEEEEEEEEECC
Confidence 9987 23455667777653
No 480
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.6e-13 Score=93.89 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=78.1
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|+.++|.|.+.+.+.+.+.|++++..... ...++.+..+ ..+...|.|
T Consensus 5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~-------------~~~~~~~~~~-~~~~~~L~i 70 (110)
T 2dm2_A 5 SSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISP-------------KSDHYTIQRD-LDGTCSLHT 70 (110)
T ss_dssp CSCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCT-------------TCSSEEEEEC-TTCEEEEEE
T ss_pred CCCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCC-------------CCCeEEEEEC-CCcEEEEEE
Confidence 45678888888888999999999999999888889999997765211 1345555543 344568999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
.+++.+|+|.|+|.+.|.. +..+..+.|.|..++.
T Consensus 71 ~~v~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 71 TASTLDDDGNYTIMAANPQ-GRISCTGRLMVQAVNS 105 (110)
T ss_dssp SSCCTTTCSCCEEEEECTT-CCEEECCCEEEECCSC
T ss_pred CCCChhhCEEEEEEEEECC-CeEEEEEEEEEECCCC
Confidence 9999999999999998655 4456777788876654
No 481
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.44 E-value=8.1e-13 Score=94.09 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=71.8
Q ss_pred EecCeEEecCCCcccccCCcEEEEEEEecc--CCCeEEEEECCEEecCCCceeeeeeecc---CccccceEEEeecCCCC
Q psy16652 271 EFAPVITINRPRQGQALQYDAILECHVEAY--PPPAIVWIKDGVQIMNNQHYSVSHFATS---DEFSDTSLRVITIERRQ 345 (384)
Q Consensus 271 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d 345 (384)
..+|.+...+....+..|+.++|.|.+.+. |.+.+.|++++..+.............. .......|.|.+++.+|
T Consensus 8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 87 (112)
T 3so5_A 8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87 (112)
T ss_dssp CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence 456777777777888999999999999865 4579999999998865432111110000 00114689999999999
Q ss_pred CeEEEEEEEeCCcc-eEEEEEEEE
Q psy16652 346 FGQYACKAANKYGS-AQKEIELFD 368 (384)
Q Consensus 346 ~G~Y~C~a~n~~g~-~~~~~~l~v 368 (384)
+|.|+|.|.|..|. .+..+.|.|
T Consensus 88 ~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 88 EGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEEEEEEeCCCcEEEeEEEEEe
Confidence 99999999999998 446677765
No 482
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=2.6e-13 Score=95.57 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=70.9
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+.... ....|.|.+++.+|+|.|+|.
T Consensus 8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 81 (106)
T 2dlt_A 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVG-----RFHKLVIDDVRPEDEGDYTFV 81 (106)
T ss_dssp CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEET-----TEEEEEESSCCTTTCSCEEEE
T ss_pred CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeC-----CEEEEEECCCCcCCCEEEEEE
Confidence 5666667777889999999999999998877 9999999999877776654311 245799999999999999999
Q ss_pred EEeCCcceEEEEEEEEee
Q psy16652 353 AANKYGSAQKEIELFDRE 370 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~ 370 (384)
|.|..++ .+..|.|..
T Consensus 82 a~n~~~~--~~~~l~V~~ 97 (106)
T 2dlt_A 82 PDGYALS--LSAKLNFLE 97 (106)
T ss_dssp EETSCCC--CCBCEEEEC
T ss_pred EccCCce--EEEEEEEEE
Confidence 9998444 444455443
No 483
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.43 E-value=3.3e-12 Score=97.80 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=104.8
Q ss_pred CCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 73 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
..+.+.|+...|..|+++.|+|...-..+..+.|...-. +... +...+...|.|.+++
T Consensus 3 f~v~v~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~--------------------~~~~--~~g~~w~~l~l~~vs 60 (192)
T 1zxq_A 3 FEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLN--------------------KILL--DEQAQWKHYLVSNIS 60 (192)
T ss_dssp CCEEEESSEEEECTTEEEEEEEEESCSSCSEEEEECSSE--------------------EEEE--EEETTEEEEEEEEEC
T ss_pred cEEEEeCCCcEEeCCCcEEEEEECCCCCccccccccccC--------------------ceEE--cCCCCeEEEEEeccc
Confidence 356677888889999999999998543333344443110 0001 112334469999998
Q ss_pred CCCCeeEEEEEEEccCcceeeeEEEEEecCCccccCCCceEEeecCceEEEEEEecc-cCCC--eEEEEeCCCcccccC-
Q psy16652 153 ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP--TISWRRDNSAALSTG- 228 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~- 228 (384)
|.|.|.|.+. ..+......+.|.|+.+|......+....+.+|+.++|.|.+.+ +|.. .+.|++++..+....
T Consensus 61 --~~g~~~C~~~-c~~~~~~~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f 137 (192)
T 1zxq_A 61 --HDTVLQCHFT-CSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETF 137 (192)
T ss_dssp --SCEEEEEEEE-ETTEEEEEEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEEC
T ss_pred --cCCeeEEEEE-CCCcceEEEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeeccc
Confidence 7899999986 44456778899999998866554333345889999999999965 6665 489999877654321
Q ss_pred ---ceeEecc--EEEEcCCCCCCCe-EEEEEEEeCC
Q psy16652 229 ---GSIYRGN--ILKIPNITKTDRG-TYYCVAQNGV 258 (384)
Q Consensus 229 ---~~~~~~~--~l~i~~~~~~d~G-~Y~C~~~~~~ 258 (384)
....... .+.+ .++++|.| .|+|.|.-+.
T Consensus 138 ~~~~~~~~~~tv~~~~-~~~r~D~g~~~sC~A~L~L 172 (192)
T 1zxq_A 138 GKAAPAPQEATATFNS-TADREDGHRNFSCLAVLDL 172 (192)
T ss_dssp CSSTTCTTCEEEEEEE-ECCGGGGGCEEEEEEEEEC
T ss_pred ccccCcCcceEEEEEE-ecchhhCCceEEEEEEecC
Confidence 0000111 2333 45566666 8999999765
No 484
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Probab=99.43 E-value=2.2e-12 Score=101.15 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=96.0
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+..+.+.+|++|+|.|.+.+.....+.|+|.........+.... .......+|+.+..+.......|.|.+++.
T Consensus 4 ~V~Q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~-~~~~~~~~Rfs~~~~~~~~~~sL~I~~lq~ 82 (208)
T 4ei6_A 4 KVQQSPESLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIF-SDGDKKEGRFTAHLNKASLHVSLHIRDSQP 82 (208)
T ss_dssp CEEEECSEEEEETTCCEECEEEECCTTEEEEEEEEECTTSCCEEEEECC-SSEEEEETTEEEEEBTTTTBC-CEECSCCG
T ss_pred eEEEeCCEEEEECCCCEEEEEEEcCCCCceEEEEEeCCCCCcEEEEEEC-CCCcccCCcEEEEEcCCCCEEEEEEEeCcc
Confidence 4566677888999999999999976555689999976433222222222 222226688988876677788999999999
Q ss_pred CCCeeEEEEEEEcc----CcceeeeEEEEEecCCccccCCCceEEee--cCceEEEEEEeccc-CCCeEEEEeCCCcccc
Q psy16652 154 TDAGIYKCEVIISL----NNKVSAEVELIVRRPPIISDNSTRSVIVS--EGQTVYLYCYANGF-PAPTISWRRDNSAALS 226 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~----~~~~~~~~~l~v~~~~~~~~~~~~~~~~~--~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~ 226 (384)
+|+|.|.|.+.... ....-....|.|...... +.+.+... ....++|.|.+.+. |..++.|.+++..+..
T Consensus 83 ~DsG~Y~Ca~~~~~~~~~~~~fG~GT~L~V~~~~~~---~~PsVf~l~~~~~~~tl~Cl~~~f~P~i~v~~~~~~~~~~~ 159 (208)
T 4ei6_A 83 SDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQN---PDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 159 (208)
T ss_dssp GGCEEEEEEEEECCSSCCCCEECCCEEEEEECCCSS---CCCEEEEEEBSSCTTCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred cCCCcEEEEEecCCCccccccCCCCEEEEEeCcccC---CCCEEEEcccCCCCceEEEEeeccCCceEeeecccCcEEEe
Confidence 99999999986421 112233456777643111 11112111 11236799999884 4347999998876543
No 485
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.43 E-value=2.4e-12 Score=89.51 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=71.4
Q ss_pred CCCCeeeeCcc-eeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 71 RTPTISYISQE-QIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 71 ~~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
.+|.+...+.+ ..+.+|++++|.|.+. .+.+.+.|++++... ....++.+.. ......|.|.
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i--------------~~~~~~~~~~--~~~~~~L~I~ 68 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEI--------------RPSTKYIFEH--KGCQRILFIN 68 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBC--------------CCBTTEEEEE--ETTEEEEEEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEEC--------------CCCCCEEEEe--cCCEEEEEEc
Confidence 57788877776 5688999999999998 688899999987652 2234555554 3445689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCc
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 184 (384)
+++.+|+|.|+|.+ +.....+.|.|..+|.
T Consensus 69 ~~~~~D~G~Y~C~a-----g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 69 NCQMTDDSEYYVTA-----GDEKCSTELFVRSGPS 98 (100)
T ss_dssp EECTTTCCEEEEEE-----TTEEEEEEEEECCSCC
T ss_pred CCCcCcCEEEEEEE-----CCceEEEEEEEecCCC
Confidence 99999999999998 4466677888887653
No 486
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=94.44 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=72.1
Q ss_pred CCCCeeee---CcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 71 RTPTISYI---SQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 71 ~~p~~~~~---~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
.+|.+... +....+.+|+++.|.|.+.+.|.+.+.|++++... ...++.+.. ......|.
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l---------------~~~~~~~~~--~~~~~~L~ 82 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL---------------DTSRVHVRT--SDFDTVFF 82 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEEC---------------CCSSCEEEE--CSSEEEEE
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEEC---------------CCCcEEEEE--CCCeEEEE
Confidence 35555442 45677899999999999999898899999977542 123444443 44566799
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCC
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 183 (384)
|.+++.+|+|.|+|.+.|.. +..+..+.|.|..+|
T Consensus 83 i~~~~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 83 VRQAARSDSGEYELSVQIEN-MKDTATIRIRVVEKA 117 (118)
T ss_dssp ESSCCTTTCEEEEEEEECSS-CEECCEEEEEEECCC
T ss_pred ECCCChhcCEEEEEEEEeCC-CeEEEEEEEEEEcCC
Confidence 99999999999999998654 467778888887665
No 487
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.43 E-value=7e-13 Score=92.33 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=70.5
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++.... ...+...... ..+...|.|.+
T Consensus 4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~--------------~~~~~~~~~~-~~~~~~L~i~~ 68 (100)
T 2kdg_A 4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQ--------------SDDLHKMIVS-EKGLHSLIFEV 68 (100)
T ss_dssp EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEEC--------------CCSSSCEEEE-TTTEEEEEESS
T ss_pred CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECc--------------CCCcEEEEEc-CCCeEEEEECC
Confidence 45677777888889999999999999988888999999765321 1111111111 33446899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEecC
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 182 (384)
++.+|+|.|+|.+.|.. +..+..+.|.|...
T Consensus 69 v~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 69 VRASDAGAYACVAKNRA-GEATFTVQLDVLAK 99 (100)
T ss_dssp CCGGGCEEEEEEEEETT-EEEEEEEEEEEECC
T ss_pred CCcccCEEEEEEEEcCC-CeEEEEEEEEEEec
Confidence 99999999999998655 44677777877643
No 488
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.43 E-value=8e-13 Score=90.96 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=69.3
Q ss_pred CeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEEE
Q psy16652 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353 (384)
Q Consensus 274 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a 353 (384)
|.+...+....+.+|+.+.|.|.+ +.|.+.+.|+++|..+..+.++.+.... ....|.|.+++.+|+|.|+|.|
T Consensus 9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEG-----TRHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEET-----TEEEEEESSCCTTCCSEEEEEE
T ss_pred CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcC-----CEEEEEEcCCCcccCEEEEEEE
Confidence 344445566778999999999999 7888899999999999877776654311 2457999999999999999999
Q ss_pred EeCCcceEEEEEEEEee
Q psy16652 354 ANKYGSAQKEIELFDRE 370 (384)
Q Consensus 354 ~n~~g~~~~~~~l~v~~ 370 (384)
|....++.|.|.+
T Consensus 83 ----g~~~~~~~l~V~e 95 (95)
T 2k1m_A 83 ----GSSKVKFDLKVIE 95 (95)
T ss_dssp ----TTEEEEEEEEEEC
T ss_pred ----CCceEEEEEEEeC
Confidence 6677778887753
No 489
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=5e-13 Score=93.54 Aligned_cols=96 Identities=23% Similarity=0.283 Sum_probs=73.4
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCC-CccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 147 (384)
...++.+...+.+..+.+|++++|.|.+.+.+ +..+.|++++... ....++.+.. .....+|.
T Consensus 5 ~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i--------------~~~~r~~~~~--~~~~~~L~ 68 (104)
T 2eny_A 5 SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--------------GSSSRFQATR--QGRKYILV 68 (104)
T ss_dssp CCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBC--------------SBCSSCEEEE--ETTEEEEE
T ss_pred ccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEEC--------------CCCCCEEEEE--cCCEEEEE
Confidence 34566788888889999999999999998766 4479999987652 2334666654 34567899
Q ss_pred EeecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185 (384)
Q Consensus 148 i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~ 185 (384)
|.+++.+|+|.|+|.+. .......|.|..+|..
T Consensus 69 I~~v~~~D~G~Y~C~a~-----~~~~~a~L~V~~~p~~ 101 (104)
T 2eny_A 69 VREAAPSDAGEVVFSVR-----GLTSKASLIVRERSGP 101 (104)
T ss_dssp ECSCCTTTCSCEEEEET-----TEEEEECEEEECCCSS
T ss_pred ECCCCHHHCEEEEEEEC-----CeeEEEEEEEeCCCcC
Confidence 99999999999999873 3456778888877643
No 490
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.42 E-value=7.6e-13 Score=91.94 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEee
Q psy16652 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150 (384)
Q Consensus 71 ~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 150 (384)
.+|.+...+....+.+|++++|.|.+.+.|.+.+.|++++.... ....++.... .....+|.|.+
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~-------------~~~~~~~~~~--~~~~~~L~i~~ 68 (99)
T 1u2h_A 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVR-------------PDQRRFAEEA--EGGLCRLRILA 68 (99)
T ss_dssp EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECC-------------CBTTEEEEEC--GGGEEEEEESS
T ss_pred CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECC-------------CCCCEEEEEC--CCCEEEEEEcc
Confidence 46788888888899999999999999988888999999775421 1122333322 34456899999
Q ss_pred cCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 151 IQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 151 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus 69 ~~~~D~G~Y~C~a~N~~-g~~~~~~~l~V~ 97 (99)
T 1u2h_A 69 AERGDAGFYTCKAVNEY-GARQCEARLEVR 97 (99)
T ss_dssp CCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred CCcCCCEEEEEEEEECC-CceeEEEEEEEE
Confidence 99999999999998654 445666677765
No 491
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=91.21 Aligned_cols=94 Identities=21% Similarity=0.379 Sum_probs=72.9
Q ss_pred cCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 70 ~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++... ....++.+.. ......|.|.
T Consensus 4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~--------------~~~~~~~~~~--~~~~~~L~i~ 67 (99)
T 3puc_A 4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAI--------------TQGGKYKLSE--DKGGFFLEIH 67 (99)
T ss_dssp CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEEC--------------CSSSSEEEEE--ETTEEEEEEC
T ss_pred CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEEC--------------cCCCCEEEEE--eCCEEEEEEC
Confidence 34677888888889999999999999998888899999976542 2335565554 3455689999
Q ss_pred ecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
+++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus 68 ~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~ 97 (99)
T 3puc_A 68 KTDTSDSGLYTCTVKNSA-GSVSSSCKLTIK 97 (99)
T ss_dssp SCCGGGCEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred CCCcccCEEEEEEEEeCC-CcEeEEEEEEEE
Confidence 999999999999998654 445666666664
No 492
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=99.42 E-value=3.4e-12 Score=101.54 Aligned_cols=146 Identities=14% Similarity=0.128 Sum_probs=95.7
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...+..+.+.+|++|+|.|.+.+. ...+.|+|.........+.... ... ...+|+.+..+.......|.|.+++.
T Consensus 3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~-~~~-~~~~Rfs~~~~~~~~~~sLtI~~lq~ 79 (229)
T 3mbe_C 3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLA-QGT-KENGRLKSTFNSKERYSTLHIKDAQL 79 (229)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEES-SEE-EEETTEEEEEETTTTEEEEEECSCCS
T ss_pred cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeC-CCC-ccCCCEEEEECCCCCEEEEEEECCcc
Confidence 35566777889999999999999776 5689999976433222222222 211 45688888866677889999999999
Q ss_pred CCCeeEEEEEEEcc-Cc--ceeeeEEEEEecCCccccCCCceEE--eecCceEEEEEEecc-cCCCeEEEEeCCCccc
Q psy16652 154 TDAGIYKCEVIISL-NN--KVSAEVELIVRRPPIISDNSTRSVI--VSEGQTVYLYCYANG-FPAPTISWRRDNSAAL 225 (384)
Q Consensus 154 ~d~G~Y~C~~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~--~~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~ 225 (384)
+|+|.|.|.+.... .. .......|.|...... +.+.+. ......++|.|.+.+ +|..++.|.+++..+.
T Consensus 80 ~DSG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~---p~P~Vf~~~~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~ 154 (229)
T 3mbe_C 80 EDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQN---PEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFI 154 (229)
T ss_dssp TTCBEEEEEEECSSSTTCEEECCCCEEEEECCCSS---CCCEEEEEECTTCTTCEEEEEESCCSSSCCCCCCSSSEEE
T ss_pred cCCCCEEEEEEeCCCcccceeCCCEEEEEecccCC---CCCEEEEccCCCCCEEEEEEccccCCceEeEeeccCceEe
Confidence 99999999987421 11 1223346666542110 011111 112235899999988 4544799999886553
No 493
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=8.4e-14 Score=97.18 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=69.4
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCC----ceeeeeeeccCccccceEEEeecCCCCCeE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ----HYSVSHFATSDEFSDTSLRVITIERRQFGQ 348 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 348 (384)
+|.+...+....+.+|+.+.|.|.+.+.| +.+.|+++|..+.... ++.+.. . .....|.|.+++.+|+|.
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~--~---~~~~~L~I~~~~~~D~G~ 81 (101)
T 2edk_A 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKK--D---GKRHILIFSDVVQEDRGR 81 (101)
T ss_dssp CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEE--C---SSEEEEECSSCCGGGCSB
T ss_pred CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEE--C---CCEEEEEECCCChhhCEE
Confidence 45566666677889999999999999988 9999999999987666 334432 1 124579999999999999
Q ss_pred EEEEEEeCCcceEEEEEEEEeeee
Q psy16652 349 YACKAANKYGSAQKEIELFDRETQ 372 (384)
Q Consensus 349 Y~C~a~n~~g~~~~~~~l~v~~~~ 372 (384)
|+|.|.| ...+..|.|.++|
T Consensus 82 Y~C~a~n----~~~~~~l~V~~~P 101 (101)
T 2edk_A 82 YQVITNG----GQCEAELIVEEKQ 101 (101)
T ss_dssp EEEECSS----CEECCBEEEECCC
T ss_pred EEEEEcC----CcEEEEEEEeCCC
Confidence 9999987 3345667776653
No 494
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=7.3e-13 Score=92.76 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=75.7
Q ss_pred cCeEEecCCCcccccCCcEEEEEEEeccCCCeEEEEECCEEecCCCceeeeeeeccCccccceEEEeecCCCCCeEEEEE
Q psy16652 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352 (384)
Q Consensus 273 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~ 352 (384)
+|.+...+....+.+|+.+.|.|. .+.|.+.+.|++++..+..+.++.+... .....|.|.+++.+|+|.|+|.
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2dku_A 8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQE-----GLTLRLTISALEKADSDTYTCD 81 (103)
T ss_dssp CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEE-----TTEEEEEEESCCTTTCSEEEEE
T ss_pred CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeC-----CCEEEEEECCCCcccCEEEEEE
Confidence 455655666778899999999999 4889999999999999987777665421 1234799999999999999998
Q ss_pred EEeCCcceEEEEEEEEeeeecCCc
Q psy16652 353 AANKYGSAQKEIELFDRETQTGDE 376 (384)
Q Consensus 353 a~n~~g~~~~~~~l~v~~~~~~~~ 376 (384)
.|.....+.|.|.+.|.+|.
T Consensus 82 ----~g~~~~~~~l~V~~~p~~p~ 101 (103)
T 2dku_A 82 ----IGQAQSRAQLLVQGRRSGPS 101 (103)
T ss_dssp ----CSSCBCCEEEEEECSCCCCS
T ss_pred ----eCCceEEEEEEEeCccCCCC
Confidence 67777888999988876553
No 495
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.41 E-value=3.4e-13 Score=94.85 Aligned_cols=95 Identities=21% Similarity=0.254 Sum_probs=74.6
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
....|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++... ....++.+.. ......|.|
T Consensus 11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l--------------~~~~~~~~~~--~~~~~~L~I 74 (106)
T 1nct_A 11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVL--------------STSARHQVTT--TKYKSTFEI 74 (106)
T ss_dssp SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCC--------------TTCSSEEEEE--CSSEEEEEE
T ss_pred CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEEC--------------CCCCCEEEEE--CCCEEEEEE
Confidence 445678888899999999999999999999888899999977652 1234555554 345678999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEe
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 180 (384)
.+++.+|+|.|+|.+.|.. +..+..+.|.|.
T Consensus 75 ~~v~~~D~G~Y~C~a~N~~-G~~~~~~~l~V~ 105 (106)
T 1nct_A 75 SSVQASDEGNYSVVVENSE-GKQEAEFTLTIQ 105 (106)
T ss_dssp CCCCSSCCSEEEECCBCSS-CBCCEEEEEEEC
T ss_pred CcCCchhCEEEEEEEEeCC-CeEEEEEEEEEE
Confidence 9999999999999998554 446667777764
No 496
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.41 E-value=9.9e-13 Score=89.10 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCCeeeeCccee--eeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEe
Q psy16652 72 TPTISYISQEQI--KDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149 (384)
Q Consensus 72 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (384)
|+.|..+..+.. +.+|+++.|.|.+.+ |.+.+.|+|++..+ ..+.++.+.. .+...+|.|.
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i--------------~~~~~~~i~~--~~~~~~L~I~ 66 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEV--------------EESDFVVLEN--EGPHRRLVLP 66 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCC--------------CCCSSCEEEE--ETTEEEEEES
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEe--------------eeeeeeeEEe--cCCeEEEEeC
Confidence 455555555544 468999999999865 66789999988763 3345666655 3456789999
Q ss_pred ecCCCCCeeEEEEEE
Q psy16652 150 EIQETDAGIYKCEVI 164 (384)
Q Consensus 150 ~~~~~d~G~Y~C~~~ 164 (384)
+++.+|+|.|+|.+.
T Consensus 67 ~v~~~D~G~Y~C~a~ 81 (91)
T 2lvc_A 67 ATQPSDGGEFQCVAG 81 (91)
T ss_dssp SCCGGGCSEEEEECS
T ss_pred CCChhhcEEEEEEEc
Confidence 999999999999873
No 497
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Probab=99.41 E-value=7.8e-13 Score=105.25 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=105.8
Q ss_pred eeeeCcceeeeccCcEEEEEEeecCCC-ccEEEEEeCCCCCCcccceeccCce-eeeCCceEEeeCCCCceEEEEEeecC
Q psy16652 75 ISYISQEQIKDIAQTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGSL-IIHDSRFQLTTDPETSTYILSIKEIQ 152 (384)
Q Consensus 75 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~ 152 (384)
+...+..+.+.+|++|+|.|.+.+... ..+.|||.........+........ ....+|+.+..+.......|.|.+++
T Consensus 6 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~ 85 (211)
T 2ak4_D 6 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ 85 (211)
T ss_dssp EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred eEEeCCEEEEecCCCEEEEEEecCCcCceeEEEEEECCCCccEEEEEECCCcCccCcCCCEEEEEcCCCCEEEEEECccc
Confidence 455566778999999999999876433 3799999875432232222222211 12468898886667788999999999
Q ss_pred CCCCeeEEEEEEEcc--C-cceeeeEEEEEecCCccccCCCceEEe--ecCceEEEEEEecc-cCCCeEEEEeCCCcccc
Q psy16652 153 ETDAGIYKCEVIISL--N-NKVSAEVELIVRRPPIISDNSTRSVIV--SEGQTVYLYCYANG-FPAPTISWRRDNSAALS 226 (384)
Q Consensus 153 ~~d~G~Y~C~~~~~~--~-~~~~~~~~l~v~~~~~~~~~~~~~~~~--~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~ 226 (384)
.+|+|.|.|.+.... . ........|.|....... .+.+.+ ...+.++|.|.+.+ +|.+.+.+.........
T Consensus 86 ~~Dsg~Y~C~~~~~~~~~~~~~g~gt~L~V~~~~~~~---~P~V~~~~~~~~~vtL~Cl~~gf~P~~~v~~~~~~~~~~t 162 (211)
T 2ak4_D 86 VVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNP---DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 162 (211)
T ss_dssp GGGCEEEEEEEECSBTTSCCEECCCEEEEEECCCSSC---CCEEEEEBCCSSSCCEEEEEESCCTTCCCCCCSSSSCEEC
T ss_pred cccCceEEEEEEcCCCcceeeECCCEEEEEeCcCCCC---CCEEEEccCCCCceEEEEEeeeecCCcccccccccceEec
Confidence 999999999997431 1 112233466665332111 111211 12347899999987 67776622111110000
Q ss_pred cCcee---EeccEEEEcCCCCCCCeEEEEEEEeCC
Q psy16652 227 TGGSI---YRGNILKIPNITKTDRGTYYCVAQNGV 258 (384)
Q Consensus 227 ~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 258 (384)
..... .-.+. ++...+..+...|+|.+.+..
T Consensus 163 ~~~~~~~~~~~S~-t~~~~~w~~g~~~tC~V~~~~ 196 (211)
T 2ak4_D 163 DKCVLDMRSMDFK-SNSAVAWSNKSDFACANAFNN 196 (211)
T ss_dssp CCEEEEEGGGTEE-EEEEEEEECSTTCCTTSTTTT
T ss_pred Cchhccccccccc-cccHHHccCCCceEEEEecCC
Confidence 00000 01223 555556667778999887653
No 498
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=99.41 E-value=3.3e-12 Score=90.18 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred CeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEEeecCC
Q psy16652 74 TISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQE 153 (384)
Q Consensus 74 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 153 (384)
.+...|....+.+|++|+|.|.+.+.+.+.+.|++.........+.............|+.+.. .....+|.|.+++.
T Consensus 3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~--~~~~~~L~I~~v~~ 80 (108)
T 1jhl_L 3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG--SGTDFTLTISSLEP 80 (108)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--SSSEEEEEECSCCT
T ss_pred ceeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe--cCCEEEEEECCCCH
Confidence 3555677788999999999999988777899999976432222121111100001246777665 45677899999999
Q ss_pred CCCeeEEEEEEEc
Q psy16652 154 TDAGIYKCEVIIS 166 (384)
Q Consensus 154 ~d~G~Y~C~~~~~ 166 (384)
+|+|.|+|.+.+.
T Consensus 81 ~DsG~Y~C~~~n~ 93 (108)
T 1jhl_L 81 EDFAMYICQQHNE 93 (108)
T ss_dssp TCCSEEEEEECSS
T ss_pred HHCEEEEEEEccC
Confidence 9999999999754
No 499
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.41 E-value=1.9e-12 Score=89.12 Aligned_cols=80 Identities=23% Similarity=0.426 Sum_probs=66.5
Q ss_pred CCceEEeecCceEEEEEEecccCCCeEEEEeCCCcccccCceeEeccEEEEcCCCCCCCeEEEEEEEeCCCCceeeEEEE
Q psy16652 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268 (384)
Q Consensus 189 ~~~~~~~~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 268 (384)
.+....+.+|+.+.|.|.+.+.| +.+.|++++..+.........+..|.|.+++.+|+|.|+|.+.|..|.. ...+.|
T Consensus 15 ~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l 92 (95)
T 2ckn_A 15 EVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSV 92 (95)
T ss_dssp BBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEEE-EEEEEE
T ss_pred CcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCcE-EEEEEE
Confidence 35667899999999999998887 7999999988777665555567899999999999999999999987764 555555
Q ss_pred EE
Q psy16652 269 EV 270 (384)
Q Consensus 269 ~v 270 (384)
.|
T Consensus 93 ~V 94 (95)
T 2ckn_A 93 NV 94 (95)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 500
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.6e-13 Score=92.66 Aligned_cols=95 Identities=23% Similarity=0.345 Sum_probs=74.0
Q ss_pred ccCCCCeeeeCcceeeeccCcEEEEEEeecCCCccEEEEEeCCCCCCcccceeccCceeeeCCceEEeeCCCCceEEEEE
Q psy16652 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSI 148 (384)
Q Consensus 69 ~~~~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 148 (384)
...+|.+...+....+.+|++++|.|.+.+ +.+.+.|++++... ....++.+.. ......|.|
T Consensus 5 ~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~--------------~~~~~~~~~~--~~~~~~L~I 67 (103)
T 2edf_A 5 SSGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAI--------------RKSQKYDVVC--EGTMAMLVI 67 (103)
T ss_dssp CCCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBC--------------CCSSSEEEEE--ETTEEEEEE
T ss_pred CCCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEc--------------cCCCCEEEEE--CCCEEEEEE
Confidence 456788888888899999999999999986 66789999987652 2234555554 334668999
Q ss_pred eecCCCCCeeEEEEEEEccCcceeeeEEEEEecCCcc
Q psy16652 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185 (384)
Q Consensus 149 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~ 185 (384)
.+++.+|+|.|+|.+.| .+..+.|.|..+|..
T Consensus 68 ~~v~~~D~G~Y~C~a~n-----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 68 RGASLKDAGEYTCEVEA-----SKSTASLHVEEKASG 99 (103)
T ss_dssp SSCCTTTCSEEEEECSS-----CEEEEEEEECCCSSS
T ss_pred CCCCcccCEEEEEEEcc-----CCcEEEEEEeCCCCC
Confidence 99999999999999864 466778888776643
Done!