RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16652
(384 letters)
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 232 bits (594), Expect = 1e-74
Identities = 65/303 (21%), Positives = 108/303 (35%), Gaps = 24/303 (7%)
Query: 71 RTPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
R + + + + ++ C V A D + W + K L +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEK------------LSPN 48
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
R + + + + L+I DAGIYKC V + A V + + + + N+
Sbjct: 49 QQRISVVWNDD-DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFK-NA 106
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---IYRGNILKIPNITKTD 246
EG+ + C PTI W+ + + N L+I I KTD
Sbjct: 107 PTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 247 RGTYYCVAQNGVGRGM-KRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPP 303
GTY C + + ++I V V P + + L C + +P P
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEP 226
Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
+ W KDG I N + H + D + L + +++ +Y C A NK G
Sbjct: 227 TMSWTKDGEPIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAENKAGEQDAS 283
Query: 364 IEL 366
I L
Sbjct: 284 IHL 286
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 185 bits (470), Expect = 4e-56
Identities = 67/300 (22%), Positives = 109/300 (36%), Gaps = 30/300 (10%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
++ + + ++ C+ + + W G II R
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQ-------------GEKIISTQR 50
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
+ + S L+I DAGIY+C+ + A V L + +
Sbjct: 51 VVVQKEGVRSR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 107
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDRGT 249
+G+ + C + PAP +SW N + + + N L+I NI K+D G
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 167
Query: 250 YYCVAQN-GVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIV 306
Y C + G R+I V V P I++ + + + C P PAI
Sbjct: 168 YRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS 227
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
W ++G I N+ Y + S+T L V I G Y C+A NK G +K+ L
Sbjct: 228 WFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 280
Score = 118 bits (298), Expect = 5e-31
Identities = 34/183 (18%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNIL 237
++ S V +S G++ + C A G P + +ST + + + L
Sbjct: 4 LLQVT-ISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
I N D G Y C A + G+ + + +E+ Q DA + C V
Sbjct: 63 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 122
Query: 298 EAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
+ P PA+ W+ ++ +++ +++ ++ +L+++ I + G Y C+
Sbjct: 123 SSSPAPAVSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYRCEGRV 174
Query: 356 KYG 358
+
Sbjct: 175 EAR 177
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 171 bits (436), Expect = 3e-51
Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 33/301 (10%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P + ++ KC V I W K I
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKD--------------NREIRPGG 50
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR 191
+++T T+T L++ ++ + DAG Y C ++ K S +L V+ PP
Sbjct: 51 NYKMTLVENTAT--LTVLKVTKGDAGQYTC-YASNVAGKDSCSAQLGVQEPPRFIKKLEP 107
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-----LKIPNITKTD 246
S IV + + C G P + W +D + + + L++ N++ D
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDET-EIQESSKFRMSFVESVAVLEMYNLSVED 166
Query: 247 RGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAI 305
G Y C A N G + +++V+ PV +P + L+ D LEC ++ PP +
Sbjct: 167 SGDYTCEAHNAAGSASS-STSLKVKEPPVFR-KKPHPVETLKGADVHLECELQGTPPFQV 224
Query: 306 VWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
W KD ++ + + Y + E TS+ ++ ++ G+Y CKA+N GS
Sbjct: 225 SWHKDKRELRSGKKYKI-----MSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGS 279
Query: 366 L 366
+
Sbjct: 280 I 280
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 170 bits (433), Expect = 2e-49
Identities = 55/313 (17%), Positives = 106/313 (33%), Gaps = 40/313 (12%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
+ E+ + L C + A P+I W K + + + D
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLS-------GADPNADVTDFDR 153
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR----------R 181
R T P+ + Y + + +D Y C + ++ VE ++
Sbjct: 154 RI--TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKG 211
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GN 235
P+ ++ ++ G +YC P ++ ++ G
Sbjct: 212 EPVPQ-YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAIL 293
L D G Y C NGVG+ K ++ + V AP +P + ++ D +
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQ-KPEKVIVVKQGQDVTI 329
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
C V P P +VW + + + +V +D+ L + ++ G Y C+A
Sbjct: 330 PCKVTGLPAPNVVWSHNAKPL-SGGRATV---------TDSGLVIKGVKNGDKGYYGCRA 379
Query: 354 ANKYGSAQKEIEL 366
N++G E +
Sbjct: 380 TNEHGDKYFETLV 392
Score = 136 bits (343), Expect = 1e-36
Identities = 53/316 (16%), Positives = 84/316 (26%), Gaps = 44/316 (13%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
+ P + E + L+C ++ W K G
Sbjct: 4 DKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK--------------DGKSYN 49
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
E S L Q +D G Y+C S +
Sbjct: 50 WQEHNAALRKDEGS---LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPA- 105
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAALSTGG--------SIYRGNILKI 239
T EG+ L C N +P P I+W++ S A + L
Sbjct: 106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165
Query: 240 PNITKTDR---GTYYCVAQNGVGRGMKRNIAVEV---------EFAPVITINRPRQGQAL 287
+TK D Y C A+N + E+ + + A
Sbjct: 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAK 225
Query: 288 Q-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
++ C + P + K+G + N ++ + S L T
Sbjct: 226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT---SGKRLLFKTTLPEDE 282
Query: 347 GQYACKAANKYGSAQK 362
G Y C+ N G QK
Sbjct: 283 GVYTCEVDNGVGKPQK 298
Score = 118 bits (298), Expect = 2e-30
Identities = 37/198 (18%), Positives = 59/198 (29%), Gaps = 18/198 (9%)
Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSIYR-- 233
L V + P++ D V+ E L C G SW++D + +
Sbjct: 1 LPVDKYPVLKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDG-KSYNWQEHNAALR 58
Query: 234 --GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ----GQAL 287
L +D G Y C A+ G R I+ + + G+
Sbjct: 59 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGR-- 116
Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSV--SHFATSDEFSDTSLRVITIERR 344
L+C + AYP P I W K N + + + V +
Sbjct: 117 --PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVS 174
Query: 345 QFGQYACKAANKYGSAQK 362
+Y C A N +
Sbjct: 175 DIYKYVCTAKNAAVDEEV 192
Score = 113 bits (285), Expect = 2e-28
Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 17/194 (8%)
Query: 67 ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS 125
+ + P Y+S++ + + C ++ + K G
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKN--------------GK 251
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
+ + ++T TS L K D G+Y CEV + ++L V P
Sbjct: 252 DVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKY 311
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
+ ++V +GQ V + C G PAP + W + LS G + + L I +
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK-PLSGGRATVTDSGLVIKGVKNG 370
Query: 246 DRGTYYCVAQNGVG 259
D+G Y C A N G
Sbjct: 371 DKGYYGCRATNEHG 384
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 168 bits (427), Expect = 1e-48
Identities = 72/303 (23%), Positives = 119/303 (39%), Gaps = 36/303 (11%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
++ + T LKC V D P I W K + L DS
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQ-----QDLNPIPG------DS 169
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST- 190
R + + L I +Q D+G+Y+C + + E E+ + P +
Sbjct: 170 RVVVL-----PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYF 224
Query: 191 ----RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITK 244
+VI EG+ L C +G+P P+ +W R S+ G+ L I N+T
Sbjct: 225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTD 284
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPP 303
D GTY CV + + + V P +N P A + D EC V P P
Sbjct: 285 DDSGTYTCVVTYKNEN-ISASAELTVLVPPWF-LNHPSNLYAYESMDIEFECAVSGKPVP 342
Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
+ W+K+G ++ + ++ + ++LR++ + + G Y C A N+ G+AQ
Sbjct: 343 TVNWMKNGDVVIPSDYFQIV--------GGSNLRILGVVKSDEGFYQCVAENEAGNAQSS 394
Query: 364 IEL 366
+L
Sbjct: 395 AQL 397
Score = 152 bits (386), Expect = 1e-42
Identities = 71/312 (22%), Positives = 115/312 (36%), Gaps = 38/312 (12%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
+R+ + + L CS + PVI W K L + M
Sbjct: 19 RRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG-----LILALGM------ 67
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPII 185
D R Q + + + D G+Y+CE SL + +S +++V P
Sbjct: 68 -DDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEA--SLGDSGSIISRTAKVMVAGPLRF 124
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN----SAALSTGGSIYRGNILKIPN 241
+ T S+ G TV L C G P PTI W+++ + + L+I
Sbjct: 125 L-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISR 183
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT-----INRPRQGQALQ-YDAILEC 295
+ D G Y C A+N V + P + + RP A++ DA+LEC
Sbjct: 184 LQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 296 HVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
V YPPP+ W++ I + ++ YS+ ++L + + G Y C
Sbjct: 244 CVSGYPPPSFTWLRGEEVIQLRSKKYSL--------LGGSNLLISNVTDDDSGTYTCVVT 295
Query: 355 NKYGSAQKEIEL 366
K + EL
Sbjct: 296 YKNENISASAEL 307
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 171 bits (434), Expect = 3e-48
Identities = 66/313 (21%), Positives = 118/313 (37%), Gaps = 33/313 (10%)
Query: 61 SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLP 119
S ++L+ + P + ++ KC V I W K + +
Sbjct: 186 SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDN-----REIR 239
Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVEL 177
+++T T+T L++ ++ + DAG Y C N K S +L
Sbjct: 240 PG---------GNYKMTLVENTAT--LTVLKVTKGDAGQYTCYAS---NVAGKDSCSAQL 285
Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---- 233
V+ PP S IV + + C G P + W +D + +
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345
Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAIL 293
+L++ N++ D G Y C A N G + +++V+ PV D L
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHL 404
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
EC ++ PP + W KD ++ + + Y + E TS+ ++ ++ G+Y CKA
Sbjct: 405 ECELQGTPPFQVSWHKDKRELRSGKKYKI-----MSENFLTSIHILNVDSADIGEYQCKA 459
Query: 354 ANKYGSAQKEIEL 366
+N GS +
Sbjct: 460 SNDVGSDTCVGSI 472
Score = 167 bits (425), Expect = 5e-47
Identities = 64/313 (20%), Positives = 114/313 (36%), Gaps = 30/313 (9%)
Query: 61 SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPI 120
S ++ + + P+ + ++ + + +C + ++ V W K
Sbjct: 90 SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK------------ 137
Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIV 179
G L+ D+ Q + +T L I + ++ G Y C L SA++ L
Sbjct: 138 --DGELLKDDANLQTSFIHNVAT--LQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSE 193
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GN 235
P D SV ++ G++ C+ G I+W +DN G
Sbjct: 194 HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAIL 293
L + +TK D G Y C A N G+ + + V+ P I + + ++
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRF-IKKLEPSRIVKQDEHTRY 311
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
EC + P ++W KD +I + + +S S L + + G Y C+A
Sbjct: 312 ECKIGGSPEIKVLWYKDETEIQESSKFRMSF-----VESVAVLEMYNLSVEDSGDYTCEA 366
Query: 354 ANKYGSAQKEIEL 366
N GSA L
Sbjct: 367 HNAAGSASSSTSL 379
Score = 161 bits (408), Expect = 1e-44
Identities = 59/302 (19%), Positives = 106/302 (35%), Gaps = 39/302 (12%)
Query: 75 ISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRF 133
I + +I + +C + + W K + I S+F
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIG-GSPEIKVLWYK--------------DETEIQESSKF 338
Query: 134 QLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNST 190
+++ + L + + D+G Y CE N S+ L V+ PP+
Sbjct: 339 RMSFVESVAV--LEMYNLSVEDSGDYTCEAH----NAAGSASSSTSLKVKEPPVFRKKP- 391
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNITKT 245
V +G V+L C G P +SW +D L +G + I N+
Sbjct: 392 HPVETLKGADVHLECELQGTPPFQVSWHKDKRE-LRSGKKYKIMSENFLTSIHILNVDSA 450
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPA 304
D G Y C A N VG ++ ++ P + + + L+ +E P +
Sbjct: 451 DIGEYQCKASNDVGSD-TCVGSITLKAPPRFVK-KLSDISTVVGEEVQLQATIEGAEPIS 508
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
+ W KD +I+ + S + +L+ E G+Y C+ N+ G+ +
Sbjct: 509 VAWFKDKGEIVRESD----NIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFA 564
Query: 365 EL 366
L
Sbjct: 565 TL 566
Score = 159 bits (405), Expect = 3e-44
Identities = 60/309 (19%), Positives = 109/309 (35%), Gaps = 44/309 (14%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P + I + L+C V + + W K + +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK--------------EHTKLRSAPA 51
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR---RPPIIS 186
+++ ++ L I ++ +D G Y C+ N V++ L+++ PP +
Sbjct: 52 YKMQFKNNVAS--LVINKVDHSDVGEYTCKA----ENSVGAVASSAVLVIKERKLPPSFA 105
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-----LKIPN 241
+ V + G V C NG +SW +D L ++ I L+I
Sbjct: 106 R-KLKDVHETLGFPVAFECRINGSEPLQVSWYKDGE-LLKDDANLQTSFIHNVATLQILQ 163
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQ-YDAILECHV 297
++ G Y C A N +G + + + E P + +P +CHV
Sbjct: 164 TDQSHVGQYNCSASNPLGT-ASSSAKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHV 221
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
P I W KD +I +Y ++ + +L V+ + + GQY C A+N
Sbjct: 222 TGTAPIKITWAKDNREIRPGGNYKMTL-----VENTATLTVLKVTKGDAGQYTCYASNVA 276
Query: 358 GSAQKEIEL 366
G +L
Sbjct: 277 GKDSCSAQL 285
Score = 126 bits (318), Expect = 4e-32
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 12/191 (6%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNIL 237
PP + V + G+ + L C +G P I+W ++++ S + L
Sbjct: 5 PPYFIE-PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
I + +D G Y C A+N VG + ++ P + + EC
Sbjct: 64 VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
+ P + W KDG + ++ + S + +L+++ ++ GQY C A+N
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSF-----IHNVATLQILQTDQSHVGQYNCSASN 178
Query: 356 KYGSAQKEIEL 366
G+A +L
Sbjct: 179 PLGTASSSAKL 189
Score = 107 bits (268), Expect = 2e-25
Identities = 27/196 (13%), Positives = 60/196 (30%), Gaps = 29/196 (14%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P L+C +Q + W K +
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQ-GTPPFQVSWHK--------------DKRELRSGK 429
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNS 189
++++ ++ ++ + I + D G Y+C+ N+ + + ++ PP
Sbjct: 430 KYKIMSENFLTS--IHILNVDSADIGEYQCKAS---NDVGSDTCVGSITLKAPPRFVKKL 484
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIPNITK 244
+ G+ V L G +++W +D + +I+ L+
Sbjct: 485 -SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 245 TDRGTYYCVAQNGVGR 260
+ G Y C +N G
Sbjct: 544 ANAGKYTCQIKNEAGT 559
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 165 bits (420), Expect = 8e-48
Identities = 66/290 (22%), Positives = 106/290 (36%), Gaps = 39/290 (13%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
Q L C W+ + + RF + + L
Sbjct: 118 QGMVLLCGPPPHSGELSYAWIFNE-------------YPSYQDNRRF--VSQETGN---L 159
Query: 147 SIKEIQETDAGIYKCEV--IISLNNKVSAEVELIVR-------RPPIISDNSTRSVIVSE 197
I +++++D G Y C V ++ + + LI+R P I +V +
Sbjct: 160 YIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEK 219
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQN 256
G TV L C+A G P PTI WRR + ++ ++ N IL+IPN + D G+Y CVA+N
Sbjct: 220 GTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAEN 279
Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316
G+ + P A++ EC P P W+K+G ++
Sbjct: 280 SRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLT 338
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ +L + + G Y C A NK+G EL
Sbjct: 339 RDRIQI---------EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Score = 138 bits (349), Expect = 2e-37
Identities = 63/296 (21%), Positives = 94/296 (31%), Gaps = 46/296 (15%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+ L C P + W T + + D R+ + + S
Sbjct: 24 KKVKLSCE---VKGNPKPHIRWKLNGT-------DVDIGM-----DFRYSV---VDGSLL 65
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I + + DAG Y+C S VS E +L + +V V GQ + L
Sbjct: 66 INNPN--KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123
Query: 205 CYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKTDRGTYYCVAQNGVGRG 261
C + +W + + L I + K+D G Y CV N V
Sbjct: 124 CGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH 183
Query: 262 MK---------RNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIK-D 310
RN V E+ P I + P A + LEC P P I+W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243
Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
G I S+ L + ++ G Y C A N G + +L
Sbjct: 244 GKPIARKARR---------HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 111 bits (280), Expect = 7e-28
Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 16/189 (8%)
Query: 182 PPIISD--NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNIL 237
P+ + + SE + V L C G P P I W+ + + Y L
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 238 KIPNITKT-DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
I N KT D GTY C+A N G + R ++ + + +L C
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 296 HV-EAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
+ WI + +N+ + +L + +E+ G Y C
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQE--------TGNLYIAKVEKSDVGNYTCVV 176
Query: 354 ANKYGSAQK 362
N + +
Sbjct: 177 TNTVTNHKV 185
Score = 108 bits (271), Expect = 1e-26
Identities = 49/204 (24%), Positives = 72/204 (35%), Gaps = 28/204 (13%)
Query: 60 LSFLISLASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKM 115
L + P I E + T L+C A P ++W + D
Sbjct: 192 LILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECF---ALGNPVPTILWRRAD----- 243
Query: 116 EPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEV 175
G I +R S IL I Q+ DAG Y+C + K A+
Sbjct: 244 --------GKPIARKARRHK------SNGILEIPNFQQEDAGSYECVAE-NSRGKNVAKG 288
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
+L P + V+ ++V+ C ANG P PT W ++ L+
Sbjct: 289 QLTFYAQPNWV-QIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347
Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
L I + +D G Y CVA+N G
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHG 371
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 158 bits (400), Expect = 5e-47
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 7/190 (3%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTIS--WRRDNSAALSTGGSIYRGNIL 237
+ P I S +I V L C + W ++ L+
Sbjct: 1 QNEPRIV-TSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-VELTATRKNASNMEY 58
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
+I D G Y+CV K N +EV+ AP IT ++ + + DA++ C
Sbjct: 59 RINKPRAEDSGEYHCVYHFVSAP--KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS 116
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANK 356
YP P +W K + S F ++ + T L ++ ++ + G+Y C A N
Sbjct: 117 VGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 357 YGSAQKEIEL 366
GSA L
Sbjct: 177 IGSASVSTVL 186
Score = 101 bits (254), Expect = 8e-26
Identities = 43/205 (20%), Positives = 71/205 (34%), Gaps = 42/205 (20%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI---WMKMDTAKKMEPLPISMSGSL 126
Q P I + I+D L+C++ + + ++ W K +G
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLT-SSSHTLMYSYWTK--------------NGVE 45
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPI 184
+ + S I + + D+G Y C + A + V+ P
Sbjct: 46 LTATRK-------NASNMEYRINKPRAEDSGEYHCVY----HFVSAPKANATIEVKAAPD 94
Query: 185 ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---------GN 235
I+ RS +EGQ +YC + G+P P WR+ + +
Sbjct: 95 IT-GHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYT 153
Query: 236 ILKIPNITKT-DRGTYYCVAQNGVG 259
L I N+ T D G Y C A N +G
Sbjct: 154 ELNIVNLQITEDPGEYECNATNSIG 178
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 161 bits (408), Expect = 5e-47
Identities = 44/298 (14%), Positives = 89/298 (29%), Gaps = 32/298 (10%)
Query: 88 QTADLKCSVQYADD-----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDP--- 139
+ L C +Q + + W + + M + G R +
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT-QGPSYSESKRLEFVAARLGA 74
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
E L + ++ D G Y C + S ++ L V P + V ++
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGEP 133
Query: 200 TVYLYCYA-NGFPAPTISWRRDN-------SAALSTGGSIYRGNILKIPNITKTDRGTYY 251
C + G P I+W D G++ ++ + ++ D
Sbjct: 134 VPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT 193
Query: 252 CVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQAL-QYDAILECHVEAYPPPA-IVWI 308
C ++ + + + V + P ++I+ L Q +A L C + P P W
Sbjct: 194 CKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWS 253
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ L + +++ C N G+ Q E+ +
Sbjct: 254 TTMGPLPPFA-----------VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTV 300
Score = 89.8 bits (222), Expect = 2e-20
Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 40/218 (18%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSA------- 223
+++V+ P V G +V L CY ++W R +
Sbjct: 1 DVVVQAPT--------QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH 52
Query: 224 ---------------ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV 268
+ G+ R L++ + D G Y C+ +I +
Sbjct: 53 QTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWL 112
Query: 269 EVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
V P T + + + C PP I W D + N
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF---L 169
Query: 328 SDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEI 364
S + TSL ++ + G CK ++ + +
Sbjct: 170 SGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 156 bits (395), Expect = 3e-46
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 13/182 (7%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDR 247
+G+ + C + PAP +SW N + + + N L+I NI K+D
Sbjct: 10 SPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDE 69
Query: 248 GTYYCVAQN-GVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPA 304
G Y C + G R+I V V P I++ + + + C P PA
Sbjct: 70 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
I W ++G I N+ Y + S+T L V I G Y C+A NK G +K+
Sbjct: 130 ISWFRNGKLIEENEKYILKG-------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 182
Query: 365 EL 366
L
Sbjct: 183 FL 184
Score = 107 bits (269), Expect = 5e-28
Identities = 45/193 (23%), Positives = 74/193 (38%), Gaps = 25/193 (12%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
T + Q + A++ C V + P + W+ ++ D+
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLY-------HNEEVTTIS-----DN 49
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPPIISD-NS 189
RF + + L I I ++D GIY+CE + + ++ +IV PP IS
Sbjct: 50 RFAMLAN-----NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNILKIPNITKTD 246
+ + G+ + C A+G P P ISW R+ + L + NI +D
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFRNGK-LIEENEKYILKGSNTELTVRNIINSD 163
Query: 247 RGTYYCVAQNGVG 259
G Y C A N G
Sbjct: 164 GGPYVCRATNKAG 176
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 166 bits (421), Expect = 1e-45
Identities = 75/312 (24%), Positives = 111/312 (35%), Gaps = 26/312 (8%)
Query: 61 SFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLP 119
S + L P I QE+ + + LKC + P I W
Sbjct: 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWELDGK-------K 469
Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
I+ + + Q T L+I + D G+YKC S +L V
Sbjct: 470 IANNDRYQVG----QYVTVNGDVVSYLNITSVHANDGGLYKCIAK-SKVGVAEHSAKLNV 524
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNIL 237
P I + G+T+ + C G+P +I W RDN AL ++ L
Sbjct: 525 YGLPYIR--QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDN-RALPINRKQKVFPNGTL 581
Query: 238 KIPNITK-TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
I N+ + +D+ TY CVA+N G + ++ V+V P I +G A L C
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHC 641
Query: 296 HVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
V P I W DG I + + S + L + +E G + C A
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR----RGSVLTIEAVEASHAGNFTCHAR 697
Query: 355 NKYGSAQKEIEL 366
N G Q L
Sbjct: 698 NLAGHQQFTTPL 709
Score = 166 bits (421), Expect = 2e-45
Identities = 73/308 (23%), Positives = 110/308 (35%), Gaps = 36/308 (11%)
Query: 68 SSQRTPTISYISQEQIKDIA--QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSG 124
S P + +++ +K + T L C Q PV W K E
Sbjct: 242 ISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFI-----EGTTR---- 291
Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRR 181
L + + L IK+ D+G Y C V NN S E L V
Sbjct: 292 -----KQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVV----NNSVGGESVETVLTVTA 342
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
P + V G+ C G P T+SW +D A + L+I +
Sbjct: 343 PLSAKI-DPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV------LRIES 395
Query: 242 ITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQY--DAILECHVE 298
+ K D+G Y C +N + + F P I + Q + ++ L+C
Sbjct: 396 VKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP-PVIRQAFQEETMEPGPSVFLKCVAG 454
Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
P P I W DG +I NN Y V + T + + L + ++ G Y C A +K G
Sbjct: 455 GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVG 514
Query: 359 SAQKEIEL 366
A+ +L
Sbjct: 515 VAEHSAKL 522
Score = 156 bits (396), Expect = 3e-42
Identities = 54/286 (18%), Positives = 97/286 (33%), Gaps = 29/286 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+T + C V ++W + + + + ++ + L
Sbjct: 542 ETLIVTCPVAGYPIDSIVWER--------------DNRALPINRKQKVFPN-----GTLI 582
Query: 148 IKEIQ-ETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
I+ ++ +D Y C +E+ V P I + GQ + L+C
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 207 ANGFPAP-TISWRRDNSAALSTGGSIYR-----GNILKIPNITKTDRGTYYCVAQNGVGR 260
G P I W D A G G++L I + + G + C A+N G
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702
Query: 261 GMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
+ + V P + + A DA +EC + +P P + W K Y
Sbjct: 703 -QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT--PGEY 759
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + + +L V I++ G Y C+A N GS + +
Sbjct: 760 KDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 150 bits (381), Expect = 4e-40
Identities = 61/298 (20%), Positives = 98/298 (32%), Gaps = 49/298 (16%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+A +KC + V W + E +D ++ + +
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDE-----EENYFP----GAEYDGKYLVL-----PSG 199
Query: 145 ILSIKEIQETDA-GIYKCEVI--ISLNNKVSAEVELIV-------RRPPIISDNSTRSVI 194
L I+E+ D Y+C ++ ++SA +V P ++S
Sbjct: 200 ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259
Query: 195 VSEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGGSIYRGNILKIPNITKTDRG 248
S T+ L C A G+P P W + A + L I + D G
Sbjct: 260 YSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 319
Query: 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308
Y CV N VG + V I+ P Q A+ C P + W+
Sbjct: 320 KYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWM 378
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
KDG I S++ LR+ ++++ G Y C N SA+ EL
Sbjct: 379 KDGKAI---------------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 421
Score = 135 bits (342), Expect = 5e-35
Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 17/242 (7%)
Query: 146 LSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
+++ + ++ +I+ + ++A ++ P+ T + S +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKTDR------GTYYCVAQ 255
C A+G P P I W R + A+ + + L P D Y C+A+
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY---PPPAIVWIKDGV 312
N G + R++ V A + ++ A+++C + ++ + W D
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERR-QFGQYACKAANKYGSAQKEIELFDRET 371
+ + L + + + Y C+ ++ + R
Sbjct: 181 ENYFPGAEYDGKYLV---LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLV 237
Query: 372 QT 373
T
Sbjct: 238 IT 239
Score = 107 bits (268), Expect = 2e-25
Identities = 46/204 (22%), Positives = 76/204 (37%), Gaps = 27/204 (13%)
Query: 80 QEQIKDIAQTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTT 137
+E + Q L CSV D P + W G I D +
Sbjct: 627 EEGPAQVGQYLTLHCSVP-GGDLPLNIDWTL--------------DGQAISEDLGITTSR 671
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSE 197
+ +L+I+ ++ + AG + C +L L V PP T ++
Sbjct: 672 VGRRGS-VLTIEAVEASHAGNFTC-HARNLAGHQQFTTPLNVYVPPRWILEPT-DKAFAQ 728
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-------ILKIPNITKTDRGTY 250
G + C A+GFP P ++W++ + + + L + NI KT+ G Y
Sbjct: 729 GSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY 788
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAP 274
C A NG+G G+ I + V+
Sbjct: 789 LCEAINGIGSGLSAVIMISVQAHH 812
Score = 50.3 bits (120), Expect = 8e-07
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P ++ A ++C V W K E + S ++ + +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
L + IQ+T+ G Y CE I + + +SA + + V+
Sbjct: 775 -------------LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 157 bits (399), Expect = 1e-44
Identities = 66/290 (22%), Positives = 95/290 (32%), Gaps = 39/290 (13%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
CS W+ + P I RF T L
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNE-----FPNFIPAD------GRRFVSQTTGN-----L 160
Query: 147 SIKEIQETDAGIYKCEV----------IISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
I + + +D G Y C + S +++S E + P I
Sbjct: 161 YIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYAL 220
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256
GQ V L C+A G P P I WR+ + + T + +L I N+ D GTY C A+N
Sbjct: 221 TGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAEN 278
Query: 257 GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMN 316
GR + + P + D C P PA+ W++DG + +
Sbjct: 279 IKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS 337
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
V S LR + G Y C A NK+G+ EL
Sbjct: 338 QNRIEV---------SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 132 bits (334), Expect = 2e-35
Identities = 60/298 (20%), Positives = 87/298 (29%), Gaps = 50/298 (16%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+ L C A P W T L + DSR++L
Sbjct: 23 EKVTLTCR---ARANPPATYRWKMNGT-----ELKMGP-------DSRYRL---VAGDLV 64
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I + ++ DAG Y+C + VS E L S V ++EG V
Sbjct: 65 ISNP--VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFT 122
Query: 205 CYAN-GFPAPTISWRRDNSAALSTGGS----IYRGNILKIPNITKTDRGTYYCVAQNGVG 259
C +PA + W + L I +D G Y C A + +
Sbjct: 123 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 182
Query: 260 RGMKR----------NIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWI 308
K ++AP I P AL LEC P P I W
Sbjct: 183 FITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR 242
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
K + S+ L + ++ G Y C+A N G + +
Sbjct: 243 KLDGSQTSKWL-----------SSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Score = 110 bits (277), Expect = 2e-27
Identities = 35/192 (18%), Positives = 62/192 (32%), Gaps = 12/192 (6%)
Query: 182 PPIISD--NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNI 236
P+ + T S + V L C A P T W+ + + S YR G++
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILEC 295
+ + D G+Y CVA N G + R ++ F + + + + C
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123
Query: 296 HVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
YP + W+ + + +L + E G Y+C A
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFV-----SQTTGNLYIAKTEASDLGNYSCFAT 178
Query: 355 NKYGSAQKEIEL 366
+ K +
Sbjct: 179 SHIDFITKSVFS 190
Score = 101 bits (254), Expect = 3e-24
Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 37/204 (18%)
Query: 63 LISLASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKMEPL 118
L + + Q P+I + Q L+C A P + W K+D
Sbjct: 197 LAAEDARQYAPSIKAKFPADTYALTGQMVTLECF---AFGNPVPQIKWRKLD-------- 245
Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEV 175
GS +S +L I+ + D G Y+CE N + + +
Sbjct: 246 -----GSQTSKW---------LSSEPLLHIQNVDFEDEGTYECEA----ENIKGRDTYQG 287
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
+I+ P + G + C A+G P P + W RD S G
Sbjct: 288 RIIIHAQPDWL-DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG 346
Query: 236 ILKIPNITKTDRGTYYCVAQNGVG 259
L+ + D G Y CVA+N G
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHG 370
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 156 bits (394), Expect = 1e-44
Identities = 55/321 (17%), Positives = 103/321 (32%), Gaps = 33/321 (10%)
Query: 67 ASSQRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPIS 121
R P+ + + L CS V W K K +
Sbjct: 8 QQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYN 67
Query: 122 MSGSLIIHDS---RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
S + + R + P + + + ++ D G+Y CE +++ L
Sbjct: 68 PSMGVSVLAPYRERVEFL-RPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126
Query: 179 VRRPPIISDNSTRSVI----VSEGQTVYLYCY-ANGFPAPTISWRRDN------SAALST 227
V P T++V+ + + + C ANG P +SW +
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
G++ + ++ + + + C+ + R K ++ + V++ P +TI L
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYL 245
Query: 288 Q-YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
Q D L C +A PP W + + T I
Sbjct: 246 QRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ----------NRTLFFKGPINYSL 295
Query: 346 FGQYACKAANKYGSAQKEIEL 366
G Y C+A N G+ ++E+
Sbjct: 296 AGTYICEATNPIGTRSGQVEV 316
Score = 104 bits (260), Expect = 2e-25
Identities = 31/197 (15%), Positives = 55/197 (27%), Gaps = 17/197 (8%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ C+ V+ + + E I + S
Sbjct: 151 KVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS-------------RYR 197
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
+ +E C V ++ + L V+ P ++ + V L C A
Sbjct: 198 LVPSREAHQQSLACIVN-YHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA 256
Query: 208 NGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
+ P T W N +L G + I + GTY C A N +G +
Sbjct: 257 DANPPATEYHWTTLNG-SLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR-SGQV 314
Query: 267 AVEVEFAPVITINRPRQ 283
V + A + +
Sbjct: 315 EVNITEAAALEHHHHHH 331
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 155 bits (392), Expect = 5e-44
Identities = 49/298 (16%), Positives = 92/298 (30%), Gaps = 37/298 (12%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYIL 146
T +L C+ W + K + ++ + R + + L
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
IK ++ D+ Y CEV ++ EV+L+V SD + +GQ++ L
Sbjct: 70 IIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSD-----THLLQGQSLTLTLE 119
Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
+ +P++ R G +I G L + + D GT+ C ++ I
Sbjct: 120 SPPGSSPSVQCRSPR------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKI 172
Query: 267 AVEV-EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV-----------------WI 308
+ V F +I ++G+ +++ L VE +
Sbjct: 173 DIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLK 232
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
V + T L + G K G +E+ L
Sbjct: 233 NKEVSVKRVTQDPKLQMGKKLPLHLT-LPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Score = 99.9 bits (248), Expect = 1e-23
Identities = 27/195 (13%), Positives = 53/195 (27%), Gaps = 45/195 (23%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-------------------- 232
V+ +G TV L C A+ + W+ N + +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 233 -RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDA 291
L I N+ D TY C ++ + + + + QGQ
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEE--VQLLVFGLTANSDTHL---LQGQ----SL 114
Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
L P++ + + +L V +E + G + C
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTC 159
Query: 352 KAANKYGSAQKEIEL 366
+ +I++
Sbjct: 160 TVLQNQKKVEFKIDI 174
Score = 68.3 bits (166), Expect = 6e-13
Identities = 31/241 (12%), Positives = 70/241 (29%), Gaps = 62/241 (25%)
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTV--- 201
LS+ +++ D+G + C V+ KV +++++V ++ V EG+ V
Sbjct: 143 TLSVSQLELQDSGTWTCTVL-QNQKKVEFKIDIVVLAFQ----KASSIVYKKEGEQVEFS 197
Query: 202 --------------YLYCYANGFPAP----TISWRRDN----SAALSTGGSIYRGNILKI 239
L+ A + T + + + L +
Sbjct: 198 FPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHL 257
Query: 240 ----PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
G + G+ + + + + V A + N L C
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRATQLQKN-------------LTC 303
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
V P ++ + N+ VS + + + + G + C ++
Sbjct: 304 EVWGPTSPKLMLSL----KLENKEAKVS----------KREKAVWVLNPEAGMWQCLLSD 349
Query: 356 K 356
Sbjct: 350 S 350
Score = 66.4 bits (161), Expect = 3e-12
Identities = 27/207 (13%), Positives = 53/207 (25%), Gaps = 32/207 (15%)
Query: 64 ISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMS 123
I S+ ++ + + +L + W+ K E ++
Sbjct: 185 IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAE-RASSSKSWITF-DLKNKEVSVKRVT 242
Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ L Q +G + K+ EV L+V R
Sbjct: 243 QDPKLQMG------KKLPLHLTLPQALPQYAGSGNLTLALEAKTG-KLHQEVNLVVMRAT 295
Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPN 241
L C G +P +S + +N K
Sbjct: 296 --------------QLQKNLTCEVWGPTSPKLMLSLKLENK-------EAKVSKREKAVW 334
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAV 268
+ + G + C+ + ++ NI V
Sbjct: 335 VLNPEAGMWQCLLSDSGQVLLESNIKV 361
Score = 31.7 bits (71), Expect = 0.40
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
+ +AG+++C + S + + ++++
Sbjct: 330 EKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVL 362
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 151 bits (384), Expect = 2e-42
Identities = 61/312 (19%), Positives = 102/312 (32%), Gaps = 45/312 (14%)
Query: 74 TISYISQEQIKDIA----QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
+E + + L+C+ PVI WM I
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSS-------------MEPIT 160
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIV------ 179
D R + + L + D Y C + + L V
Sbjct: 161 QDKRVSQGHNGD-----LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGV 215
Query: 180 --RRPPIISDNST-RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN- 235
R P + T S +V G + L C A+G P P I+W + S N
Sbjct: 216 AERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK 275
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILE 294
L+I N+++ D G Y+C+A N +G ++ I+V V+ AP P+ D L
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLD-EPKNLILAPGEDGRLV 333
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
C P P + W+ +G + + E + ++ + Y C +
Sbjct: 334 CRANGNPKPTVQWMVNGEPLQSAPPNPNR------EVAGDTIIFRDTQISSRAVYQCNTS 387
Query: 355 NKYGSAQKEIEL 366
N++G +
Sbjct: 388 NEHGYLLANAFV 399
Score = 137 bits (346), Expect = 7e-37
Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 42/307 (13%)
Query: 79 SQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQL 135
+++ I D ++C A P W + I+ D R +
Sbjct: 24 AKDHIVDPRDNILIECE---AKGNPAPSFHWTRNSR-----FFNIAK-------DPRVSM 68
Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
T E G Y+C +S + L V + P+ + V+V
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Query: 196 SEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKTD-RGTYY 251
EG + L C G P+P I W + ++ S L N+ D + Y
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYS 188
Query: 252 CVAQNGVGRGMKRN--IAVEVEFAPVI-----TINRPRQGQALQY-----DAILECHVEA 299
C A+ +++ ++V + + P+ + Q D +LEC
Sbjct: 189 CNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASG 248
Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
P P I W K G + +++ + + +LR+ + G+Y C A+NK GS
Sbjct: 249 VPTPDIAWYKKGGDLPSDKAKFEN--------FNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 360 AQKEIEL 366
+ I +
Sbjct: 301 IRHTISV 307
Score = 117 bits (294), Expect = 1e-29
Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 22/206 (10%)
Query: 171 VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS 230
+ ++ + +PP I+ S + IV + + C A G PAP+ W R++
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 231 IYR----GNILKIPNIT----KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
L I + + G Y C A+N G + I ++V +P+
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWP-KENL 123
Query: 283 QGQALQY--DAILECHV-EAYPPPAIVWIKDGVQ-IMNNQHYSVSHFATSDEFSDTSLRV 338
+Q L+C+ P P I W+ ++ I ++ S + L
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ--------GHNGDLYF 175
Query: 339 ITIERR-QFGQYACKAANKYGSAQKE 363
+ + Y+C A + ++
Sbjct: 176 SNVMLQDMQTDYSCNARFHFTHTIQQ 201
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 145 bits (367), Expect = 4e-42
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----G 234
+ + P+I+ +V + C +P P ISW R+ + + Y G
Sbjct: 4 LPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKIL-IKLFDTRYSIRENG 61
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE 294
+L I ++ +D G Y C A NGVG ++ A++V+ P IT A+L
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
C P P++ WIK + N +V SLR+ +++ GQY C A
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVL--------ESGSLRIHNVQKEDAGQYRCVAK 173
Query: 355 NKYGSAQ 361
N G+A
Sbjct: 174 NSLGTAY 180
Score = 113 bits (285), Expect = 4e-30
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 25/206 (12%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
+ P I+ + + + A C+ + YP + W + + +
Sbjct: 5 PKAPVITTPLETVDALVEEVATFMCA---VESYPQPEISWTRNK-----ILIKLF----- 51
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
D+R+ + + + L+I ++++D GIY C + V + L V+ P I+
Sbjct: 52 ---DTRYSIRENGQL----LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG-SIYRGNILKIPNITKT 245
+V + EG L C G P P++SW + +SA ++ L+I N+ K
Sbjct: 105 RP-PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE 271
D G Y CVA+N +G + + +EVE
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVE 189
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 155 bits (392), Expect = 4e-42
Identities = 51/279 (18%), Positives = 85/279 (30%), Gaps = 37/279 (13%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
L C + + +W + + R QL+ D T L+
Sbjct: 305 DAVALTCEPE-IQNTTYLWWV--------------NNQSLPVSPRLQLSNDNRT----LT 345
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
+ + D G Y+C + L+ S V L V P S G + L C+A
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHA 405
Query: 208 NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKR-NI 266
P SW D G L I NIT+ + G Y C A N +
Sbjct: 406 ASNPPAQYSWLID-------GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVK 458
Query: 267 AVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSH 324
+ V + ++ C EA +W +G + + +S+
Sbjct: 459 TITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQLSN 517
Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
+ +L + + R Y C N + + +
Sbjct: 518 -------GNRTLTLFNVTRNDARAYVCGIQNSVSANRSD 549
Score = 150 bits (380), Expect = 2e-40
Identities = 55/287 (19%), Positives = 92/287 (32%), Gaps = 29/287 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII-----HDSRFQLTTDPETS 142
+ L + W K + + + G+ + R + +
Sbjct: 15 KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN---- 70
Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR-RPPIISDNSTRSVIVSEGQTV 201
L I+ I + D G Y VI S A + V P S +S S V + V
Sbjct: 71 -ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129
Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGR 260
C A + W + S +S + GN L + N+T+ D +Y C QN V
Sbjct: 130 AFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSA 189
Query: 261 GMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQH 319
++ + V + P TI+ + L CH + PP W +G + Q
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE 249
Query: 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + ++ G Y C+A N +
Sbjct: 250 LFIPNITVNNS----------------GSYTCQAHNSDTGLNRTTVT 280
Score = 150 bits (380), Expect = 2e-40
Identities = 54/295 (18%), Positives = 95/295 (32%), Gaps = 37/295 (12%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
+ + + + C + D +W + + LP+S
Sbjct: 109 ELPKPSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWVNN-----QSLPVS-------- 154
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
R QL+ L++ + D YKCE ++ + S V L V P S
Sbjct: 155 -PRLQLSNG----NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTIS 209
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGT 249
+ G+ + L C+A P SW + + ST L IPNIT + G+
Sbjct: 210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-------ELFIPNITVNNSGS 262
Query: 250 YYCVAQNGVGRGMK-RNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIV 306
Y C A N + + V P ++ L C E +
Sbjct: 263 YTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTT-YL 321
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
W + + + +S+ + +L ++++ R G Y C N+
Sbjct: 322 WWVNNQSLPVSPRLQLSN-------DNRTLTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 145 bits (367), Expect = 1e-38
Identities = 51/236 (21%), Positives = 79/236 (33%), Gaps = 28/236 (11%)
Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVR---RPPIISDNSTRS 192
+ T L I I E ++G+Y C+ NN S + P S +S S
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQA----NNSASGHSRTTVKTITVSAELPKPSISSNNS 476
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYY 251
V + V C + W S +S + GN L + N+T+ D Y
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYV 536
Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKD 310
C QN V + ++V + P I P L + L CH + P P W +
Sbjct: 537 CGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRIN 596
Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
G+ + Q ++ ++ G YAC +N I
Sbjct: 597 GIPQQHTQVLFIAKITPNNN----------------GTYACFVSNLATGRNNSIVK 636
Score = 112 bits (281), Expect = 4e-27
Identities = 38/194 (19%), Positives = 62/194 (31%), Gaps = 26/194 (13%)
Query: 66 LASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGS 125
S++ + + + C + A + +W +G
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPE-AQNTTYLWWV--------------NGQ 505
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
+ R QL+ L++ + DA Y C + S++ S V L V P
Sbjct: 506 SLPVSPRLQLSNG----NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDT 561
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
S G + L C++ P+P SWR + T +L I IT
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-------VLFIAKITPN 614
Query: 246 DRGTYYCVAQNGVG 259
+ GTY C N
Sbjct: 615 NNGTYACFVSNLAT 628
Score = 100 bits (249), Expect = 4e-23
Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 30/194 (15%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--------------------SI 231
V+EG+ V L + SW + + I
Sbjct: 8 PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREII 67
Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQGQALQYD 290
Y L I NI + D G Y + V P +I+ D
Sbjct: 68 YPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKD 127
Query: 291 -AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
C E +W + + + +S+ + +L + + R Y
Sbjct: 128 AVAFTCEPETQDAT-YLWWVNNQSLPVSPRLQLSN-------GNRTLTLFNVTRNDTASY 179
Query: 350 ACKAANKYGSAQKE 363
C+ N + + +
Sbjct: 180 KCETQNPVSARRSD 193
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 156 bits (394), Expect = 5e-42
Identities = 64/345 (18%), Positives = 114/345 (33%), Gaps = 63/345 (18%)
Query: 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYP--VIWMKMD-----------------T 111
+ S IS T L C+V YA P + W
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTV-YAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480
Query: 112 AKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV 171
+ G I ++ Q + + ++ + +YKCE + NKV
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAV----NKV 536
Query: 172 ---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228
+ V R P I+ + +E ++V L+C A+ ++W + L
Sbjct: 537 GRGERVISFHVTRGPEIT--LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIH 594
Query: 229 GSIYRGN------------------------ILKIPNITKTDRGTYYCVAQNGVGRG--- 261
I+++ N + D+G Y C+AQ+ +
Sbjct: 595 VGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC 654
Query: 262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
+ R + V AP IT N Q ++ + C PPP I+W KD ++ +
Sbjct: 655 VVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIV 714
Query: 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + +L + + + G Y C+A + G A+ E
Sbjct: 715 LKD-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
Score = 154 bits (390), Expect = 1e-41
Identities = 57/314 (18%), Positives = 110/314 (35%), Gaps = 43/314 (13%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L C+ + + + + + K + L+ D + Q ++ + L+
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQH------KKLVNRDLKTQSGSEMKKFLSTLT 293
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST--RSVIVSEGQTVYLYC 205
I + +D G+Y C L + V P ++ S V + G+ V +
Sbjct: 294 IDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPA 352
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK-R 264
G+P P I W ++ L + +I G++L I +++ D G Y + N + + +
Sbjct: 353 KYLGYPPPEIKWYKNGI-PLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSH 411
Query: 265 NIAVEVEFAPVI---TINRPRQGQALQYDAILECHVEAYPPPA-IVWIKDGVQIMNNQH- 319
+++ V P I ++ P L C V A PPP I W + N+
Sbjct: 412 VVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Query: 320 ---------------------------YSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
+ + FA + + T ++ Y C+
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
Query: 353 AANKYGSAQKEIEL 366
A NK G ++ I
Sbjct: 532 AVNKVGRGERVISF 545
Score = 136 bits (342), Expect = 4e-35
Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 49/299 (16%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+T + C ++ + + + + G+ I DS+ T
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPD------GNRISWDSKKGFT----------- 186
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVIVSEGQTVYLY 204
I + AG+ CE I+ + + + ++V R + + + + +S G+ + L
Sbjct: 187 IPSYMISYAGMVFCEAKIN-DESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 245
Query: 205 CYANGFPAPTISWRRD--------------NSAALSTGGSIYRGNILKIPNITKTDRGTY 250
C A I + + + S + L I +T++D+G Y
Sbjct: 246 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 305
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ---ALQYDAILECHVEAYPPPAIVW 307
C A +G+ K + V V P + + + + YPPP I W
Sbjct: 306 TCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKW 364
Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
K+G+ + +N + L ++ + R G Y N ++ +
Sbjct: 365 YKNGIPLESNHTI----------KAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVV 413
Score = 127 bits (321), Expect = 2e-32
Identities = 45/312 (14%), Positives = 85/312 (27%), Gaps = 39/312 (12%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P +S T + C Q + W+ +
Sbjct: 32 PRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPN-------------NQSGSEQRV 74
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPII---- 185
L+I ++ D G YKC V + R P I
Sbjct: 75 EVTECSDGLFCKTLTIPKVIGNDTGAYKCFY----RETDLASVIYVYVQDYRSPFIASVS 130
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGG--SIYRGNILKIPNI 242
+ + ++ +TV + C + ++ R + G S IP+
Sbjct: 131 DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY 190
Query: 243 TKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQY--DAILECHVEA 299
+ G +C A+ I V V + + P G L +L C
Sbjct: 191 MISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT-----SLRVITIERRQFGQYACKAA 354
I + + + V+ + S+ +L + + R G Y C A+
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 310
Query: 355 NKYGSAQKEIEL 366
+ + + +
Sbjct: 311 SGLMTKKNSTFV 322
Score = 102 bits (254), Expect = 1e-23
Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 28/231 (12%)
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
++ ++ C S + + P +S + + T+ + C
Sbjct: 1 MQSKVLLAVALWLCVE----TRAASVGLPSVSLDLPRLSIQKD-ILTIKANTTLQITCRG 55
Query: 208 NGFPAPTISWRRDN-----SAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262
W + ++ L IP + D G Y C +
Sbjct: 56 Q--RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLA-S 112
Query: 263 KRNIAVEVEFAPVITINRPRQGQALQY-----DAILECHVEAYPPPAIV--WIKDGVQIM 315
+ V+ +P I + G ++ C + + +
Sbjct: 113 VIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172
Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ S S + + G C+A S Q + +
Sbjct: 173 DGNRISWD--------SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 58.6 bits (141), Expect = 1e-09
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 10/123 (8%)
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVW 307
+ CV G+ +++++ P ++I + + C +W
Sbjct: 10 ALWLCVETRAASVGLPS-VSLDL---PRLSIQKDILTIKANTTLQITC--RGQRDLDWLW 63
Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
+ + SD +L + + G Y C ++ + +
Sbjct: 64 PNNQSGSEQRVEVTE----CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Query: 368 DRE 370
D
Sbjct: 120 DYR 122
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 147 bits (373), Expect = 7e-42
Identities = 56/306 (18%), Positives = 97/306 (31%), Gaps = 37/306 (12%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
+ P I E + T L+C + V W P P
Sbjct: 1 AGSIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDG-------PPSP--------- 40
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
T + S+ ILS + G Y+C SA + L V+ P +
Sbjct: 41 -----HWTLYSDGSSSILSTNNATFQNTGTYRC-TEPGDPLGGSAAIHLYVKDPARPWNV 94
Query: 189 STRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKT 245
+ V+V E Q L C + +S R L S + I
Sbjct: 95 LAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFI 154
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQ-YDAILECHVEAY 300
Y C A G + M +I ++V+ P +T+ P + ++ A + C +
Sbjct: 155 QSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEAAQIVCSASSV 213
Query: 301 PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
V+++ + S H + +L + ++ + G Y+C A+N G
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVL--TLNLDQVDFQHAGNYSCVASNVQGKH 271
Query: 361 QKEIEL 366
+
Sbjct: 272 STSMFF 277
Score = 36.5 bits (84), Expect = 0.009
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 28/101 (27%)
Query: 274 PVITINRP----RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
PVI + P + G L C ++ W + H+++
Sbjct: 5 PVIEPSVPELVVKPGA----TVTLRCVGNG----SVEWDGP-----PSPHWTL------- 44
Query: 330 EFSDTSLRVITIERRQF---GQYACKAANKYGSAQKEIELF 367
+SD S +++ F G Y C I L+
Sbjct: 45 -YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 143 bits (363), Expect = 1e-41
Identities = 45/191 (23%), Positives = 72/191 (37%), Gaps = 10/191 (5%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILK 238
P I + + G+ + C A+G P P ISW R+ + L
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK-LIEENEKYILKGSNTELT 61
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHV 297
+ NI +D G Y C A N G ++ ++V P I + + + L C
Sbjct: 62 VRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHII--QLKNETTYENGQVTLVCDA 118
Query: 298 EAYPPPAIVWIK--DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
E P P I W + DG + +SL + ++ G+Y C+AA+
Sbjct: 119 EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAAS 178
Query: 356 KYGSAQKEIEL 366
+ G QK + L
Sbjct: 179 RIGGHQKSMYL 189
Score = 100 bits (250), Expect = 4e-25
Identities = 43/204 (21%), Positives = 68/204 (33%), Gaps = 40/204 (19%)
Query: 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHD 130
++ S + + C P I W + +G LI +
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFR--------------NGKLIEEN 48
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISD 187
++ L L+++ I +D G Y C NK + L V P I
Sbjct: 49 EKYILKGS----NTELTVRNIINSDGGPYVCRA----TNKAGEDEKQAFLQVFVQPHII- 99
Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGNI---------- 236
++ E V L C A G P P I+W+R + + G G I
Sbjct: 100 -QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSS 158
Query: 237 LKIPNITKTDRGTYYCVAQNGVGR 260
L I ++ +D G Y C A + +G
Sbjct: 159 LHIKDVKLSDSGRYDCEAASRIGG 182
Score = 42.5 bits (100), Expect = 6e-05
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P I + E + L C + + P I W + + + + D
Sbjct: 96 PHIIQLKNETTYE-NGQVTLVCDAE-GEPIPEITWKRAV-----DGFTFTEGDKSL--DG 146
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIV 179
R ++ +S+ L IK+++ +D+G Y CE +++ + L +
Sbjct: 147 RIEVKGQHGSSS--LHIKDVKLSDSGRYDCEAA----SRIGGHQKSMYLDI 191
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 146 bits (369), Expect = 2e-41
Identities = 51/305 (16%), Positives = 90/305 (29%), Gaps = 35/305 (11%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLII 128
+ P I E + + +T L+C + V W
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVS----NGSVEWDG-------------------- 36
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
T DPE+ L+ + + G Y+C + S + L V+ P +
Sbjct: 37 -PISPYWTLDPESPGSTLTTRNATFKNTGTYRC-TELEDPMAGSTTIHLYVKDPAHSWNL 94
Query: 189 STRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGG--SIYRGNILKIPNITKT 245
+ V V EGQ L C + ++S R+ + I
Sbjct: 95 LAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVL 154
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQYDAILECHVEAYP 301
D TY C I ++V P I + + + A + C
Sbjct: 155 DSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAE 214
Query: 302 PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
V +K G + S + +L + ++ + G Y+C A+N G+
Sbjct: 215 VGFNVILKRGDTKLEIPLNSDFQDNYYKKVR--ALSLNAVDFQDAGIYSCVASNDVGTRT 272
Query: 362 KEIEL 366
+
Sbjct: 273 ATMNF 277
Score = 38.0 bits (88), Expect = 0.004
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
APVI + P L C ++ W E
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD----------PESP 49
Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
++L + G Y C + I L+
Sbjct: 50 GSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY 84
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 151 bits (383), Expect = 2e-41
Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 31/287 (10%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ ++C + + + W + + L + + + +
Sbjct: 243 EPLWIRCKAVHVNHGFGLTWELEN-----KALEEGNYFEMSTYSTNRTMIRI-----LFA 292
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS-DNSTRSVIVSEGQTVYLYC 205
+ + D G Y C + S + + I+ NS+ + + +
Sbjct: 293 FVSSVARNDTGYYTCSS----SKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
+P +W + + G + K G Y A+N +
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKM 407
Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY---SV 322
+ + P + + A Q C + YP P+ W K + N V
Sbjct: 408 FTLNIRRKPQVLA----EASASQ----ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGV 459
Query: 323 SHFATSDEFS---DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + + +S + E + C A N G++ + I L
Sbjct: 460 WNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILL 506
Score = 136 bits (343), Expect = 8e-36
Identities = 47/317 (14%), Positives = 101/317 (31%), Gaps = 29/317 (9%)
Query: 49 MSVAGPSIIVA-LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWM 107
+ + +V+ + A ++ Y + D++ + L+ V + +W+
Sbjct: 24 VGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV 83
Query: 108 KMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL 167
S + F L S + I ++ ET AG Y +
Sbjct: 84 F--------------KHSSLNCQPHFDLQNRGVVS---MVILKMTETQAGEYLLFIQSEA 126
Query: 168 NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALST 227
N + + +R + + E Q L C + P P + W +S S
Sbjct: 127 TN-YTILFTVSIRNTLLYTLRRP-YFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESC 183
Query: 228 GGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI--NRPRQGQ 285
+ + + C A+N +GR R +++ P T+ + G+
Sbjct: 184 KEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGE 243
Query: 286 ALQYDAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSD-EFSDTSLRVITIER 343
L + C + W + + ++ +S ++T+ V ++ R
Sbjct: 244 PLW----IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299
Query: 344 RQFGQYACKAANKYGSA 360
G Y C ++ +
Sbjct: 300 NDTGYYTCSSSKHPSQS 316
Score = 120 bits (302), Expect = 3e-30
Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 32/231 (13%)
Query: 150 EIQETDAGIYKCEVIISLNNKVSAE----------------VELIVRRPPIISDNSTRSV 193
E D + KC +I NN S L + + + +V
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE--AAAV 58
Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKTDRGTY 250
V ++ L + + W +S+ + + I +T+T G Y
Sbjct: 59 EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEY 118
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKD 310
Q+ V + + T+ RP + ++ L C E+ P P + W+
Sbjct: 119 LLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLC 176
Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
Q + + + C A N+ G
Sbjct: 177 DSQG---------ESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Score = 88.2 bits (218), Expect = 3e-19
Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 50/220 (22%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
I+ + + +I Q + SV+ YP W + P G
Sbjct: 325 GFINATNSSEDYEIDQYEEFCFSVR-FKAYPQIRCTWTFSR-----KSFPCEQKGL---- 374
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
+ Y +S + G Y + L +RR P
Sbjct: 375 -----------DNGYSISKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKP------ 416
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI------------- 236
+++E C+++G+P P+ +W++ + + + I G
Sbjct: 417 ---QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWV 473
Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
+ C A N +G I +
Sbjct: 474 SSSTLNMSEAIKGFLVKCCAYNSLGTS-CETILLNSPGPF 512
Score = 72.0 bits (176), Expect = 6e-14
Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 11/145 (7%)
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
K + + +Y V+++ G A+ + + + + L+ V
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSA-SITLQVLV 72
Query: 298 EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
+A + +W+ + H+ + + S+ ++ + Q G+Y ++
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVV------SMVILKMTETQAGEYLLFIQSEA 126
Query: 358 GSAQKEIELFDRETQTGDETFPIFY 382
+ + R T P F
Sbjct: 127 TNYTILFTVSIRNTLLYTLRRPYFR 151
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 151 bits (383), Expect = 2e-41
Identities = 48/325 (14%), Positives = 94/325 (28%), Gaps = 41/325 (12%)
Query: 63 LISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPI 120
L + + P +S + + + C+++ W + ++ K++
Sbjct: 202 LKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIK-DVSSSVYSTWKRENSQTKLQEKYN 260
Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
S + L+I + D+G++ C + + L V
Sbjct: 261 S-----------WHHGDFNYERQATLTISSARVNDSGVFMCYAN-NTFGSANVTTTLEVV 308
Query: 181 RPPIISDNSTRS--VIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTG--------- 228
I+ + V V++G+ V L FP P W N
Sbjct: 309 DKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENE 368
Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
+I + L + + T+ GTY + N V V P I
Sbjct: 369 SNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAI-AFNVYVNTKPEILTYDRLV----- 422
Query: 289 YDAILECHVEAYPPPAIVW-------IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
+ +L+C +P P I W + ++ +++ + +
Sbjct: 423 -NGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSS 481
Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
+ G CKA N G
Sbjct: 482 AFKHNGTVECKAYNDVGKTSAYFNF 506
Score = 151 bits (382), Expect = 2e-41
Identities = 55/313 (17%), Positives = 97/313 (30%), Gaps = 39/313 (12%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
+ + + ++C + + +K G + D R
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLT-DPEVTNYSLKGC------------QGKPLPKDLR 161
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR----RPPIISDN 188
F DP+ I S+K + C V + +S + L VR P++S
Sbjct: 162 F--IPDPKAGIMIKSVK--RAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVS-V 216
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA---------LSTGGSIYRGNILK 238
S S ++ EG+ + C + +W+R+NS + R L
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY----DAILE 294
I + D G + C A N G +EV I I P + + L
Sbjct: 277 ISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINI-FPMINTTVFVNDGENVDLI 334
Query: 295 CHVEAYPPP-AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
EA+P P WI + S+ + L + ++ + G Y
Sbjct: 335 VEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLV 394
Query: 354 ANKYGSAQKEIEL 366
+N +A +
Sbjct: 395 SNSDVNAAIAFNV 407
Score = 138 bits (349), Expect = 1e-36
Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 49/306 (16%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P+I + I + L C+ V W + E
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNEN--------------- 77
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
++ + T+ G Y C + +S + + VR P + RS
Sbjct: 78 ---------KQNEWITEKAEATNTGKYTCTN----KHGLSNSIYVFVRDPAKLFLVD-RS 123
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKT-DRGT 249
+ E + C S + L + I ++ + R
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 250 YYCVAQNGVGRGMKRNIAVEV----EFAPVITINRP----RQGQALQYDAILECHVEAYP 301
+C + ++V + PV+++++ R+G+ + C ++
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFT----VTCTIKDVS 239
Query: 302 PPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSA 360
W ++ Q + Y+ H + +L + + G + C A N +GSA
Sbjct: 240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSA 299
Query: 361 QKEIEL 366
L
Sbjct: 300 NVTTTL 305
Score = 105 bits (262), Expect = 7e-25
Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 36/219 (16%)
Query: 155 DAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP 211
A + C +++ L + V PP I + +IV G + L C G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPG-- 62
Query: 212 APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
+ W + + + N T+ G Y C ++G+ +I V V
Sbjct: 63 --FVKWTFEILDETNEN----KQNEWITEKAEATNTGKYTCTNKHGLS----NSIYVFVR 112
Query: 272 FAPVITINRP----RQGQALQYDAILECHVEAYPPPAIVWIK--DGVQIMNNQHYSVSHF 325
+ + ++ D ++ C + P +K G + + +
Sbjct: 113 DPAKLFLVDRSLYGKEDN----DTLVRCPLTD-PEVTNYSLKGCQGKPLPKDLRFIPD-- 165
Query: 326 ATSDEFSDTSLRVITIERRQF-GQYACKAANKYGSAQKE 363
+ + +++R C + S E
Sbjct: 166 ------PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSE 198
Score = 97.4 bits (242), Expect = 2e-22
Identities = 37/209 (17%), Positives = 58/209 (27%), Gaps = 39/209 (18%)
Query: 88 QTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
+ DL + A P W+ M+ + + + + S
Sbjct: 329 ENVDLIVEYE-AFPKPEHQQWIYMN---------RTFTDKWEDYPKSENESNIRYVSE-- 376
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC 205
L + ++ T+ G Y V S N + + V P I + L C
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEI-------LTYDRLVNGMLQC 428
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIYRGNI----------------LKIPNITKTDRGT 249
A GFP PTI W S+ ++ I + GT
Sbjct: 429 VAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
C A N VG+ + I
Sbjct: 489 VECKAYNDVGKT-SAYFNFAFKGNNKEQI 516
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 144 bits (365), Expect = 8e-40
Identities = 65/297 (21%), Positives = 102/297 (34%), Gaps = 48/297 (16%)
Query: 88 QTADLKCSVQ--YADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+A +KC + AD V+ W + E +D ++ + E
Sbjct: 119 NSAVIKCLIPSFVADFVEVVSWHTDE-----EENYFP----GAEYDGKYLVLPSGE---- 165
Query: 145 ILSIKEIQETDA-GIYKCEVIISLNN--KVSAEVELIVRRP------PIISDNSTRSVIV 195
L I+E+ D Y+C L ++SA +V P + + +
Sbjct: 166 -LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
Query: 196 SEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGGSIYRGNILKIPNITKTDRGT 249
T+ L C A GFPAP+ W + A + L I + D G
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGK 284
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIK 309
Y CV N VG + V I+ P Q A+ C P + W+K
Sbjct: 285 YLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Query: 310 DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
DG I + S++ LR+ ++++ G Y C N SA+ EL
Sbjct: 344 DGKAIGH---------------SESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 122 bits (307), Expect = 1e-31
Identities = 50/323 (15%), Positives = 91/323 (28%), Gaps = 47/323 (14%)
Query: 70 QRTPTISYISQEQIKDIA-QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM--- 122
Q+ P +I A+++C A P +IW++ D + +
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECK---ASGNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
G L+ R + QE A +Y C + +S +V +
Sbjct: 58 DGKLVFPPFR--------------AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGF---PAPTISWRRDNSAALSTGG------SIYR 233
V G + + C F +SW D G +
Sbjct: 104 QYYEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 234 GNILKIPNITKTD-RGTYYCVAQNGVGRGMKRNIAVEV--------EFAPVITINRPRQG 284
L I + D +Y C ++ + + + AP +
Sbjct: 163 SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPL 222
Query: 285 QALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343
+ + + L C + +P P+ W K Q ++ + +L +
Sbjct: 223 ELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRV---KQVSGTLIIKDAVV 279
Query: 344 RQFGQYACKAANKYGSAQKEIEL 366
G+Y C N G E L
Sbjct: 280 EDSGKYLCVVNNSVGGESVETVL 302
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 139 bits (351), Expect = 1e-39
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 16/202 (7%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------- 233
+ +S V + E V L C +GF +P + W+ D +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 234 -----GNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQAL 287
+ ++T+ D GTY C+ G + + + V P +
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATS--DEFSDTSLRVITIERR 344
A+L C + PP W KDG+ + N + + +S + L +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 345 QFGQYACKAANKYGSAQKEIEL 366
G+Y+C+A N YG+ +
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203
Score = 100 bits (250), Expect = 5e-25
Identities = 42/218 (19%), Positives = 68/218 (31%), Gaps = 31/218 (14%)
Query: 72 TPTISYISQEQIKDIA--QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
+++ S E I L C+ + V W L +
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCA---YSGFSSPRVEWKFDQ--GDTTRLVCYNNKIT 56
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPII 185
++ R ++ K + D G Y C V N+ +V+LIV PP
Sbjct: 57 ASYEDRVTFLPT------GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK 110
Query: 186 SDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNS-----------AALSTGGSIYR 233
+ G L C +G P +W +D + S+
Sbjct: 111 P-TVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169
Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
L ++ +D G Y C A+NG G + AV +E
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 206
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 138 bits (350), Expect = 2e-39
Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 19/203 (9%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGS---------- 230
+ + + S V V E +++ L C +GF +P + W+ + +
Sbjct: 1 KGSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYAD 58
Query: 231 --IYRGNILKIPNITKTDRGTYYCVAQNGVGRG-MKRNIAVEVEFAPVITINRPRQGQAL 287
+ + + ++T+ D G Y C+ G+ + +I + V P +
Sbjct: 59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTI 118
Query: 288 QYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT---SLRVITIER 343
A+L C + PP W KDG+ ++ F S D L +
Sbjct: 119 GNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 344 RQFGQYACKAANKYGSAQKEIEL 366
G+Y C+A N YG+A +
Sbjct: 179 FDSGEYYCQAQNGYGTAMRSEAA 201
Score = 100 bits (250), Expect = 4e-25
Identities = 42/225 (18%), Positives = 70/225 (31%), Gaps = 38/225 (16%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
++ + ++ L C+ + V W + + S I
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCT---YSGFSSPRVEWKFVQ----GSTTALVCYNSQITA 54
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVELIVRRPPI 184
++T ++ + D G Y C V + + + L V PP
Sbjct: 55 PYADRVTFSSSG----ITFSSVTRKDNGEYTCMV----SEEGGQNYGEVSIHLTVLVPPS 106
Query: 185 ISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI------- 236
S V+ G L C +G P SW +D + L+ R +
Sbjct: 107 KPTIS-VPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165
Query: 237 -----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
L +T D G YYC AQNG G R+ A ++ +
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMDAVELN 209
Score = 47.7 bits (113), Expect = 2e-06
Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 18/118 (15%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P+ IS I A L CS W K + +
Sbjct: 105 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDG-----ISMLTA-DAKKTRAFM 158
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVELIVRRPPI 184
T DP++ L + D+G Y C+ N S + +
Sbjct: 159 NSSFTIDPKSGD--LIFDPVTAFDSGEYYCQAQ----NGYGTAMRSEAAHMDAVELNV 210
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 140 bits (354), Expect = 4e-39
Identities = 45/304 (14%), Positives = 82/304 (26%), Gaps = 42/304 (13%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P+I E I + T L C V W
Sbjct: 13 PSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKT---------------------- 46
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
E ++ + T G Y C +N +++ + + VR P +
Sbjct: 47 -YFNEMVENKKNEWIQEKAEATRTGTYTCSN----SNGLTSSIYVFVRDPAKLF-LVGLP 100
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGT 249
+ E + C S + +L T + + I R
Sbjct: 101 LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLC 160
Query: 250 YYCVAQNGVGRGMKRNIAVEV----EFAPVITINRPRQGQALQYDAILECHVEAYPPPA- 304
C AQ ++V + PV+++ + C ++
Sbjct: 161 VRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVN 220
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS--LRVITIERRQFGQYACKAANKYGSAQK 362
+W+K Q + + + D + L + + G + C A N +GSA
Sbjct: 221 SMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV 280
Query: 363 EIEL 366
L
Sbjct: 281 TTTL 284
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 140 bits (353), Expect = 1e-38
Identities = 58/322 (18%), Positives = 98/322 (30%), Gaps = 65/322 (20%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+L C W+K G+ ++ R + L
Sbjct: 24 DAVELSCPPPGGGPMGPTVWVKD--------------GTGLVPSERVLV------GPQRL 63
Query: 147 SIKEIQETDAGIYKCEV--------------------IISLNNKVSAEVELIVRRPPIIS 186
+ D+G Y C + + AE + P +
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123
Query: 187 ---DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI------L 237
+ + V TV C A G P P+ISW ++ I + L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQWSL 182
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINRPRQGQALQ-YDAI 292
+ ++ +DRG Y CV +N G +++ ++V P++ P A+ D
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 293 LECHVEAYPPPAIVWIKDGVQ-----IMNNQHYSVSHFATSDEFSDTSLRVITIERRQF- 346
C V + P I W+K + Y +D L V+++ F
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 347 --GQYACKAANKYGSAQKEIEL 366
G+Y C A N G + L
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWL 323
Score = 121 bits (305), Expect = 9e-32
Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 29/211 (13%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKI 239
P ++ G V L C G P W +D + + + + L++
Sbjct: 6 EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQV 65
Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY---------- 289
N + D G Y C + ++ V + + + +
Sbjct: 66 LNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRP 125
Query: 290 --------------DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTS 335
C P P+I W+K+G + S
Sbjct: 126 ERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL----RHQQWS 181
Query: 336 LRVITIERRQFGQYACKAANKYGSAQKEIEL 366
L + ++ G Y C NK+GS ++ L
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTL 212
Score = 90.8 bits (225), Expect = 1e-20
Identities = 42/221 (19%), Positives = 70/221 (31%), Gaps = 53/221 (23%)
Query: 70 QRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM 122
P + + K +A T +C A P + W+K
Sbjct: 117 TGAPYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLK-------------- 159
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----SAEVEL 177
+G + R + L ++ + +D G Y C V NK + +++
Sbjct: 160 NGREFRGEHRIGGIKL-RHQQWSLVMESVVPSDRGNYTCVV----ENKFGSIRQTYTLDV 214
Query: 178 IVRRP--PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA------------ 223
+ R P PI+ + G V +C P I W +
Sbjct: 215 LERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPY 274
Query: 224 --ALSTGGSIYR---GNILKIPNITKTDRGTYYCVAQNGVG 259
L T G+ +L + N+T D G Y C+A N +G
Sbjct: 275 VTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG 315
Score = 52.7 bits (126), Expect = 7e-08
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 11/109 (10%)
Query: 270 VEFAPVITINRPRQGQALQ-YDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
P + Q L C P VW+KDG ++ ++ V
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG---- 59
Query: 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDE 376
L+V+ G Y+C+ +GD+
Sbjct: 60 -----PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDD 103
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 138 bits (349), Expect = 3e-38
Identities = 58/313 (18%), Positives = 104/313 (33%), Gaps = 51/313 (16%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P ++QI A C D P + W K ++
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGK---------------KVNSQ 50
Query: 132 RFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNN---KVSAEVELIVRRPPIIS- 186
RF+ E++ +L I+ ++ D +Y+C N +++ +L V R +
Sbjct: 51 RFETIEFDESAGAVLRIQPLRTPRDENVYECVA----QNSVGEITVHAKLTVLREDQLPS 106
Query: 187 -----DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNI 236
D + +V +T + C A+G P P I+W +D + S R
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDPSASNGRIKQLRSGA 165
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV---EFAPVITINRPRQGQALQYDAIL 293
L+I + +TD+G Y CVA N G + V AP +I + +
Sbjct: 166 LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNI 225
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
C P P + W++ + V + + + Y C A
Sbjct: 226 TCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-----------RNVLELTDVKDSANYTCVA 274
Query: 354 ANKYGSAQKEIEL 366
+ G + ++
Sbjct: 275 MSSLGVIEAVAQI 287
Score = 117 bits (294), Expect = 2e-30
Identities = 43/196 (21%), Positives = 64/196 (32%), Gaps = 20/196 (10%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----- 233
PP + I G C A G P P ++W + S
Sbjct: 3 GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 234 GNILKIPNI-TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--- 289
G +L+I + T D Y CVAQN VG + + + V + P Q
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 290 ----DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
A + C P P I W KD + + + + +L++ + E
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK-----QLRSGALQIESSEETD 175
Query: 346 FGQYACKAANKYGSAQ 361
G+Y C A N G
Sbjct: 176 QGKYECVATNSAGVRY 191
Score = 101 bits (253), Expect = 1e-24
Identities = 50/230 (21%), Positives = 79/230 (34%), Gaps = 25/230 (10%)
Query: 60 LSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPL 118
L+ L P I Q ++ + +TA + C+ + P I W K
Sbjct: 96 LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDFL------- 147
Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
P+ S S + R + L I+ +ETD G Y+C S + S+ L
Sbjct: 148 PVDPSAS----NGRIKQLRSGA-----LQIESSEETDQGKYECVATNSAGVRYSSPANLY 198
Query: 179 VR---RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN 235
VR P S S + G V + C A G P P + W + L+ + G
Sbjct: 199 VRVQNVAPRFSILPM-SHEIMPGGNVNITCVAVGSPMPYVKWMQGAE-DLTPEDDMPVGR 256
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ 285
+ D Y CVA + +G ++ + V+ P
Sbjct: 257 -NVLELTDVKDSANYTCVAMSSLGV-IEAVAQITVKSLPKAGTKHHHHHH 304
Score = 62.9 bits (153), Expect = 2e-11
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 270 VEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS 328
E P P+ + A C P P + W K G ++ + + ++
Sbjct: 3 GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI------ 55
Query: 329 DEFSDTSLRVITIERRQF----GQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
EF +++ V+ I+ + Y C A N G +L FP
Sbjct: 56 -EFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNI 111
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 134 bits (338), Expect = 1e-36
Identities = 55/317 (17%), Positives = 97/317 (30%), Gaps = 65/317 (20%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
LKC V I W K I D + L
Sbjct: 22 CNVLLKCKVANIKKETHIVWYK--------------DEREISVDEKHDFKDG----ICTL 63
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I E + DAGIY+ + ++ K + ++L+ + I + +
Sbjct: 64 LITEFSKKDAGIYEVILK---DDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKIQ 119
Query: 205 CYANGF----------PAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKTDRGT 249
A G ++W + SA + + G L+I T D+G
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 250 YYCVAQNGVGRGMKR-NIAVEV-----------EFAPVITINRPRQGQALQYD------- 290
Y +G K +++ + + A + NR R L
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGK 238
Query: 291 -AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
L C+V PPP + W+K+ + ++ H ++ + + + G+Y
Sbjct: 239 ALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL----KFEAGRTAYFTINGVSTADSGKY 294
Query: 350 ACKAANKYGSAQKEIEL 366
NKYGS + +
Sbjct: 295 GLVVKNKYGSETSDFTV 311
Score = 105 bits (264), Expect = 5e-26
Identities = 30/202 (14%), Positives = 56/202 (27%), Gaps = 23/202 (11%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIY---RG 234
P S V+ V L C I W +D +S
Sbjct: 4 PFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDE-REISVDEKHDFKDGI 60
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE 294
L I +K D G Y + ++ G+ K + + E + + ++ D ++
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 295 CHVEA----------YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
E + W +G I + L++
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-----TGEQIWLQINEPTPN 174
Query: 345 QFGQYACKAANKYGSAQKEIEL 366
G+Y + + QK ++L
Sbjct: 175 DKGKYVMELFDGKTGHQKTVDL 196
Score = 97.7 bits (243), Expect = 3e-23
Identities = 42/223 (18%), Positives = 66/223 (29%), Gaps = 47/223 (21%)
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMS 123
L + +I+ A+ L V Y + V W +
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH--------------N 145
Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR--- 180
GS I + R + E L I E D G Y + V+L +
Sbjct: 146 GSAIRYSDRVKTGVTGEQIW--LQINEPTPNDKGKYVM-ELFDGKTGHQKTVDLSGQAYD 202
Query: 181 ------------------RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNS 222
R ++ V + EG+ + L C G P P +SW ++
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK 261
Query: 223 AALSTGGSIY------RGNILKIPNITKTDRGTYYCVAQNGVG 259
AL++ R I ++ D G Y V +N G
Sbjct: 262 -ALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG 303
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 130 bits (328), Expect = 1e-36
Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 19/190 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKME-PLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
T +L C+ W + K + G ++D + + + L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
IK ++ D+ Y CEV ++ EV+L+V SD + +GQ++ L
Sbjct: 71 IIKNLKIEDSDTYICEV----EDQ-KEEVQLLVFGLTANSD-----THLLQGQSLTLTLE 120
Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI 266
+ +P++ R G +I G L + + D GT+ C + ++ I
Sbjct: 121 SPPGSSPSVQCRSPR------GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKI 173
Query: 267 AVEV-EFAPV 275
+ V F
Sbjct: 174 DIVVLAFQKA 183
Score = 103 bits (257), Expect = 2e-26
Identities = 27/196 (13%), Positives = 53/196 (27%), Gaps = 45/196 (22%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY------------------- 232
V+ +G TV L C A+ + W+ N + +
Sbjct: 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLW 63
Query: 233 --RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD 290
L I N+ D TY C ++ + + + + QGQ
Sbjct: 64 DQGNFPLIIKNLKIEDSDTYICEVEDQKEE--VQLLVFGLTANSDTHL---LQGQ----S 114
Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
L P++ + + +L V +E + G +
Sbjct: 115 LTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWT 159
Query: 351 CKAANKYGSAQKEIEL 366
C + +I++
Sbjct: 160 CTVLQNQKKVEFKIDI 175
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 133 bits (334), Expect = 1e-35
Identities = 52/304 (17%), Positives = 92/304 (30%), Gaps = 41/304 (13%)
Query: 92 LKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEI 151
S ++ +IW + PI+ ++R +L +
Sbjct: 38 FNYSTAHSAGLTLIWYWTRQ-DRDLEEPINFRLP----ENRISK------EKDVLWFRPT 86
Query: 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR---SVIVSEGQTVYLYC--- 205
D G Y C ++ + L V + ++ + + E + C
Sbjct: 87 LLNDTGNYTC-MLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNV 145
Query: 206 --YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ---NGVGR 260
Y PTI+W + I G L ++ G Y CV NG
Sbjct: 146 DGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTF 205
Query: 261 GMKRNIAVEVEFAPVIT----INRPRQGQ----ALQYDAILECHV----EAYPPPAIVWI 308
+ R + V+V +P I+ P + ++ C V + W
Sbjct: 206 HLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265
Query: 309 KDGVQIMNN-----QHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQK 362
DG + + + S+SH T DE L + + Y C A + G K
Sbjct: 266 IDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325
Query: 363 EIEL 366
++
Sbjct: 326 AAKV 329
Score = 84.2 bits (207), Expect = 3e-18
Identities = 26/208 (12%), Positives = 49/208 (23%), Gaps = 39/208 (18%)
Query: 186 SDNSTRSVIVSEGQTVYLYC-----------YANGFPAPTISWRRDNSAALSTGGSIYR- 233
++ R + V E + + C T+ W +R
Sbjct: 10 GLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRL 69
Query: 234 --------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ 285
++L D G Y C+ +N K +EV + +
Sbjct: 70 PENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 286 ALQYDA---------ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
Y ++ + + P I W +I N + +L
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI---------PEGMNL 179
Query: 337 RVITIERRQFGQYACKAANKYGSAQKEI 364
+ G Y C +
Sbjct: 180 SFLIALISNNGNYTCVVTYPENGRTFHL 207
Score = 76.8 bits (188), Expect = 9e-16
Identities = 28/199 (14%), Positives = 50/199 (25%), Gaps = 49/199 (24%)
Query: 91 DLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
++ + + W + I +L
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLI-------------------- 183
Query: 151 IQETDAGIYKCEVIISLNNK---VSAEVELIV------RRPPIISD-NSTRSVIVSEGQT 200
++ G Y C V N + ++ + + V PP+I N G+
Sbjct: 184 ALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243
Query: 201 VYLYCYA----NGFPAPTISWRRDNS--------------AALSTGGSIYRGNILKIPNI 242
+ + C + W D + S R IL I +
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303
Query: 243 TKTDRGT-YYCVAQNGVGR 260
T D Y C A++ G
Sbjct: 304 TSEDLKRSYVCHARSAKGE 322
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 134 bits (338), Expect = 1e-35
Identities = 35/250 (14%), Positives = 73/250 (29%), Gaps = 29/250 (11%)
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
DS+ + + + K + E +C L + + I + +
Sbjct: 177 DSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELG-RECTRLFTIDLNQTPQT--T 233
Query: 190 TRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSA----------ALSTGGSIYRGNILK 238
+ + G+ +++ C A + ++W +N A ST ++ R
Sbjct: 234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAF 293
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECH 296
+ ++ + D G Y C + + + V + I + + +
Sbjct: 294 VSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVR 349
Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
+AYP W Q + S+ + Q G+Y A N
Sbjct: 350 FKAYPQIRCTWTFSRKSFPCEQKGLD---------NGYSISKFCNHKHQPGEYIFHAEND 400
Query: 357 YGSAQKEIEL 366
K L
Sbjct: 401 DAQFTKMFTL 410
Score = 130 bits (329), Expect = 2e-34
Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 20/224 (8%)
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
+ + Y + L + + + +V V ++ L
Sbjct: 19 NNDSSVGKSSSYPMVS----ESPEDLGCALRPQSSGTVYE--AAAVEVDVSASITLQVLV 72
Query: 208 NGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
+ + W +S+ + + I +T+T G Y Q+
Sbjct: 73 DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132
Query: 265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSH 324
V + + T+ RP + ++ L C E+ P P + W+ Q
Sbjct: 133 -FTVSIRNTLLYTLRRPYF-RKMENQDALVCISESVPEPIVEWVLCDSQG---------E 181
Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFD 368
+ + + C A N+ G + D
Sbjct: 182 SCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTID 225
Score = 128 bits (323), Expect = 1e-33
Identities = 42/300 (14%), Positives = 92/300 (30%), Gaps = 32/300 (10%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLI 127
++ Y + D++ + L+ V A +W+ S +
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLVD-APGNISCLWVFK--------------HSSL 89
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPI 184
F L S + I ++ ET AG Y + ++ + + +R +
Sbjct: 90 NCQPHFDLQNRGVVS---MVILKMTETQAGEYLLFI----QSEATNYTILFTVSIRNTLL 142
Query: 185 ISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK 244
+ E Q L C + P P + W +S S + + +
Sbjct: 143 YT-LRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECH-VEAYPPP 303
C A+N +GR R +++ P+ + + C V
Sbjct: 201 LFGTDIRCCARNELGRECTRLFTIDL--NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGF 258
Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVIT-IERRQFGQYACKAANKYGSAQK 362
+ W + + ++ +S ++T+ ++ + R G Y C ++ +
Sbjct: 259 GLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318
Score = 110 bits (275), Expect = 5e-27
Identities = 24/216 (11%), Positives = 58/216 (26%), Gaps = 25/216 (11%)
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMS 123
L + T + + + ++C + + + W
Sbjct: 220 RLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--------------E 265
Query: 124 GSLIIHDSRFQLTTDPETSTYI----LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
+ + F+++T T I + + D G Y C + S + +
Sbjct: 266 NKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS----SKHPSQSALVTI 321
Query: 180 RRPP-IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238
I + NS+ + + + +P +W + + G +
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS 381
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
K G Y A+N + + + +
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRSGT 416
Score = 75.9 bits (186), Expect = 3e-15
Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILE 294
K + + +Y V+++ G A+ + + + L+
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSA----SITLQ 69
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
V+A + +W+ + H+ + S+ ++ + Q G+Y
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQ 123
Query: 355 NKYGSAQKEIELFDRETQTGDETFPIFYA 383
++ + + R T P F
Sbjct: 124 SEATNYTILFTVSIRNTLLYTLRRPYFRK 152
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 132 bits (332), Expect = 1e-35
Identities = 53/325 (16%), Positives = 94/325 (28%), Gaps = 48/325 (14%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLI 127
+R I +S + C + + + W K D+ P+S +
Sbjct: 7 KEREEKIILVSSAN-----EIDVRPCPLNPNEHKGTITWYKDDS-----KTPVSTEQASR 56
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPII- 185
IH L + D+G Y C V S ++ + + P +
Sbjct: 57 IH-----------QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCY 105
Query: 186 SDNSTRSVIVSEGQTVYLYC------YANGFPAPTISWRRDNSAALSTGGSI-YRGNILK 238
+ + + L C P + W +D L + L
Sbjct: 106 NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI 165
Query: 239 IPNITKTDRGTYYCVAQN---GVGRGMKRNIAVEV-----EFAPVITINRPRQGQALQ-Y 289
+ N+ + RG Y C A G + R I PVI +
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGS 225
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT----SDEFSDTSLRVITIERRQ 345
L C+V W +G I + + + +++ T + V+ I +
Sbjct: 226 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 285
Query: 346 F----GQYACKAANKYGSAQKEIEL 366
+ C A N +G I+L
Sbjct: 286 SRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 84.0 bits (207), Expect = 2e-18
Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 53/231 (22%)
Query: 64 ISLASSQRTPTISYISQ---EQIKDIAQTADLKCSVQY---ADDYP---VIWMKMDTAKK 114
IS + P + Y +Q +Q +A L C ++ + W
Sbjct: 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW-------Y 144
Query: 115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---V 171
+ P+ + L + + E G Y C + K +
Sbjct: 145 KDCKPLLLDNIHFSGVKD------------RLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Query: 172 SAEVELIV-----RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--- 223
+ +E I P+I + ++ V G + L C G + W+ + S
Sbjct: 193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDE 252
Query: 224 -------------ALSTGGSIYRGNILKIPNITKTD-RGTYYCVAQNGVGR 260
+ +L I I + + C A+N G
Sbjct: 253 DDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 127 bits (322), Expect = 1e-35
Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 23/179 (12%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNIT 243
+ VS+GQ V L C G P I W +D A + +Y L + ++
Sbjct: 10 VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDG-AVVQNLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPP 303
++D G Y+C ++G + + + + VE P T+ L C P P
Sbjct: 69 RSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP 128
Query: 304 A-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
IVW + +I S + L V + Q ++C+A N G A
Sbjct: 129 VTIVWWRGTTKI------------GGPAPSPSVLNVTGVT--QSTMFSCEAHNLKGLAS 173
Score = 106 bits (266), Expect = 1e-27
Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 21/201 (10%)
Query: 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS 131
+ + Q L CSV+ ++ + W+K G+++ +
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK--------------DGAVVQNLD 47
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTR 191
+ + + LS+K ++ +DAG Y C+V ++S V L V P + +
Sbjct: 48 QLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP-K 106
Query: 192 SVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
+ V L C A G P P TI W R + GG ++L + + T +
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTT---KIGGPAPSPSVLNVTGV--TQSTMF 161
Query: 251 YCVAQNGVGRGMKRNIAVEVE 271
C A N G R V ++
Sbjct: 162 SCEAHNLKGLASSRTATVHLQ 182
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 132 bits (334), Expect = 2e-35
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----------- 229
+P II ++ E V L C A G P P I+W+R T G
Sbjct: 1 QPHIIQ---LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK 57
Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY 289
+ + L I ++ +D G Y C A + +G G ++++ +++E+AP N+
Sbjct: 58 GQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGN 116
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+ C V++ PP +I W +D + + ++ ++T + L + FG+Y
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDNDFGRY 173
Query: 350 ACKAANKYGSAQKEIEL 366
C A N G+ +E L
Sbjct: 174 NCTATNHIGTRFQEYIL 190
Score = 103 bits (259), Expect = 6e-25
Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 28/198 (14%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
L C A+ P + W + + + D R ++ +S+
Sbjct: 16 GQVTLVCD---AEGEPIPEITWKRAVD-------GFTFTEGDKSLDGRIEVKGQHGSSS- 64
Query: 145 ILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVY 202
L IK+++ +D+G Y CE + + L + P N T EG +
Sbjct: 65 -LHIKDVKLSDSGRYDCEAA---SRIGGHQKSMYLDIEYAPKFISNQT-IYYSWEGNPIN 119
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITKTDRGTYYCVAQN 256
+ C P +I WRRD + + + IL+I + D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 257 GVGRGMKRNIAVEVEFAP 274
+G + + + P
Sbjct: 180 HIGT-RFQEYILALADVP 196
Score = 57.5 bits (139), Expect = 2e-09
Identities = 29/197 (14%), Positives = 51/197 (25%), Gaps = 27/197 (13%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P ++ C V+ + W + LP + +
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDK-----LVLPAK-------NTTN 148
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP------IIS 186
+ + L I + D G Y C + E L + P I
Sbjct: 149 LKTYSTGRKMI--LEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGVKII 205
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFP--APTISWRRDNSAALSTGGSIYRGNILKIPNITK 244
+ S + VS + G P + + S S ++ + N+
Sbjct: 206 ELSQTTAKVSFNKP----DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEP 261
Query: 245 TDRGTYYCVAQNGVGRG 261
A NG G+G
Sbjct: 262 NTTYEIRVAAVNGKGQG 278
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 127 bits (320), Expect = 3e-35
Identities = 50/198 (25%), Positives = 78/198 (39%), Gaps = 15/198 (7%)
Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR--- 233
+ + P +SV+V EG T + +GFP P +SW RD ++ +
Sbjct: 1 MTTQAPTFTQ--PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF 58
Query: 234 ---GNILKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEVEFAPVITINRPRQGQALQ- 288
L IP +TK + G Y A NG G+ + V+ E AP + R + Q
Sbjct: 59 SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG 118
Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
L+ V P P + + +DG +I ++ + +S SL + G
Sbjct: 119 SQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL-----YSLLIAEAYPEDSGT 173
Query: 349 YACKAANKYGSAQKEIEL 366
Y+ A N G A EL
Sbjct: 174 YSVNATNSVGRATSTAEL 191
Score = 97.9 bits (244), Expect = 2e-24
Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 33/204 (16%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLI 127
+ + PT + Q + TA + + P + W + G +I
Sbjct: 2 TTQAPTFTQPLQSVVVLEGSTATFEAHIS-GFPVPEVSWFR--------------DGQVI 46
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRR--- 181
+ + L+I + + ++G Y + N ++ EL+V+
Sbjct: 47 STSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA----TNGSGQATSTAELLVKAETA 102
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI-- 236
PP +S+ V +G V L G P P + + RD + + + G++
Sbjct: 103 PPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGA-EIQSSLDFQISQEGDLYS 160
Query: 237 LKIPNITKTDRGTYYCVAQNGVGR 260
L I D GTY A N VGR
Sbjct: 161 LLIAEAYPEDSGTYSVNATNSVGR 184
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 126 bits (319), Expect = 3e-35
Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 19/196 (9%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYR------ 233
R + +S G++ + C G ISW N LS
Sbjct: 1 RVLQVD-IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 234 -GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI 292
+ L I N D G Y CV G + + V++ + Q DA+
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 293 LECHVEAYPPPAIVWIKDGVQIM--NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
+ C V + PP I+W G ++ + + V S+ L++ I++ G Y
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--------LSNNYLQIRGIKKTDEGTYR 171
Query: 351 CKAANKYGSAQKEIEL 366
C+ ++
Sbjct: 172 CEGRILARGEINFKDI 187
Score = 119 bits (301), Expect = 1e-32
Identities = 40/205 (19%), Positives = 69/205 (33%), Gaps = 19/205 (9%)
Query: 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIH 129
R + + + + ++ C V I W + G +
Sbjct: 1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPN-------------GEKLSP 47
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
+ + + + L+I DAGIYKC V + A V + + + + +
Sbjct: 48 NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTD 246
T EG+ + C PTI W+ + + N L+I I KTD
Sbjct: 108 T-PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTD 166
Query: 247 RGTYYCVAQNGVGRGMK-RNIAVEV 270
GTY C + + ++I V V
Sbjct: 167 EGTYRCEGRILARGEINFKDIQVIV 191
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 129 bits (326), Expect = 9e-35
Identities = 51/297 (17%), Positives = 84/297 (28%), Gaps = 33/297 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ KC +D + D + + + + L
Sbjct: 45 EPFSAKCPP--IEDSLLSHRYNDKDNVVNWE----------KIGKTRRPLNRRVKNGDLW 92
Query: 148 IKEIQETDAG-IYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC- 205
I D+ Y C V + V V +R+PP T + + + LYC
Sbjct: 93 IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI-PETYELGTHDKYGIDLYCG 151
Query: 206 YANGFPAPTISWRRDNSAALSTGGSIY--RGNILKIPNITKTDRGTYYCVAQNGVGRGMK 263
I+W ++N L G+ Y G L I N D G Y C +K
Sbjct: 152 ILYAKHYNNITWYKNNQ-ELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDV-RIK 209
Query: 264 RNIAVEV---------EFAPVITINRPRQGQALQYDAILECHVEAYP----PPAIVWIKD 310
+I V + I P+ + A + C + I W
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269
Query: 311 GVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ-YACKAANKYGSAQKEIEL 366
I+ S +S ++ +L + G Y C+ N Y +
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 102 bits (256), Expect = 5e-25
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 20/196 (10%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG---------FPAPTISWRRDNSAALSTGGSIY 232
P T + + + G+ C ++W + +
Sbjct: 28 NPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVK 87
Query: 233 RGNILKIPNITKTDRGTYY-CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDA 291
G+ L I N T D Y C G ++ + + P G +Y
Sbjct: 88 NGD-LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 292 ILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
L C + A I W K+ +++ + +L + E G+Y
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS--------GQNLIIHNPELEDSGRYD 198
Query: 351 CKAANKYGSAQKEIEL 366
C + +I +
Sbjct: 199 CYVHYDDVRIKNDIVV 214
Score = 87.6 bits (216), Expect = 2e-19
Identities = 37/224 (16%), Positives = 62/224 (27%), Gaps = 42/224 (18%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
++ P+ + E DL C + YA Y I W K + + + G+
Sbjct: 126 RKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ-------ELIIDGTKYS 178
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-------VSAEVELIVRR 181
+ L I + D+G Y C V + +I +
Sbjct: 179 QSGQ------------NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ 226
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP----TISWRRDNSAALSTGGSIY----- 232
+ V+ G+ + C A I W + + +Y
Sbjct: 227 DHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTS 286
Query: 233 ----RGNILKIPNITKTDRG-TYYCVAQNGVGRGMKRNIAVEVE 271
L N+T+ G TY C N V +E
Sbjct: 287 SGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 125 bits (316), Expect = 1e-34
Identities = 34/184 (18%), Positives = 71/184 (38%), Gaps = 14/184 (7%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----ILKIPNITK 244
S V +S G++ + C A G P + +ST + + L I N
Sbjct: 8 SLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANI 67
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA 304
D G Y C A + G+ + + +E+ Q DA + C V + P PA
Sbjct: 68 EDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPA 127
Query: 305 IVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
+ W+ ++ +++ +++ ++ +L+++ I + G Y C+ +
Sbjct: 128 VSWLYHNEEVTTISDNRFAM--------LANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 363 EIEL 366
++
Sbjct: 180 FRDI 183
Score = 116 bits (293), Expect = 2e-31
Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 20/190 (10%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
++ + + ++ C+ + + W G II R
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQ-------------GEKIISTQR 48
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
+ + S L+I DAGIY+C+ + A V L + +
Sbjct: 49 VVVQKEGVRSR--LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR-EVVSP 105
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRGT 249
+G+ + C + PAP +SW N + ++ N L+I NI K+D G
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGI 165
Query: 250 YYCVAQNGVG 259
Y C +
Sbjct: 166 YRCEGRVEAR 175
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 124 bits (313), Expect = 5e-34
Identities = 36/205 (17%), Positives = 56/205 (27%), Gaps = 35/205 (17%)
Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI 231
+V R I+ + S V GQ V L C A G P W + N + G
Sbjct: 8 HHHSSGLVPRGSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK-EIPNG--- 62
Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY-- 289
+ L + D G Y C N + ++V P +
Sbjct: 63 -NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQI 121
Query: 290 -------------DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
+L+C P P W K+ + + + +
Sbjct: 122 CVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------------TKKLY 167
Query: 337 RVITIERRQFGQYACKAANKYGSAQ 361
V ++ G Y C N S
Sbjct: 168 MVPYVDLEHQGTYWCHVYNDRDSQD 192
Score = 110 bits (276), Expect = 1e-28
Identities = 40/225 (17%), Positives = 68/225 (30%), Gaps = 50/225 (22%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSL 126
R I+ + + Q L C A +P W KM+ + +P + L
Sbjct: 16 PRGSKITVNPESKAVLAGQFVKLCCR---ATGHPFVQYQWFKMN-----KEIPNGNTSEL 67
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
I + + DAG Y C V + + S +L V P
Sbjct: 68 IFNA--------------------VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107
Query: 187 DNST--------------RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
S S + G T+ L C A G P P W ++ +
Sbjct: 108 QRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL- 166
Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
+P + +GTY+C N + + + ++ +
Sbjct: 167 ----YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
Score = 44.1 bits (104), Expect = 2e-05
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 31/128 (24%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
I Q T L+C A P W K + PL ++
Sbjct: 119 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNE-----LPLTHETKKLYMVP 170
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
+ G Y C V +++ S +VE+I+ +
Sbjct: 171 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
Query: 190 TRSVIVSE 197
+ +
Sbjct: 211 NKEQTTDQ 218
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 126 bits (317), Expect = 1e-33
Identities = 44/330 (13%), Positives = 91/330 (27%), Gaps = 61/330 (18%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
P + D + + +C W K
Sbjct: 4 PFTKEVVVNVDDDGVISLNFECDK--MTPKSEFSWSK--------------DYVSTEDSP 47
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEV-----------IISLNNKVSAEVELIVR 180
R ++ + + ++ K++ D GIY C+V I K + +
Sbjct: 48 RLEVESKGNKTK--MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHK 105
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----- 235
P + + I+ +GQ + +++ + +
Sbjct: 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 165
Query: 236 -ILKIPNITKTDRGTYYCVAQNGVGRGM-----------KRNIAVEVEFAPVITINRPRQ 283
+ + + D GTY Q+G K E + I P
Sbjct: 166 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 284 GQALQY------DAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
+ L + + +L+C V IVW KD +I ++ + +L
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTL 278
Query: 337 RVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ ++ G Y + G + ++L
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
Score = 93.1 bits (231), Expect = 1e-21
Identities = 25/208 (12%), Positives = 60/208 (28%), Gaps = 27/208 (12%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRG 234
P + +V ++ C P SW +D + + + G+ +
Sbjct: 3 DPFTKEVV-VNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTK- 59
Query: 235 NILKIPNITKTDRGTYYCVAQNGVG---------RGMKRNIAVEVEF-APVITINRPRQG 284
+ ++ D G Y C + G +KR +A+ E P + +
Sbjct: 60 --MTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 285 QALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
+ L+ + + +I + +I Y + + + ++
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQ 174
Query: 343 RRQFGQYACKAANKYGSAQKEIELFDRE 370
G Y + + + + L
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVVLVGDV 202
Score = 87.7 bits (217), Expect = 1e-19
Identities = 34/229 (14%), Positives = 73/229 (31%), Gaps = 43/229 (18%)
Query: 57 IVALSFLISLASSQRTPTISYISQEQIKDIAQ-TADLKCSVQYADDYP-VIWMKMDTAKK 114
L L++L+ + PT+ S+ ++ + + + V ++
Sbjct: 91 EEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF------ 144
Query: 115 MEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAE 174
+ I ++++ D T + ++++Q+ D G Y ++ + K +
Sbjct: 145 --------NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ---DGKATNH 193
Query: 175 --VELIVRRPPIISDNST-----------------RSVIVSEGQTVYLYCYANGFPAPT- 214
V L+ + + S V+ V L C T
Sbjct: 194 STVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETH 253
Query: 215 ISWRRDNSAALSTGGSIY---RGNILKIPNITKTDRGTYYCVAQNGVGR 260
I W +D +S L I +K D G Y + ++ G+
Sbjct: 254 IVWYKDER-EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 301
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 122 bits (308), Expect = 2e-33
Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 22/190 (11%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNIT 243
R++ V L C G P P + W R + G YR + L I ++T
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQG-KEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-------YDAILECH 296
D Y A N G + ++EVE I+ P+ + + ++
Sbjct: 71 DDDATVYQVRATNQGGS-VSGTASLEVEVPA--KIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
P P I W K I NN HY V + + +ER+ G Y A N+
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 357 YGSAQKEIEL 366
+G QK +EL
Sbjct: 184 FGIDQKTVEL 193
Score = 94.0 bits (234), Expect = 6e-23
Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 34/202 (16%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P + A L C V P++ W + G II D
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYR--------------QGKEIIADG 49
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIIS-- 186
+ + + L I + + DA +Y+ N+ VS L V P I
Sbjct: 50 LKYRIQEFKGGYHQLIIASVTDDDATVYQVRA----TNQGGSVSGTASLEVEVPAKIHLP 105
Query: 187 --DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGN----ILK 238
+V G+ V + +G P P I+W++ + G + ++
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQD-LIDNNGHYQVIVTRSFTSLVF 164
Query: 239 IPNITKTDRGTYYCVAQNGVGR 260
+ + D G Y A+N G
Sbjct: 165 PNGVERKDAGFYVVCAKNRFGI 186
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 122 bits (308), Expect = 3e-33
Identities = 47/198 (23%), Positives = 70/198 (35%), Gaps = 25/198 (12%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GN 235
PP I ++ V G YC A G P P+I WR++ T
Sbjct: 3 GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 236 ILKIPNITKT----DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ--- 288
+ I I D Y CVA+NGVG + + + + P Q
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 289 ----YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIER 343
+ ++ C P P I WIK+ ++ M+N YS+ D L++
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL---------KDGFLQIENSRE 172
Query: 344 RQFGQYACKAANKYGSAQ 361
G+Y C A N G+
Sbjct: 173 EDQGKYECVAENSMGTEH 190
Score = 107 bits (268), Expect = 1e-27
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 26/220 (11%)
Query: 68 SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSL 126
+ P I Q Q + A C+ + D P I W K +S +
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGK-------KVSGT--- 50
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNKVSAEVELIV------ 179
SR+ + IL I+ ++ D Y+C + + VSA+ L +
Sbjct: 51 ---QSRYTVLEQ-PGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKT 106
Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-ALSTGGSIYRGNIL 237
P+I+ + ++ G TV + C A G P P I W ++ + +S + L
Sbjct: 107 PAGFPVITQGP-GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL 165
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
+I N + D+G Y CVA+N +G + + V+ V T
Sbjct: 166 QIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT 205
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 121 bits (305), Expect = 5e-33
Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 16/185 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-----YRGNILKIPNITKT 245
+ V G+ L C G P P I W R L R + L + +
Sbjct: 15 KDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG-KELIQSRKYKMSSDGRTHTLTVMTEEQE 73
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY---DAILECHVEAYPP 302
D G Y C+A N VG ++ + + ++ P P + + L P
Sbjct: 74 DEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV 132
Query: 303 PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQ 361
PA+ W + N+++ ++ + T L + ++R+ G+Y + +N +G+
Sbjct: 133 PAMTWFHGQKLLQNSENITIENTEHY-----THLVMKNVQRKTHAGKYKVQLSNVFGTVD 187
Query: 362 KEIEL 366
+++
Sbjct: 188 AILDV 192
Score = 102 bits (256), Expect = 5e-26
Identities = 38/200 (19%), Positives = 70/200 (35%), Gaps = 36/200 (18%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
P I ++ + + A L C + P + W + G +I
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIV---GRPLPDIKWYR--------------FGKELIQ 50
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISD 187
++++++D T T L++ ++ D G+Y C N +V +L+++ P
Sbjct: 51 SRKYKMSSDGRTHT--LTVMTEEQEDEGVYTCIAT---NEVGEVETSSKLLLQATPQFHP 105
Query: 188 NST--RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNILKIP 240
+ G T+ L+ G P P ++W L +I L +
Sbjct: 106 GYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQK-LLQNSENITIENTEHYTHLVMK 164
Query: 241 NIT-KTDRGTYYCVAQNGVG 259
N+ KT G Y N G
Sbjct: 165 NVQRKTHAGKYKVQLSNVFG 184
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 122 bits (307), Expect = 2e-32
Identities = 38/286 (13%), Positives = 70/286 (24%), Gaps = 34/286 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
T L CS PV+W +M E T + +L+
Sbjct: 16 STFVLTCSG----SAPVVWERMSQEPPQE-----------------MAKAQDGTFSSVLT 54
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV-----RRPPIISDNSTRSVIVSEGQTVY 202
+ + D G Y C S + L + + +D + ++E +
Sbjct: 55 LTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEIT 114
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGM 262
+ C P ++ ++ I + +Y C G
Sbjct: 115 IPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGI-----FEDRSYICKTTIGDREVD 168
Query: 263 KRNIAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
V I ++ ++ + L C V W +
Sbjct: 169 SDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP 228
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ L + + E G Y C Q E +
Sbjct: 229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
Score = 82.4 bits (203), Expect = 6e-18
Identities = 21/184 (11%), Positives = 45/184 (24%), Gaps = 28/184 (15%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNITKT 245
++++ T L C + + W R + G +L + N+T
Sbjct: 6 PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 246 DRGTYYCVAQNGVGRGMKRNIAVEVEFAP-----VITINRPRQGQALQY-DAILECHVEA 299
D G Y+C + G + + + + + + C V
Sbjct: 62 DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTD 121
Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
P + + + Y + + Y CK
Sbjct: 122 -PQLVVTLHEKKGDVALPVPYDHQRGFSG--IFED------------RSYICKTTIGDRE 166
Query: 360 AQKE 363
+
Sbjct: 167 VDSD 170
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 122 bits (308), Expect = 2e-32
Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 17/197 (8%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI------YRGN 235
P + R++ V L C G P P + W R ++ G +
Sbjct: 4 APHFKEEL-RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY-----D 290
L I ++T D Y A N G ++EVE I + + +G +
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
++ P P I W K I NN HY V + + +ER+ G Y
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRSFTSLVFPNGVERKDAGFYV 177
Query: 351 CKAANKYGSAQKEIELF 367
A N++G QK +EL
Sbjct: 178 VCAKNRFGIDQKTVELD 194
Score = 89.4 bits (222), Expect = 2e-20
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 24/182 (13%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
A L C V V W + G II D + + + L
Sbjct: 20 SNATLVCKVTGHPKPIVKWYR--------------QGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII----SDNSTRSVIVSEGQTVYL 203
I + + DA +Y+ + VS L V P I + +V G+ V +
Sbjct: 66 IASVTDDDATVYQVRAT-NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 204 YCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTDRGTYYCVAQNGV 258
+G P P I+W++ + G ++ + + D G Y A+N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 259 GR 260
G
Sbjct: 185 GI 186
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 122 bits (307), Expect = 6e-32
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 10/190 (5%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSIYRGNILK 238
+ V G V L C G W SA + G + +
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVE 298
+ +R C A+N VGR + ++ V V F + ++ + + + V+
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQLHTAVE----MHHWCIPFSVD 271
Query: 299 AYPPPAIVWIKDGVQIMNNQHY--SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
P P++ W+ +G + A ++ LR+ G Y AAN
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 357 YGSAQKEIEL 366
+G A I
Sbjct: 332 FGQASASIMA 341
Score = 85.2 bits (210), Expect = 1e-18
Identities = 31/216 (14%), Positives = 54/216 (25%), Gaps = 41/216 (18%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
PT+ D+ L+C V+ W+ + +
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE-------------LEQSATVMK 205
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNS 189
+ + C N V V++ V P +
Sbjct: 206 SGGLPSLGL----TLANVTSDLNRKNVTCWA----ENDVGRAEVSVQVNVSFPASVQL-- 255
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG-----------GSIYRGNILK 238
E + +G PAP++ W + S T R L+
Sbjct: 256 ---HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 312
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
+ T + G Y +A N G+ +I P
Sbjct: 313 LNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 347
Score = 39.3 bits (91), Expect = 0.001
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 18/121 (14%)
Query: 67 ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS 125
S Q + Q + SV P + W+ + ++ +
Sbjct: 241 VSVQVNVSFPASVQLHTAVEMHHWCIPFSVD-GQPAPSLRWLFNGS-------VLNETSF 292
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRP 182
+ L + + + G Y N + SA +
Sbjct: 293 IFTEFLEPAANETVRHGC--LRLNQPTHVNNGNYTLLA----ANPFGQASASIMAAFMDN 346
Query: 183 P 183
P
Sbjct: 347 P 347
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 118 bits (298), Expect = 8e-32
Identities = 47/199 (23%), Positives = 81/199 (40%), Gaps = 12/199 (6%)
Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
A + + P II ++V + + L C G P PTI W +D + +
Sbjct: 1 APLAGQYQSPRIIE--HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH 58
Query: 233 RGNI--------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQ 283
R + + D G Y+CVA+N VG+ + R+ ++++ +
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDT 118
Query: 284 GQALQYDAILECH-VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
A A+LEC + P P ++WIKDGV + + + S + +L + +E
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178
Query: 343 RRQFGQYACKAANKYGSAQ 361
G Y C A N G+ +
Sbjct: 179 PIDEGNYKCIAQNLVGTRE 197
Score = 88.0 bits (218), Expect = 2e-20
Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 34/228 (14%)
Query: 66 LASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISM 122
LA ++P I + + + A L C + P + W K P+S
Sbjct: 3 LAGQYQSPRIIEHPTDLVVKKNEPATLNCK---VEGKPEPTIEWFKDGE-------PVST 52
Query: 123 SGSLIIHDSRFQLTTDPETSTYILS-IKEIQETDAGIYKCEVIISLNNKVSAEVELIV-- 179
+ + + + + + ++ +E D G Y C + VS L +
Sbjct: 53 N------EKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAV 106
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGS-------- 230
R + V++G+T L C G P PT+ W +D
Sbjct: 107 LRDDFRV--EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 231 -IYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
I G L I N+ D G Y C+AQN VG + V+
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
Score = 47.6 bits (113), Expect = 2e-06
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+TA L+C P + W+K PL + SR ++ L
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDG-----VPLD-DLKAMSFGASSRVRIVDG-----GNL 172
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
I ++ D G YKC + + S+ +LIV+ +
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 117 bits (295), Expect = 3e-31
Identities = 45/218 (20%), Positives = 74/218 (33%), Gaps = 24/218 (11%)
Query: 169 NKVSAEVELIVRRPPIIS---DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAAL 225
+ VS +R P + R V TV C A G P PT+ W ++
Sbjct: 4 DFVSENSN--NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE-F 60
Query: 226 STGGSIYR------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV----EFAPV 275
I L + ++ +D+G Y CV +N G + ++V P+
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPI 119
Query: 276 ITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIM------NNQHYSVSHFATS 328
+ P + D C V + P I WIK + + V +
Sbjct: 120 LQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGI 179
Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + L + + G+Y CK +N G A + L
Sbjct: 180 NSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 90.7 bits (225), Expect = 3e-21
Identities = 40/222 (18%), Positives = 70/222 (31%), Gaps = 51/222 (22%)
Query: 68 SSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPI 120
+++R P + + + + A T +C A P + W+K
Sbjct: 11 NNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP---AGGNPMPTMRWLK------------ 55
Query: 121 SMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVEL 177
+G + R + L ++ + +D G Y C V N+ ++ L
Sbjct: 56 --NGKEFKQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVV----ENEYGSINHTYHL 108
Query: 178 IV----RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG---- 229
V R PI+ + G V C P I W + S G
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 230 -----------SIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
+ +L + N+T+ D G Y C N +G+
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210
Score = 64.1 bits (156), Expect = 5e-12
Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 253 VAQNGVGRGMKRNIAVEVEFAPVIT--INRPRQGQALQY--DAILECHVEAYPPPAIVWI 308
+A++ V + AP T ++ A+ C P P + W+
Sbjct: 1 MAEDFVSE------NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWL 54
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
K+G + SL + ++ G Y C N+YGS L
Sbjct: 55 KNGKEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 118 bits (296), Expect = 5e-31
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 19/226 (8%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
+TST I D+G Y+C+ + S ++L + R ++ S+R + +EG+
Sbjct: 44 QTSTPSYRITSASVNDSGEYRCQRG---LSGRSDPIQLEIHRGWLLLQVSSR--VFTEGE 98
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
+ L C+A + + R+ A + + L I + GTY+C
Sbjct: 99 PLALRCHAWKDKLVYNVLYYRNGKAF----KFFHWNSNLTILKTNISHNGTYHCSGMGKH 154
Query: 259 G-RGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNN 317
++ V+ F + L C + + +
Sbjct: 155 RYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSF---YM 211
Query: 318 QHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
++ TS E +++T R G Y C+AA + G+ K
Sbjct: 212 GSKTLRGRNTSSE-----YQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 91.1 bits (226), Expect = 3e-21
Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 28/187 (14%)
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
+I+ V V + +TV L+C P + W + +A ++ S +I +
Sbjct: 2 AVITLQPP-WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS------YRITS 54
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AILECHVEA- 299
+ D G Y C R+ +++E + + + + L CH
Sbjct: 55 ASVNDSGEYRCQRGLS-----GRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 300 YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGS 359
+++ ++G +++L ++ G Y C K+
Sbjct: 110 KLVYNVLYYRNGKAFKFFH-------------WNSNLTILKTNISHNGTYHCSGMGKHRY 156
Query: 360 AQKEIEL 366
I +
Sbjct: 157 TSAGISV 163
Score = 84.6 bits (209), Expect = 6e-19
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 7/137 (5%)
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR---RPPIISDNSTRSVI 194
L+I + + G Y C + SA + + V+ P+++ ++ +
Sbjct: 125 KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTVKELFPAPVLN--ASVTSP 181
Query: 195 VSEGQTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
+ EG V L C P + T + +I + D G Y+C
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCE 241
Query: 254 AQNGVGRGMKRNIAVEV 270
A G +KR+ +E+
Sbjct: 242 AATEDGNVLKRSPELEL 258
Score = 37.6 bits (87), Expect = 0.004
Identities = 19/111 (17%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD 130
P ++ + + L C + P + + + L + S
Sbjct: 170 PAPVLNASVTSPLLE-GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS----- 223
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIV 179
I + D+G+Y CE N K S E+EL V
Sbjct: 224 --------------EYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 115 bits (289), Expect = 2e-30
Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 18/185 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNILKIPNI-TK 244
G C A G P P I W + + + G++L+I + T
Sbjct: 14 VDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTP 73
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-------YDAILECHV 297
D Y CVA N VG + + + V I P Q A + C
Sbjct: 74 RDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA 132
Query: 298 EAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
P P I W KD + + +N + + + +L++ E G+Y C A N
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSES---IGALQIEQSEESDQGKYECVATNS 189
Query: 357 YGSAQ 361
G+
Sbjct: 190 AGTRY 194
Score = 94.5 bits (235), Expect = 7e-23
Identities = 46/220 (20%), Positives = 76/220 (34%), Gaps = 44/220 (20%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
P + +Q A C P ++W K +
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQA---TGDPRPKIVWNKKGKK---------------VS 48
Query: 130 DSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNK---VSAEVELIVRRPPII 185
+ RF++ + S +L I+ ++ D IY+C +N +S L V R I
Sbjct: 49 NQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA----SNNVGEISVSTRLTVLREDQI 104
Query: 186 S------DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI--- 236
D + +V +T + C A+G P P I+W +D + T + R
Sbjct: 105 PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLP-VDTSNNNGRIKQLRS 163
Query: 237 -----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
L+I ++D+G Y CVA N G + V
Sbjct: 164 ESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
Score = 67.5 bits (165), Expect = 2e-13
Identities = 28/118 (23%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 269 EVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
E P T P + A C P P IVW K G ++ N + +
Sbjct: 2 TGETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI----- 55
Query: 328 SDEFSDTSLRVITIERRQF----GQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
EF D S V+ I+ + Y C A+N G L FP
Sbjct: 56 --EFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTI 111
Score = 47.9 bits (114), Expect = 1e-06
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
+ PTI Q ++ + +TA + C+ + P I W K P+ S
Sbjct: 106 RGFPTIDMGPQLKVVERTRTATMLCAAS-GNPDPEITWFKDF-----LPVDTS------- 152
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
++ ++ S L I++ +E+D G Y+C S + SA L VR
Sbjct: 153 -NNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 117 bits (295), Expect = 3e-30
Identities = 44/320 (13%), Positives = 84/320 (26%), Gaps = 63/320 (19%)
Query: 88 QTADLKCSVQY----ADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE 140
+ L+C A P + W K D + +
Sbjct: 34 EPVALRCPQVPYWLWASVSPRINLTWHKND-----SARTVPGEEETRMW----------- 77
Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV-RRPPIISDNSTRSVIVS 196
L + + D+G Y C N +EL V + I++
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTT----RNASYCDKMSIELRVFENTDAFLPFISYPQILT 133
Query: 197 EGQTVYLYC-----YANGFPAPTISWRRDNSAALSTGG---SIYRGNILKIPNITKTDRG 248
+ L C + I W +D+ S+ L + ++ D G
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAG 193
Query: 249 TYYCVAQNGVGRG---MKRNIAVEV-----EFAPVITINRPRQGQALQY--DAILECHVE 298
Y CV + R+I + + E PVI P + + + C V
Sbjct: 194 YYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII--SPLKTISASLGSRLTIPCKVF 251
Query: 299 A---YPPPAIVWIKDGVQIMNNQHYSV--------SHFATSDEFSDTSLRVITIERRQFG 347
P ++W + + + + ++ + + L + R
Sbjct: 252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH 311
Query: 348 -QYACKAANKYGSAQKEIEL 366
+ C N +
Sbjct: 312 MDFKCVVHNTLSFQTLRTTV 331
Score = 107 bits (269), Expect = 1e-26
Identities = 39/195 (20%), Positives = 61/195 (31%), Gaps = 25/195 (12%)
Query: 190 TRSVIVSEGQTVYLYC-------YANGFPAPTISWRRDNSAALSTGGSIYR----GNILK 238
+ EG+ V L C +A+ P ++W +++SA G R L
Sbjct: 25 YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILECH 296
+ + D GTY C +N K +I + V + Q L +L C
Sbjct: 85 LLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP 143
Query: 297 -----VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
I W KD + + + +S T L V + G Y C
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS------VRGTTHLLVHDVALEDAGYYRC 197
Query: 352 KAANKYGSAQKEIEL 366
+ Q I
Sbjct: 198 VLTFAHEGQQYNITR 212
Score = 46.2 bits (109), Expect = 8e-06
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 12/118 (10%)
Query: 71 RTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLI 127
P I + + + C V P ++W + + + G +
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN----DTHIESAYPGGRV 280
Query: 128 IHDSRFQLTTDPE-TSTYILSIKEIQETDAGI-YKCEVIISLNNKVSAEVELIVRRPP 183
R + + + E L + D + +KC V N + V+
Sbjct: 281 TEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV---HNTLSFQTLRTTVKEHH 335
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 114 bits (287), Expect = 3e-30
Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 24/194 (12%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
PP I + +IVS+G+ L C A G P PTI W + + T R + + +P+
Sbjct: 9 PPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGG-ERVETDKDDPRSHRMLLPS 66
Query: 242 ------------ITKTDRGTYYCVAQNGVGRGMKRNIAVEV-EFAPVITINRPRQGQALQ 288
++ D G Y CVA+N +G + + ++EV N A+
Sbjct: 67 GSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVG 126
Query: 289 YDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
A++EC +P P I W KDG + + L + + G
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT--------IRGGKLMITYTRKSDAG 178
Query: 348 QYACKAANKYGSAQ 361
+Y C N G +
Sbjct: 179 KYVCVGTNMVGERE 192
Score = 94.9 bits (236), Expect = 5e-23
Identities = 57/221 (25%), Positives = 73/221 (33%), Gaps = 23/221 (10%)
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
SL P I + I + A L C A+ P + W K +
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYK-------GGERVE 51
Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIK--EIQETDAGIYKCEVIISLNNKVSAEVELIV 179
D R P S + L I D G+Y C L VS + L V
Sbjct: 52 TDK----DDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIY-RGNI 236
N V+V+ G+ + C G P PTISW++D S I RG
Sbjct: 108 AILRDDFRQNP-SDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
L I K+D G Y CV N VG + V P
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 114 bits (287), Expect = 5e-30
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 20/214 (9%)
Query: 172 SAEVELIVRRPPIIS--DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN-----SAA 224
+ + P + + V TV C A G P P+ISW ++
Sbjct: 2 DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61
Query: 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE----FAPVITINR 280
+ ++ L + ++ +DRG Y CV +N G +++ ++V P++
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120
Query: 281 PRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS------- 332
P A+ D C V + P I W+K + + + T +
Sbjct: 121 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA 180
Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
D LR+ + R G+Y C+A N G A+K L
Sbjct: 181 DVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 95.0 bits (236), Expect = 9e-23
Identities = 44/255 (17%), Positives = 74/255 (29%), Gaps = 57/255 (22%)
Query: 73 PTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGS 125
P + + K +A T +C A P + W+K +G
Sbjct: 12 PYWTRPERMDKKLLAVPAANTVRFRCP---AAGNPTPSISWLK--------------NGR 54
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV--- 179
+ R + L ++ + +D G Y C V NK + L V
Sbjct: 55 EFRGEHRIGGIKL-RHQQWSLVMESVVPSDRGNYTCVV----ENKFGSIRQTYTLDVLER 109
Query: 180 -RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--------- 229
PI+ + G V +C P I W + S G
Sbjct: 110 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 169
Query: 230 -------SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR 282
S+ L++ N+++ D G Y C A N +G ++ + V
Sbjct: 170 LKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVE 228
Query: 283 QGQALQYDAILECHV 297
+A + H
Sbjct: 229 ADEA----GSVHHHH 239
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 112 bits (281), Expect = 1e-29
Identities = 38/186 (20%), Positives = 63/186 (33%), Gaps = 13/186 (6%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
T L+C +Q + P + W++ + ++ S + D L
Sbjct: 18 LTGTLRCQLQVQGEPPEVHWLRDGQ-------ILELADSTQTQVPLGEDEQDDWIVVSQL 70
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
I +Q +D G Y+C V + VS + + P V+ L C
Sbjct: 71 RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL-EEPEDRTVAANTPFNLSCQ 129
Query: 207 ANGFPAPT-ISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
A G P P + W +D L+T L +P + ++ C A N G R
Sbjct: 130 AQGPPEPVDLLWLQDAV-PLATAPGHGPQRSLHVPGL--NKTSSFSCEAHNAKGVTTSRT 186
Query: 266 IAVEVE 271
+ V
Sbjct: 187 ATITVL 192
Score = 110 bits (276), Expect = 6e-29
Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 31/198 (15%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDN-------------SAALS 226
P + + ++ + G T L C P + W RD
Sbjct: 2 ESPFVG--NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 227 TGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQA 286
+ L+I ++ +D G Y C+ G + + V +E P P
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTV 118
Query: 287 LQY-DAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
L C + P P ++W++D V + + SL V +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR----------SLHVPGLN-- 166
Query: 345 QFGQYACKAANKYGSAQK 362
+ ++C+A N G
Sbjct: 167 KTSSFSCEAHNAKGVTTS 184
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 109 bits (274), Expect = 1e-28
Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 13/176 (7%)
Query: 94 CSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD--PETSTYILSIKEI 151
V + V W K+ ++ + L M +I + F+ D +T+ L +
Sbjct: 16 RRVSLGPEIEVSWFKLGPGEE-QVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74
Query: 152 QETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFP 211
+ G Y C + + +V+ + L V +P +S + + + + C N FP
Sbjct: 75 NISHDGNYLCRMKLG-ETEVTKQEHLSVVKPLTLS-VHSERSQFPDFSVLTVTCTVNAFP 132
Query: 212 APTISWRRDNSAALSTGGSIYRGN--------ILKIPNITKTDRGTYYCVAQNGVG 259
P + W + + + ++ K CV +N
Sbjct: 133 HPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 88.9 bits (220), Expect = 5e-21
Identities = 31/201 (15%), Positives = 51/201 (25%), Gaps = 40/201 (19%)
Query: 193 VIVSEGQTVYLYCYA---NGFPAPTISWRRDNSAA------------------LSTGGSI 231
V G+ V L Y + P +SW + I
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 232 YR---GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
+R L + + G Y C + G + + + V ++++ R
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDF 119
Query: 289 YDAILECHVEAYPPPAIVWIK----DGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
+ C V A+P P + W+ + N D SL V
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE--------KDGSLSVAVDLSL 171
Query: 345 QF---GQYACKAANKYGSAQK 362
C N A
Sbjct: 172 PKPWHLPVTCVGKNDKEEAHG 192
Score = 38.5 bits (89), Expect = 0.002
Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 15/92 (16%)
Query: 290 DAILECH---VEAYPPPAIVWIKDGVQIMNNQHYSVSH------------FATSDEFSDT 334
L + V P + W K G + H F +
Sbjct: 8 RVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTF 67
Query: 335 SLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
L V G Y C+ K+ L
Sbjct: 68 FLVVTAANISHDGNYLCRMKLGETEVTKQEHL 99
Score = 36.9 bits (85), Expect = 0.005
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 18/92 (19%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
T+S S+ + C+ + +P V W+ + +EP P + +G ++
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCT---VNAFPHPHVQWLMPE---GVEPAPTAANGGVMKE 158
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKC 161
+ S + + + C
Sbjct: 159 ---------KDGSLSVAVDLSLPKPWHLPVTC 181
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 108 bits (270), Expect = 7e-28
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 18/198 (9%)
Query: 88 QTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS-------RFQLT 136
+TA L C + W+ + ++ I + I+D+ R T
Sbjct: 16 ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75
Query: 137 TDPETST-YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
++ S +++ +Q +D G Y+C+V + + + L V P +
Sbjct: 76 SNDVKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKFLLTVLVKPSGTRCFV-DGSE 133
Query: 196 SEGQTVYLYCYA-NGFPAPTISWRRDNSAAL--STGGSIYRGNILKIPNITKTDRGTYYC 252
G L C G W++ + + + + ++ + N + GTY C
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSC 193
Query: 253 VAQNGVGRGMKRNIAVEV 270
QN VG + + ++V
Sbjct: 194 TVQNRVG-SDQCMLRLDV 210
Score = 90.9 bits (225), Expect = 2e-21
Identities = 41/223 (18%), Positives = 65/223 (29%), Gaps = 48/223 (21%)
Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT----ISWRRDNSAA-------- 224
L + P + + ++G+T YL C P I W S
Sbjct: 1 LSITTPE-------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVII 53
Query: 225 LSTGGSIYRGNI--------------------LKIPNITKTDRGTYYCVAQNGVGRGMKR 264
L +G IY + + N+ +D GTY C + G +
Sbjct: 54 LYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NK 112
Query: 265 NIAVEVEFAPVITINRPRQGQALQYDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVS 323
+ V P T + + D L+C + P W K +
Sbjct: 113 KFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA- 171
Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
E + + V G Y+C N+ GS Q + L
Sbjct: 172 ------EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 41.2 bits (96), Expect = 2e-04
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P+ + + ++I LKC + W K+ S +
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS-------------DSQTMPTP 168
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRP 182
T P ++S+K +G Y C V N+V + L V P
Sbjct: 169 WLAEMTSP-----VISVKNASSEYSGTYSCTV----QNRVGSDQCMLRLDVVPP 213
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 108 bits (271), Expect = 1e-27
Identities = 47/303 (15%), Positives = 91/303 (30%), Gaps = 55/303 (18%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
T + ++ ++ + CS+ + V D +++ P + S
Sbjct: 4 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD--QRLNPTVTYGNDSF--- 58
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
++ +S+ E C VI+ N + + P +
Sbjct: 59 -----------SAKASVSVTAEDE-GTQRLTCAVILG-NQSQETLQTVTIYSFPAPN-VI 104
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG- 248
VSEG V + C A+ P ++ + L + T D G
Sbjct: 105 LTKPEVSEGTEVTVKCEAH--PRAKVTLNGVPAQPLG-------PRAQLLLKATPEDNGR 155
Query: 249 TYYCVAQNGV-GRGMKRN--IAVEVEFAPVITINRPRQGQALQY--DAILECHVEAYPPP 303
++ C A V G+ + +N + V + P + C P P
Sbjct: 156 SFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP 215
Query: 304 AIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKE 363
+ +KDG + +T+ R G Y C+A + G +E
Sbjct: 216 ELKCLKDGTFPLP------------------IGESVTVTRDLEGTYLCRARSTQGEVTRE 257
Query: 364 IEL 366
+ +
Sbjct: 258 VTV 260
Score = 96.3 bits (239), Expect = 5e-23
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 14/139 (10%)
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNST-RSV 193
P L +K E + + C + + ++ + EL V P + + +
Sbjct: 136 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 195
Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
E C A G P P + +D + L G + +T+ GTY C
Sbjct: 196 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCR 246
Query: 254 AQNGVGRGMKRNIAVEVEF 272
A++ G + + V V
Sbjct: 247 ARSTQGEVTR-EVTVNVLS 264
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 106 bits (267), Expect = 2e-27
Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 24/190 (12%)
Query: 192 SVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAALSTGGS----IYRGNILKIPNITKT 245
V V EG+ + L C + W + T L I N+ +
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEAS 76
Query: 246 DRGTYYCVAQNGVGRGMK---------RNIAVEVEFAPVITINRPRQGQALQYDAILECH 296
D+G Y C + + I + + + LEC
Sbjct: 77 DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECF 136
Query: 297 VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
P P I W K + + S S L++ I+ G Y C+A N
Sbjct: 137 ALGNPVPDIRWRKVLEPMPSTAEIST---------SGAVLKIFNIQLEDEGIYECEAENI 187
Query: 357 YGSAQKEIEL 366
G + + +
Sbjct: 188 RGKDKHQARI 197
Score = 101 bits (254), Expect = 1e-25
Identities = 43/182 (23%), Positives = 61/182 (33%), Gaps = 24/182 (13%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L C Y + + + P+ I+M + + L
Sbjct: 24 KGMVLLCDPPYHFPDDLSYRWL---LNEFPVFITMDKRRFVSQT-----------NGNLY 69
Query: 148 IKEIQETDAGIYKC---------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG 198
I ++ +D G Y C V + P I + V G
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV-VQFKDVYALMG 128
Query: 199 QTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
Q V L C+A G P P I WR+ ST G +LKI NI D G Y C A+N
Sbjct: 129 QNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIR 188
Query: 259 GR 260
G+
Sbjct: 189 GK 190
Score = 43.3 bits (102), Expect = 3e-05
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 290 DAILECHVEAYPPPAIV--WIKDGVQIM--NNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
+L C + P + W+ + + ++ VS ++ +L + +E
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ-------TNGNLYIANVEASD 77
Query: 346 FGQYACKAANKYGSAQKEIELF 367
G Y+C ++ + +
Sbjct: 78 KGNYSCFVSSPSITKSVFSKFI 99
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 106 bits (265), Expect = 2e-27
Identities = 33/178 (18%), Positives = 51/178 (28%), Gaps = 12/178 (6%)
Query: 194 IVSEGQTVYLYCYANGFPAPTIS--WRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY 251
+ G + L C N W + G + + G Y
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYS 65
Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA-IVWIKD 310
CV +++ P + + + A+L C E+ PP W K
Sbjct: 66 CVFLPEPM----GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 311 GVQI-MNNQHYSVSHFATSDEFSDTSLRVITIERRQ-FGQYACKAANKYGSAQKEIEL 366
+ S S F S + L + + GQY C + GS Q I L
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 84.7 bits (209), Expect = 1e-19
Identities = 31/193 (16%), Positives = 56/193 (29%), Gaps = 44/193 (22%)
Query: 82 QIKDIAQTADLKCSVQYADDYPVI---WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD 138
++D+ L CS+ V W+K G ++ D+
Sbjct: 8 TVEDLGSKILLTCSLN-DSATEVTGHRWLK--------------GGVVLKEDA------- 45
Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEG 198
K + G Y C + + + PP + S ++EG
Sbjct: 46 --LPGQKTEFKVDSDDQWGEYSCVF----LPEPMGTANIQLHGPPRVKAVK-SSEHINEG 98
Query: 199 QTVYLYCYANGFP-APTISWRRDNSAALSTGGSIYRG----------NILKIPNIT-KTD 246
+T L C + P +W + + + + L I N+ + D
Sbjct: 99 ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 158
Query: 247 RGTYYCVAQNGVG 259
G Y C + G
Sbjct: 159 PGQYRCNGTSSKG 171
Score = 43.5 bits (102), Expect = 3e-05
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 25/116 (21%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLII 128
P + + + + +TA L C ++ P W K+ ++ + S
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCK---SESVPPVTDWAWYKITDSEDKALMNGS------- 133
Query: 129 HDSRFQLTTDPETSTYILSIKEIQ-ETDAGIYKCEVIISLNNKV---SAEVELIVR 180
+SRF +++ S L I+ + E D G Y+C + A + L VR
Sbjct: 134 -ESRFFVSSSQGRSE--LHIENLNMEADPGQYRCNG----TSSKGSDQAIITLRVR 182
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 106 bits (265), Expect = 1e-25
Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 33/231 (14%)
Query: 142 STYILSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQT 200
S + + D G + + L N + + P + T+ VSEG
Sbjct: 242 SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE-VSEGTE 300
Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV-G 259
V + C A+ T++ + L + + + ++ C A V G
Sbjct: 301 VTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAG 352
Query: 260 RGMKRNIAVE--VEFAPVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIM 315
+ + +N E V + P + C P P + +KDG +
Sbjct: 353 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 412
Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+T+ R G Y C+A + G +E+ +
Sbjct: 413 ------------------PIGESVTVTRDLEGTYLCRARSTQGEVTREVTV 445
Score = 89.2 bits (220), Expect = 1e-19
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 14/139 (10%)
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNST-RSV 193
P L +K E + + C + + ++ + EL V P + + +
Sbjct: 321 QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNW 380
Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCV 253
E C A G P P + +D + L G + +T+ GTY C
Sbjct: 381 TWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCR 431
Query: 254 AQNGVGRGMKRNIAVEVEF 272
A++ G + + V V
Sbjct: 432 ARSTQGEVTR-EVTVNVLS 449
Score = 85.3 bits (210), Expect = 2e-18
Identities = 35/294 (11%), Positives = 67/294 (22%), Gaps = 45/294 (15%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ + CS + PLP + L Y LS
Sbjct: 15 GSVLVTCSTSCDQPMLLGIET--------PLP-----------KKELLLPGNNRKVYELS 55
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
+ C + + +A+ L V P + + G+ + L C
Sbjct: 56 ----NVQEDSQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110
Query: 208 -NGFPAP--TISWRRDNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMK 263
G P T+ R + + C + +
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 264 RNIAVEVEFAPVITINRPRQGQALQY--------DAILECHVEAYPPPA---IVWIKDGV 312
+ T P L + C ++ P + +
Sbjct: 171 ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Query: 313 QIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
++ Y +D FS + +T E + C S + +
Sbjct: 231 RLNPTVTYG------NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 278
Score = 71.4 bits (174), Expect = 1e-13
Identities = 27/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK-TDR 247
S VI+ G +V + C + + L + GN K+ ++ +
Sbjct: 5 SPSKVILPRGGSVLVTCSTSCDQPMLLGIE----TPLPKKELLLPGNNRKVYELSNVQED 60
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPA-- 304
C + G+ + + V + P + + Q + + L C VE P A
Sbjct: 61 SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119
Query: 305 -IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQK 362
+V ++ ++ T+ + + R G ++C+
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVTT---------TVLVRRDHHGANFSCRTELDLRPQGL 170
Query: 363 EI 364
E+
Sbjct: 171 EL 172
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 107 bits (266), Expect = 2e-25
Identities = 38/313 (12%), Positives = 89/313 (28%), Gaps = 32/313 (10%)
Query: 80 QEQIKDIAQTADLKCSVQ-YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD 138
+ +D+ + C++ + + + + + + ++ + R L
Sbjct: 225 ELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ 284
Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR--PPIISDNSTRSVIVS 196
+ ++ + I +++ DAG Y C + + ++ S V
Sbjct: 285 DKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGV 344
Query: 197 EGQTVYLYCYANGFPAPTIS-WRRDNSAALSTGGSIYRGN-------------------- 235
G +V + C N + +I W A +
Sbjct: 345 AGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNG 404
Query: 236 --ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPR--QGQALQYDA 291
+ + +T D G Y+C+ I + + G+ L+
Sbjct: 405 TFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464
Query: 292 ILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ---FGQ 348
C +Y W G Q + +Q S + + + + + T+ G
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL-TLNLVTRADEGW 523
Query: 349 YACKAANKYGSAQ 361
Y C + +
Sbjct: 524 YWCGVKQGHFYGE 536
Score = 101 bits (253), Expect = 1e-23
Identities = 41/324 (12%), Positives = 86/324 (26%), Gaps = 32/324 (9%)
Query: 68 SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI 127
+ P + ++ D+ +T + C + + + + S
Sbjct: 108 EVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP 167
Query: 128 IHDSRFQLTTD-PETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPPII 185
+ R +L + + I +++ +DAG Y C+ S +NK +A+++++ P ++
Sbjct: 168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELV 227
Query: 186 SDNSTRSVIVSE------GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI-------Y 232
++ SV C + + A + G I
Sbjct: 228 YEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKD 287
Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ---ALQY 289
+ I + K D G Y C A + I F +
Sbjct: 288 GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347
Query: 290 DAILECHVEAYPPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV---------- 338
+ C +I W V + L +
Sbjct: 348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407
Query: 339 ITIERRQF---GQYACKAANKYGS 359
+ + + G Y C
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLW 431
Score = 98.5 bits (244), Expect = 1e-22
Identities = 50/327 (15%), Positives = 96/327 (29%), Gaps = 42/327 (12%)
Query: 88 QTADLKCSVQYA---DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+ + C W + L S + R LT PE T+
Sbjct: 16 NSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTF 75
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
+++I ++ + D+G YKC + I+ + +S +V L V + P + ++ T+ V G+TV +
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTIN 133
Query: 205 CYANGFPAPTISW---------------------RRDNSAALSTGGSIYRGNILKIPNIT 243
C A L G+ + I +
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL----QYDA------IL 293
+D G Y C A + + A P + ++
Sbjct: 194 LSDAGQYLCQAGDDSNS--NKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKF 251
Query: 294 ECHVEAYPPPAIVWIKDG-VQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
C + +V G ++ F S+ + + + G+Y C
Sbjct: 252 LCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF---SVVITGLRKEDAGRYLCG 308
Query: 353 AANKYGSAQKEIELFDRETQTGDETFP 379
A + + + + T P
Sbjct: 309 AHSDGQLQEGSPIQAWQLFVNEESTIP 335
Score = 80.8 bits (198), Expect = 1e-16
Identities = 39/256 (15%), Positives = 78/256 (30%), Gaps = 28/256 (10%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIW---MKMDTAKKMEPLPISMSGSLIIH 129
TI + + C + + + + + L S +
Sbjct: 332 STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQY 391
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
+ R L +P T+ + + ++ DAG Y C + + E+++I P +
Sbjct: 392 EGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP-- 449
Query: 190 TRSVIVSEGQTVYLYCY----ANGFPAPTISWRRDNSAAL-STGGSIYRGNI-------- 236
+V G+T+ + C+ + + W AL S + +
Sbjct: 450 -GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL 508
Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN-------RPRQGQAL 287
L + +T+ D G Y+C + G G + V VE + +
Sbjct: 509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKV 568
Query: 288 QYDAILECHVEAYPPP 303
E +A P
Sbjct: 569 LDSGFREIENKAIQDP 584
Score = 65.4 bits (158), Expect = 1e-11
Identities = 32/210 (15%), Positives = 66/210 (31%), Gaps = 36/210 (17%)
Query: 191 RSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNS-----AALSTGGSIYRGN------- 235
V EG +V + CY + W R + +S+ G +
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 236 --------ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
++ I +++ D G Y C RG+ ++++EV P + + L
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 288 QYDAILECHVEAYPPP--AIVWIKDGVQ-------IMNNQHYSVSHFATSDEFSDTSLRV 338
+ C + ++ + G+ + + L
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 339 ITIERRQF---GQYACKAANKYGSAQKEIE 365
+ I + + GQY C+A + S +K +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 101 bits (252), Expect = 2e-25
Identities = 33/200 (16%), Positives = 62/200 (31%), Gaps = 31/200 (15%)
Query: 193 VIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKTD 246
I S + + LY + ++W + SA + + G L+I T D
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSA-IRYSDRVKTGVTGEQIWLQINEPTPND 70
Query: 247 RGTYYCVAQNGVGR-------------------GMKRNIAVEVEFAPVITINRPRQGQAL 287
+G Y +G + A+ + + P
Sbjct: 71 KGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQ 130
Query: 288 Q-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
+ L C+V PPP + W+K+ + H ++ + + +
Sbjct: 131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNL----KFEAGRTAYFTINGVSTADS 186
Query: 347 GQYACKAANKYGSAQKEIEL 366
G+Y NKYGS + +
Sbjct: 187 GKYGLVVKNKYGSETSDFTV 206
Score = 96.9 bits (241), Expect = 8e-24
Identities = 42/206 (20%), Positives = 64/206 (31%), Gaps = 47/206 (22%)
Query: 82 QIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE 140
+I+ A+ L V Y + V W +GS I + R + E
Sbjct: 12 KIQSTAEGIQLYSFVTYYVEDLKVNWSH--------------NGSAIRYSDRVKTGVTGE 57
Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR-------------------- 180
L I E D G Y E+ V+L +
Sbjct: 58 QIW--LQINEPTPNDKGKYVMELF-DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK 114
Query: 181 -RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY------R 233
R ++ V + EG+ + L C G P P +SW ++ AL+ R
Sbjct: 115 NRARVLGG-LPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEK-ALAQTDHCNLKFEAGR 172
Query: 234 GNILKIPNITKTDRGTYYCVAQNGVG 259
I ++ D G Y V +N G
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNKYG 198
Score = 55.3 bits (133), Expect = 4e-09
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Query: 290 DAILECHVEAY-PPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
L V Y + W +G I + L++ G+
Sbjct: 19 GIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV-----TGEQIWLQINEPTPNDKGK 73
Query: 349 YACKAANKYGSAQKEIELFDRETQTGDETFP 379
Y + + QK ++L + F
Sbjct: 74 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ 104
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 101 bits (251), Expect = 1e-24
Identities = 43/251 (17%), Positives = 84/251 (33%), Gaps = 44/251 (17%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGS 125
SQ P ++ S + + ++ + C VQ ++ V W+ + +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 126 LIIHDSRFQ----LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRR 181
L + RFQ L D + L ++++Q+ D GIY CE+ + N + + + +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK-NESMVMKKPVELWV 120
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP---TISWRRDN----------------- 221
P R + V G T + C ++W +
Sbjct: 121 LP----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMR 176
Query: 222 ----------SAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
+ G I R + +K+ + ++D+G Y C G ++ I + V
Sbjct: 177 SGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHV 235
Query: 271 EFAPVITINRP 281
P
Sbjct: 236 VQDEFQRTISP 246
Score = 76.8 bits (188), Expect = 4e-16
Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 53/227 (23%)
Query: 189 STRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAA--------LSTGGSIYRGNI- 236
S+ + V G++V + C + W + S+ G
Sbjct: 11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQ 70
Query: 237 ---------------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
L + ++ K D G Y C + VE+ V+
Sbjct: 71 NRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELW---VLPEEPR 126
Query: 282 RQGQALQYDAILECHVEAYPPP---AIVWIKDGVQ-------IMNNQHYSVSHFATSDEF 331
+ + C +++ + W+ + + + F + F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 332 SDTSLRVITIERRQF------------GQYACKAANKYGSAQKEIEL 366
+ I R G Y C ++K I L
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 95.6 bits (238), Expect = 1e-24
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI 236
+P +++ RS V G V C A + PA T+ W R ++ L + + G I
Sbjct: 5 APSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-I 63
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEV 270
L I N+ +D GTY C N + V+V
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
Score = 56.7 bits (137), Expect = 1e-10
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 274 PVITINRPRQGQALQ-YDAILECHVEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
++T+ R D C ++ P +VW + + ++
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM----------D 59
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ L + ++ G Y C +N + Q L
Sbjct: 60 FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
Score = 39.4 bits (92), Expect = 2e-04
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 68 SSQRTPTISYISQEQIKDIA--QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSG 124
++ P + + +++ + + C+ + + W ++ LP
Sbjct: 4 AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNG----KLP----- 54
Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
SR IL+I+ +Q +DAG Y C N L V+
Sbjct: 55 ------SRAMDFNG------ILTIRNVQPSDAGTYVCTGS---NMFAMDQGTATLHVQ 97
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 99.0 bits (246), Expect = 2e-24
Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 9/192 (4%)
Query: 88 QTADLKCSVQYADDYPVIWMK---MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
L W K K++ + + + + S
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGS-- 72
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
L + I D G+Y ++ + A V V +P + V E +V L
Sbjct: 73 -LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLT 131
Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYR--GNILKIPNITKTDRGTYYCVAQNGVGRGM 262
C +N I W ++ + T +IL+I I + D G Y C N V
Sbjct: 132 CLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRR 190
Query: 263 KRNIAVEVEFAP 274
+I +++ F P
Sbjct: 191 SNSIKLDIIFDP 202
Score = 89.0 bits (220), Expect = 6e-21
Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 29/188 (15%)
Query: 195 VSEGQTVYLYCYANGFPAPTISWRRDNSA--------------------ALSTGGSIYRG 234
V+E V L + +W + N+ A S IY
Sbjct: 11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD-AIL 293
L IT D G Y + R + + V + + D L
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
C I W+ + + + ++S +++ LR+ I+R G+Y C+
Sbjct: 131 TCLSND-IGANIQWLFNSQSLQLTERMTLSQ-------NNSILRIDPIKREDAGEYQCEI 182
Query: 354 ANKYGSAQ 361
+N +
Sbjct: 183 SNPVSVRR 190
Score = 38.9 bits (90), Expect = 0.001
Identities = 11/84 (13%), Positives = 24/84 (28%), Gaps = 11/84 (13%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE-----------FSDTSLRV 338
+ +L H A W K ++ + + + +S+ SL
Sbjct: 16 NVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLF 75
Query: 339 ITIERRQFGQYACKAANKYGSAQK 362
I + G Y ++ +
Sbjct: 76 QMITMKDMGVYTLDMTDENYRRTQ 99
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 95.7 bits (237), Expect = 6e-23
Identities = 34/235 (14%), Positives = 62/235 (26%), Gaps = 48/235 (20%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPL-----PISMSG 124
T+ E T +L CS Q A+D + W+K + + + G
Sbjct: 3 MTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEG 62
Query: 125 SLIIHDSRFQLT--------TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVE 176
+ ++ + + + L + + D G Y C+V
Sbjct: 63 LGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDA 122
Query: 177 LIVRR-------PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
V + ++ V V EG + + C ++W + +
Sbjct: 123 KSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYET 182
Query: 230 SIYR-------------------------GNILKIPNITKTDRGTYYCVAQNGVG 259
Y+ L I TD G +C G G
Sbjct: 183 GTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG 237
Score = 85.0 bits (209), Expect = 4e-19
Identities = 37/236 (15%), Positives = 58/236 (24%), Gaps = 60/236 (25%)
Query: 191 RSVIVSEGQTVYLYC---YANGFPAPTISWRRDNSA-----------ALSTGGSIYR--- 233
V V G TV L C AN P ISW + S G +
Sbjct: 10 TEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESD 69
Query: 234 -------------------GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-- 272
L++ ++ D G Y+C R A V
Sbjct: 70 SYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 273 -----APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
+ + ++ Q + D + C + W N + + A
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189
Query: 327 TSDEFSDTSLRVITIERRQF----------------GQYACKAANKYGSAQKEIEL 366
++F T R F G+ C+ A G +
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Score = 31.8 bits (71), Expect = 0.26
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 29/116 (25%)
Query: 275 VITINRPRQGQALQY--DAILECHVEA---YPPPAIVWIKDGVQIMNNQHYSVSHFATSD 329
++T+ + L C + PP I W+K + + + ++ +
Sbjct: 2 IMTVRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGE 61
Query: 330 ------------------------EFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
+ +LR+ + + G+Y C+ A +
Sbjct: 62 GLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 93.0 bits (231), Expect = 1e-22
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
E + L+I + D+G YKC+ S V L V ++ S + +V EGQ
Sbjct: 47 EETNSSLNIVNAKFEDSGEYKCQHQ---QVNESEPVYLEVFSDWLLLQAS--AEVVMEGQ 101
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
++L C+ + + + +D A Y + + I N T D GTYYC +
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDGEAL----KYWYENHNISITNATVEDSGTYYCTGKVWQ 157
Query: 259 GRGMKRNIAVEVEFAP 274
+ + V AP
Sbjct: 158 LDYESEPLNITVIKAP 173
Score = 84.9 bits (210), Expect = 1e-19
Identities = 33/186 (17%), Positives = 57/186 (30%), Gaps = 28/186 (15%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNIL 237
V + P +S N + +G+ V L C N F + W + S + T S L
Sbjct: 1 VPQKPKVSLNP-PWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS------L 53
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECH 296
I N D G Y C Q + V +E + + ++ L CH
Sbjct: 54 NIVNAKFEDSGEYKCQHQQVN-----ESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108
Query: 297 VEA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
+ +++ KDG + + ++ + G Y C
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWY-------------ENHNISITNATVEDSGTYYCTGKV 155
Query: 356 KYGSAQ 361
+
Sbjct: 156 WQLDYE 161
Score = 43.3 bits (102), Expect = 2e-05
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ +SI D+G Y C + + S + + V + P
Sbjct: 129 YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 42.2 bits (99), Expect = 7e-05
Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 274 PVITINRPRQGQALQYDAI-LECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEF 331
P +++N P + + + + L C+ + + W +G E
Sbjct: 5 PKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS---------------EE 48
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
+++SL ++ + G+Y C+ S +E+F
Sbjct: 49 TNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVF 84
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 92.2 bits (229), Expect = 2e-22
Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
T T + D+G Y C+ +S V L V ++ T + EG+
Sbjct: 47 PTHTQPSYRFKANNNDSGEYTCQTG---QTSLSDPVHLTVLFEWLVL--QTPHLEFQEGE 101
Query: 200 TVYLYCYAN-GFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
T+ L C++ P +++ ++ + + IP + G Y+C G
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKS----QKFSHLDPTFSIPQANHSHSGDYHCTGNIGY 157
Query: 259 GRGMKRNIAVEV 270
+ + + V
Sbjct: 158 TLFSSKPVTITV 169
Score = 86.8 bits (215), Expect = 1e-20
Identities = 24/184 (13%), Positives = 47/184 (25%), Gaps = 32/184 (17%)
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
++ + V + +V L C P +I W + + +
Sbjct: 5 AVLKLEP-PWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP------SYRFK 57
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQ---GQALQYDAILECHVE 298
D G Y C + + V F ++ + G+ +L CH
Sbjct: 58 ANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLEFQEGE----TIMLRCHSW 110
Query: 299 A-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
P + + ++G + D + + G Y C Y
Sbjct: 111 KDKPLVKVTFFQNGKSQKFSH-------------LDPTFSIPQANHSHSGDYHCTGNIGY 157
Query: 358 GSAQ 361
Sbjct: 158 TLFS 161
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 26/112 (23%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLII 128
+ + + +T L+C V + + + S
Sbjct: 84 LFEWLVLQTPHLEFQ-EGETIMLRCHSWKDKPLVKVTFFQNG-----KSQKFSHLDP--- 134
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
SI + + +G Y C I S V + V+
Sbjct: 135 ----------------TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 93.0 bits (231), Expect = 2e-22
Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 10/150 (6%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
+ I D+G Y+C+ + +S V+L V ++ + E
Sbjct: 50 SSQASSYFIDAATVDDSGEYRCQTQ---LSTLSDPVQLEVHIGWLLL--QAPRWVFKEED 104
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
++L C++ +++ ++ + + IP T D G+Y+C G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGR----KYFHHNSDFYIPKATLKDSGSYFCRGLVGS 160
Query: 259 GRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
+ + + ++ Q
Sbjct: 161 KNVSSETVQITITQGLAVSTISSFFPPGYQ 190
Score = 76.5 bits (188), Expect = 2e-16
Identities = 26/182 (14%), Positives = 50/182 (27%), Gaps = 32/182 (17%)
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPN 241
++ V E +V L C P + W + S S S I
Sbjct: 8 AVVFLEPQWYR-VLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS------YFIDA 60
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVE 298
T D G Y C Q + + +EV ++ ++ + L CH
Sbjct: 61 ATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPRWVFKEEDPIH----LRCHSW 113
Query: 299 AYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKY 357
+ ++++G ++ + + G Y C+
Sbjct: 114 KNTALHKVTYLQNGKGRKYFH-------------HNSDFYIPKATLKDSGSYFCRGLVGS 160
Query: 358 GS 359
+
Sbjct: 161 KN 162
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 92.4 bits (229), Expect = 3e-22
Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 15/193 (7%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD-PETSTYIL 146
+ L+C + + ++ K + R L + +
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSL--------QSERATLLEEQLPLGKALF 69
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
I +Q D+G Y+C VI L V+ TR + V V L C
Sbjct: 70 HIPSVQVRDSGQYRCLVI---CGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQ 126
Query: 207 ANGFPAPTISWRRDNSAALSTGGSIYRG--NILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
A G+P +SW+ + A ++ G + + + + C+ N + +
Sbjct: 127 ARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTS 186
Query: 265 -NIAVEVEFAPVI 276
I P +
Sbjct: 187 AIIDPLSRMEPKV 199
Score = 92.4 bits (229), Expect = 3e-22
Identities = 31/189 (16%), Positives = 56/189 (29%), Gaps = 26/189 (13%)
Query: 193 VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-------------LKI 239
V G +V L C + + R + + S+ I
Sbjct: 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHI 71
Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI-LECHVE 298
P++ D G Y C+ G K + V+ R + + L C
Sbjct: 72 PSVQVRDSGQYRCLVICGAAWDYKY---LTVKVKASYMRIDTRILEVPGTGEVQLTCQAR 128
Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE-FSDTSLRVITIERRQFGQYACKAANKY 357
YP + W V + SH T + + TS V+ ++ + ++C N +
Sbjct: 129 GYPLAEVSWQNVSVPA------NTSHIRTPEGLYQVTS--VLRLKPQPSRNFSCMFWNAH 180
Query: 358 GSAQKEIEL 366
+
Sbjct: 181 MKELTSAII 189
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 91.5 bits (227), Expect = 4e-22
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 10/132 (7%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
+ I D+G Y+C+ + +S V+L V ++ + E
Sbjct: 50 SSQASSYFIDAATVNDSGEYRCQTN---LSTLSDPVQLEVHIGWLLL--QAPRWVFKEED 104
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV 258
++L C++ +++ ++ + + IP T D G+Y+C G
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDR----KYFHHNSDFHIPKATLKDSGSYFCRGLVGS 160
Query: 259 GRGMKRNIAVEV 270
+ + +
Sbjct: 161 KNVSSETVNITI 172
Score = 79.9 bits (197), Expect = 5e-18
Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 32/187 (17%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIP 240
++ V E +V L C P + W + S S S I
Sbjct: 7 KAVVFLEPQWYS-VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS------YFID 59
Query: 241 NITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHV 297
T D G Y C + +EV ++ ++ + L CH
Sbjct: 60 AATVNDSGEYRCQTNLSTLS---DPVQLEVHIGWLLLQAPRWVFKEEDPIH----LRCHS 112
Query: 298 EA-YPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANK 356
+ ++++G ++ + + G Y C+
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFH-------------HNSDFHIPKATLKDSGSYFCRGLVG 159
Query: 357 YGSAQKE 363
+ E
Sbjct: 160 SKNVSSE 166
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 91.8 bits (227), Expect = 6e-22
Identities = 29/174 (16%), Positives = 55/174 (31%), Gaps = 6/174 (3%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGNILKIPNITKTDRGTY 250
+ G +V L C G +P SWR + L+ + + L + ++ + +Y
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY 69
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA---IVW 307
C A + +++ I VE+ P ++C V P I
Sbjct: 70 LCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDL 128
Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
+K +M +Q + S E + + C+A
Sbjct: 129 LKGD-HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
Score = 65.6 bits (159), Expect = 1e-12
Identities = 20/155 (12%), Positives = 48/155 (30%), Gaps = 19/155 (12%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
E +T L++ + + Y C + K+ +++ + P + S + G+
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLC-TATCESRKLEKGIQVEIYSFPKDPE-IHLSGPLEAGK 107
Query: 200 TVYLYCYANG---FPAPTISWRRDN-------SAALSTGGSIYRGNILKIPNITKTDRG- 248
+ + C F I + + + S+ ++ D G
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 249 TYYCVAQNGVG------RGMKRNIAVEVEFAPVIT 277
C A+ + + ++V +P T
Sbjct: 168 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 91.5 bits (227), Expect = 7e-22
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 38/206 (18%)
Query: 191 RSVIVSEGQTVYLYCYA-NGFPAPTISWRRDNSA---------ALSTGGSIYRGNILKIP 240
+V + E V + A +++ + + I + +
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE---MFME 66
Query: 241 NITKTDRGTYYCVAQNGVGRGM-----------KRNIAVEVEFAPVITINRPRQGQALQ- 288
+ D GTY Q+G K E + I P + L
Sbjct: 67 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 126
Query: 289 -----YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
+ +L+C V IVW KD +I ++ + +L +
Sbjct: 127 EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-------GICTLLITEFS 179
Query: 343 RRQFGQYACKAANKYGSAQKEIELFD 368
++ G Y + G + ++L D
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 85.0 bits (210), Expect = 2e-19
Identities = 29/159 (18%), Positives = 56/159 (35%), Gaps = 25/159 (15%)
Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV-------------IISLNNK 170
I ++++ D T + ++++Q+ D G Y ++ + + K
Sbjct: 41 EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100
Query: 171 VSAEVEL-----IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAA 224
+ E E I ++ P + S V+ V L C T I W +D
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDE-RE 157
Query: 225 LSTGGSIYRGN---ILKIPNITKTDRGTYYCVAQNGVGR 260
+S + L I +K D G Y + ++ G+
Sbjct: 158 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK 196
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 88.4 bits (219), Expect = 6e-21
Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 23/176 (13%)
Query: 88 QTADLKCS-VQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
Q +L Q +DD I W K KK+ ++L +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKE--KETFKEKDTYKLFKN-----GT 67
Query: 146 LSIKEIQETDAGIYKCEVIISL-NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
L IK ++ D IYK + + N + +L ++ ++ I L
Sbjct: 68 LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV------SKPKISWTCINTTLT 121
Query: 205 CYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
C P ++ +D L + T + + C A N V +
Sbjct: 122 CEVMNGTDPELNLYQDGK-HLKLSQRVI------THKWTTSLSAKFKCTAGNKVSK 170
Score = 78.8 bits (194), Expect = 2e-17
Identities = 27/200 (13%), Positives = 56/200 (28%), Gaps = 43/200 (21%)
Query: 186 SDNSTRSVIVSEGQTVYLYC--YANGFPAPTISWRRDNS----AALSTGGSIYRGN---- 235
+ + GQ + L + I W + + A ++
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 236 -----ILKIPNITKTDRGTYYCVAQNGVGRGMKR---NIAVEVEFA-PVITINRPRQGQA 286
LKI ++ D+ Y + G+ + ++ ++ + P I+
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWT------- 114
Query: 287 LQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
+ L C V P + +DG + +Q + TS
Sbjct: 115 -CINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLS---------------- 157
Query: 347 GQYACKAANKYGSAQKEIEL 366
++ C A NK +
Sbjct: 158 AKFKCTAGNKVSKESSVEPV 177
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 89.5 bits (221), Expect = 7e-21
Identities = 38/205 (18%), Positives = 63/205 (30%), Gaps = 26/205 (12%)
Query: 88 QTADLKCSVQYADD-YPVIWMKMDTAKKMEPLPISMSGS----LIIHDSRFQLTTDPETS 142
++ L C+ D Y + W D + L + + +HD+R + S
Sbjct: 16 KSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDS 75
Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP---IISDNSTRSVIVSEGQ 199
L + E Q D Y C V A L V P +S N ++ +
Sbjct: 76 QGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSA 135
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNI-----------------LKIPN 241
C + NG PAP I+W R+ G + L +
Sbjct: 136 QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNI 266
+++C A + G +
Sbjct: 196 RKDDRDASFHCAAHYSLPEGRHGRL 220
Score = 67.9 bits (165), Expect = 3e-13
Identities = 36/245 (14%), Positives = 65/245 (26%), Gaps = 52/245 (21%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISW----------------- 217
E+ + PP V V G++V L C G + W
Sbjct: 1 EVRLSVPP--------LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52
Query: 218 -------RRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
++ S + L + D Y CV + G + + V
Sbjct: 53 QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
Query: 271 EFAP---VITINRPRQGQAL-QYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHF 325
P ++ N+ I C+ P P I W ++G ++ + +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 326 ATSDE-------FSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIELFDRETQTGDET 377
TS S TS + + + + C A + +
Sbjct: 173 MTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGR------HGRLDSPTFH 226
Query: 378 FPIFY 382
+ Y
Sbjct: 227 LTLHY 231
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 88.2 bits (218), Expect = 2e-20
Identities = 29/206 (14%), Positives = 60/206 (29%), Gaps = 19/206 (9%)
Query: 88 QTADLKCSVQY-----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTD---P 139
+ L C +Q + W + + M G R +
Sbjct: 15 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVF-HQTQGPSYSESKRLEFVAARLGA 73
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
E L + ++ D G Y C + S ++ L V P + V ++
Sbjct: 74 ELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ-KVQLTGEP 132
Query: 200 TVYLYCYA-NGFPAPTISWRRDNSAALST-------GGSIYRGNILKIPNITKTDRGTYY 251
C + G P I+W D T G++ ++ + ++ D
Sbjct: 133 VPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVT 192
Query: 252 CVAQN-GVGRGMKRNIAVEVEFAPVI 276
C ++ + +++ V +
Sbjct: 193 CKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 64.3 bits (156), Expect = 4e-12
Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 32/193 (16%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSA------ALSTGGSI---YRGNI- 236
V G +V L CY ++W R + + G S R
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 237 ------------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG 284
L++ + D G+Y C+ +I + V P T +
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 285 QALQYDAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIER 343
+ + C PP I W D + S + TSL ++
Sbjct: 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGF---LSGTVTVTSLWILVPSS 184
Query: 344 RQFGQ-YACKAAN 355
+ G+ CK +
Sbjct: 185 QVDGKQVTCKVEH 197
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 87.4 bits (216), Expect = 3e-20
Identities = 36/208 (17%), Positives = 62/208 (29%), Gaps = 26/208 (12%)
Query: 88 QTADLKCSVQYADDYP-----VIWMKMDTA-----KKMEPLPISMSGSLIIHDSRFQLTT 137
++C V W D E L + S + R +L
Sbjct: 17 SNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS----YRQRARLLK 72
Query: 138 DPETS-TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
D + L I +++ DAG+Y+C +IS + + V P + V+
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRC--MISYGGADYKRITVKVNAPYNKINQRI-LVVDP 129
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG-------NILKIPNITKTDRGT 249
L C A G+P + W + LS + N+ I T
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEI 189
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
+YC + + + P+
Sbjct: 190 FYCTFRRLDP-EENHTAELVIPELPLAH 216
Score = 80.0 bits (197), Expect = 1e-17
Identities = 34/203 (16%), Positives = 60/203 (29%), Gaps = 31/203 (15%)
Query: 192 SVIVSEGQTVYLYCYANGFPAP-----TISWRRDNSAALS-------------------- 226
+V G + + C + W ++ +
Sbjct: 10 LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR 69
Query: 227 -TGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG 284
+ GN L+I ++ D G Y C+ G G KR I V+V R
Sbjct: 70 LLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKR-ITVKVNAPYNKINQRILVV 127
Query: 285 QALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERR 344
+ + L C E YP ++W Q+++ + + + F+ TS + I
Sbjct: 128 DPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTS--TLRINTT 185
Query: 345 QFGQYACKAANKYGSAQKEIELF 367
+ C EL
Sbjct: 186 TNEIFYCTFRRLDPEENHTAELV 208
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 82.6 bits (204), Expect = 2e-19
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTG 228
+ L V PPIIS ST++ G+ + C+ P P I+W + S
Sbjct: 2 SSGSSGTLTVNGPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 229 GSIYRG----------NILKIPNITKTDRGTYY-CVAQNGVGRGMKRNIAVEVEFAPV 275
Y + L I NI + D T Y C A N G I ++ + + +
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKEQGSEM 116
Score = 68.0 bits (166), Expect = 3e-14
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 263 KRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPP-AIVWIKDGVQIM--N 316
+ + V P+I+ + G+ ++C + + PPP I W +
Sbjct: 4 GSSGTLTVNGPPIISSTQTQHALHGE----KGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEIEL 366
+ Y+V +T + ++L + I R F Y C A N +GS + I L
Sbjct: 60 SGRYTVETISTEEGVI-STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRL 109
Score = 36.4 bits (84), Expect = 0.003
Identities = 23/123 (18%), Positives = 39/123 (31%), Gaps = 22/123 (17%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP--VIWMKMDTAKKMEPLPISMSGSLIIHD 130
P IS +Q Q + +KC ++ + P + W + L SG +
Sbjct: 15 PIISS-TQTQHALHGEKGQIKCFIR-STPPPDRIAWSWKE-----NVLESGTSGRYTVET 67
Query: 131 SRFQLTTDPETSTYILSIKEIQETD-AGIYKCEVIISLNNKV---SAEVELIVRRPPIIS 186
+ E L+I I D IY C N + + L + +
Sbjct: 68 I-----STEEGVISTLTISNIVRADFQTIYNCTAW----NSFGSDTEIIRLKEQGSEMSG 118
Query: 187 DNS 189
+S
Sbjct: 119 PSS 121
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 83.1 bits (205), Expect = 7e-19
Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 11/176 (6%)
Query: 88 QTADLKCSVQY-ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
++ L + W+ +T+ + S + + + + + T +Y L
Sbjct: 14 ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF-TQSYSL 72
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
+ ++ D G Y+ ++ + K+S+ I+R+ I + + + ++L C
Sbjct: 73 QLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCS 132
Query: 207 A-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDR-GTYYCVAQNGVGR 260
+ + W G ++ L + + Y C+A+N V
Sbjct: 133 VEDADDNVSFRWEAL-------GNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSN 181
Score = 58.5 bits (141), Expect = 3e-10
Identities = 27/200 (13%), Positives = 52/200 (26%), Gaps = 37/200 (18%)
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAAL-------------------STG 228
+ V G++V L + G I+W + ++
Sbjct: 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63
Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ 288
+ + L++ N+ D G+Y + + I + Q
Sbjct: 64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123
Query: 289 YDAI-LECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQF 346
+ L C VE A + W G + + + +VS
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRIS---------------SE 168
Query: 347 GQYACKAANKYGSAQKEIEL 366
Y C A N + +
Sbjct: 169 QDYTCIAENAVSNLSFSVSA 188
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 80.6 bits (199), Expect = 8e-19
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK 238
PP I + +IVS+G+ L C A G P PTI W + + T R + +
Sbjct: 6 EDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGE-RVETDKDDPRSHRML 63
Query: 239 IPN------------ITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
+P+ ++ D G Y CVA+N +G + + ++EV A
Sbjct: 64 LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
Score = 65.6 bits (160), Expect = 2e-13
Identities = 27/102 (26%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 269 EVEFAPVITINRP-----RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
+ +F P I P +G+ A L C E P P I W K G ++ ++ S
Sbjct: 5 QEDFPPRIVE-HPSDLIVSKGE----PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRS 59
Query: 324 HFATSDEFSDTSLRVITIERRQF-----GQYACKAANKYGSA 360
H SL + I + G Y C A N G A
Sbjct: 60 HRML---LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Score = 38.6 bits (90), Expect = 4e-04
Identities = 27/124 (21%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
SL P I + I + A L C A+ P + W K +
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCK---AEGRPTPTIEWYKGGE-------RVE 51
Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIKEI--QETDAGIYKCEVIISLNNKVSAEVELIV 179
D R P S + L I D G+Y C L VS + L V
Sbjct: 52 TDKD----DPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Query: 180 RRPP 183
Sbjct: 108 AAAA 111
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 82.6 bits (203), Expect = 1e-18
Identities = 32/207 (15%), Positives = 51/207 (24%), Gaps = 42/207 (20%)
Query: 184 IISDNSTRSVIVS-EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNI 242
I N V E +V L C A I+W +D + +
Sbjct: 3 SIKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE---DKKKWNLGSN 56
Query: 243 TKTDRGTYYCVAQNGVGRGMK-----------RNIAVEVEFAPVITINRPRQGQALQYD- 290
K RG Y C + ++ + A + + A + +
Sbjct: 57 AKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGG 116
Query: 291 --------------AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
IL C YP I+W + I ++ + L
Sbjct: 117 ITQTPYKVSISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNI------GSDEDHL 168
Query: 337 RVITI-ERRQFGQYACKAANKYGSAQK 362
+ E Q G Y C
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDAN 195
Score = 57.2 bits (137), Expect = 7e-10
Identities = 17/149 (11%), Positives = 36/149 (24%), Gaps = 31/149 (20%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLNNKV-----------SAEVELIVRRPPIISDN 188
++ + G+Y+C+ + + + + +
Sbjct: 45 TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAK 104
Query: 189 STRSVIVSE--------------GQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSI 231
S E G TV L C P I W+ ++
Sbjct: 105 KDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIG 162
Query: 232 YRGNILKIPNITKT-DRGTYYCVAQNGVG 259
+ L + ++ G Y C +
Sbjct: 163 SDEDHLSLKEFSELEQSGYYVCYPRGSKP 191
Score = 31.8 bits (71), Expect = 0.28
Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 18/93 (19%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
T L C + ++W + I D + E +
Sbjct: 129 TTVILTCPQYPGSE--ILWQH--------------NDKNIGGDEDDKNIGSDEDHLSLKE 172
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
E++ +G Y C S + + L R
Sbjct: 173 FSELE--QSGYYVCYPRGSKPEDANFYLYLRAR 203
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 81.8 bits (201), Expect = 3e-18
Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 13/197 (6%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAALSTGGSIYRGNI---L 237
+ + + ++ +TV + C + +S R G+ +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV--ITINRPRQGQALQYDAI-LE 294
IP+ + G +C A+ V V + + ++ + + + L
Sbjct: 67 TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126
Query: 295 CHVEAYP--PPAIVWIKDGVQIMNN---QHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
C W + + + + + ++L + + R G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186
Query: 350 ACKAANKYGSAQKEIEL 366
C A++ + + +
Sbjct: 187 TCAASSGLMTKKNSTFV 203
Score = 80.6 bits (198), Expect = 7e-18
Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 34/205 (16%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+T + C ++ V + G+ I DS+ T
Sbjct: 25 KTVVIPCLGSISN-LNVSLCA-----RYPEKRFVPDGNRISWDSKKGFT----------- 67
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI--ISDNSTRSVIVSEGQTVYLYC 205
I + AG+ CE I+ + S ++V I + + + + +S G+ + L C
Sbjct: 68 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 127
Query: 206 YANGFP--APTISWRRDNSAALSTGGSIYR------------GNILKIPNITKTDRGTYY 251
A +W +S + L I +T++D+G Y
Sbjct: 128 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 187
Query: 252 CVAQNGVGRGMKRNIAVEVEFAPVI 276
C A +G+ K + V V P+
Sbjct: 188 CAASSGLMT-KKNSTFVRVHEDPIE 211
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 77.9 bits (192), Expect = 5e-18
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 270 VEFAPVIT-INRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATS 328
V FAP IT + P + V+ P PA+ W +G + +++ T+
Sbjct: 1 VHFAPTITFLESPTSDH----HWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
L++ G Y A N+YG +K+I
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA 94
Score = 58.6 bits (142), Expect = 4e-11
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA---------ALSTGG 229
V P I+ + + + G P P + W + + +
Sbjct: 1 VHFAPTITFLES----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 230 SIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
L++ N T + G Y +A+N G+ ++ I+ P I
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
Score = 39.0 bits (91), Expect = 2e-04
Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 27/119 (22%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
PTI+++ + D + +V+ P + W +G+++
Sbjct: 5 PTITFL-ESPTSD--HHWCIPFTVK---GNPKPALQWFY--------------NGAILNE 44
Query: 130 DSRFQLTTDPETSTY---ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
T L + + G Y K ++ P I
Sbjct: 45 SKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEY-GKDEKQISAHFMGWPGI 102
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 78.3 bits (193), Expect = 5e-18
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKI 239
PP+I + V+ T L C A G P PTI WR+D + +L+I
Sbjct: 8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
D G Y C+A G + +EV+ V
Sbjct: 67 RYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQEFGVPVQ 104
Score = 60.9 bits (148), Expect = 8e-12
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEF 331
PVI Q A+ +L C P P I+W KDGV + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ--------L 59
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ L++ + G+Y C A+ G A +
Sbjct: 60 ENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 42.4 bits (100), Expect = 3e-05
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 21/115 (18%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P I Q + T L C P I W K + DS
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVL-------------VSTQDS 54
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
R + E L I+ + D G Y C + + + + + + V+ +
Sbjct: 55 RIKQL---ENGV--LQIRYAKLGDTGRYTC-IASTPSGEATWSAYIEVQEFGVPV 103
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 77.0 bits (190), Expect = 8e-18
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNILKI 239
PPII + ++ T L C A G P P ISW ++ +I L+I
Sbjct: 8 PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66
Query: 240 PNITKTDRGTYYCVAQNGVG 259
N+ +D GTY CVA + G
Sbjct: 67 KNLRISDTGTYTCVATSSSG 86
Score = 57.8 bits (140), Expect = 5e-11
Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDEF 331
P+I Q A+ A+L+C P P I W+K+G + ++
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI--------Q 59
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+L++ + G Y C A + G L
Sbjct: 60 EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 41.2 bits (97), Expect = 4e-05
Identities = 30/108 (27%), Positives = 39/108 (36%), Gaps = 21/108 (19%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P I Q + TA LKC D PVI W+K + D
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKAT-GDPLPVISWLKEG-------------FTFPGRDP 54
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
R + E T L IK ++ +D G Y C V S + + S L V
Sbjct: 55 RATIQ---EQGT--LQIKNLRISDTGTYTC-VATSSSGETSWSAVLDV 96
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 76.6 bits (189), Expect = 1e-17
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
S + G T+ L C A G P P W ++ L+ + +P + +GTY
Sbjct: 11 TSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL-PLTHETK----KLYMVPYVDLEHQGTY 65
Query: 251 YCVAQNGVGRGMKRNIAVEVE 271
+C N + + + ++
Sbjct: 66 WCHVYNDRDSQDSKKVEIIID 86
Score = 50.0 bits (120), Expect = 2e-08
Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 18/74 (24%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQI--MNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
+L+C P P W K+ + + + Y V + + G
Sbjct: 20 TLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQ----------------G 63
Query: 348 QYACKAANKYGSAQ 361
Y C N S
Sbjct: 64 TYWCHVYNDRDSQD 77
Score = 35.0 bits (81), Expect = 0.006
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 31/114 (27%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
I Q T L+C A P W K + PL ++
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCV---AVGSPIPHYQWFKNEL-----PLTHETKKLYMVP 55
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ G Y C V +++ S +VE+I+
Sbjct: 56 Y--------------------VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 76.6 bits (189), Expect = 1e-17
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 174 EVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR 233
++ ++ R P I+ N + S G+++ + C A+G P P I W +DN + G + +
Sbjct: 2 QLTVLERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 234 GNI--LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
L I + K D G Y C A + +G K +E A T
Sbjct: 61 DGNRNLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105
Score = 68.5 bits (168), Expect = 1e-14
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 264 RNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVS 323
R + V AP IT N Q ++ + C PPP I+W KD ++ + +
Sbjct: 1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK 60
Query: 324 HFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ +L + + + G Y C+A + G A+ E
Sbjct: 61 D-------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 96
Score = 41.9 bits (99), Expect = 3e-05
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 25/121 (20%)
Query: 70 QRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLII 128
+ PTI+ + Q I ++ ++ C+ + P I W K ++
Sbjct: 8 RVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFK--------------DNETLV 52
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIIS 186
DS L L+I+ +++ D G+Y C+ + E I+ +
Sbjct: 53 EDSGIVLKDGNRN----LTIRRVRKEDEGLYTCQAC---SVLGCAKVEAFFIIEGAQEKT 105
Query: 187 D 187
+
Sbjct: 106 N 106
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 79.1 bits (194), Expect = 2e-17
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 21/201 (10%)
Query: 88 QTADLKCSVQY-------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTT 137
+ CS Y + V W + + + + + RF+L
Sbjct: 16 LCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG 75
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNSTRSVI 194
D + LSI + + D G Y V + K ++ L V D
Sbjct: 76 DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LEP 134
Query: 195 VSEGQTVYLYC----YANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
+ G+ L C P T SW + + R + L + +
Sbjct: 135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALS--PLDPETTRSSELTLTPRPEDHGTNL 192
Query: 251 YCVAQNGVGRG-MKRNIAVEV 270
C + + +R + + V
Sbjct: 193 TCQMKRQGAQVTTERTVQLNV 213
Score = 49.1 bits (116), Expect = 4e-07
Identities = 31/213 (14%), Positives = 56/213 (26%), Gaps = 48/213 (22%)
Query: 191 RSVIVSEGQTVYLYCY-------ANGFPAPTISWRRDNSAALSTG--------------- 228
+SV V EG V + C P + W RD
Sbjct: 8 KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPET 67
Query: 229 -------GSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGR-------GMKRNIAVEVEFA 273
G + + N L I + D G+Y+ + G + + +E
Sbjct: 68 QGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKP 127
Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
+ + G+ + L EA PP W + + ++ + S
Sbjct: 128 DIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSE--------- 178
Query: 334 TSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
L + C+ + E +
Sbjct: 179 --LTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 78.7 bits (194), Expect = 3e-17
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 17/122 (13%)
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP---RQGQALQYDAILECHVEAYPPPA 304
TY + V R +AP + +G + C V AYP
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGN----QVNITCEVFAYPSAT 49
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
I W +DG + ++ + ++ + T + L V FG Y C A N+ G E
Sbjct: 50 ISWFRDGQLLPSSNYSNIKIYNTPS---ASYLEVTPDSENDFGNYNCTAVNRIGQESLEF 106
Query: 365 EL 366
L
Sbjct: 107 IL 108
Score = 65.2 bits (159), Expect = 2e-12
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-- 233
P + V EG V + C +P+ TISW RD S+ S +
Sbjct: 13 RGSHMYAPKLQGPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIY 70
Query: 234 ----GNILKIPNITKTDRGTYYCVAQNGVG 259
+ L++ ++ D G Y C A N +G
Sbjct: 71 NTPSASYLEVTPDSENDFGNYNCTAVNRIG 100
Score = 48.3 bits (115), Expect = 1e-06
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 22/115 (19%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
++ C V A I W + + LP S + S ++ P S L
Sbjct: 34 NQVNITCEVF-AYPSATISWFRDG-----QLLPSS-------NYSNIKIYNTPSASY--L 78
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP-----IISDNSTRSVIVS 196
+ E D G Y C + + S E L+ P + + + V
Sbjct: 79 EVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQVEPYSSTAQVQ 132
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 77.6 bits (191), Expect = 4e-17
Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 19/169 (11%)
Query: 92 LKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
L Y + W+ K +E P +G + +S F+ D + + L I
Sbjct: 19 LTILKHPLASYQRLTWLHTTNQKILEYFP---NGKKTVFESVFKDRVDLDKTNGALRIYN 75
Query: 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF 210
+ + D G Y ++ + ++ + V ++ +I E L C
Sbjct: 76 VSKEDRGDYYMRML--HETEDQWKITMEVYEMV------SKPMIYWECSNATLTCEVLEG 127
Query: 211 PAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
+ + S + R + C A N V
Sbjct: 128 TDVELKLYQGKEHLRSLRQKT-------MSYQWTNLRAPFKCKAVNRVS 169
Score = 61.4 bits (149), Expect = 2e-11
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 43/192 (22%)
Query: 187 DNSTRSVIVSEGQTVYLYCYAN-GFPAPTISWRR---------DNSAALSTGGSIYRGNI 236
D S +V G V L + ++W + + S+++ +
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRV 62
Query: 237 --------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-APVITINRPRQGQAL 287
L+I N++K DRG YY + K + V P+I
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWE-------- 114
Query: 288 QYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
+A L C V + + + + + ++S+ T+
Sbjct: 115 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------A 158
Query: 348 QYACKAANKYGS 359
+ CKA N+
Sbjct: 159 PFKCKAVNRVSQ 170
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 75.2 bits (185), Expect = 6e-17
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
+A+ V + P + + L+ + +E V PPP + W+ +G + ++ V +
Sbjct: 1 VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHV-EY 56
Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
E S+ L G Y A N G+A + I
Sbjct: 57 YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
Score = 57.5 bits (139), Expect = 1e-10
Identities = 22/116 (18%), Positives = 31/116 (26%), Gaps = 15/116 (12%)
Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---------SAAL 225
V L V PP + + G P PT+ W +
Sbjct: 1 VALTVYYPPRV----VSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY 56
Query: 226 STGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
G I G L T + G Y +A+N +G + I P
Sbjct: 57 YQEGEISEGC-LLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVS 110
Score = 37.9 bits (88), Expect = 8e-04
Identities = 8/71 (11%), Positives = 15/71 (21%), Gaps = 9/71 (12%)
Query: 124 GSLIIHDSRFQLTTDPETSTY--ILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELI 178
G + + E L + + G Y N + +
Sbjct: 43 GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA----KNPLGTANQTINGH 98
Query: 179 VRRPPIISDNS 189
+ P D
Sbjct: 99 FLKEPFPVDEV 109
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 80.5 bits (199), Expect = 9e-17
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG----SIYRGNI 236
R I D + V V EG TV C A+G P P I W +S +++
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT 442
Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
L++ D GTY C+A N G
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGG 465
Score = 52.8 bits (127), Expect = 9e-08
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNN---QHYSVSHFATS 328
I + +Q + + C + PPPAI+W+ +++ +V
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV------ 437
Query: 329 DEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
F D +L V + + G Y C AAN G+ L
Sbjct: 438 --FPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Score = 33.9 bits (78), Expect = 0.075
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 23/111 (20%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIH 129
+Q+ D T C AD P ++W+ P L+
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCR---ADGDPPPAILWLS----------P---RKHLVSA 429
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
S +LT P+ L ++ Q D G Y C + + S L VR
Sbjct: 430 KSNGRLTVFPDG---TLEVRYAQVQDNGTYLC-IAANAGGNDSMPAHLHVR 476
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 72.8 bits (179), Expect = 3e-16
Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-ALSTGGSI 231
+ V+ G TV L C P+P I W +D L
Sbjct: 1 GSSGSSGLEEVQLVVEP-EGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV- 58
Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGVG 259
L +P I D+GTY CVA +
Sbjct: 59 -----LILPEIGPQDQGTYSCVATHSSH 81
Score = 53.2 bits (128), Expect = 2e-09
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
+ + P G L C V A P P I W+KDGV +
Sbjct: 10 EVQLVV-EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-------------- 54
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQ 361
L + I + G Y+C A + Q
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQ 84
Score = 47.0 bits (112), Expect = 4e-07
Identities = 27/120 (22%), Positives = 36/120 (30%), Gaps = 28/120 (23%)
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMS 123
S +S + + T L C V A P I WMK PLP+ S
Sbjct: 3 SGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGV-----PLPLPPS 56
Query: 124 GSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI-ISLNNKVSAEVELIVRRP 182
LI+ + I D G Y C S + S V + + P
Sbjct: 57 PVLILPE--------------------IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 74.1 bits (182), Expect = 4e-16
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 9/127 (7%)
Query: 239 IPNITKTDRGTYYCVAQNGVGRG---MKRNIAVEVEFAPVITINRPRQGQALQ-YDAILE 294
+ + + N V ++ + P T + ++ A +
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFD 62
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
C VE YP P ++W KD + ++H+ + + DE + SL + + +Y CKA
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 355 NKYGSAQ 361
N G A
Sbjct: 119 NSLGEAT 125
Score = 64.5 bits (157), Expect = 9e-13
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDNSTRSVIVSEGQTV 201
I + + + + + N+ + E P + + + V EG
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT-KTILDMEVVEGSAA 59
Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGN---ILKIPNITKTDRGTYYCVAQ 255
C G+P P + W +D+ + Y L I + D Y C A
Sbjct: 60 RFDCKVEGYPDPEVMWFKDD-NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118
Query: 256 NGVGR 260
N +G
Sbjct: 119 NSLGE 123
Score = 44.8 bits (106), Expect = 6e-06
Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 22/113 (19%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
A C V+ P V+W K + + FQ+ D E L
Sbjct: 57 SAARFDCKVE-GYPDPEVMWFK--------------DDNPVKESRHFQIDYD-EEGNCSL 100
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPPIISDNSTRSVIVSE 197
+I E+ D Y C+ + N+ + + EL+V + E
Sbjct: 101 TISEVCGDDDAKYTCKAV---NSLGEATCTAELLVETMGKEGEGEGEGEEDEE 150
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 72.1 bits (177), Expect = 4e-16
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
P S++V G + L C +I+W RD + + + G +++ +
Sbjct: 8 QPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEVEVRD 66
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
D G Y CV + G +V V
Sbjct: 67 SIPADSGLYACVTSSPSGSDT-TYFSVNV 94
Score = 54.8 bits (132), Expect = 6e-10
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 268 VEVEFAPVITINRPR-----QGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSV 322
+ + P G LQ L C + +I W++DGVQ++ + +
Sbjct: 3 LPEQAQPWGVPVEVESLLVHPGDLLQ----LRCRLRD-DVQSINWLRDGVQLVESNRTRI 57
Query: 323 SHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ + V G YAC ++ GS +
Sbjct: 58 ---------TGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 35.9 bits (83), Expect = 0.003
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 23/77 (29%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
L+C ++ DD I W++ G ++ +R ++T + +
Sbjct: 25 DLLQLRCRLR--DDVQSINWLRD--------------GVQLVESNRTRITGE------EV 62
Query: 147 SIKEIQETDAGIYKCEV 163
+++ D+G+Y C
Sbjct: 63 EVRDSIPADSGLYACVT 79
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 74.2 bits (182), Expect = 6e-16
Identities = 24/157 (15%), Positives = 42/157 (26%), Gaps = 21/157 (13%)
Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
V W + + F++ + L IK + D+G Y
Sbjct: 30 VRWER----GSTLVAEFKRKMKPFLKSGAFEIL-----ANGDLKIKNLTRDDSGTYNVT- 79
Query: 164 IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223
+ S N L +R ++S + +I E L C + +
Sbjct: 80 VYSTNGTRILNKALDLRILEMVS----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEH 135
Query: 224 ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
S + R + C A N V +
Sbjct: 136 LRSLRQKT-------MSYQWTNLRAPFKCKAVNRVSQ 165
Score = 67.7 bits (165), Expect = 1e-13
Identities = 28/185 (15%), Positives = 56/185 (30%), Gaps = 41/185 (22%)
Query: 193 VIVSEGQTVYLYC--YANGFPAPTISWRRDNSAALSTGGSIYRGNI-----------LKI 239
V + G + L + + W R ++ + LKI
Sbjct: 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKI 65
Query: 240 PNITKTDRGTYYCVAQNGVG-RGMKRNIAVEVE---FAPVITINRPRQGQALQYDAILEC 295
N+T+ D GTY + G R + + + + + P+I +A L C
Sbjct: 66 KNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECS--------NATLTC 117
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
V + + + + + ++S+ T+ + CKA N
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------APFKCKAVN 161
Query: 356 KYGSA 360
+
Sbjct: 162 RVSQE 166
Score = 30.7 bits (69), Expect = 0.55
Identities = 10/85 (11%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 286 ALQYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDE--FSDTSLRVITI 341
AL + L + W + + + + ++ L++ +
Sbjct: 9 ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL 68
Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
R G Y + G+ L
Sbjct: 69 TRDDSGTYNVTVYSTNGTRILNKAL 93
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 76.0 bits (186), Expect = 1e-15
Identities = 44/322 (13%), Positives = 85/322 (26%), Gaps = 62/322 (19%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLII 128
T+S S ++ L +V + P W K D P
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ-------PHE------- 48
Query: 129 HDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDN 188
+T L++ + +AG YK V + ++ +I +
Sbjct: 49 ------------NNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNI 96
Query: 189 S-TRSVIVSEGQTVYLYC---YANGFPAP-----TISWRRDNSAALSTGGSIYRGNILKI 239
+ + VS V L+ ++ G SW + +T + I
Sbjct: 97 TEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ-------DITI 149
Query: 240 PNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ--ALQYDAILECHV 297
T G Y + + ++ A + + + AL + L V
Sbjct: 150 QEFTADKNGVYTVKVWGESEDS-AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208
Query: 298 EA--------YPPPAIVWI----KDGVQIMNNQHYSVSHFATSDEFS-DTSLRVITIERR 344
P I + ++G V + D L +
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268
Query: 345 QFGQYACKAANKYGSAQKEIEL 366
++ C A + +E+
Sbjct: 269 DTAKFWCVAKLYQQIEDETVEV 290
Score = 69.9 bits (170), Expect = 1e-13
Identities = 30/199 (15%), Positives = 51/199 (25%), Gaps = 37/199 (18%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP---TISWRRDNSAALSTGGSIYRGNIL 237
+S S G L G P P T +W +D+ + ++
Sbjct: 2 AFTVSIQSN-KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLT----- 55
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQY--DAILEC 295
+ + T + G+Y Q+ + +E A +I Q + D L
Sbjct: 56 -VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 296 HVEAY---PPPAIV-----WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
V+ P W K I Q ++ F G
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKN----------------G 158
Query: 348 QYACKAANKYGSAQKEIEL 366
Y K + +
Sbjct: 159 VYTVKVWGESEDSAASAST 177
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 70.7 bits (173), Expect = 2e-15
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
TA L C V D+ + W + + D+R +L +S
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPAQQ------TLYFDDKKALRDNRIELVRA-SWHELSIS 74
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ ++ +D G Y C + +++ L V P
Sbjct: 75 VSDVSLSDEGQYTCSL--FTMPVKTSKAYLTVLGVP 108
Score = 56.4 bits (136), Expect = 2e-10
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-------------I 236
T++V V EG T L C + ++ W L +
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 237 LKIPNITKTDRGTYYCVAQ 255
+ + +++ +D G Y C
Sbjct: 73 ISVSDVSLSDEGQYTCSLF 91
Score = 40.6 bits (95), Expect = 9e-05
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 16/78 (20%)
Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSVSHFATSDEFSD 333
+G AIL C V+ ++ W Q + + + + +
Sbjct: 19 VEGG----TAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL--- 71
Query: 334 TSLRVITIERRQFGQYAC 351
S+ V + GQY C
Sbjct: 72 -SISVSDVSLSDEGQYTC 88
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 70.9 bits (174), Expect = 2e-15
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 171 VSAEVELIVRRPPIISDNSTRS-VIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
+ I P I R I G+ + L G P P + W + + ++
Sbjct: 11 QPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV 70
Query: 230 SIYRGN---ILKIPNITKTDRGTYYCVAQNGVG 259
+ + + + ++D G Y Q
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENM 103
Score = 63.6 bits (155), Expect = 9e-13
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 266 IAVEVEFAPVITINRP-------RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
E+ P I + R + G+ L L + P P +VW K G + ++
Sbjct: 14 TIREIAEPPKIRLPRHLRQTYIRKVGEQLN----LVVPFQGKPRPQVVWTKGGAPLDTSR 69
Query: 319 HYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
H TSD DT V R G+Y + I +
Sbjct: 70 V----HVRTSDF--DTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
Score = 42.8 bits (101), Expect = 2e-05
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 27/137 (19%)
Query: 53 GPSIIVALSFLISLASSQRTPTISY---ISQEQIKDIAQTADLKCSVQYADDYP---VIW 106
L+ +++ P I + Q I+ + + +L Q P V+W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ---GKPRPQVVW 58
Query: 107 MKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166
K PL SR + T + +++ +D+G Y+ V I
Sbjct: 59 TKGG-----APLD----------TSRVHVRTSDFDTV--FFVRQAARSDSGEYELSVQIE 101
Query: 167 LNNKVSAEVELIVRRPP 183
K +A + + V
Sbjct: 102 N-MKDTATIRIRVVEKA 117
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 70.8 bits (173), Expect = 4e-15
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 17/88 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-------------- 236
S G +V L+C A G P P I W + ++ G
Sbjct: 29 LSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHA 88
Query: 237 ---LKIPNITKTDRGTYYCVAQNGVGRG 261
+ I + + D GTY C A N R
Sbjct: 89 ASTISIDTLVEEDTGTYECRASNDPDRN 116
Score = 56.6 bits (136), Expect = 4e-10
Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 16/123 (13%)
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIV 306
G+ + + G + P Q L C P P I
Sbjct: 2 GSSHHHHHHSSG------LVPRGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQ 54
Query: 307 WIKDGVQIMNNQHY--------SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
W +G + V AT + + +++ + T+ G Y C+A+N
Sbjct: 55 WWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
Query: 359 SAQ 361
Sbjct: 115 RNH 117
Score = 38.5 bits (89), Expect = 9e-04
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 5/95 (5%)
Query: 69 SQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLI 127
Q + + + +L C P I W + L
Sbjct: 18 GSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARL- 75
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCE 162
D T + + +SI + E D G Y+C
Sbjct: 76 --DRVHIHATYHQHAASTISIDTLVEEDTGTYECR 108
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 69.7 bits (171), Expect = 4e-15
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-----GNILKIPNITKT 245
RS+ V EG++ C +G P PT++W R LST + +I ++ +
Sbjct: 22 RSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVLSTSARHQVTTTKYKSTFEISSVQAS 80
Query: 246 DRGTYYCVAQNGVGR 260
D G Y V +N G+
Sbjct: 81 DEGNYSVVVENSEGK 95
Score = 66.6 bits (163), Expect = 5e-14
Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 262 MKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
+ + + A I +PR + A C + P P + W++ G + + +
Sbjct: 3 HHHHHSSKTTLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARH 61
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
V+ ++ + +++ G Y+ N G + E L
Sbjct: 62 QVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 43.9 bits (104), Expect = 6e-06
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 23/97 (23%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
++A C + P + W++ G ++ +R Q+TT ST
Sbjct: 30 ESARFSCDTD-GEPVPTVTWLR--------------KGQVLSTSARHQVTTTKYKST--F 72
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR 181
I +Q +D G Y V N+ K AE L +++
Sbjct: 73 EISSVQASDEGNYSVVVE---NSEGKQEAEFTLTIQK 106
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 69.3 bits (170), Expect = 5e-15
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY 232
+ + P S + V EGQ L C G P P I+W + + S
Sbjct: 2 SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTC 59
Query: 233 RGNI--LKIPNITKTDRGTYYCVAQNGVGR 260
+ L I + D GTY C+A+N +G+
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQ 89
Score = 59.6 bits (145), Expect = 1e-11
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 267 AVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
+ +E AP + + ++ D +L+C V P P I W+ +G I +
Sbjct: 5 SSGMEVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---- 59
Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
E L + G Y C A N G
Sbjct: 60 ----EAGVAELHIQDALPEDHGTYTCLAENALGQVS 91
Score = 33.4 bits (77), Expect = 0.023
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 26/95 (27%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
Q L+CSV+ P + W+ +G I + E L
Sbjct: 27 QDFVLQCSVR-GTPVPRITWLL--------------NGQPIQYARSTC-----EAGVAEL 66
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIV 179
I++ D G Y C N +VS + V
Sbjct: 67 HIQDALPEDHGTYTCLAE---NALGQVSCSAWVTV 98
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 69.0 bits (169), Expect = 6e-15
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
S +V G + L C +I+W RD + + G +++ + D G Y
Sbjct: 11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLY 69
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAP 274
CV + G +V V A
Sbjct: 70 ACVTSSPSGS-DTTYFSVNVSDAL 92
Score = 57.0 bits (138), Expect = 1e-10
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 282 RQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
G LQ L C + +I W++DGVQ+ + + + + V
Sbjct: 16 HPGDLLQ----LRCRLRD-DVQSINWLRDGVQLAESNRTRI---------TGEEVEVQDS 61
Query: 342 ERRQFGQYACKAANKYGSAQKEIEL 366
G YAC ++ GS +
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSV 86
Score = 38.9 bits (91), Expect = 3e-04
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 24/113 (21%)
Query: 72 TPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHD 130
+ + + + L+C ++ DD I W++ L S
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLR--DDVQSINWLRDG-----VQLAES--------- 46
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+R ++T + + +++ D+G+Y C S + + + V
Sbjct: 47 NRTRITGE------EVEVQDSVPADSGLYACVT-SSPSGSDTTYFSVNVSDAL 92
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 71.9 bits (176), Expect = 6e-15
Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 28/188 (14%)
Query: 88 QTADLKCSVQY----ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPE 140
+ A L C + W K + + MSG + I R
Sbjct: 10 EVATLSCGHNVSVEELAQTRIYWQKEK-----KMVLTMMSGDMNIWPEYKNRTIFDITNN 64
Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVS----AEVELIVRRPPIISDNSTRSVIVS 196
S + I ++ +D G Y+C V+ + AEV L V+ S +
Sbjct: 65 LS---IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADF--PTPSISDFEIP 119
Query: 197 EGQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNIT------KTDRGT 249
+ C GFP P +SW + + ++ + ++ ++ T +
Sbjct: 120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS 179
Query: 250 YYCVAQNG 257
+ C+ + G
Sbjct: 180 FMCLIKYG 187
Score = 67.7 bits (165), Expect = 2e-13
Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 34/198 (17%)
Query: 193 VIVSEGQTVYLYCYANG----FPAPTISWRRDNSAALSTGGS--------------IYRG 234
V + L C N I W+++ L+
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 235 NI-LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEF-------APVITINRPRQGQA 286
N+ + I + +D GTY CV KR EV P I+
Sbjct: 64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
Query: 287 LQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
+ + C +P P + W+++G ++ +VS ++ ++ +S +
Sbjct: 124 RR----IICSTSGGFPEPHLSWLENGEELNAINT-TVSQDPETELYAVSS--KLDFNMTT 176
Query: 346 FGQYACKAANKYGSAQKE 363
+ C + +
Sbjct: 177 NHSFMCLIKYGHLRVNQT 194
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 69.3 bits (170), Expect = 8e-15
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 263 KRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHY 320
+ + E + AP+ +P+ + L+ LEC + A PPP + W ++ + N
Sbjct: 5 HHHHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI 63
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
S+ D +L + + ++ G Y A N+ G L
Sbjct: 64 SLY----QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
Score = 68.6 bits (168), Expect = 1e-14
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG 229
+R P+ +S V EG +V L C + P P + W+R+N
Sbjct: 3 HHHHHHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTD 61
Query: 230 --SIYRGNI----LKIPNITKTDRGTYYCVAQNGVGR 260
S+Y+ N L I ++ K D G Y A N G
Sbjct: 62 RISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV 98
Score = 43.5 bits (103), Expect = 8e-06
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 21/99 (21%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ L+C + A P + W + + ++ ++ T L
Sbjct: 31 DSVKLECQIS-AIPPPKLFWKR--------------NNEMVQFNTDRISLYQDNTGRVTL 75
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
IK++ + DAG Y + N + L V P
Sbjct: 76 LIKDVNKKDAGWYTVSAV---NEAGVTTCNTRLDVTARP 111
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 71.1 bits (173), Expect = 2e-14
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 19/190 (10%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNIL 237
++ P+ + V V+ G + L C ++ WR +++ L S ++L
Sbjct: 3 LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
+ N + + GT CV G GR + + + V P P + D + C
Sbjct: 62 TVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPA--ALVPGDPEVACTA 118
Query: 298 EAYPPPAIVWIK----DGVQIMNNQHYSVSHFATSDE---------FSDTSLRVITIERR 344
P + G Q + +E F T +
Sbjct: 119 HKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGT 178
Query: 345 QFGQ-YACKA 353
C+A
Sbjct: 179 PVPPALYCQA 188
Score = 36.8 bits (84), Expect = 0.005
Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 29/136 (21%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ L C + AD V W +DT L +T +L
Sbjct: 23 ASRQLTCRLACADRGASVQWRGLDT-----SLG----------------AVQSDTGRSVL 61
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
+++ + AG C V+L+V P S + +V + C
Sbjct: 62 TVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSP-AALVPGDPE--VACT 117
Query: 207 ANGFP---APTISWRR 219
A+ +S+
Sbjct: 118 AHKVTPVDPNALSFSL 133
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 71.3 bits (174), Expect = 2e-14
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 25/205 (12%)
Query: 88 QTADLKCSV---QYADDYPVIWMKMDTAKKMEPLPISMSGSLII------HDSRFQLTTD 138
+ ADL C + A+ + W+ + + + G + + R + D
Sbjct: 20 EDADLPCHLFPTMSAETMELKWVSSSL---RQVVNVYADGKEVEDRQSAPYRGRTSILRD 76
Query: 139 P-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSE 197
L I + +D+G Y C + + + ++ + SD V +
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLCYFQ---DGDFYEKALVELKVAALGSDLHV-DVKGYK 132
Query: 198 GQTVYLYCYA-NGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNIT------KTDRGTY 250
++L C + +P P I W + + T + + + + + +
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGV 192
Query: 251 YCVAQNGVGRGMKR-NIAVEVEFAP 274
C ++ + K +I++ F
Sbjct: 193 SCTIRSSLLGLEKTASISIADPFFR 217
Score = 65.9 bits (160), Expect = 1e-12
Identities = 33/223 (14%), Positives = 61/223 (27%), Gaps = 41/223 (18%)
Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSA------ 223
A+++ V P + ++ G+ L C+ + W +
Sbjct: 1 ADLQFSVLGP-------SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVY 53
Query: 224 -----------------ALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
I G L+I N+T +D G Y C Q+G
Sbjct: 54 ADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKAL- 112
Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVE-AYPPPAIVWIKDGVQIMNNQHYSVSH 324
VE++ A + + LEC YP P I W + + +
Sbjct: 113 --VELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV--EAPV 168
Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
A + + + +C + +K +
Sbjct: 169 VADGVGLYAVA-ASVIMRGSSGEGVSCTIRSSLLGLEKTASIS 210
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 67.1 bits (164), Expect = 3e-14
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 180 RRPPIISDNST---RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI 236
+R P ++ R V TV C A G P PT+ W ++ I +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQEHRIGGYKV 60
Query: 237 ------LKIPNITKTDRGTYYCVAQNGVGR 260
L + ++ +D+G Y CV +N G
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGS 90
Score = 59.0 bits (143), Expect = 3e-11
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 291 AILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
C P P + W+K+G + SL + ++ G Y
Sbjct: 26 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV----RNQHWSLIMESVVPSDKGNYT 81
Query: 351 CKAANKYGSAQKEIEL 366
C N+YGS L
Sbjct: 82 CVVENEYGSINHTYHL 97
Score = 37.8 bits (88), Expect = 7e-04
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 32/121 (26%)
Query: 69 SQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPIS 121
++R P + + + + A T +C P + W+K
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG---GNPMPTMRWLK------------- 44
Query: 122 MSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELI 178
+G + R + L ++ + +D G Y C V N+ ++ L
Sbjct: 45 -NGKEFKQEHRIGGYKV-RNQHWSLIMESVVPSDKGNYTCVVE----NEYGSINHTYHLD 98
Query: 179 V 179
V
Sbjct: 99 V 99
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 72.9 bits (179), Expect = 3e-14
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI---- 236
P I D + R + +SEG+ L C P ++ W N LS R ++
Sbjct: 351 SAPFIMD-APRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG 407
Query: 237 -LKIPNITKTDRGTYYCVAQNGVG 259
L ++ +D G Y C+ N G
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG 431
Score = 50.5 bits (121), Expect = 5e-07
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
AP I + PR + A L+C P ++ W+ ++++
Sbjct: 352 APFIM-DAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV----L 404
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+D +L + G Y C N G++ L
Sbjct: 405 NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 41.7 bits (98), Expect = 3e-04
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDS 131
P I ++ + A+LKC + W+ LP +G+++ H S
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCR---TPPMSSVKWL----------LP---NGTVLSHAS 396
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
R + T L+ + +D G+Y C + N +A L V
Sbjct: 397 RHPRISVLNDGT--LNFSHVLLSDTGVYTC---MVTNVAGNSNASAYLNVSTAG 445
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 72.1 bits (177), Expect = 5e-14
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI---- 236
P+I + + V+EG L C A+ ++SW N ++ G R +
Sbjct: 340 YAPVIVE-PPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 237 -LKIPNITKTDRGTYYCVAQNGVGR 260
L N+T D G Y C+ N VG
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGN 422
Score = 48.2 bits (115), Expect = 2e-06
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 7/94 (7%)
Query: 274 PVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFS 332
PVI P + A L+C ++ WI +M + Y V S
Sbjct: 342 PVIV-EPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAV----LS 395
Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
D +L + + G Y C +N G+ L
Sbjct: 396 DGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 42.0 bits (99), Expect = 2e-04
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 23/114 (20%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
P I + A+LKC + V W I+ +G+++ H +
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRA--STSLTSVSW-------------ITPNGTVMTHGA 386
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
T L+ + D G+Y C ++S N+ +A L V
Sbjct: 387 YKVRIAVLSDGT--LNFTNVTVQDTGMYTC--MVS-NSVGNTTASATLNVTGTH 435
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 66.5 bits (163), Expect = 5e-14
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
D I+ V+ P P + W+++ + +Q FA E LR++ ER G
Sbjct: 21 QDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR----RFAEEAEGGLCRLRILAAERGDAGF 76
Query: 349 YACKAANKYGSAQKEIEL 366
Y CKA N+YG+ Q E L
Sbjct: 77 YTCKAVNEYGARQCEARL 94
Score = 65.0 bits (159), Expect = 2e-13
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNI--LKIPNITK 244
V EGQ V + G P P +SW R+ + + G + L+I +
Sbjct: 13 MDQSVREGQDVIMSIRVQGEPKPVVSWLRNR-QPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 245 TDRGTYYCVAQNGVG 259
D G Y C A N G
Sbjct: 72 GDAGFYTCKAVNEYG 86
Score = 39.2 bits (92), Expect = 2e-04
Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 24/97 (24%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
Q + VQ + P V W++ + D R E L
Sbjct: 21 QDVIMSIRVQ-GEPKPVVSWLRN--------------RQPVRPDQRRFAEEA-EGGLCRL 64
Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR 180
I + DAG Y C+ + N+ E L VR
Sbjct: 65 RILAAERGDAGFYTCKAV----NEYGARQCEARLEVR 97
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 66.2 bits (162), Expect = 7e-14
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITK 244
+ V EG+ + C +G P P +SW+ D + + + L I +T
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDG-KPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 245 TDRGTYYCVAQNGVG 259
D G Y C+A N G
Sbjct: 76 RDAGIYTCIATNRAG 90
Score = 62.4 bits (152), Expect = 2e-12
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
++C V P P + W DG + + + + E SL + + R G Y
Sbjct: 26 LCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV----RENGVHSLIIEPVTSRDAGIY 81
Query: 350 ACKAANKYGSAQKEIEL 366
C A N+ G +EL
Sbjct: 82 TCIATNRAGQNSFSLEL 98
Score = 42.0 bits (99), Expect = 3e-05
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 24/115 (20%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
P + + + C V P + W G + DS
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLD--------------GKPVRPDS 54
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPP 183
++ E + L I+ + DAGIY C N+ S +EL+V
Sbjct: 55 AHKMLVR-ENGVHSLIIEPVTSRDAGIYTCIAT----NRAGQNSFSLELVVAAKE 104
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 65.8 bits (161), Expect = 8e-14
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----IL 237
P I S R + + G T L G P PT +W +S A + +
Sbjct: 2 KPKILTAS-RKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 238 KIPNITKTDRGTYYCVAQNGVG 259
P+ + D G Y +N +G
Sbjct: 61 FFPSAKRADSGNYKLKVKNELG 82
Score = 62.3 bits (152), Expect = 1e-12
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
LE P P W V +++ TS+ + +R G Y
Sbjct: 19 THNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSST-----TSIFFPSAKRADSGNY 73
Query: 350 ACKAANKYGSAQKEIEL 366
K N+ G + E+
Sbjct: 74 KLKVKNELGEDEAIFEV 90
Score = 44.2 bits (105), Expect = 3e-06
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 19/109 (17%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDS 131
P I S++ T +L+ P W S
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTV--------------GDSGAALAP 47
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
+ T++ + + D+G YK +V L + A E+IV+
Sbjct: 48 ELLVDAKSSTTS--IFFPSAKRADSGNYKLKVKNEL-GEDEAIFEVIVQ 93
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 65.4 bits (160), Expect = 1e-13
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GN 235
PP I + + EG+ + + C G P P ++W S +
Sbjct: 5 PPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGR 260
L I ++ K D G Y N G
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGS 88
Score = 61.9 bits (151), Expect = 2e-12
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+ C P P + W G +I + + F + T+L ++ ++++ G Y
Sbjct: 22 VLTVACAFTGEPTPEVTWSCGGRKIHSQEQG---RFHIENTDDLTTLIIMDVQKQDGGLY 78
Query: 350 ACKAANKYGSAQKEIEL 366
N++GS + +
Sbjct: 79 TLSLGNEFGSDSATVNI 95
Score = 41.1 bits (97), Expect = 4e-05
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ + C+ + P + W G I + + + L
Sbjct: 21 KVLTVACAFT-GEPTPEVTWSC--------------GGRKIHSQEQGRFHIENTDDLTTL 65
Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR 180
I ++Q+ D G+Y + N+ SA V + +R
Sbjct: 66 IIMDVQKQDGGLYTLSL----GNEFGSDSATVNIHIR 98
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 65.9 bits (161), Expect = 1e-13
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
Query: 261 GMKRNIAVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQH 319
G + + + P PR + + +A L+C V PPP +VW K G Q+ ++
Sbjct: 1 GPMKASSGDQGSPPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASER 59
Query: 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
S + ++ L + G Y C+A N G A +
Sbjct: 60 LSFPA-----DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV 101
Score = 63.6 bits (155), Expect = 8e-13
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
R V V G L C G P P + W + L+ + G L + T
Sbjct: 21 RPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQ-QLAASERLSFPADGAEHGLLLTAALPT 79
Query: 246 DRGTYYCVAQNGVG 259
D G Y C A+N G
Sbjct: 80 DAGVYVCRARNAAG 93
Score = 49.3 bits (118), Expect = 6e-08
Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 23/99 (23%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
A+LKC V + P V+W K G + R D L
Sbjct: 29 AEAELKCVVL-GEPPPVVVWEK--------------GGQQLAASERLSFPADGAEHG--L 71
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
+ TDAG+Y C N + A + V PP
Sbjct: 72 LLTAALPTDAGVYVCRAR---NAAGEAYAAAAVTVLEPP 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 70.3 bits (172), Expect = 2e-13
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 4/87 (4%)
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDN---SAALSTGGSIYRGNILKIPNIT 243
+ + G T+ + C + N + S G R L +
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309
Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEV 270
D G Y C A ++ ++V
Sbjct: 310 VEDGGVYTCYAMGETFN-ETLSVELKV 335
Score = 48.7 bits (116), Expect = 2e-06
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 13/106 (12%)
Query: 264 RNIAVEVEFA---PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHY 320
NI F + G L + C + + Q+++
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTL----TIRCDTKQQGMTKVWVSPSNEQVLSQGSN 293
Query: 321 SVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
L ++ G Y C A + + +EL
Sbjct: 294 GSVSVRNG------DLFFKKVQVEDGGVYTCYAMGETFNETLSVEL 333
Score = 41.4 bits (97), Expect = 3e-04
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
T ++C + +W+ + L +GS+ + + L
Sbjct: 262 DTLTIRCDTK-QQGMTKVWVSPS---NEQVLSQGSNGSVSVRNG-------------DLF 304
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNST 190
K++Q D G+Y C + + VEL V + + T
Sbjct: 305 FKKVQVEDGGVYTC-YAMGETFNETLSVELKVYNFTLHGHHDT 346
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 64.2 bits (157), Expect = 3e-13
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
+ VS A G P PT W +D A++ GG L+I +
Sbjct: 14 QDTTVSSDSVAKFAVKATGEPRPTAIWTKDG-KAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 246 DRGTYYCVAQNGVG 259
D G Y C +N G
Sbjct: 73 DSGLYTCTVKNSAG 86
Score = 63.5 bits (155), Expect = 6e-13
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
A P P +W KDG I Y +S + L + + G
Sbjct: 22 SVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSGL 76
Query: 349 YACKAANKYGSAQKEIEL 366
Y C N GS +L
Sbjct: 77 YTCTVKNSAGSVSSSCKL 94
Score = 42.3 bits (100), Expect = 2e-05
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 25/97 (25%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
A + P W K G I +++L+ D L
Sbjct: 22 SVAKFAVKAT-GEPRPTAIWTK--------------DGKAITQGGKYKLSEDKGGFF--L 64
Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVR 180
I + +D+G+Y C V N VS+ +L ++
Sbjct: 65 EIHKTDTSDSGLYTCTVK----NSAGSVSSSCKLTIK 97
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 64.3 bits (157), Expect = 4e-13
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 273 APVITINRPRQGQALQ--YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDE 330
P I + + Q ++ L V P W+K QI ++H V +
Sbjct: 7 GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENG-- 62
Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ L ++ + G Y NK GS Q ++ L
Sbjct: 63 ---SKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
Score = 61.2 bits (149), Expect = 5e-12
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY-----RGNI 236
P I V G++V L+ G T +W + + + G+
Sbjct: 7 GPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFR-KQIQESEHMKVENSENGSK 64
Query: 237 LKIPNITKTDRGTYYCVAQNGVG 259
L I + G Y + +N +G
Sbjct: 65 LTILAARQEHCGCYTLLVENKLG 87
Score = 50.0 bits (120), Expect = 5e-08
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 19/118 (16%)
Query: 67 ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS 125
+S P I ++Q ++ +L V WMK
Sbjct: 2 SSGSSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMK--------------FRK 46
Query: 126 LIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I ++ S L+I ++ G Y V L A+V L V P
Sbjct: 47 QIQESEHMKVENSENGSK--LTILAARQEHCGCYTLLVENKL-GSRQAQVNLTVVDKP 101
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 63.5 bits (155), Expect = 6e-13
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGG--SIYRGNI----LKIPNITK 244
+ + EG V C G P P I W +D +I R L T
Sbjct: 16 KHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTL 75
Query: 245 TDRGTYYCVAQNGVGR 260
D G Y +A N GR
Sbjct: 76 DDDGNYTIMAANPQGR 91
Score = 58.9 bits (143), Expect = 3e-11
Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 273 APVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQI-MNNQHYSVSHFATSDE 330
AP + + + + + C V P P I W KDG QI + HY++ D
Sbjct: 8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQ----RDL 62
Query: 331 FSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
SL G Y AAN G
Sbjct: 63 DGTCSLHTTASTLDDDGNYTIMAANPQGRIS 93
Score = 40.8 bits (96), Expect = 8e-05
Identities = 17/99 (17%), Positives = 23/99 (23%), Gaps = 21/99 (21%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
C V + P + W K G I S T L
Sbjct: 24 MPVTFTCRVA-GNPKPKIYWFK--------------DGKQISPKSDHYTIQRDLDGTCSL 68
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
D G Y N ++S L+V+
Sbjct: 69 HTTASTLDDDGNYTIMAA---NPQGRISCTGRLMVQAVN 104
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 63.5 bits (155), Expect = 6e-13
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
++ V P P + W +G + ++ + + E SL + G
Sbjct: 21 RFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKM----IVSEKGLHSLIFEVVRASDAGA 76
Query: 349 YACKAANKYGSAQKEIEL 366
YAC A N+ G A ++L
Sbjct: 77 YACVAKNRAGEATFTVQL 94
Score = 63.5 bits (155), Expect = 7e-13
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR------GNILKIPNITK 244
++ + EG+ + +G PAP +SW + + + + L +
Sbjct: 13 ENMSIDEGRFCRMDFKVSGLPAPDVSWYLNG-RTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 245 TDRGTYYCVAQNGVG 259
+D G Y CVA+N G
Sbjct: 72 SDAGAYACVAKNRAG 86
Score = 38.1 bits (89), Expect = 6e-04
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 24/96 (25%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ + V P V W G + D ++ E + L
Sbjct: 21 RFCRMDFKVS-GLPAPDVSWYLN--------------GRTVQSDDLHKMIVS-EKGLHSL 64
Query: 147 SIKEIQETDAGIYKCEVIISLNNK---VSAEVELIV 179
+ ++ +DAG Y C N+ + V+L V
Sbjct: 65 IFEVVRASDAGAYACVAK----NRAGEATFTVQLDV 96
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 64.0 bits (155), Expect = 8e-13
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 15/105 (14%)
Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------------- 233
+ + + +S G+ + L C A I + + ++ +
Sbjct: 13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 234 GNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITI 278
+ L I +T++D+G Y C A +G+ K + V V P +
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAF 116
Score = 46.3 bits (109), Expect = 1e-06
Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L C+ + + + + P L+ D + Q ++ + L+
Sbjct: 24 EKLVLNCTARTELNVGIDFNWEY------PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
I + +D G+Y C S + V P ++
Sbjct: 78 IDGVTRSDQGLYTCAA-SSGLMTKKNSTFVRVHEKPFVA 115
Score = 44.7 bits (105), Expect = 4e-06
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 6/97 (6%)
Query: 276 ITINRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFS 332
+ ++ + + +L C I W + + + + S
Sbjct: 10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69
Query: 333 DTSLRVITIERRQF---GQYACKAANKYGSAQKEIEL 366
L +TI+ G Y C A++ + + +
Sbjct: 70 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 63.1 bits (154), Expect = 8e-13
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 289 YDAILECHVEAYPPPA-IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG 347
C +E Y + W Q+ N++ Y +++ E L V I + G
Sbjct: 17 GHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY-----EDGVAILYVKDITKLDDG 71
Query: 348 QYACKAANKYGSAQKEIELF 367
Y CK N YG ELF
Sbjct: 72 TYRCKVVNDYGEDSSYAELF 91
Score = 56.2 bits (136), Expect = 2e-10
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAALSTGGSI---YRGNI--LKIPNITK 244
+ EG V C + T ++W L Y + L + +ITK
Sbjct: 9 MHAVGEEGGHVKYVCKIENYDQSTQVTWYFGV-RQLENSEKYEITYEDGVAILYVKDITK 67
Query: 245 TDRGTYYCVAQNGVGR 260
D GTY C N G
Sbjct: 68 LDDGTYRCKVVNDYGE 83
Score = 44.2 bits (105), Expect = 4e-06
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 26/110 (23%)
Query: 81 EQIKDIA----QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQL 135
QI C ++ D V W + + ++++
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF--------------GVRQLENSEKYEI 51
Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRRPP 183
T + + L +K+I + D G Y+C+V+ N+ + S+ EL V+
Sbjct: 52 TYEDGVAI--LYVKDITKLDDGTYRCKVV---NDYGEDSSYAELFVKGVR 96
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 67.2 bits (163), Expect = 9e-13
Identities = 29/242 (11%), Positives = 62/242 (25%), Gaps = 18/242 (7%)
Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
P + + + + + C + + +A+ L V P + +
Sbjct: 43 LLPGNNRKVYELSNV--QEDSQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99
Query: 197 EGQTVYLYCYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY-C 252
G+ + L C G P T+ R + + + G + C
Sbjct: 100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC 159
Query: 253 VAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILE--------CHVEAYPPPA 304
+ + + T P L +LE C ++ P +
Sbjct: 160 RTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVS 219
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
+ + +D FS + +T E + C S +
Sbjct: 220 EAQVHLALGDQRLNPTVTYG---NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 276
Query: 365 EL 366
+
Sbjct: 277 TV 278
Score = 60.3 bits (145), Expect = 2e-10
Identities = 21/162 (12%), Positives = 44/162 (27%), Gaps = 16/162 (9%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK-------VSAEVELIVRRPP 183
R +P T + ++ ++ + C + L + SA +L P
Sbjct: 131 KREPAVGEPAEVTTTVLVR--RDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188
Query: 184 IISDNSTRSVIVSEGQTVYLYCYANG-FPAPTISWRRDNSAALSTGGSIYRGNILKIP-- 240
++ + C +G FP Y +
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 248
Query: 241 -NITKTDRGTYYCVAQNGVGRG---MKRNIAVEVEFAPVITI 278
++T D GT +G + + + AP + +
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL 290
Score = 57.9 bits (139), Expect = 9e-10
Identities = 23/179 (12%), Positives = 52/179 (29%), Gaps = 18/179 (10%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITK-TDRGT 249
VI+ G +V + C + + L + GN K+ ++ +
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPKLLGIET----PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 250 YYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA---IV 306
C + G+ + + + Q + + L C VE P A +V
Sbjct: 63 PMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVV 122
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGSAQKEI 364
++ ++ + + + R G ++C+ E+
Sbjct: 123 LLRGEKEL---------KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 63.1 bits (154), Expect = 9e-13
Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 268 VEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
++ AP IT+ R R + + +V++ P + W +GV++ + ++
Sbjct: 3 FTLDHAPRITL-RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN-- 59
Query: 327 TSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+L ++ G Y N G A L
Sbjct: 60 ---TSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL 96
Score = 61.2 bits (149), Expect = 4e-12
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
RS V GQ P + W + L I + L+I +
Sbjct: 16 RSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV-ELQESSKIHYTNTSGVLTLEILDCHTD 74
Query: 246 DRGTYYCVAQNGVG 259
D GTY V N G
Sbjct: 75 DSGTYRAVCTNYKG 88
Score = 41.5 bits (98), Expect = 4e-05
Identities = 18/96 (18%), Positives = 27/96 (28%), Gaps = 23/96 (23%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
Q +VQ + V W +G + S+ T T L
Sbjct: 24 QNTRFILNVQ-SKPTAEVKWYH--------------NGVELQESSKIHYTNTSGVLT--L 66
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
I + D+G Y+ N + S L V
Sbjct: 67 EILDCHTDDSGTYRAVCT---NYKGEASDYATLDVT 99
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 63.5 bits (154), Expect = 1e-12
Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
+++ ++ + QT LKC + + W+ I ++ ++ +S+
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSG------FTIFLNEYPVLKNSK 55
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+QL + +++ + D G+YKC + ++ + EV++IV
Sbjct: 56 YQLLHH-SANQLSITVPNVTLQDEGVYKC--LHYSDSVSTKEVKVIVLATM 103
Score = 62.7 bits (152), Expect = 2e-12
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 188 NSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN------------ 235
N T ++ V EGQT+ L C + ++ W + + N
Sbjct: 6 NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQ 65
Query: 236 -ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRP 281
+ +PN+T D G Y C+ + + + V V R
Sbjct: 66 LSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATMKGEFCRY 110
Score = 38.8 bits (90), Expect = 5e-04
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 290 DAILECHVEAYPPPAIVWIK--------DGVQIMNNQHYSVSHFATSDEFSDTSLRVITI 341
L+C ++ W+ + ++ N Y + H + S+ V +
Sbjct: 18 TLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNV 73
Query: 342 ERRQFGQYACKAAN 355
+ G Y C +
Sbjct: 74 TLQDEGVYKCLHYS 87
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 66.1 bits (161), Expect = 2e-12
Identities = 53/291 (18%), Positives = 93/291 (31%), Gaps = 26/291 (8%)
Query: 88 QTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
++A L C+V P+ W + A L + + +T E + +
Sbjct: 19 ESAILHCTVTSLIPVGPIQWFR--GAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSI 76
Query: 147 SIKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVY 202
SI I DAG Y C + A EL VR P S + + TV
Sbjct: 77 SISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVS 136
Query: 203 LYCYANGF-PAP-TISWRRDNSAALSTG---------GSIYRGN-ILKIPNITKTDRGTY 250
C ++GF P T+ W + N LS Y + K+ +
Sbjct: 137 FTCESHGFSPRDITLKWFK-NGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQV 195
Query: 251 YCVAQN--GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAI--V 306
C + G ++ + T+ +Q + + C V + P +
Sbjct: 196 ICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLT 255
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKAANK 356
W+++G +V+ ++ S L V R + C+ +
Sbjct: 256 WLENGNVSRTETASTVTE-NKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHD 305
Score = 57.3 bits (138), Expect = 2e-09
Identities = 42/221 (19%), Positives = 68/221 (30%), Gaps = 30/221 (13%)
Query: 189 STRSVIVSEGQTVYLYCYANGF-PAPTISWRRDNSAALSTGGSIYRGNI----------- 236
+SV V+ G++ L+C P I W R A + G+
Sbjct: 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK 68
Query: 237 -------LKIPNITKTDRGTYYCVAQNG------VGRGMKRNIAVEVEFAPVITINRPRQ 283
+ I NIT D GTYYCV G ++V + + + P
Sbjct: 69 RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG-PAA 127
Query: 284 GQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVIT 340
Q+ C + P I W K+G ++ + Q +V S +S S +V+
Sbjct: 128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT-NVDPVGESVSYSIHSTAKVVL 186
Query: 341 IERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPIF 381
Q C+ A+ +
Sbjct: 187 TREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEV 227
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 61.1 bits (149), Expect = 4e-12
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIY----RGNI--LKIPNITK 244
+S V +G + G P P W ++ + IY N+ L I ++T
Sbjct: 13 QSQTVGQGSDAHFRVRVVGKPDPECEWYKNG-VKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 245 TDRGTYYCVAQNGVG 259
D + A N G
Sbjct: 72 EDSASIMVKAINIAG 86
Score = 60.7 bits (148), Expect = 5e-12
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 289 YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
DA V P P W K+GV+I + E + L + +
Sbjct: 21 SDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWY----WPEDNVCELVIRDVTGEDSAS 76
Query: 349 YACKAANKYGSA 360
KA N G
Sbjct: 77 IMVKAINIAGET 88
Score = 41.1 bits (97), Expect = 5e-05
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 22/96 (22%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
A + V P W K +G I R E + L
Sbjct: 21 SDAHFRVRVV-GKPDPECEWYK--------------NGVKIERSDRIYWYWP-EDNVCEL 64
Query: 147 SIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVR 180
I+++ D+ + I N + S+ L+V+
Sbjct: 65 VIRDVTGEDSASIMVKAI---NIAGETSSHAFLLVQ 97
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 63.0 bits (153), Expect = 4e-12
Identities = 24/157 (15%), Positives = 44/157 (28%), Gaps = 22/157 (14%)
Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
V+W K + S S F+ +T + L+I + +D Y+ E
Sbjct: 26 VLWKKQKD------KVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79
Query: 164 IISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA 223
N + + L V ++ +I E L C + +
Sbjct: 80 P---NITDTMKFFLYVLEMV------SKPMIYWECSNATLTCEVLEGTDVELKLYQGKE- 129
Query: 224 ALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGR 260
+ + R + C A N V +
Sbjct: 130 ------HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160
Score = 52.6 bits (126), Expect = 1e-08
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 41/186 (22%)
Query: 190 TRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI------YRGNI------- 236
++ + V + + P + W++ S ++ +
Sbjct: 2 SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60
Query: 237 -LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAV-EVEFAPVITINRPRQGQALQYDAILE 294
L I N+T +D Y + N MK + V E+ P+I +A L
Sbjct: 61 SLTIYNLTSSDEDEYEMESPNITDT-MKFFLYVLEMVSKPMIYWE--------CSNATLT 111
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAA 354
C V + + + + + ++S+ T+ + CKA
Sbjct: 112 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR----------------APFKCKAV 155
Query: 355 NKYGSA 360
N+
Sbjct: 156 NRVSQE 161
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 61.9 bits (150), Expect = 5e-12
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 272 FAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEF 331
P + + + I V+ P P++ W+ +G + +
Sbjct: 2 HMPASV--QLHTAVEMHHWCI-PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 332 S--DTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+ LR+ G Y AAN +G A I
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
Score = 47.2 bits (112), Expect = 6e-07
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 14/84 (16%)
Query: 191 RSVIVSEGQTVYLYC---YANGFPAPTISWRRDN-----------SAALSTGGSIYRGNI 236
SV + ++ +C +G PAP++ W + R
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 237 LKIPNITKTDRGTYYCVAQNGVGR 260
L++ T + G Y +A N G+
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQ 88
Score = 33.8 bits (77), Expect = 0.026
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 7/63 (11%)
Query: 128 IHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPI 184
I + + L + + + G Y N SA + P
Sbjct: 47 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLA----ANPFGQASASIMAAFMDNPF 102
Query: 185 ISD 187
+
Sbjct: 103 EFN 105
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 61.8 bits (150), Expect = 3e-11
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDNSTRSVIVSEGQTV 201
I + AG Y+C+ I + S +EL+V P +S + R +++ G+ +
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLS--ADRGLVLMPGENI 123
Query: 202 YLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
L C + P S ++ +L S + + G Y C
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176
Score = 49.5 bits (118), Expect = 3e-07
Identities = 29/186 (15%), Positives = 47/186 (25%), Gaps = 18/186 (9%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN----I 236
P IS S S ++ +V + C A T NS G + N
Sbjct: 8 PMPFISAKS--SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65
Query: 237 LKIPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAIL 293
I ++ G Y C + G R + + V + + L
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISL 125
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
C P K+G +S + + ++ G Y C
Sbjct: 126 TCSSAHIPFDRFSLAKEG---------ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG 176
Query: 354 ANKYGS 359
Sbjct: 177 WYNRSP 182
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 62.8 bits (152), Expect = 3e-11
Identities = 40/314 (12%), Positives = 85/314 (27%), Gaps = 37/314 (11%)
Query: 67 ASSQRTPTIS--YISQEQIKDIAQTADLKCSVQ--YADDYPVIWMKMDTAKKMEPLPISM 122
+ PT+ S + T L C V + W++ ++ S
Sbjct: 2 SRDFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST 61
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI--ISLNNKVSAEVELIVR 180
+ ++ L++ + Y C+V + +
Sbjct: 62 TQE----GELA-------STQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNP 110
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDNSAALSTG-------- 228
R + + ++ + C ++W R + ++
Sbjct: 111 RGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQR 170
Query: 229 GSIYRGN-ILKIPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQG 284
L + + TY C + AP + +
Sbjct: 171 NGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEW 230
Query: 285 QALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDE-FSDTS-LRVIT 340
+ L C ++ + P I W+ + VQ+ + +H + T F S L V
Sbjct: 231 PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTR 290
Query: 341 IERRQFGQYACKAA 354
E Q ++ C+A
Sbjct: 291 AEWEQKDEFICRAV 304
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 63.3 bits (153), Expect = 5e-11
Identities = 23/171 (13%), Positives = 44/171 (25%), Gaps = 14/171 (8%)
Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQ 255
S + +Y N P W + L I + V
Sbjct: 89 SPPGLLNVYVKVNNGPLGNPIWNIS-----GDPTRTWNRAELAISTFWPNFYQVIFEVIT 143
Query: 256 NGVGRGMKRNIAVEVEFAPVITINRPRQGQALQ----YDAILECHVEAYPPPAIVWIKDG 311
+G +G V+V P + Q ++ A +C G
Sbjct: 144 SG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQG 202
Query: 312 VQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKAANKYGSAQ 361
++ + + + + V+ +R G+Y C + G
Sbjct: 203 ---IDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI 250
Score = 55.2 bits (132), Expect = 2e-08
Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 18/163 (11%)
Query: 121 SMSGSLIIHDSRFQLTTDP-ETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
++SG +R +L + Y + + I G + + L +
Sbjct: 111 NISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHP--------- 161
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---- 235
++V V+ GQ C A G +
Sbjct: 162 -CTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRR 220
Query: 236 ---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
+ N TK D G Y C+ + G G+ + V+ PV
Sbjct: 221 FIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263
Score = 41.3 bits (96), Expect = 5e-04
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 19/115 (16%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
Q A +CS + PL T +
Sbjct: 180 QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-------------VTSSRRFIASFN 226
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI------ISDNSTRSVIVS 196
+ + DAG Y+C + +S EL+V+ PP+ ++ + +
Sbjct: 227 VVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQ 281
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 58.5 bits (141), Expect = 8e-11
Identities = 11/86 (12%), Positives = 20/86 (23%), Gaps = 16/86 (18%)
Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTGGSIY-------------RG 234
+ V G+ + PTI W + L++ +
Sbjct: 15 QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 74
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGR 260
++I G Y C
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVTYKDKF 100
Score = 45.0 bits (106), Expect = 3e-06
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 278 INRPRQGQALQ-YDAILECHVEAYP---PPAIVWIKDGVQIMNN---QHYSVSH-FATSD 329
I +P+ G D V+A P I W K + + +H + F
Sbjct: 11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHS 70
Query: 330 EFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+++I + G Y C+ K +L
Sbjct: 71 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
Score = 43.4 bits (102), Expect = 1e-05
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 19/108 (17%)
Query: 88 QTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST 143
+ V+ A+D + W K K L L + ++ T
Sbjct: 23 EDITFIAKVK-AEDLLRKPTIKWFK----GKWMDLASKAGKHLQLKETF---ERHSRVYT 74
Query: 144 YILSIKEIQETDAGIYKCEVIISLNNK---VSAEVELIVRRPPIISDN 188
+ + I + ++ AG Y+CEV K S +L V + N
Sbjct: 75 FEMQIIKAKDNFAGNYRCEVT----YKDKFDSCSFDLEVHESTGTTPN 118
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 58.6 bits (141), Expect = 9e-11
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
T LKC V+ +D + W + + D+R QL T +S
Sbjct: 54 GTVVLKCQVKDHEDSSLQWSNPAQQ------TLYFGEKRALRDNRIQLVTSTPH-ELSIS 106
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I + D G Y C + +A+ + V P
Sbjct: 107 ISNVALADEGEYTCSI--FTMPVRTAKSLVTVLGIP 140
Score = 52.5 bits (125), Expect = 1e-08
Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 14/105 (13%)
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---------- 235
S T V G TV L C ++ W L G +
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 236 ---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE-FAPVI 276
+ I N+ D G Y C R K + V P+I
Sbjct: 101 HELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQKPII 145
Score = 32.5 bits (73), Expect = 0.091
Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 16/89 (17%)
Query: 271 EFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIM--------NNQHYSV 322
+ P + G +L+C V+ + ++ W Q + + +
Sbjct: 40 DSQPWTSDETVVAGG----TVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQL 95
Query: 323 SHFATSDEFSDTSLRVITIERRQFGQYAC 351
T E S+ + + G+Y C
Sbjct: 96 VTS-TPHEL---SISISNVALADEGEYTC 120
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 60.5 bits (146), Expect = 1e-10
Identities = 32/221 (14%), Positives = 63/221 (28%), Gaps = 48/221 (21%)
Query: 173 AEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAP-----TISWRR-------- 219
A++++ + + I V ++C I+W
Sbjct: 1 ADLKVEMMAGG--------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE 52
Query: 220 -------------DNSAALSTGGSIYRGN-ILKIPNITKTDRGTYYCVAQNGVGRGMKRN 265
A+ + + G+ L++P I + G Y C +
Sbjct: 53 VKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGT- 111
Query: 266 IAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVS 323
+ +EV +P + Q + + C + P AI W K Q +
Sbjct: 112 VQLEVVASPASRLL-LDQVGMKENEDKYMCESSGFYPEAINITWEKQT-QKFPHPIEISE 169
Query: 324 HFATSDE-------FSDTS-LRVITIERRQFGQYACKAANK 356
T F+ TS L++ + + Y C +
Sbjct: 170 DVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210
Score = 50.4 bits (120), Expect = 2e-07
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 14/145 (9%)
Query: 88 QTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
+ C++ Y+ + W E G R P
Sbjct: 19 DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQE-AFRPGAIVSPWRL 77
Query: 143 T---YILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQ 199
L + IQ +AG Y+CEV+++ K V+L V P + +
Sbjct: 78 KSGDASLRLPGIQLEEAGEYRCEVVVT-PLKAQGTVQLEVVASPASRLLLDQVGMKENED 136
Query: 200 TVYLYCYANGF--PAPTISWRRDNS 222
C ++GF A I+W +
Sbjct: 137 K--YMCESSGFYPEAINITWEKQTQ 159
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.9 bits (137), Expect = 2e-10
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 88 QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
QT ++C + W K +A L S + SRF + DP+ +
Sbjct: 26 QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 85
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVEL 177
+++ +++E D+G Y C + +N VS V
Sbjct: 86 VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRF 117
Score = 32.6 bits (74), Expect = 0.070
Identities = 10/108 (9%), Positives = 32/108 (29%), Gaps = 22/108 (20%)
Query: 186 SDNSTRSVIVSEGQTVYLYCYANG--FPAPTISWRR-------------DNSAALSTGG- 229
+ + + + GQT+ + C W + ++
Sbjct: 13 AQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSR 72
Query: 230 -SIYRGN-----ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
+I+ + + ++ + D G Y+C + +++ +
Sbjct: 73 FTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 58.5 bits (141), Expect = 3e-10
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 13/176 (7%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG 248
R V G +++L C N + G R ++ +I + +
Sbjct: 8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIREPE-T 64
Query: 249 TYYCVAQNGVGRGMKRNIAVEVEFAP-VITINRPRQGQALQYDAILECHVEAYPPPA--- 304
C + R ++ + P + + Q + + L C V P A
Sbjct: 65 QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLT 123
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFG-QYACKAANKYGS 359
+ ++ +++ + R G ++C+A
Sbjct: 124 LTLLRGAQELIRRSFAGE----PPRARGAVLTATVLARREDHGANFSCRAELDLRP 175
Score = 42.4 bits (99), Expect = 6e-05
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 12/113 (10%)
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
+ +I+E C + A + + P + G+ L
Sbjct: 53 ARQLVDIRE-PETQPVCFFR-CARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLS 110
Query: 205 CYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
C P T++ R + R + P + T +A
Sbjct: 111 CRVPGAGPRASLTLTLLRGAQ-------ELIRRSFAGEPPRARGAVLTATVLA 156
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 56.1 bits (135), Expect = 4e-10
Identities = 15/107 (14%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
Query: 88 QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
+ ++C + Y W + + + L + + R + + + T+
Sbjct: 18 GSLTVQCVYRSGWET-YLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFT 76
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
++++++ +TDA Y C + + N + V++ + P+ + ++ S
Sbjct: 77 VTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEETSSS 122
Score = 37.6 bits (87), Expect = 0.001
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 24/111 (21%)
Query: 191 RSVIVSEGQTVYLYC-YANGFPAPTISWRR-------------DNSAALSTGG--SIYRG 234
+V E ++ + C Y +G+ W R S SI +
Sbjct: 10 TTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSI-KD 68
Query: 235 NI------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITIN 279
N + + ++ KTD TY+C + G + + V ++ APV
Sbjct: 69 NQKNRTFTVTMEDLMKTDADTYWCGIEKT-GNDLGVTVQVTIDPAPVTQEE 118
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 56.3 bits (135), Expect = 5e-10
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 38/126 (30%)
Query: 182 PPII----SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-- 235
PP I +++V G + L +G PAPT+ W++ +
Sbjct: 13 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 72
Query: 236 -------------------------------ILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
I + K D G Y +N VG +
Sbjct: 73 DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 131
Query: 265 NIAVEV 270
N+ V+V
Sbjct: 132 NLTVKV 137
Score = 50.9 bits (121), Expect = 4e-08
Identities = 17/132 (12%), Positives = 30/132 (22%), Gaps = 29/132 (21%)
Query: 264 RNIAVEVEFAPVITINRPRQGQALQY-----DAILECHVEAYPPPAIVWIKDGVQIMNNQ 318
+ + P I ++ P + L+ + P P ++W K Q
Sbjct: 4 HHHHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP 63
Query: 319 HYSVSHFATSDEFS------------------------DTSLRVITIERRQFGQYACKAA 354
S + V E+ G Y
Sbjct: 64 ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVK 123
Query: 355 NKYGSAQKEIEL 366
N G Q + +
Sbjct: 124 NPVGEDQVNLTV 135
Score = 38.2 bits (88), Expect = 9e-04
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 26/111 (23%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGS---------------LIIHDS 131
L + D P + W K T P + L +
Sbjct: 34 NKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 92
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIV 179
R ++ T + S +++ ++ D G+Y V N V + + V
Sbjct: 93 RVRVETTKDRSI--FTVEGAEKEDEGVYTVTV----KNPVGEDQVNLTVKV 137
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 55.4 bits (133), Expect = 5e-10
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 16/85 (18%)
Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALSTG-------------GSIYRG 234
+ V+ G ++ G P + W + LS+ S
Sbjct: 12 QDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYL 71
Query: 235 NILKIPNITKTDRGTYYCVAQNGVG 259
L I + G+Y C
Sbjct: 72 FELHITDAQPAFTGSYRCEVSTKDK 96
Score = 47.3 bits (112), Expect = 4e-07
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 290 DAILECHVEAYP---PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDT----SLRVITIE 342
V PP + W K ++++ S + + L + +
Sbjct: 21 SITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80
Query: 343 RRQFGQYACKAANKYGSAQKEIEL 366
G Y C+ + K L
Sbjct: 81 PAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 43.4 bits (102), Expect = 8e-06
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+ V A V W K K L + L +HDS + +
Sbjct: 20 GSITFSARVAGASLLKPPVVKWFK----GKWVDLSSKVGQHLQLHDS---YDRASKVYLF 72
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
L I + Q G Y+CEV + + + L V
Sbjct: 73 ELHITDAQPAFTGSYRCEV-STKDKFDCSNFNLTV 106
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 54.7 bits (132), Expect = 1e-09
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI 231
+ + RR II D V V EG + C + + W D + L
Sbjct: 4 GSSGLVQGRRVHIIED--LEDVDVQEGSSATFRCRISPANYEPVHWFLDKT-PLHANELN 60
Query: 232 Y------RGNILKIPNITKTDRGTYYCVA 254
++L + + D GT Y A
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA 89
Score = 51.2 bits (123), Expect = 2e-08
Identities = 10/72 (13%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A C + + W D + N+ + + L + + + G
Sbjct: 30 SATFRCRISPANYEPVHWFLDKTPLHANELNEI----DAQPGGYHVLTLRQLALKDSGTI 85
Query: 350 ACKAANKYGSAQ 361
+A ++ SA
Sbjct: 86 YFEAGDQRASAA 97
Score = 49.7 bits (119), Expect = 6e-08
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 20/98 (20%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+A +C + A+ PV W + + + ++ ++L+
Sbjct: 29 SSATFRCRISPANYEPVHWFL--------------DKTPLHANELNEIDAQ-PGGYHVLT 73
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPII 185
++++ D+G E A L V P +
Sbjct: 74 LRQLALKDSGTIYFEA-----GDQRASAALRVTEKPSV 106
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 56.4 bits (136), Expect = 1e-09
Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVRR---PPIISDN 188
+L++ +L I ++ + AG Y+C S ++EL+ P +S
Sbjct: 41 EKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLS-- 98
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRG 248
+ VS G V L C + + ++ A + I +T G
Sbjct: 99 AQPGPAVSSGGDVTLQCQ-TRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSG 157
Query: 249 TYYC 252
TY C
Sbjct: 158 TYRC 161
Score = 42.9 bits (101), Expect = 5e-05
Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 22/181 (12%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPN 241
P + S +V + V L C + +S+ L IP
Sbjct: 8 KPSLQALP--SSLVPLEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV------LFIPA 58
Query: 242 ITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILECHVE 298
+ ++ G Y C QNG + + + FA +P + D L+C
Sbjct: 59 MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTR 118
Query: 299 AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYG 358
Y K+G + + +T G Y C + +
Sbjct: 119 -YGFDQFALYKEGDPAPYKNPERWYR-------ASFPIITVTAAHS--GTYRCYSFSSRD 168
Query: 359 S 359
Sbjct: 169 P 169
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 54.7 bits (131), Expect = 1e-09
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSA------------ALSTG 228
P I+ + G V C A T +W DN A G
Sbjct: 11 PQITVQPE-TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
+ IL++ N+ T G Y CV N G + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 45.1 bits (106), Expect = 2e-06
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEF 331
P IT+ Q D C + + W D + + + + +H
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 332 SDTSLRVITIERRQF---GQYACKAANKYGSAQ 361
++ + +F G Y C +N +GS+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103
Score = 38.1 bits (88), Expect = 7e-04
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 6/107 (5%)
Query: 73 PTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSR 132
P I+ + Q CS + D P+ + + ++ H
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQD----AEMENYAHLRA 66
Query: 133 FQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
T+ L ++ ++ T G Y+C + + S L +
Sbjct: 67 QGGELMEYTTI--LRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 53.8 bits (129), Expect = 2e-09
Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 88 QTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----------DSRFQ 134
+ A L CS P+ W K P S + ++ SR+Q
Sbjct: 10 KNAYLPCSYTLPTSGTLVPMCWGK-------GFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 135 LTTDPETSTYILSIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVR 180
L D L IK + D G Y C + L N E++L ++
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
Score = 46.1 bits (109), Expect = 1e-06
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 192 SVIVSEGQTVYLYC---YANGFPAPTISWRRD-------NSAALSTG------------- 228
V G+ YL C + W + + L T
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 229 --GSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE 271
G + +G++ L I N+T D GTY C + G+ K + ++++
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 53.1 bits (128), Expect = 3e-09
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-- 233
+ ++ + VS+G + L + W ++ + GS Y
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQE-IQMSGSKYIFE 66
Query: 234 --GNI--LKIPNITKTDRGTYYCVAQN 256
G L I + D Y CV
Sbjct: 67 SIGAKRTLTISQCSLADDAAYQCVVGG 93
Score = 46.6 bits (111), Expect = 6e-07
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 267 AVEVEFAPVITINRPRQGQALQ-YDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHF 325
+++ + + Q + + L + + W+K+G +I S S +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEI----QMSGSKY 63
Query: 326 ATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQ 361
+ +L + Y C + S +
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 40.8 bits (96), Expect = 6e-05
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
L + D V W+K I MSGS ++ + L+
Sbjct: 32 HKIRLTVELA-DHDAEVKWLKNGQ-------EIQMSGS------KYIFESIGAK--RTLT 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
I + D Y+C V K S EL V+
Sbjct: 76 ISQCSLADDAAYQCVVG---GEKCST--ELFVK 103
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 55.2 bits (133), Expect = 3e-09
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 140 ETSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVR---RPPIISDNSTRSVIV 195
+ I ++ AG Y C + ++ S ++L+V P +S V
Sbjct: 53 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLS--VHPGPEV 110
Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
G+ V YC + + + + S+ + G + + +T RGTY C
Sbjct: 111 ISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFG 168
Score = 44.8 bits (106), Expect = 1e-05
Identities = 29/181 (16%), Positives = 50/181 (27%), Gaps = 19/181 (10%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
P I +V + + V + C N + A + S
Sbjct: 4 KPFIWAEP--HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 60
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
IP++ G Y C+ + G N + V + P C
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 120
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
++ + +K+G + H + EF L +T R G Y C +
Sbjct: 121 RLD-TATSMFLLLKEG----RSSHVQRGYGKVQAEF---PLGPVTTAHR--GTYRCFGSY 170
Query: 356 K 356
Sbjct: 171 N 171
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 57.5 bits (139), Expect = 3e-09
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 263 KRNIAVEVEFAPVITINRPRQGQALQYD-AILECHVEAYPPPAIVWIKDGVQIMNNQHYS 321
R+ + A I +P + + A C V A PP + W KD ++ + Y
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530
Query: 322 VSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
+ +D L + ++ G+Y +A N YG+ ++ + L
Sbjct: 531 KRY-----NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
Score = 50.6 bits (121), Expect = 4e-07
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI--YRGNI--LKIPNITKTD 246
V EGQ+ YC P ++W +D+ + + Y GN L I + D
Sbjct: 490 YGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDD 549
Query: 247 RGTYYCVAQNGVGR 260
+G Y A+N G
Sbjct: 550 KGEYTVRAKNSYGT 563
Score = 39.8 bits (93), Expect = 0.001
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
Q+A+ C V + V W K + ++ + Y L+
Sbjct: 498 QSANFYCRVIASSPPVVTWHK--------------DDRELKQSVKYMKRYNGND--YGLT 541
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
I ++ D G Y S V L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSY-GTKEEIVFLNV 572
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 52.4 bits (126), Expect = 6e-09
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 26/124 (20%)
Query: 67 ASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
SS + + +S + + + L C + D +P W K
Sbjct: 1 GSSGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVD-FPATWYK-------------- 45
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
G + + D L + E + D+G ++C VSA + V+ P
Sbjct: 46 DGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFECRT-----EGVSAFFGVTVQDP 98
Query: 183 PIIS 186
S
Sbjct: 99 SGPS 102
Score = 49.7 bits (119), Expect = 4e-08
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+L C + + W KDG ++ ++ V + L + + + G++
Sbjct: 27 RVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSGEF 80
Query: 350 ACKAANKYGSAQ 361
C+
Sbjct: 81 ECRTEGVSAFFG 92
Score = 49.7 bits (119), Expect = 5e-08
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 182 PP--IISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIY 232
P I+S S+ + + V L C + +W +D + G +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRKH 65
Query: 233 RGNILKIPNITKTDRGTYYCVAQN 256
R L +P D G + C +
Sbjct: 66 R---LILPEAKVQDSGEFECRTEG 86
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 54.5 bits (131), Expect = 9e-09
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 7/120 (5%)
Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTRSVIVS 196
+ I ++ AG Y C + ++ S ++L+V P +S + V
Sbjct: 57 INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVH--PGPEVI 114
Query: 197 EGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQN 256
G+ V YC + + + + S+ + G + + +T RGTY C
Sbjct: 115 SGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAE-FPLGPVTTAHRGTYRCFGSY 173
Score = 46.4 bits (110), Expect = 5e-06
Identities = 27/181 (14%), Positives = 49/181 (27%), Gaps = 19/181 (10%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
P I +V + + V + C N + A + S
Sbjct: 7 KPFIWAEP--HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFY 63
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
IP++ G Y C+ + G N + V + P C
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
++ + +K+G + Y ++ L +T R G Y C +
Sbjct: 124 RLD-TATSMFLLLKEGRSSHVQRGYGKVQ-------AEFPLGPVTTAHR--GTYRCFGSY 173
Query: 356 K 356
Sbjct: 174 N 174
Score = 31.0 bits (70), Expect = 0.49
Identities = 12/77 (15%), Positives = 19/77 (24%), Gaps = 7/77 (9%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTV 201
+ + G Y+C S NN S V+L+V + +
Sbjct: 154 FPLGPVTTAHRGTYRCFG--SYNNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWG 211
Query: 202 YLYCYAN-GFPAPTISW 217
G W
Sbjct: 212 TYLLTTETGLQKDHALW 228
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 55.0 bits (132), Expect = 9e-09
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 13/119 (10%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRR---PPIISDNSTRSVIVSEG 198
SI + + AG Y+C ++ + S +++++ P +S + V G
Sbjct: 64 FSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLS--AQPGPTVLAG 121
Query: 199 QTVYLYCYANGFPAPTISWRRDNSAA---LSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
++V L C + R+ A S G + P T GTY C
Sbjct: 122 ESVTLSCS-SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFG 179
Score = 36.9 bits (85), Expect = 0.006
Identities = 19/149 (12%), Positives = 38/149 (25%), Gaps = 17/149 (11%)
Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALS--TGGSIYRGN---ILKIPNITKTDRG 248
+V +TV L C+++ R+ + G + G I + + G
Sbjct: 17 LVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAG 75
Query: 249 TYYCVAQNGVGRGMKR------NIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPP 302
TY C +I + + +P L C
Sbjct: 76 TYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSR-SSY 134
Query: 303 PAIVWIKDG----VQIMNNQHYSVSHFAT 327
++G + + + A
Sbjct: 135 DMYHLSREGEAHERRFSAGPKVNGTFQAD 163
Score = 33.4 bits (76), Expect = 0.086
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 8/79 (10%)
Query: 154 TDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG 209
T G Y+C + S + + V P S S G +L+ A
Sbjct: 170 THGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQ 229
Query: 210 ----FPAPTISWRRDNSAA 224
+ S++
Sbjct: 230 KLISEEDLNLDLVPRGSSS 248
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 55.3 bits (133), Expect = 9e-09
Identities = 29/224 (12%), Positives = 57/224 (25%), Gaps = 28/224 (12%)
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV---RRPPIISDNSTRSVIVSEG 198
++ + AG Y C + S V ++V R P + + +V G
Sbjct: 76 FNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH--PGPLVKSG 133
Query: 199 QTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTDRGTYYCV 253
+ V L C+++ ++ + + + I + GTY C
Sbjct: 134 ERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCY 192
Query: 254 AQNGVGRGM------KRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVW 307
+I V + +P L C
Sbjct: 193 GSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR-SSYDMYHL 251
Query: 308 IKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
++G + +V + + G Y C
Sbjct: 252 SREGGA-HERRLPAVRKVNRTFQADFPLGPA-----THGGTYRC 289
Score = 53.7 bits (129), Expect = 3e-08
Identities = 28/203 (13%), Positives = 54/203 (26%), Gaps = 25/203 (12%)
Query: 172 SAEVELIV---RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTG 228
+ + + P +S S +V G V L C+ +++ +
Sbjct: 11 DDDDKGSHMGGQDKPFLSAWP--SAVVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIF 67
Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMK------RNIAVEVEFAPVITINRPR 282
+ +T G Y C + I V + P
Sbjct: 68 HGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPG 127
Query: 283 Q----GQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRV 338
G+ + IL+C + K+G+ + S D S + +
Sbjct: 128 PLVKSGERV----ILQCWSD-IMFEHFFLHKEGIS----KDPSRLVGQIHDGVSKANFSI 178
Query: 339 ITIERRQFGQYACKAANKYGSAQ 361
+ G Y C + + Q
Sbjct: 179 GPMMLALAGTYRCYGSVTHTPYQ 201
Score = 53.0 bits (127), Expect = 6e-08
Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 9/132 (6%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV-RRPPII 185
SR S SI + AG Y+C ++ S ++++V
Sbjct: 161 SRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP 220
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA---LSTGGSIYRGNILKIPNI 242
S ++ V G++V L C + R+ A L + R P
Sbjct: 221 SLSAQPGPKVQAGESVTLSCSSRS-SYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLG 279
Query: 243 TKTDRGTYYCVA 254
T GTY C
Sbjct: 280 PATHGGTYRCFG 291
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 54.1 bits (130), Expect = 9e-09
Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-KVSAEVELIVR---RPPIISDNSTR 191
+ SI + E AG Y+C + + S +EL++ P +S +
Sbjct: 50 NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLS--ALP 107
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-----ILKIPNITKTD 246
S +V+ G++V L C + P T ++ +A G + +T
Sbjct: 108 SPLVTSGKSVTLLCQ-SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH 166
Query: 247 RGTYYC 252
GTY C
Sbjct: 167 GGTYRC 172
Score = 45.2 bits (107), Expect = 8e-06
Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 14/177 (7%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGN--IL 237
P + ++S G +V ++C A ++ + A + N
Sbjct: 4 PKPTLWAEP--GSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILE 294
IP++T+ G Y C ++ VG + + + ++ P L
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLL 120
Query: 295 CHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYAC 351
C P + K+ H A + ++ + +T G Y C
Sbjct: 121 CQSR-SPMDTFLLCKER-AAHPLLCLRSEHGAQQHQ-AEFPMSPVTSVHG--GTYRC 172
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 53.8 bits (129), Expect = 1e-08
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 9/129 (6%)
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV----SAEVELIV-RRPPIIS 186
R S SI + + AG Y+C ++ + S +++++ S
Sbjct: 51 RLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPS 110
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN---ILKIPNIT 243
++ V G+ V L C + R+ A + + N P
Sbjct: 111 LSAQPGPTVLAGENVTLSCS-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGP 169
Query: 244 KTDRGTYYC 252
T GTY C
Sbjct: 170 ATHGGTYRC 178
Score = 34.9 bits (80), Expect = 0.026
Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 19/162 (11%)
Query: 181 RPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA---LSTGGSIYRGN-- 235
R P + + +V +TV L C+++ R+ G +
Sbjct: 7 RKPSLLAHP--GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 236 ILKIPNITKTDRGTYYCVAQNGVGRGMKR------NIAVEVEFAPVITINRPRQGQALQY 289
I +T+ GTY C +I + + +P
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123
Query: 290 DAILECHVEAYPPPAIVWIKDG----VQIMNNQHYSVSHFAT 327
+ L C ++G ++ + + A
Sbjct: 124 NVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQAD 164
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.2 bits (123), Expect = 1e-08
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 22/100 (22%)
Query: 88 QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
++ +C + + +W G + SRFQ T YIL
Sbjct: 24 ESCSFECVLSHESASDPAMWTV--------------GGKTVGSSSRFQATRQGRK--YIL 67
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
++E +DAG V ++++ LIVR S
Sbjct: 68 VVREAAPSDAGEVVFSV-----RGLTSKASLIVRERSGPS 102
Score = 48.9 bits (117), Expect = 7e-08
Identities = 8/73 (10%), Positives = 17/73 (23%), Gaps = 6/73 (8%)
Query: 290 DAILECHV-EAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
EC + +W G + ++ + + + L V G+
Sbjct: 25 SCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR-----QGRKYILVVREAAPSDAGE 79
Query: 349 YACKAANKYGSAQ 361
A
Sbjct: 80 VVFSVRGLTSKAS 92
Score = 48.2 bits (115), Expect = 1e-07
Identities = 12/91 (13%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 191 RSVIVSEGQTVYLYCY-ANGFPAPTISWRRDNSAALSTGGSI---YRGN--ILKIPNITK 244
+++ V EG++ C ++ + W + + +G IL +
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKT-VGSSSRFQATRQGRKYILVVREAAP 74
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
+D G + + ++ V P
Sbjct: 75 SDAGEVVFSVRGLTSKA---SLIVRERSGPS 102
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 51.2 bits (123), Expect = 1e-08
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 17/101 (16%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
+ V + C + T W ++ +S G ++ L I ++
Sbjct: 16 ADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRFHK---LVIDDVR 71
Query: 244 KTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG 284
D G Y V + + V P G
Sbjct: 72 PEDEGDYTFVPDGYALSLSAK---LNFLEIKVS---GPSSG 106
Score = 50.1 bits (120), Expect = 4e-08
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 28/123 (22%)
Query: 67 ASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISM 122
+ S + + I D+ + A KC V + W K
Sbjct: 3 SGSSGQLEVL----QDIADLTVKAAEQAVFKCEVS-DEKVTGKWYK-------------- 43
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
+G + R ++ + L I +++ D G Y +S +L
Sbjct: 44 NGVEVRPSKRITISHV--GRFHKLVIDDVRPEDEGDYTFVPD---GYALSLSAKLNFLEI 98
Query: 183 PII 185
+
Sbjct: 99 KVS 101
Score = 46.6 bits (111), Expect = 5e-07
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A+ +C V W K+GV++ ++ ++SH L + + G Y
Sbjct: 25 QAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPEDEGDY 78
Query: 350 ACKAANKYGSAQ 361
S
Sbjct: 79 TFVPDGYALSLS 90
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 51.2 bits (123), Expect = 2e-08
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 12/94 (12%)
Query: 168 NNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA---- 223
+ L VR PI R+ +EG T L C + + W + +
Sbjct: 4 GSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSK--MAPVEWWKGHETLRDG 61
Query: 224 ---ALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
+L G+ L+I + D G Y C+
Sbjct: 62 DRHSLRQDGARCE---LQIRGLVAEDAGEYLCMC 92
Score = 49.7 bits (119), Expect = 7e-08
Identities = 23/96 (23%), Positives = 28/96 (29%), Gaps = 23/96 (23%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
TA L+C + PV W K + R L D L
Sbjct: 35 ATAVLRCELS--KMAPVEWWK--------------GHETLRDGDRHSLRQDGAR--CELQ 76
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I+ + DAG Y C K L VR P
Sbjct: 77 IRGLVAEDAGEYLCMC-----GKERTSAMLTVRAMP 107
Score = 42.7 bits (101), Expect = 2e-05
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A+L C + + W K + + +S+ + + L++ + G+Y
Sbjct: 36 TAVLRCELS--KMAPVEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAEDAGEY 88
Query: 350 ACKAANKYGSAQ 361
C + SA
Sbjct: 89 LCMCGKERTSAM 100
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 172 SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------A 224
S+ I+ + V + V L C P + W +D
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60
Query: 225 LSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
L ++ R L +P + D G Y C
Sbjct: 61 LQKEDTVRR---LVLPAVQLEDSGEYLCEI 87
Score = 48.6 bits (116), Expect = 2e-07
Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 28/125 (22%)
Query: 65 SLASSQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYP-VIWMKMDTAKKMEPLP 119
S SS + + +A + L C + + V W K
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTK----------- 48
Query: 120 ISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
G ++ L + L + +Q D+G Y CE+ + SA + V
Sbjct: 49 ---DGEEVVESPALLLQKEDTVRR--LVLPAVQLEDSGEYLCEI-----DDESASFTVTV 98
Query: 180 RRPPI 184
PP+
Sbjct: 99 TEPPV 103
Score = 47.4 bits (113), Expect = 3e-07
Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+L C + P + W KDG +++ + + E + L + ++ G+Y
Sbjct: 30 RVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSGEY 83
Query: 350 ACKAANKYGSAQ 361
C+ ++ S
Sbjct: 84 LCEIDDESASFT 95
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 51.1 bits (122), Expect = 2e-08
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 5/102 (4%)
Query: 88 QTADLKCSVQ-YADDYPVIWMKMDTAK-KMEPLPISMSGSLIIH--DSRFQLTTDPETST 143
L C+ Y W + + I +G + + SR+ L
Sbjct: 13 HPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGD 72
Query: 144 YILSIKEIQETDAGIYKCEVIIS-LNNKVSAEVELIVRRPPI 184
L+I+ E+D+G+Y C V I N L V+ +
Sbjct: 73 VSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
Score = 46.8 bits (111), Expect = 6e-07
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 25/112 (22%)
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISWRRDN----------------------SAAL 225
S V G V L C Y+ T W R S+
Sbjct: 3 SYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRY 62
Query: 226 STGGSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPV 275
+ G I G++ L I N ++D G Y C V G K +++V+ V
Sbjct: 63 NLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELV 114
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 50.4 bits (121), Expect = 2e-08
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A+ E E + W + G I + Y ++ E + +L V + G Y
Sbjct: 25 PAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT-----EGTRHTLTVREVGPADQGSY 78
Query: 350 ACKAANKYGSAQ 361
A A +
Sbjct: 79 AVIAGSSKVKFD 90
Score = 48.5 bits (116), Expect = 1e-07
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGN 235
++P RSV V+ G + W+R S +S G
Sbjct: 4 GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSD-ISASNKYGLATEGT 61
Query: 236 I--LKIPNITKTDRGTYYCVA 254
L + + D+G+Y +A
Sbjct: 62 RHTLTVREVGPADQGSYAVIA 82
Score = 46.6 bits (111), Expect = 6e-07
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 22/92 (23%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
A + + V W + GS I +++ L T+ T L+
Sbjct: 24 SPAVFEAETE-RAGVKVRWQR--------------GGSDISASNKYGLATEGTRHT--LT 66
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
++E+ D G Y + +L V
Sbjct: 67 VREVGPADQGSYAVIA-----GSSKVKFDLKV 93
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 50.7 bits (121), Expect = 2e-08
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 88 QTADLKC--SVQYADDYPVIWMKMDTAK-KMEPLPISMSGSLIIH--DSRFQLTTDPETS 142
L C S P+ W + I +G + H +SR+QL +
Sbjct: 13 HPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEG 72
Query: 143 TYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPP 183
L+I+ D G Y C V I + V +E+ P
Sbjct: 73 NVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
Score = 48.8 bits (116), Expect = 1e-07
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 189 STRSVIVSEGQTVYLYC-Y-ANGFPAPTISWRRDN----------------------SAA 224
S +V G V L C Y + + W ++
Sbjct: 3 SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62
Query: 225 LSTGGSIYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAP 274
G+I GN+ L I N D G Y C V G + + V+ E P
Sbjct: 63 YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.4 bits (121), Expect = 2e-08
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 22/96 (22%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
A L+C + + PV W +++ ++ L + L
Sbjct: 24 GAATLRCVLS-SVAAPVKWCY--------------GNNVLRPGDKYSLRQEGAMLE--LV 66
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
++ ++ D+G Y C + L V P
Sbjct: 67 VRNLRPQDSGRYSCSF-----GDQTTSATLTVTALP 97
Score = 47.7 bits (114), Expect = 2e-07
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSI---YRGNI--LKIPNITKT 245
+ + V EG L C + AP + W N+ L G G + L + N+
Sbjct: 16 KDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNV-LRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 246 DRGTYYCVA 254
D G Y C
Sbjct: 74 DSGRYSCSF 82
Score = 46.6 bits (111), Expect = 5e-07
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A L C + + P + W + YS+ E + L V + + G+Y
Sbjct: 25 AATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSGRY 78
Query: 350 ACKAANKYGSAQ 361
+C ++ SA
Sbjct: 79 SCSFGDQTTSAT 90
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 50.4 bits (121), Expect = 3e-08
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
V+ G+ V L C + P + W +D A + G++ L I +
Sbjct: 16 EDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGAS 71
Query: 244 KTDRGTYYCVAQNGVG 259
D G Y C +
Sbjct: 72 LKDAGEYTCEVEASKS 87
Score = 50.0 bits (120), Expect = 3e-08
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ +L+C + PV W+K D I ++ + + + L
Sbjct: 24 EDVELRCELS-RAGTPVHWLK-D-------------RKAIRKSQKYDVVCEGTMAM--LV 66
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I+ DAG Y CEV + L V
Sbjct: 67 IRGASLKDAGEYTCEV-----EASKSTASLHVEEKA 97
Score = 48.8 bits (117), Expect = 1e-07
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
D L C + P + W+KD I +Q Y V E + L + + G+Y
Sbjct: 25 DVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGTMAMLVIRGASLKDAGEY 78
Query: 350 ACKAANKYGSAQ 361
C+ +A
Sbjct: 79 TCEVEASKSTAS 90
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 50.5 bits (121), Expect = 3e-08
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 17/93 (18%)
Query: 169 NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA----- 223
+ S +V + + P + V G + L C ++W +D
Sbjct: 3 SGSSGKV-VFAKEQPAHRE-----VQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSS 55
Query: 224 --ALSTGGSIYRGNILKIPNITKTDRGTYYCVA 254
+ G R L + + + G Y C A
Sbjct: 56 KVRVEAVGCTRR---LVVQQAGQAEAGEYSCEA 85
Score = 48.6 bits (116), Expect = 1e-07
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A L C V + W KDG ++ ++ V L V + + G+Y
Sbjct: 28 SATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAGEY 81
Query: 350 ACKAANKYGSAQ 361
+C+A + S +
Sbjct: 82 SCEAGGQQLSFR 93
Score = 45.1 bits (107), Expect = 2e-06
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 22/92 (23%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+A L C V V W K D G + S+ ++ T L
Sbjct: 27 ASATLSCEVA-QAQTEVTWYK-D-------------GKKLSSSSKVRVEAVGCTRR--LV 69
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
+++ + +AG Y CE L V
Sbjct: 70 VQQAGQAEAGEYSCEA-----GGQQLSFRLQV 96
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 50.7 bits (121), Expect = 3e-08
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 21/121 (17%)
Query: 78 ISQEQIKDIA-QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIH----- 129
+S++ I Q L C + W K P S + ++
Sbjct: 1 MSEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGK-------GSCPNSKCNAELLRTDGTR 53
Query: 130 -----DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV-IISLNNKVSAEVELIVRRPP 183
+++ L + L+I D+G+Y C + + N V V L +RR
Sbjct: 54 IISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRAL 113
Query: 184 I 184
+
Sbjct: 114 V 114
Score = 46.5 bits (110), Expect = 8e-07
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPT-ISWRRD-------NSAALSTGGS--------- 230
S ++I GQ V L C Y + + + W + N+ L T G+
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 231 ------IYRGNI-LKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAPV 275
+ G + L I N + D G Y C + G +K+N+ +E+ A V
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALV 114
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 50.0 bits (120), Expect = 4e-08
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR----GNI--LKIPNITK 244
G+ V L C + + W ++ + S YR G L I TK
Sbjct: 15 EDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 245 TDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
D Y + G ++V+++ P
Sbjct: 74 ADAAEYSVMTTGGQSSA---KLSVDLKSGP 100
Score = 43.1 bits (102), Expect = 9e-06
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
LEC V + W K+G +I+ S + E L + + +Y
Sbjct: 24 RVELECEVSE-DDANVKWFKNGEEIIPGPK---SRYRIRVEGKKHILIIEGATKADAAEY 79
Query: 350 ACKAANKYGSAQKEIEL 366
+ SA+ ++L
Sbjct: 80 SVMTTGGQSSAKLSVDL 96
Score = 42.3 bits (100), Expect = 2e-05
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ +L+C V DD V W K +G II + + E +IL
Sbjct: 23 ERVELECEVS-EDDANVKWFK--------------NGEEIIPGPKSRYRIRVEGKKHILI 67
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I+ + DA Y + SA++ + ++ P
Sbjct: 68 IEGATKADAAEYSVMT---TGGQSSAKLSVDLKSGP 100
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 49.6 bits (119), Expect = 5e-08
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 21/96 (21%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ LKC + +++ P W K +G + R ++ + L
Sbjct: 23 KEICLKCEI--SENIPGKWTK--------------NGLPVQESDRLKVVQK--GRIHKLV 64
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I D G Y V+ ++ V P
Sbjct: 65 IANALTEDEGDYVFAPD---AYNVTLPAKVHVISGP 97
Score = 46.6 bits (111), Expect = 5e-07
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 12/74 (16%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
V+ G+ + L C + W ++ + G I++ L I N
Sbjct: 15 TDQTVNLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVVQKGRIHK---LVIANAL 69
Query: 244 KTDRGTYYCVAQNG 257
D G Y
Sbjct: 70 TEDEGDYVFAPDAY 83
Score = 40.0 bits (94), Expect = 1e-04
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+ L+C + P W K+G+ + + V + L + G Y
Sbjct: 24 EICLKCEISENIPG--KWTKNGLPVQESDRLKVVQ-----KGRIHKLVIANALTEDEGDY 76
Query: 350 ACKAANKYGSA 360
+
Sbjct: 77 VFAPDAYNVTL 87
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.9 bits (126), Expect = 5e-08
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 177 LIVRRPPIISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAALSTGGSIY-RG 234
L RR P + + + G +V L C T+ W AA S G
Sbjct: 1 LAPRRCPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG 59
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGRGMK 263
L + ++ D G Y C +
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVH 88
Score = 37.1 bits (85), Expect = 0.006
Identities = 28/191 (14%), Positives = 52/191 (27%), Gaps = 40/191 (20%)
Query: 68 SSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSL 126
+ +R P + L C +D + W+ A P + G
Sbjct: 2 APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRR 61
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
L ++ +Q D+G Y C + + V L+V PP
Sbjct: 62 -------------------LLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPP--- 95
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKT 245
+ L C+ + W ++ +L+T + P
Sbjct: 96 ------------EEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQ 143
Query: 246 DRGTYYCVAQN 256
+ Y +Q
Sbjct: 144 EPCQYSQESQK 154
Score = 32.1 bits (72), Expect = 0.25
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 290 DAILECH-VEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ 348
L C VE + W+ + + L + +++ G
Sbjct: 23 SVTLTCPGVEPEDNATVHWVLRK-PAAGSHPSRWA-------GMGRRLLLRSVQLHDSGN 74
Query: 349 YACKAANKYGS 359
Y+C A +
Sbjct: 75 YSCYRAGRPAG 85
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 49.7 bits (119), Expect = 5e-08
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 12/73 (16%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
++ SEG T L C + + W++ +L G+ L+I +++
Sbjct: 16 KTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE---LQIHDLS 70
Query: 244 KTDRGTYYCVAQN 256
D G Y C+
Sbjct: 71 VADAGEYSCMCGQ 83
Score = 49.3 bits (118), Expect = 7e-08
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 23/97 (23%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
TA L+C + + PV W K + R+ L D L
Sbjct: 24 ATATLQCEL--SKVAPVEWKK--------------GPETLRDGGRYSLKQDGTR--CELQ 65
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184
I ++ DAG Y C + L VR P
Sbjct: 66 IHDLSVADAGEYSCMC-----GQERTSATLTVRALPA 97
Score = 47.8 bits (114), Expect = 3e-07
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A L+C + + W K + + YS+ + + L++ + G+Y
Sbjct: 25 TATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAGEY 77
Query: 350 ACKAANKYGSAQ 361
+C + SA
Sbjct: 78 SCMCGQERTSAT 89
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 51.8 bits (124), Expect = 5e-08
Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 13/131 (9%)
Query: 136 TTDPETSTYILSIKEIQETDAGIYKCEVIISLN-NKVSAEVELIVRR---PPIISDNSTR 191
+ SI + E AG Y+C ++ S +EL+V P +S +
Sbjct: 50 NPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLS--ALP 107
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGN-----ILKIPNITKT 245
S +V+ G+ V L C + + LS T S + + + +T +
Sbjct: 108 SPVVTSGENVTLQCG-SRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPS 166
Query: 246 DRGTYYCVAQN 256
R C
Sbjct: 167 HRWMLRCYGSR 177
Score = 46.8 bits (111), Expect = 3e-06
Identities = 23/184 (12%), Positives = 54/184 (29%), Gaps = 13/184 (7%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRD-NSAALSTGGSIYRGN--ILK 238
+ ++S G +V + C A ++ + T + N
Sbjct: 5 KATLWAEP--GSVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFS 61
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRN---IAVEVEFAPVITINRPRQGQALQYDAILEC 295
IP++T+ G Y C + G + + V + P + L+C
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQC 121
Query: 296 HVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAAN 355
+ ++G ++ S + + + + +T R C +
Sbjct: 122 GSR-LRFDRFILTEEGDHKLSWTLDSQLTPSGQFQ-ALFPVGPVTPSHR--WMLRCYGSR 177
Query: 356 KYGS 359
++
Sbjct: 178 RHIL 181
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 51.8 bits (124), Expect = 6e-08
Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 14/137 (10%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN--KVSAEVELIVRR---PPII 185
I I G Y+C + S +EL+V P +
Sbjct: 45 PWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTL 104
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALS-TGGSIYRGN-----ILKI 239
S S +V+ G V L C + ++ S I +
Sbjct: 105 SA--QPSPVVNSGGNVTLQCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSV 161
Query: 240 PNITKTDRGTYYCVAQN 256
++ + R Y C A +
Sbjct: 162 GPVSPSRRWWYRCYAYD 178
Score = 39.8 bits (93), Expect = 5e-04
Identities = 30/186 (16%), Positives = 53/186 (28%), Gaps = 16/186 (8%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG---NILK 238
P + ++++G V L C R+ A
Sbjct: 5 KPTLWAEP--GSVITQGSPVTLRCQGGQ-ETQEYRLYREKKTAPWITRIPQELVKKGQFP 61
Query: 239 IPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE-----FAPVITINRPRQGQALQYDAIL 293
IP+IT G Y C + + + +E+ P ++ P + L
Sbjct: 62 IPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ-PSPVVNSGGNVTL 120
Query: 294 ECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKA 353
+C + K+G S H S + S+ ++ RR Y C A
Sbjct: 121 QCD-SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSR-AIFSVGPVSPSRR--WWYRCYA 176
Query: 354 ANKYGS 359
+
Sbjct: 177 YDSNSP 182
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 48.9 bits (117), Expect = 8e-08
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 9/75 (12%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI--------LKIPNI 242
V G V + + + W ++ R L ++
Sbjct: 16 EDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDV 74
Query: 243 TKTDRGTYYCVAQNG 257
+ DRG Y + G
Sbjct: 75 VQEDRGRYQVITNGG 89
Score = 44.6 bits (106), Expect = 2e-06
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+ V + ++W+K+GV++ + + + + L + + G+Y
Sbjct: 25 RVEMAVEV-SEEGAQVMWMKNGVELTREDSFK-ARYRFKKDGKRHILIFSDVVQEDRGRY 82
Query: 350 ACKAANKYGSAQ 361
A+
Sbjct: 83 QVITNGGQCEAE 94
Score = 39.6 bits (93), Expect = 1e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
++ V + V+WMK + ++ S +R++ D + +IL
Sbjct: 24 DRVEMAVEVSE-EGAQVMWMK-------NGVELTREDSF---KARYRFKKDGKR--HILI 70
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
++ + D G Y+ N E ELIV
Sbjct: 71 FSDVVQEDRGRYQVIT-----NGGQCEAELIV 97
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 48.8 bits (117), Expect = 8e-08
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A E + + P W G + + + + L + + G+
Sbjct: 22 TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTGEV 75
Query: 350 ACKAANKYGSAQ 361
+ +AAN +A
Sbjct: 76 SFQAANTKSAAN 87
Score = 45.8 bits (109), Expect = 9e-07
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 11/73 (15%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
V V G+T + P W+ + G + L + N
Sbjct: 13 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI---LILHNCQ 68
Query: 244 KTDRGTYYCVAQN 256
G A N
Sbjct: 69 LGMTGEVSFQAAN 81
Score = 43.8 bits (104), Expect = 4e-06
Identities = 11/116 (9%), Positives = 27/116 (23%), Gaps = 30/116 (25%)
Query: 69 SQRTPTISYISQEQIKDIA----QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG 124
+ + + + + +TA + + D W G
Sbjct: 2 AMALIEVE----KPLYGVEVFVGETAHFEIELSE-PDVHGQWKL--------------KG 42
Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
+ ++ D + L + Q G + + L V+
Sbjct: 43 QPLAASPDCEIIEDGKKHI--LILHNCQLGMTGEVSFQA-----ANTKSAANLKVK 91
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.5 bits (116), Expect = 1e-07
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
+ A P + W K+G +I + Y H + L + + +Y
Sbjct: 25 RVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDSEY 78
Query: 350 ACKAANKYGSAQ 361
A ++ S +
Sbjct: 79 YVTAGDEKCSTE 90
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 11/82 (13%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRG 234
+ + V +G V P + W ++ G
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYKNGQEIRPSTKYIFEHKGCQRI- 64
Query: 235 NILKIPNITKTDRGTYYCVAQN 256
L I N TD YY A +
Sbjct: 65 --LFINNCQMTDDSEYYVTAGD 84
Score = 46.2 bits (110), Expect = 8e-07
Identities = 17/96 (17%), Positives = 22/96 (22%), Gaps = 22/96 (22%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ V W K +G I +++ IL
Sbjct: 24 GRVRFVVELAD-PKLEVKWYK--------------NGQEIRPSTKYIFEHK--GCQRILF 66
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
I Q TD Y EL VR P
Sbjct: 67 INNCQMTDDSEYYVTA-----GDEKCSTELFVRSGP 97
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 50.5 bits (120), Expect = 1e-07
Identities = 21/168 (12%), Positives = 41/168 (24%), Gaps = 14/168 (8%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
+ + V ++ + C + L + +
Sbjct: 10 KKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDTVL 65
Query: 251 YCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQG-QALQYDAILECHVEAYPPPA---IV 306
C G+ N V V P I + A+ +EC V P +
Sbjct: 66 QCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 307 WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQ-YACKA 353
+ + A T+ T +R + ++C A
Sbjct: 125 LFRGNETLHYETFGK----AAPAPQEATATFNSTADREDGHRNFSCLA 168
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 48.1 bits (115), Expect = 2e-07
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQY 349
A+ C E +P + W K +++ + + S E L + +E+ Y
Sbjct: 25 TAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSDTY 78
Query: 350 ACKAANKYGSAQ 361
C AQ
Sbjct: 79 TCDIGQAQSRAQ 90
Score = 46.9 bits (112), Expect = 5e-07
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA-------ALSTGGSIYRGNILKIPNIT 243
++ V E T C PA T++WR+ S G R L I +
Sbjct: 16 TNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR---LTISALE 71
Query: 244 KTDRGTYYCVA 254
K D TY C
Sbjct: 72 KADSDTYTCDI 82
Score = 44.2 bits (105), Expect = 4e-06
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 22/97 (22%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
TA C ++ V W K + + Q + + T L+
Sbjct: 24 GTAVFTCKTEHPA-ATVTWRK--------------GLLELRASGKHQPSQEGLTLR--LT 66
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPI 184
I +++ D+ Y C++ + + +L+V+
Sbjct: 67 ISALEKADSDTYTCDI-----GQAQSRAQLLVQGRRS 98
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 47.2 bits (112), Expect = 5e-07
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 92 LKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKE 150
L S ++Y + W K +E +S+F+ + + L I +
Sbjct: 24 LNISESLPENYKQLTWFYTFDQKIVEWDS----RKSKYFESKFKGRVRLDPQSGALYISK 79
Query: 151 IQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+Q+ D Y V+ N+ +++L V P
Sbjct: 80 VQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112
Score = 40.3 bits (94), Expect = 1e-04
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 192 SVIVSEGQTVYLYCYAN-GFPAPTISWRRD--------NSAALSTGGSIYRGNI------ 236
+ V G V L + ++W +S S ++G +
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 237 --LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV----ITINR 280
L I + K D TY G + I ++V PV I I +
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV-LDPVPKPVIKIEK 121
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 46.4 bits (110), Expect = 8e-07
Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 88 QTADLKCSVQYAD---DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
+ ++C Y W + + + + GS + R + P ++
Sbjct: 12 GSLSVQC--PYEKEHRTLNKYWCRPPQIFLCDKI-VETKGSAGKRNGRVSIRDSPANLSF 68
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIV 179
++++ + E DAG Y C V EVE+ V
Sbjct: 69 TVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSV 106
Score = 35.2 bits (81), Expect = 0.007
Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 21/105 (20%)
Query: 191 RSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAA-----LSTGGSIYRGN--------- 235
R+V G ++ + C Y W R + T GS + N
Sbjct: 4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSP 63
Query: 236 -----ILKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVEFAP 274
+ + N+T+ D GTY+C V + + VEV P
Sbjct: 64 ANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 46.0 bits (109), Expect = 9e-07
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 88 QTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ ++C + D +W + + +PL +S + R TD +
Sbjct: 13 SSILVQCHYRLQDVKAQKVWCRFL-PEGCQPL-VSSAVDRRAPAGRRTFLTDLGGGLLQV 70
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ +QE DAG Y C V + ++ V L + PP
Sbjct: 71 EMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI-LPP 106
Score = 31.0 bits (70), Expect = 0.17
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 19/99 (19%)
Query: 191 RSVIVSEGQTVYLYC-YANGFPAPTISWRRDN--------SAALSTGGSIYRGNILKIP- 240
+ G ++ + C Y W R S+A+ R L
Sbjct: 5 EVLQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLG 64
Query: 241 ---------NITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
+ + D G Y C+ G + +++ +
Sbjct: 65 GGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNI 103
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 47.5 bits (113), Expect = 2e-06
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 20/179 (11%)
Query: 195 VSEGQTVYLYCYANGFPAP---TISWRRDNSAALSTG------GSIYRGN-ILKIPNITK 244
+ G L C G T +W + + G Y + +L
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 75
Query: 245 TDRGTYYCVAQN---GVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYP 301
T+ C A + + V + P + AL L C +
Sbjct: 76 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFS 135
Query: 302 PPAIV--WIKDGVQIMNNQHYSVSHFATSDE----FSDTS-LRVITIERRQFGQYACKA 353
P ++ W++ ++ ++ + + + F+ TS LRV + ++ ++C
Sbjct: 136 PKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV 194
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 47.6 bits (113), Expect = 2e-06
Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 20/181 (11%)
Query: 192 SVIVSEGQTVYLYCYANGF----PAPTISWRRDNSAALS---------TGGSIYRGNILK 238
++ G T + C P SW D+ + + ++ + L
Sbjct: 26 KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELP 85
Query: 239 IPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILEC 295
I + T+ C +G + P + P + + Q + C
Sbjct: 86 IVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITC 145
Query: 296 HVEA-YPPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACK 352
V+ YPP W +G N ++ + T + S L V +Q + C
Sbjct: 146 MVKGFYPPDIYTEWKMNGQPQENYKN-TPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCS 204
Query: 353 A 353
Sbjct: 205 V 205
Score = 32.2 bits (73), Expect = 0.21
Identities = 24/153 (15%), Positives = 41/153 (26%), Gaps = 21/153 (13%)
Query: 79 SQEQIKDIAQTADLKCSV----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQ 134
+ + T + C V Q + W D S +S
Sbjct: 24 KTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQS----NSTL- 78
Query: 135 LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPIISDNSTR 191
S L I E + +KC+V + S R P + +
Sbjct: 79 ------RSVSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP 132
Query: 192 SVIVSEGQTVYLYCYANGF-PAP-TISWRRDNS 222
+++ V + C GF P W+ +
Sbjct: 133 KEEMTQS-QVSITCMVKGFYPPDIYTEWKMNGQ 164
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 46.4 bits (109), Expect = 3e-06
Identities = 35/180 (19%), Positives = 54/180 (30%), Gaps = 25/180 (13%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ +L C + D + W K + LP L++ D F D + Y+
Sbjct: 15 TSVELTCPLD--SDENLKWEKNG-----QELPQKHDKHLVLQD--FSEVED--SGYYVCY 63
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISD--------NSTRSVIVSEGQ 199
+ K V + + K A + ++ D N +
Sbjct: 64 TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123
Query: 200 TVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVG 259
+V L C G TI W +D S N + N K RGTY C
Sbjct: 124 SVLLTC---GLTDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETS 177
Score = 46.0 bits (108), Expect = 5e-06
Identities = 26/187 (13%), Positives = 52/187 (27%), Gaps = 47/187 (25%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILKIPNITKT-DRGTYYCVAQN 256
G +V L C + + W ++ L + + ++ D G Y C
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPA 66
Query: 257 G-------------VGRGMKRNIAVEVE---------FAPVITINRPRQGQALQYD--AI 292
K++ A + + + Q + D +
Sbjct: 67 SNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVL 126
Query: 293 LECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACK 352
L C + I W+KDG I + + + + + G Y C+
Sbjct: 127 LTCGL---TDKTIKWLKDGSII------------SPLNATKNTWNLGNNAKDPRGTYQCQ 171
Query: 353 AANKYGS 359
A + +
Sbjct: 172 GAKETSN 178
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 46.4 bits (110), Expect = 4e-06
Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 20/179 (11%)
Query: 194 IVSEGQTVYLYCYANGF----PAPTISWRRDNSAALST--------GGSIYRGN-ILKIP 240
+++ T + C P SW D+ + S +R L I
Sbjct: 14 VLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIM 73
Query: 241 NITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
+ + + C + + AP + P + Q + L C +
Sbjct: 74 HQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMI 133
Query: 298 EAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKA 353
+ P I W +G N + T + S L V + C
Sbjct: 134 TDFFPEDITVEWESNGQPA-ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 191
Score = 36.8 bits (85), Expect = 0.007
Identities = 22/153 (14%), Positives = 40/153 (26%), Gaps = 21/153 (13%)
Query: 79 SQEQIKDIAQTADLKCSV----QYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQ 134
+ + I T + C V + + W D +S F
Sbjct: 10 KPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQF----NSTF- 64
Query: 135 LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPIISDNSTR 191
S L I + +KC V + + + + P +
Sbjct: 65 ------RSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPP 118
Query: 192 SVIVSEGQTVYLYCYANGF-PAP-TISWRRDNS 222
+++ V L C F P T+ W +
Sbjct: 119 KEQMAKD-KVSLTCMITDFFPEDITVEWESNGQ 150
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 44.5 bits (105), Expect = 4e-06
Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 88 QTADLKCSVQYAD-----DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
+ + C Y W + L S + R LT PE
Sbjct: 16 NSVSITC--YYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
T++++I ++ + D+G YKC + I+ + +S +V L V
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
Score = 34.1 bits (78), Expect = 0.021
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 24/103 (23%)
Query: 191 RSVIVSEGQTVYLYC-YANGFPAPT--ISWRR-------------DNSAALSTGG--SI- 231
V EG +V + C Y W R + + G ++
Sbjct: 8 EEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT 67
Query: 232 -YRGN---ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
+ N ++ I +++ D G Y C RG+ ++++EV
Sbjct: 68 NFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEV 109
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 43.7 bits (103), Expect = 8e-06
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 11/92 (11%)
Query: 88 QTADLKCSVQY------ADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTD 138
+ C Y ++ IW + + I ++ R +L +
Sbjct: 16 SCLLIPCIFSYPADVPVSNGITAIWYYDYS--GKRQVVIHSGDPKLVDKRFRGRAELMGN 73
Query: 139 PETSTYILSIKEIQETDAGIYKCEVIISLNNK 170
+ L +K+++ D+G Y IS +N+
Sbjct: 74 MDHKVCNLLLKDLKPEDSGTYNFRFEISDSNR 105
Score = 31.4 bits (71), Expect = 0.14
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 27/92 (29%)
Query: 188 NSTRSVIVSEGQTVYLYCY------ANGFPAPTISWRRDNSAA----------------- 224
+S ++V G + + C T W D S
Sbjct: 5 SSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRF 64
Query: 225 ---LSTGGSIYRGNI-LKIPNITKTDRGTYYC 252
G++ L + ++ D GTY
Sbjct: 65 RGRAELMGNMDHKVCNLLLKDLKPEDSGTYNF 96
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 45.4 bits (107), Expect = 1e-05
Identities = 28/188 (14%), Positives = 52/188 (27%), Gaps = 28/188 (14%)
Query: 195 VSEGQTVYLYCYANGFPAP---TISWRRDNSAALST--------GGSIYRGN-ILKIPNI 242
+ L C P+ +++W R+ S L Y + + +
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84
Query: 243 TKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEA 299
+ C Q+ + P+I P + L C V
Sbjct: 85 DWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRG 144
Query: 300 YPPPAI--VWIKDGVQI----------MNNQHYSVSHFATSDEFSDTS-LRVITIERRQF 346
+ P I W++D + + + + D F S + V T +
Sbjct: 145 FRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGG 204
Query: 347 GQYACKAA 354
+AC A
Sbjct: 205 TVFACMAV 212
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 43.4 bits (102), Expect = 2e-05
Identities = 23/145 (15%), Positives = 41/145 (28%), Gaps = 37/145 (25%)
Query: 171 VSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSA---- 223
+ + V P + G L C + W R +
Sbjct: 1 MRGSGQFRVIGP-------GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53
Query: 224 -------------------ALSTGGSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGRGMK 263
SI G + L+I N+ +D G Y C ++ +
Sbjct: 54 LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113
Query: 264 RNIAVEVEFAPVITINRPRQGQALQ 288
+ ++VE P IN P + ++
Sbjct: 114 -AVELKVE-DPFYWIN-PGRSRSHH 135
Score = 38.0 bits (88), Expect = 0.001
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 16/116 (13%)
Query: 88 QTADLKCSV---QYADDYPVIWMKMDTAK-------KMEPLPISMSGSLIIHDSRFQLTT 137
A+L C + + A V W + ++ + + R +L
Sbjct: 22 DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE----YRGRTELLK 77
Query: 138 DPETSTYI-LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
+ + L I+ ++ +D G Y C + A VEL V P +
Sbjct: 78 ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINPGRSR 132
Score = 28.4 bits (63), Expect = 2.6
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 18/95 (18%)
Query: 290 DAILECHVEAYPPP---AIVWIK-----------DGVQIMNNQHYS----VSHFATSDEF 331
+A L C + + W + +G Q S
Sbjct: 23 EAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGE 82
Query: 332 SDTSLRVITIERRQFGQYACKAANKYGSAQKEIEL 366
+LR+ + G Y C + + +EL
Sbjct: 83 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 42.8 bits (101), Expect = 2e-05
Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 88 QTADLKCSVQYAD-DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ ++C DY W + + + L + + ++ +R + + + +
Sbjct: 17 GSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTV 76
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
++++++ +DAGIY C + +V + +
Sbjct: 77 TMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNI 108
Score = 33.9 bits (78), Expect = 0.021
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 22/105 (20%)
Query: 191 RSVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGG--SIY-- 232
V E ++ + C Y +G+ W D S L SI
Sbjct: 9 EEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDN 68
Query: 233 -RGNI--LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAP 274
R I + + ++ +D G Y+C G G + V + P
Sbjct: 69 QRDFIFTVTMEDLRMSDAGIYWCGITKG-GLDPMFKVTVNIGPVP 112
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 41.9 bits (98), Expect = 3e-05
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 88 QTADLKCSVQYADDYP---VIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPET 141
++C Y V W+ + + +G I R +++
Sbjct: 17 GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG 76
Query: 142 STYILSIKEIQETDAGIYKCEVIISLNN----KVSAEVELIVRR 181
L I +Q D Y CEV + +EL VR+
Sbjct: 77 DVS-LQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVRK 119
Score = 32.2 bits (73), Expect = 0.080
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 27/110 (24%)
Query: 189 STRSVIVSEGQTVYLYCY---ANGFPAPTISWRRDNSAALST-----------GGSIYRG 234
+ SV + V + C G+ + W + + T + YRG
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 235 NI-----------LKIPNITKTDRGTYYCVAQNGV--GRGMKRNIAVEVE 271
+ L+I + DR Y C G + R+ +E+
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELR 116
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 43.7 bits (103), Expect = 4e-05
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 46/221 (20%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPL-PISMSGSLIIHDSRFQ----LTTDPETS 142
+A++ C + + W K + L S ++ +S T
Sbjct: 18 SSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRK 77
Query: 143 TYILSIKEIQETDAGIYKC------------------EVIISLNNKVSAEVELIVRRPPI 184
+ ++ + E D+G+Y C V + A+ + +
Sbjct: 78 NLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQ 137
Query: 185 ISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGGS 230
+ SV + + V L C Y + + I W R+ + + G
Sbjct: 138 KVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGR 197
Query: 231 IYRGNI--------LKIPNITKTDRGTYYCVAQNGVGRGMK 263
Y N L I + D Y+C + R K
Sbjct: 198 -YSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADK 237
Score = 31.7 bits (72), Expect = 0.34
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 25/89 (28%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISW-------------RRDNSAALSTGGSIYRGN 235
T+SVI G + + C I W D+ + S
Sbjct: 8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPG 67
Query: 236 I------------LKIPNITKTDRGTYYC 252
+ + N+ + D G YYC
Sbjct: 68 KYDTYGSTRKNLRMILRNLIENDSGVYYC 96
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 41.9 bits (98), Expect = 4e-05
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 12/108 (11%)
Query: 88 QTADLKCSVQ----YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS------RFQLTT 137
L CS +DD W + + D R Q
Sbjct: 15 SQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG 74
Query: 138 DPETSTYILSIKEIQETDAGIYKCEVIISLNNKV-SAEVELIVR-RPP 183
DP + I + +D G + C+V + +++V L V + P
Sbjct: 75 DPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKVP 122
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 196 SEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNI-LKIPNITKTDRGTYYCVA 254
+ ++ YA G P G + + I N+ +D GT+ C
Sbjct: 43 GGRDAISIFHYAKGQPYIDEVGTFKERIQWV--GDPSWKDGSIVIHNLDYSDNGTFTCDV 100
Query: 255 QNGVGRGMK 263
+N K
Sbjct: 101 KNPPDIVGK 109
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 43.5 bits (101), Expect = 7e-05
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 8/136 (5%)
Query: 119 PISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELI 178
P + G++ P T + +Q G Y + + +EL
Sbjct: 229 PAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELA 287
Query: 179 VRRPPIIS-DNSTRSVIVSEGQTVYLYCYANGF---PAPTISWRRDNSAALSTGGSIYRG 234
V +PP +S +T + L C + F + W G
Sbjct: 288 VYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG--PGGRSQKAEG 345
Query: 235 NILKIPNITKTDRGTY 250
+D G+
Sbjct: 346 QRWLSALRHHSD-GSV 360
Score = 42.3 bits (98), Expect = 2e-04
Identities = 29/173 (16%), Positives = 51/173 (29%), Gaps = 19/173 (10%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSA-----ALSTGGSIYRGNILKIPNITKTDRGTYYC 252
G+ L G + + A G +P + GTY
Sbjct: 212 GKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLA 271
Query: 253 VAQNGVGRGMKRNIAVEVEFAPVITINRPR--QGQALQYDAILECHVEAYPPPAIV---W 307
+G + + + V P +++ + + L C V + P + W
Sbjct: 272 TIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEW 330
Query: 308 IKDG-----VQIMNNQHYSVSHFATSDE-FSDTS-LRVITIERRQFGQ-YACK 352
G Q Q + + SD S + L+ + Q G YAC+
Sbjct: 331 ELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACR 383
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 43.4 bits (102), Expect = 8e-05
Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 22/199 (11%)
Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDN----SAALSTGG 229
++ P + ++ + + C P ISW +N +A T
Sbjct: 235 LLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR 294
Query: 230 SIYRGN-----ILKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE--FAPVITINRP 281
Y L I + + C V + ++R I+ AP + + P
Sbjct: 295 EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPP 354
Query: 282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMNNQHY-SVSHFATSDEFSDTS-LR 337
+ + + L C V + P + W +G +N ++ V S + S LR
Sbjct: 355 PEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS--YFMYSKLR 412
Query: 338 VITIERRQFGQYACKAANK 356
V + Y+C ++
Sbjct: 413 VEKKNWVERNSYSCSVVHE 431
Score = 32.2 bits (73), Expect = 0.30
Identities = 34/173 (19%), Positives = 59/173 (34%), Gaps = 18/173 (10%)
Query: 214 TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV------GRGMKRNIA 267
TIS RDN+ +T +Y L++ + D YYC G G+G ++
Sbjct: 69 TIS--RDNAK--NT---LY----LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVS 117
Query: 268 VEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFAT 327
AP + P G L C V+ Y P + + + + H +
Sbjct: 118 SAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH-TFPAVLQ 176
Query: 328 SDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPI 380
SD ++ +S +T C A+ S + + ++ R
Sbjct: 177 SDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCK 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 8e-05
Identities = 30/244 (12%), Positives = 69/244 (28%), Gaps = 52/244 (21%)
Query: 5 SPFDFVNRFQNTSTPWDPSTQ------KPIRFFIHEVTGEKVTSVILLFKM--------- 49
SP + Q DP+ I+ IH + E +L K
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLL 251
Query: 50 SVAGPSIIVALSF----LI-----SLASSQRTPTISYISQEQIKDI---AQTADL--KCS 95
+V A + L+ + T ++IS + + L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 96 VQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD-SRF----QLTTDPETSTYILSIKE 150
D P P +S+ I + + + D T+ S+
Sbjct: 312 DCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 151 IQETDA-GIYKCEVIISLNNKVSAEV------ELIVRRPPIISDN-STRSVIV--SEGQT 200
++ + ++ + + + + ++I ++ + S++ + T
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 201 VYLY 204
+ +
Sbjct: 426 ISIP 429
Score = 38.3 bits (88), Expect = 0.004
Identities = 37/285 (12%), Positives = 77/285 (27%), Gaps = 85/285 (29%)
Query: 127 IIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIIS 186
I+ + K++Q+ I E++ I+ +
Sbjct: 21 ILSVFEDAFVDN-------FDCKDVQDMPKSILS-----------KEEIDHIIMSKD--A 60
Query: 187 DNSTR---SVIVSEGQTVYLYCYANGFPAPTISW------RRDNSAALSTGGSIYRGNIL 237
+ T ++S+ + + + + ++ T I + + L
Sbjct: 61 VSGTLRLFWTLLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 238 K--IPNITKTDRGTYYCVAQNGVGRGMK----RNIAVEVEFAPVITINRPRQG------Q 285
K + V R R +E+ A + I G
Sbjct: 120 YNDNQVFAKYN-----------VSRLQPYLKLRQALLELRPAKNVLI----DGVLGSGKT 164
Query: 286 ALQYDAILECHVEAYPPPAIVWIKDG--------VQIMNNQHYSVSHFATS--DEFSDTS 335
+ D L V+ I W+ ++++ Y + TS D S+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 336 LRVITIE---RRQFGQYACKAANKYGSA---------QKEIELFD 368
LR+ +I+ RR + Y + K F+
Sbjct: 225 LRIHSIQAELRRLL------KSKPYENCLLVLLNVQNAKAWNAFN 263
Score = 37.5 bits (86), Expect = 0.007
Identities = 53/405 (13%), Positives = 113/405 (27%), Gaps = 126/405 (31%)
Query: 8 DFVNRFQNTSTPWDP---STQKPIRFFIHEVTGEKVTSVILLFKMSVAGPSIIVALSFLI 64
+ +R N + + S +P + + +L+ + +G + +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----- 168
Query: 65 SLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSG 124
D+ + ++C + D+ + W+ + E + +
Sbjct: 169 --------------------DVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK 204
Query: 125 SLIIHDSRFQLTTDPETSTYILSIKEIQET---------------------DAGIYK--- 160
L D + +D +S L I IQ +A +
Sbjct: 205 LLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 161 --CEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTV---YLYCYANGFP--AP 213
C+++++ K + I D+ + ++ E +++ YL C P
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 214 TIS--------------------WRRDNSAALST--GGSI-------YRGN-----IL-- 237
T + W+ N L+T S+ YR +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 238 --KIPNITKT-----DRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD 290
IP T V V + K ++ + I+I ++ +
Sbjct: 384 SAHIP--TILLSLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISIP------SIYLE 434
Query: 291 AILEC------H---VEAYPPPAIVWIKDGVQIMNNQHYSVSHFA 326
++ H V+ Y P + D + Y SH
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSHIG 478
Score = 33.7 bits (76), Expect = 0.13
Identities = 31/265 (11%), Positives = 77/265 (29%), Gaps = 93/265 (35%)
Query: 2 IAPSPFDFVNRFQNTSTPW-------------------DPSTQKPI--RFFIHEVTGEKV 40
IA S D + + N W +P+ + + R + +
Sbjct: 333 IAESIRDGLATWDN----WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHI 387
Query: 41 TS---VILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLK---- 93
+ ++ F + + ++V SL Q + I ++ + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 94 ----------------CSVQYADDY---------------------PVI-----WMKMDT 111
Y D Y ++ +++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--- 504
Query: 112 AK-KMEPLPISMSGSLI--IHDSRF---QLT-TDPETSTYILSIKE-IQETDAGIYKCE- 162
K + + + SGS++ + +F + DP+ + +I + + + + + +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 163 ---VIISLNNKVSA---EVELIVRR 181
+ I+L + A E V+R
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 41.0 bits (96), Expect = 9e-05
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 7/99 (7%)
Query: 88 QTADLKC--SVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPETS 142
QT D+KC +++ W + + + L + S H R L +
Sbjct: 20 QTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHG 79
Query: 143 TYILSIKEIQETDAGIYKCEVIISLNNKV--SAEVELIV 179
+ + +Q D+G+Y+C + + L+V
Sbjct: 80 LLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
Score = 30.2 bits (68), Expect = 0.40
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 40/141 (28%)
Query: 170 KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT--ISW---------- 217
++ A +L + + EGQT+ + C + +W
Sbjct: 2 ELRAATKL-----------TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPK 50
Query: 218 ------RRDNSAALSTGG--SIYRGN-----ILKIPNITKTDRGTYYCVAQNGVGRGMKR 264
R ++ G + + +++ N+ D G Y C + + K
Sbjct: 51 TLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSGLYQC----VIYQPPKE 106
Query: 265 NIAVEVEFAPVITINRPRQGQ 285
+ V+T+
Sbjct: 107 PHMLFDRIRLVVTLEHHHHHH 127
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 40.2 bits (94), Expect = 1e-04
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGFPAPT-ISWRRDNSAAL---------STGGSIYR 233
I + S + G V L + + I+W + + + S ++
Sbjct: 4 IRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFK 63
Query: 234 GNI--------LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
G + L I N+ K D+GTYY +K + V F PV
Sbjct: 64 GRVYLEENNGALHISNVRKEDKGTYYMRVLRETENELKITLEV---FDPV 110
Score = 39.4 bits (92), Expect = 2e-04
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 92 LKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQ--LTTDPETSTYILSI 148
LK Y I W+ K +E + + + I +S F+ + + + L I
Sbjct: 23 LKIHKDPLGPYRRITWLHTKNQKILE---YNYNSTKTIFESEFKGRVYLEE--NNGALHI 77
Query: 149 KEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP 182
+++ D G Y + + ++ L V P
Sbjct: 78 SNVRKEDKGTYYMR--VLRETENELKITLEVFDP 109
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 42.2 bits (99), Expect = 1e-04
Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 39/213 (18%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI------- 236
R+ + G V L C + W R+D L GS +G+I
Sbjct: 7 RNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 65
Query: 237 --------LKIPNITKTDRGTYYCVAQN----------GVGRGMKRNIAVEVEFAPVITI 278
L + T + Y+C + G G + + P +++
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSL 125
Query: 279 NRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMN-NQHYSVSHFATSDEFSDT 334
P + + A L C + P + W +G ++ + ++ ++ + +
Sbjct: 126 FEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLS 185
Query: 335 S-LRVITIERRQFGQ-YACKAANKYGSAQKEIE 365
S LRV + C+ S + +
Sbjct: 186 SRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 218
Score = 35.7 bits (82), Expect = 0.015
Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 25/178 (14%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD---SRFQLTTDPETSTY 144
L C Q + + W + DT + + S ++ + P +
Sbjct: 15 GKVTLSCQ-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYK-ASRPSQEQF 72
Query: 145 ILSIKEIQETDAGIYKCEVIISLNN----------KVSAEVELIVRRPPIISDNSTRSVI 194
L ++ + +Y C + +++ +L PP +S
Sbjct: 73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAE 132
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTY 250
++ Q L C A GF P +SW + + +G S P K +Y
Sbjct: 133 IANKQKATLVCLARGFFPDHVELSWWVNGK-EVHSGVSTD-------PQAYKESNYSY 182
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 40.3 bits (94), Expect = 1e-04
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 88 QTADLKCSVQYADD--YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
+ L+C + V W + D + L I + F+ P
Sbjct: 19 GSIILQCHLSSTTAQVTQVNWEQQD-----QLLAICNADLGWHISPSFKDRVAPGPG-LG 72
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNS 189
L+++ + D G Y C + + + L V + +
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 16/104 (15%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAP--TISWRRDNSAAL----STGGSI---YRGNI--- 236
+T ++ +G ++ L C+ + A ++W + + G I ++ +
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68
Query: 237 ----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI 276
L + ++T D G Y+C+ I +EV + V
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 41.5 bits (97), Expect = 1e-04
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ + CS ++ Y + W + +TAK E L + R T + + L
Sbjct: 16 DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLY 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
IK Q D+ Y C L V D + + S+ C
Sbjct: 76 IKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDK-SVCLF 134
Query: 208 NGFP--APTISWRRDNSA 223
F + ++
Sbjct: 135 TDFDSQTNVSQSKDSDAY 152
Score = 33.0 bits (75), Expect = 0.11
Identities = 23/171 (13%), Positives = 46/171 (26%), Gaps = 31/171 (18%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRR------------DNSAALSTGGSIYRGNI-- 236
+S+ V EG + C + W R +
Sbjct: 8 QSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNT 67
Query: 237 ------LKIPNITKTDRGTYYCVAQNGV----GRGMKRNIAVEVEFAPVITINRPRQGQA 286
L I D TY C G G G + ++ + + R ++
Sbjct: 68 KEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDP-AVYQLRDSKS 126
Query: 287 LQYDAILECHVEAYPP-PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSL 336
C + + KD + ++ +V + D S++++
Sbjct: 127 ---SDKSVCLFTDFDSQTNVSQSKDSDAYITDK--TVLDMRSMDFKSNSAV 172
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 40.2 bits (94), Expect = 1e-04
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 9/104 (8%)
Query: 88 QTADLKCSVQ-----YADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
+ L C +Q + W + + M + G R + +
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQ-GPSYSESKRLEFVAARLGA 74
Query: 143 TYI---LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
L + ++ D G Y C + S ++ L V P
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 37.1 bits (86), Expect = 0.002
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 35/104 (33%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPT-----ISWRRDNSAALSTGGS 230
+++V+ P V G +V L CY ++W R +
Sbjct: 1 DVVVQAPT--------QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFH 52
Query: 231 IYRGNI----------------------LKIPNITKTDRGTYYC 252
+G L++ + D G Y C
Sbjct: 53 QTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTC 96
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 30/104 (28%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN----GFPAPTISWRRDNSA-------- 223
L V +PP + EG + +L C N +++W RD
Sbjct: 8 ALWVSQPP--------EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNG 59
Query: 224 ---------ALSTGGSIYRGNI-LKIPNITKTDRGTYYCVAQNG 257
L++ ++ L I ++ D Y C +
Sbjct: 60 TPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
Score = 35.7 bits (82), Expect = 0.005
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 7/99 (7%)
Query: 88 QTADLKCSVQYADD----YPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETST 143
+A L CS + V W + + + + + +
Sbjct: 23 SSAFLPCSFNASQGRLAIGSVTWFRDEVVPG--KEVRNGTPEFRGRLAPLASSRFLHDHQ 80
Query: 144 YILSIKEIQETDAGIYKCEVIISLNNKVSAE-VELIVRR 181
L I++++ DA IY C V + + L+V +
Sbjct: 81 AELHIRDVRGHDASIYVCRVEVLGLGVGTGNGTRLVVEK 119
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 41.2 bits (96), Expect = 1e-04
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 7/127 (5%)
Query: 137 TDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS 196
P + + + +QE C + + +A+ L V P + +
Sbjct: 43 LLPGNNRKVYELSNVQED--SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQP 99
Query: 197 EGQTVYLYCYA-NGFPAP--TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYY-C 252
G+ + L C G P T+ R + + + G + C
Sbjct: 100 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSC 159
Query: 253 VAQNGVG 259
+ +
Sbjct: 160 RTELDLR 166
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 41.8 bits (98), Expect = 2e-04
Identities = 34/217 (15%), Positives = 61/217 (28%), Gaps = 42/217 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-----STGGSIYRGNI-------- 236
+++ G + L C G P + W R+ L S G +
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASR 68
Query: 237 -------LKIPNITKTDRGTYYCVAQNGV---------GRGMKRNIAVEVE--FAPVITI 278
L + +D G Y C V G G + ++ F P + +
Sbjct: 69 PQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAV 128
Query: 279 NRPRQGQALQYD-AILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS 335
P + + A L C + P + W +G ++ + +D+
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 188
Query: 336 ------LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + + C+ S E
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225
Score = 36.0 bits (83), Expect = 0.013
Identities = 30/157 (19%), Positives = 56/157 (35%), Gaps = 19/157 (12%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD---SRFQLTTDPETSTY 144
L+C+V+ + + W + + ++ L G I + +
Sbjct: 17 SPLSLECTVEGTSNPNLYWYRQAAGRGLQLL-FYSVGIGQISSEVPQNLSASRPQDRQFI 75
Query: 145 ILSIKEIQETDAGIYKCEVIISLNN-----------KVSAEVELIVRRPPIISDNSTRSV 193
LS K++ +D+G Y C +S+ ++ +L PP ++
Sbjct: 76 -LSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEA 134
Query: 194 IVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG 228
+S Q L C A GF P +SW N + +G
Sbjct: 135 EISHTQKATLVCLATGFFPDHVELSWWV-NGKEVHSG 170
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 39.4 bits (91), Expect = 2e-04
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 198 GQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR---GNILKIPNITKT-DRGTYYCV 253
G TV L C P I W+ ++ + L + ++ G Y C
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 254 AQNGVG 259
+
Sbjct: 79 PRGSKP 84
Score = 29.4 bits (65), Expect = 0.63
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 9/74 (12%)
Query: 290 DAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITI-ERRQFGQ 348
IL C YP I+W + I + + L + E Q G
Sbjct: 23 TVILTC--PQYPGSEILWQHNDKNI------GGDEDDKNIGSDEDHLSLKEFSELEQSGY 74
Query: 349 YACKAANKYGSAQK 362
Y C
Sbjct: 75 YVCYPRGSKPEDAN 88
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 39.4 bits (92), Expect = 2e-04
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 15/104 (14%)
Query: 88 QTADLKCSVQYA-----DDYPVIWMKMDTAKKMEPLPISMSG--SLIIHDSRFQLTTDPE 140
+TADL C + + V W + L G S++ T +
Sbjct: 10 ETADLPCQFANSQNQSLSELVVFWQDQEN----LVLNEVYLGKEKFDSVHSKYMGRTSFD 65
Query: 141 TSTYILSIKEIQETDAGIYKCEVI----ISLNNKVSAEVELIVR 180
+ ++ L + +Q D G+Y+C + + EL V
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109
Score = 37.5 bits (87), Expect = 0.001
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 23/102 (22%)
Query: 193 VIVSEGQTVYLYCY-----ANGFPAPTISWRRDNSAALST---GGSIY------------ 232
+ +T L C + W+ + L+ G +
Sbjct: 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS 63
Query: 233 --RGNI-LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVE 271
+ L++ N+ D+G Y C+ + GM R + E
Sbjct: 64 FDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 39.9 bits (93), Expect = 2e-04
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 88 QTADLKCSVQY----ADDYPVIWMKMDTA-KKMEPLPISMSGSLIIHDS------RFQLT 136
+TA L C + W+ +K++ + I SG I D R T
Sbjct: 21 ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT 80
Query: 137 TDPETSTYI-LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
++ S +++ +Q +D G Y+C+V + + ++ L+V
Sbjct: 81 SNDLKSGDASINVTNLQLSDIGTYQCKVKKA-PGVANKKIHLVV 123
Score = 35.6 bits (82), Expect = 0.006
Identities = 18/116 (15%), Positives = 34/116 (29%), Gaps = 33/116 (28%)
Query: 189 STRSVIVSEGQTVYLYCY----ANGFPAPTISWRRDNSAALST----------------- 227
+ ++G+T YL C I W +
Sbjct: 11 PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70
Query: 228 ----------GGSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGRGMKR-NIAVEVE 271
+ G+ + + N+ +D GTY C + G K+ ++ V V+
Sbjct: 71 PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLVK 126
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 42.2 bits (99), Expect = 2e-04
Identities = 43/328 (13%), Positives = 76/328 (23%), Gaps = 62/328 (18%)
Query: 67 ASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYP----VIWMKMDTAKKMEPLPISM 122
++ P++ ++ L C V+ +P V W + + P +
Sbjct: 114 SAKTTPPSVYPLAPGSAAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVL 171
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVI-ISLNNKVSAEVELIVRR 181
L S +T + C V + + KV ++
Sbjct: 172 QSDLYTLSS--SVTVPSSPR------------PSETVTCNVAHPASSTKVDKKIVPRDCG 217
Query: 182 PPIISDNSTRSVIVS-----------EGQTVYLYCYANGF----PAPTISWRRDN----- 221
V T + C P SW DN
Sbjct: 218 CKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHT 277
Query: 222 ----SAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG---VGRGMKRNIAVEVEFAP 274
+ + L I + + + C + + AP
Sbjct: 278 AQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAP 337
Query: 275 VITINRPRQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN------NQHYSVSHFA 326
+ P + Q + L C + + P + W DG N S+F
Sbjct: 338 QVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFV 397
Query: 327 TSDEFSDTSLRVITIERRQFGQYACKAA 354
S L V + C
Sbjct: 398 YS------KLNVQKSNWEAGNTFTCSVL 419
Score = 33.7 bits (77), Expect = 0.088
Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 35/221 (15%)
Query: 192 SVIVSEGQTVYLYCYANGFP--APTISW-RRDNSAALSTGGSIYRGN------------- 235
+ + G +V + C A+G+ TI W ++ L G I +
Sbjct: 8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKA 67
Query: 236 -----------ILKIPNITKTDRGTYYCVAQNGV---GRGMKRNIAVEVEFAPVITINRP 281
+ + ++T D YYCV + V G+G ++ P + P
Sbjct: 68 TLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAP 127
Query: 282 RQGQALQYDAILECHVEAY-PPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVI 339
L C V+ Y P P V W + + +V SD ++ +S +
Sbjct: 128 GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV---LQSDLYTLSSSVTV 184
Query: 340 TIERRQFGQYACKAANKYGSAQKEIELFDRETQTGDETFPI 380
R C A+ S + + ++ R+ +
Sbjct: 185 PSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTV 225
Score = 33.0 bits (75), Expect = 0.17
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 22/142 (15%)
Query: 101 DYPVIWMKMDTAKKMEPLP-ISMSGSLIIHD----SRFQLTTDPETSTYILSIKEIQETD 155
Y + W+K + +E + I+ S ++ + LT D ++T + + + D
Sbjct: 30 TYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSDD 89
Query: 156 AGIYKCEVIISLNN-------KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYAN 208
+ +Y C + VS+ PP + + S + V L C
Sbjct: 90 SAVYYCVREGEVPYWGQGTTVTVSSAKT----TPPSVYPLAPGSAAQT-NSMVTLGCLVK 144
Query: 209 GF-PAP-TISWRRDNSAALSTG 228
G+ P P T++W NS +LS+G
Sbjct: 145 GYFPEPVTVTW---NSGSLSSG 163
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.8 bits (92), Expect = 2e-04
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 8/79 (10%)
Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
+ W K K L +S + T L I ++ D G Y+ EV
Sbjct: 47 IKWFK----GKWLELGSKSGARFSFKES---HNSASNVYTVELHIGKVVLGDRGYYRLEV 99
Query: 164 IISLNNKVSAEVELIVRRP 182
+ + S + V P
Sbjct: 100 -KAKDTCDSCGFNIDVEAP 117
Score = 39.4 bits (91), Expect = 3e-04
Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 16/85 (18%)
Query: 191 RSVIVSEGQTVYLYCYANGFP---APTISWRRDNSAALST-------------GGSIYRG 234
SV V G+ + NG PTI W + L + S
Sbjct: 20 DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYT 79
Query: 235 NILKIPNITKTDRGTYYCVAQNGVG 259
L I + DRG Y +
Sbjct: 80 VELHIGKVVLGDRGYYRLEVKAKDT 104
Score = 33.2 bits (75), Expect = 0.040
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 11/86 (12%)
Query: 290 DAILECHVEAYP---PPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTS------LRVIT 340
DA++ V P I W K + + S + F+ + + S L +
Sbjct: 29 DAVVVAKVNGKELPDKPTIKWFKG--KWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86
Query: 341 IERRQFGQYACKAANKYGSAQKEIEL 366
+ G Y + K +
Sbjct: 87 VVLGDRGYYRLEVKAKDTCDSCGFNI 112
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 41.0 bits (96), Expect = 3e-04
Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 42/217 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRG--------- 234
R +V GQ V L C P +SW ++D L + G
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68
Query: 235 -----NILKIPNITKTDRGTYYCVAQNGV---------GRGMKRNIAVEVE--FAPVITI 278
L++ + T YC + G G K + +++ F P + +
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAV 128
Query: 279 NRPRQGQALQYD-AILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDT- 334
P + + A L C + P + W +G ++ + +D+
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSR 188
Query: 335 -----SLRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + + C+ S E
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225
Score = 35.3 bits (81), Expect = 0.025
Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 19/157 (12%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPETSTY 144
Q +L+C ++ + + W + D K+++ L S S L T +
Sbjct: 17 QAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE- 75
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSAEV-----ELIVRRPPIISDNSTRSVI----- 194
L ++ + C +L V +V
Sbjct: 76 -LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEA 134
Query: 195 -VSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG 228
+S Q L C A GF P +SW N + +G
Sbjct: 135 EISHTQKATLVCLATGFYPDHVELSWWV-NGKEVHSG 170
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 41.4 bits (97), Expect = 3e-04
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 45/220 (20%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-------STGGSIYRGNI------ 236
VI G +V + C + F A T+ W R+ +L + Y +
Sbjct: 32 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 91
Query: 237 ----------LKIPNITKTDRGTYYCVAQN-----------GVGRGMKRNIAVEVEFAPV 275
L + + D Y C A++ G G + ++ F P
Sbjct: 92 INHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPE 151
Query: 276 ITINRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFS 332
+ + P + + A L C + P + W +G ++ + +
Sbjct: 152 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALN 211
Query: 333 DTS------LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
D+ LRV + + C+ S E
Sbjct: 212 DSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 251
Score = 32.2 bits (73), Expect = 0.21
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 17/153 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQ----LTTDPETST 143
+ ++C + W + + + + S GS ++ + L +
Sbjct: 40 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTL 99
Query: 144 YILSIKEIQETDAGIYKC-----------EVIISLNNKVSAEVELIVRRPPIISDNSTRS 192
L++ D+ Y C E +++ +L PP ++
Sbjct: 100 STLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSE 159
Query: 193 VIVSEGQTVYLYCYANGF-PAP-TISWRRDNSA 223
+S Q L C A GF P +SW +
Sbjct: 160 AEISHTQKATLVCLATGFYPDHVELSWWVNGKE 192
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 41.5 bits (97), Expect = 4e-04
Identities = 36/292 (12%), Positives = 67/292 (22%), Gaps = 45/292 (15%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKC--EVIISLNNKV-----SAEVELIVRRPP 183
R T D +T + + ++ D +Y C + ++ V + P
Sbjct: 67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPT 126
Query: 184 IISDNSTRSVIVSEGQTVYLYCYANGF-PAP--TISWRRDNS--------AALSTGGSIY 232
V + C GF P +++W + G +Y
Sbjct: 127 SPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLY 186
Query: 233 RG-NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQ------ 285
+ L +P + C ++ + V P
Sbjct: 187 TTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCH 246
Query: 286 -------------ALQYDAILECHVEAYPPP---AIVWIKDGVQIMNNQHYSVSHFATSD 329
L +A L C + W +
Sbjct: 247 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERD---LCG 303
Query: 330 EFSDTSLRVITIERRQFGQ-YACKAANKYGSAQKEIELFDRETQTGDETFPI 380
+S +S+ E G+ + C AA L E +
Sbjct: 304 CYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLL 355
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 41.4 bits (97), Expect = 4e-04
Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 30/201 (14%)
Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTISWRRDNSA--ALSTGGSI 231
++ P + + +T + C P +W D T
Sbjct: 244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPRE 303
Query: 232 YRGN-------ILKIPNITKTDRGTYYC-VAQNGVGRGMKRNIAVEVE--FAPVITINRP 281
+ N +L + + + Y C V+ + +++ I+ P + P
Sbjct: 304 EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP 363
Query: 282 RQGQALQYDAILECHVEAYPPP--AIVWIKDGVQIMN------NQHYSVSHFATSDEFSD 333
+ + + L C V+ + P A+ W +G N S F S
Sbjct: 364 SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYS----- 418
Query: 334 TSLRVITIERRQFGQYACKAA 354
L V +Q ++C
Sbjct: 419 -KLTVDKSRWQQGNVFSCSVM 438
Score = 29.8 bits (67), Expect = 1.4
Identities = 30/168 (17%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 214 TISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV--------------- 258
T + D SA +T Y +++ ++ D YYC
Sbjct: 69 TFT--ADTSA--NT---AY----MELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVW 117
Query: 259 GRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAY-PPPAIV-WIKDGVQIMN 316
G+G ++ P + P A L C V+ Y P P V W +
Sbjct: 118 GKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV 177
Query: 317 NQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
+ +V +S +S +S+ + Y C +K + + +
Sbjct: 178 HTFPAV--LQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK 223
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 39.2 bits (91), Expect = 4e-04
Identities = 18/111 (16%), Positives = 27/111 (24%), Gaps = 19/111 (17%)
Query: 88 QTADLKCSVQ----YADDYPVIWMKMDTAKKMEPLPI--SMSGSLIIHDSRFQ------- 134
T +L C + V W + D + + G
Sbjct: 18 GTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVS 77
Query: 135 ------LTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIV 179
T+ E L++ + D G Y CE V L V
Sbjct: 78 AKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 28.8 bits (64), Expect = 1.3
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 190 TRSVIVSEGQTVYLYCYANG--FPAPTISWRRDNSAALSTGGSIYRGNI-----LKIPNI 242
R + Q V + G FP+P R + + L + +
Sbjct: 41 QRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGL 100
Query: 243 TKTDRGTYYC 252
T D G Y C
Sbjct: 101 TVEDEGNYTC 110
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 39.4 bits (92), Expect = 4e-04
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 88 QTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSLI-IHDSRFQLTTDPETSTYI 145
A CS+ +++D + W ++ + + E +G + D+RFQ+ P +
Sbjct: 25 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFH 84
Query: 146 LSIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPI 184
++I + + D+GIY C I + S EL+V +
Sbjct: 85 MNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERIL 126
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 39.2 bits (91), Expect = 4e-04
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 10/82 (12%)
Query: 92 LKCSVQYADDYP-------VIWMKMDTAKKMEPLPISMSGSLIIHDS---RFQLTTDPET 141
++CS Y D W + + + + + + + RF L DP+T
Sbjct: 26 VRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQT 85
Query: 142 STYILSIKEIQETDAGIYKCEV 163
LSI++ + +DAG Y +
Sbjct: 86 KNCTLSIRDARMSDAGRYFFRM 107
Score = 29.5 bits (66), Expect = 0.72
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 30/110 (27%)
Query: 191 RSVIVSEGQTVYLYC-------YANGFPAPTISWRRDNSAALSTG--------------- 228
SV V EG V++ C W R +
Sbjct: 14 SSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEET 73
Query: 229 -------GSIYRGNI-LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
G N L I + +D G Y+ + G + + + V
Sbjct: 74 RDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSV 123
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 41.0 bits (96), Expect = 5e-04
Identities = 34/204 (16%), Positives = 73/204 (35%), Gaps = 31/204 (15%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAA----LSTGGSIYRGNI----------- 236
S + GQ V + C + T++W + L ++ +
Sbjct: 9 SASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGT 68
Query: 237 ---LKIPNITKTDRGTYYCVAQNG------VGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
L I + D YYC + N G G K + + + P +T+ P +
Sbjct: 69 SASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQ 128
Query: 288 QYDAILECHVEAY-PPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQ 345
A L C + + P V W DG + + ++++++ +S +++ Q
Sbjct: 129 ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASS--YLSLTPEQ 186
Query: 346 FGQ---YACKAANKYGSAQKEIEL 366
+ Y+C+ ++ + +K +
Sbjct: 187 WKSHRSYSCQVTHEGSTVEKTVAP 210
Score = 38.7 bits (90), Expect = 0.003
Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 28/318 (8%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI--IHDSRFQLTTDPETSTYI 145
Q + C+ + V W + + L I + RF + ++
Sbjct: 16 QRVTISCTGTSSGSITVNWYQQLPGMAPK-LLIYRDAMRPSGVPT-RFSGSKS--GTSAS 71
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVS-----EGQT 200
L+I ++ D Y C S +N V N T ++ +
Sbjct: 72 LAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANK 131
Query: 201 VYLYCYANGF-PAP-TISWRRDNSAALSTG----------GSIYRG-NILKIPNITKTDR 247
L C + F P T++W+ + + + G + Y + L +
Sbjct: 132 ATLVCLISDFYPGAVTVAWKA-DGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH 190
Query: 248 GTYYCVAQNG---VGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPA 304
+Y C + V + + P + P A L C V+ Y P
Sbjct: 191 RSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQP 250
Query: 305 IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
+ + + + H + +S +S +S+ + Y C +K + + +
Sbjct: 251 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK 310
Query: 365 ELFDRETQTGDETFPIFY 382
+ + P
Sbjct: 311 RVEPLSLPSVFLFPPKPK 328
Score = 37.9 bits (88), Expect = 0.004
Identities = 43/190 (22%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 196 SEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTGGSIYRGNILKIP------------- 240
+ G T L C + P P T+SW NS AL++G + P
Sbjct: 232 TSGGTAALGCLVKDYFPQPVTVSW---NSGALTSG-------VHTFPAVLQSSGLYSLSS 281
Query: 241 --NITKTDRG--TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQAL--QYDAILE 294
+ + G TY C N K + VE P + + P+ L +
Sbjct: 282 VVTVPSSSLGTQTYICNV-NHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVT 340
Query: 295 CHVEAYPPPA----IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYA 350
C V W DGVQ+ N + S + L V+ +Y
Sbjct: 341 CVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK 400
Query: 351 CKAANKYGSA 360
CK +NK A
Sbjct: 401 CKVSNKALPA 410
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 38.7 bits (90), Expect = 5e-04
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKV--SAEVELIV 179
R L + + + +Q D+G+Y+C + + L+V
Sbjct: 63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
Score = 30.2 bits (68), Expect = 0.47
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 25/93 (26%)
Query: 186 SDNSTRSVIVSEGQTVYLYCYANGFPAPT--ISWRR----------------DNSAALST 227
+ + + EGQT+ + C + +W+ ++
Sbjct: 2 TKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQ 61
Query: 228 GG--SIYRGN-----ILKIPNITKTDRGTYYCV 253
G + + +++ N+ D G Y CV
Sbjct: 62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCV 94
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 39.6 bits (92), Expect = 6e-04
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 3/138 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ C+ + W + + + L + + F+ T D T+++ L
Sbjct: 16 DFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQ 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
+QE D+ +Y C + +L V P I + + + + C
Sbjct: 76 KTSVQEIDSAVYYCAANSGTYQRFGTGTKLQV-VPNIQNPDPAVYQLRDSKSSDKSVCLF 134
Query: 208 NGFP--APTISWRRDNSA 223
F + +
Sbjct: 135 TDFDSQTNVSQSKDSDVY 152
Score = 31.9 bits (72), Expect = 0.20
Identities = 27/180 (15%), Positives = 52/180 (28%), Gaps = 46/180 (25%)
Query: 192 SVIVSEGQTVYLYC---------------YANGFPAPTISWRRDN--------SAALSTG 228
V +SE +++ C Y+ P + N A G
Sbjct: 9 QVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKG 68
Query: 229 GSIYRGNILKIPNITKTDRGTYYCVAQNGV----GRGMKRNIAVEVEFAPVITINRPRQG 284
+ + L+ ++ + D YYC A +G G G K + ++ Q
Sbjct: 69 TTSF---HLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPA----VYQL 121
Query: 285 QALQYDAILECHVEAYPPPAIV--WIKDGVQI----------MNNQHYSVSHFATSDEFS 332
+ + C + V V I M+ + S ++ +F+
Sbjct: 122 RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 181
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 40.9 bits (94), Expect = 7e-04
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRDNSA--ALSTGGSIYRGNILKIPNITKTDRG 248
R G T L C + W+ N A S + L I N+++ D G
Sbjct: 541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSG 599
Query: 249 TYYCVAQ-NGVGRGMKRNIA---VEVEFAPVITI 278
Y C+++ + + + +A +EV+ P +
Sbjct: 600 VYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVV 633
Score = 31.3 bits (69), Expect = 0.56
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 123 SGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNN-------KVSAEV 175
+G L ++ L L I + E D+G+Y+C +S +V A+
Sbjct: 570 NGVLKAESPKYGLMGRKN-----LLIFNLSEGDSGVYQC---LSEERVKNKTVFQVVAKH 621
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTV 201
L V+ P T SV+ +EG +
Sbjct: 622 VLEVKVVPKPVVAPTLSVVQTEGSRI 647
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 7e-04
Identities = 58/336 (17%), Positives = 109/336 (32%), Gaps = 96/336 (28%)
Query: 61 SFLISLASSQRT---PTISYISQEQIKDIAQTADLKCSVQYA-DDYPV----IWMK-MD- 110
+S S + PT S+ Q+++ + + +A DD P + K +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 111 TAKKMEPLPIS-MSGSLIIHDSRFQLTTDPETSTYILSIKEI--------QETDAGIYKC 161
+ +EP + L + + F+ + Y L +I QE D + K
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFE-------NCY-LEGNDIHALAAKLLQENDTTLVKT 119
Query: 162 EVIISLNNKVSAEVELIVRRPPIISDNST--RSVIVSE--------GQ---TVY------ 202
+ +I N ++A + + +RP NS R+V GQ Y
Sbjct: 120 KELIK--NYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD 175
Query: 203 LYC-YANGFPAPTISWRRDNSAAL--------STGGSIY-RG-NI---LKIPNITKTDRG 248
LY Y + I SA ++ +G NI L+ P+ T
Sbjct: 176 LYQTY-HVLVGDLI----KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT---PD 227
Query: 249 TYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIVWI 308
Y ++ + + P+I + Q Y ++ + + P +
Sbjct: 228 KDYLLS-------------IPISC-PLIGVI-----QLAHY--VVTAKLLGFTPGELRSY 266
Query: 309 KDGVQIMNNQHYSVSHFATSD---EFSDTSLRVITI 341
G + + A +D F + + IT+
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Score = 39.3 bits (91), Expect = 0.002
Identities = 45/302 (14%), Positives = 81/302 (26%), Gaps = 118/302 (39%)
Query: 4 PSPFDFVNRFQNTSTPWDPSTQ----KPIRF-------FIH-----EVTGEKVTSVILLF 47
+ + +N S P PI H ++ G +
Sbjct: 210 TQGLNILEWLENPSNT--PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 48 K-MSVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLK------CSVQYAD 100
K + ++ A+ I+ S E + A + A
Sbjct: 268 KGATGHSQGLVTAV--AIAETDSW----------ESFFVSVRKA-ITVLFFIGVRCYEA- 313
Query: 101 DYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYK 160
YP LP S+ + DS L + + +LSI + +
Sbjct: 314 -YPNT-----------SLPPSI-----LEDS---LENNEGVPSPMLSIS-------NLTQ 346
Query: 161 CEV--IISLNNKVSAEVELIVRRPPIIS-DNSTRSVIVSEGQTVYLYCYANGFPAPTISW 217
+V ++ N + + IS N ++++VS G P
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVE-----ISLVNGAKNLVVS------------GPPQ----- 384
Query: 218 RRDNSAALSTGGSIYRGNI----LKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFA 273
S+Y N+ K P + D Q+ + +R + F
Sbjct: 385 ------------SLYGLNLTLRKAKAP--SGLD--------QSRI-PFSERKLKFSNRFL 421
Query: 274 PV 275
PV
Sbjct: 422 PV 423
Score = 35.4 bits (81), Expect = 0.032
Identities = 28/216 (12%), Positives = 55/216 (25%), Gaps = 83/216 (38%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK------IPNI 242
STR + +S G + PT S+ + + L+ +P
Sbjct: 5 STRPLTLSHGSLEH------VLLVPTASF--------------FIASQLQEQFNKILPEP 44
Query: 243 TKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI---------TINRPRQGQALQYDAIL 293
T A + E + + Q+D +L
Sbjct: 45 T--------------------EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 294 E---CHVEAYPPPAIVWIKDGVQIM--NNQHYSVSHFATSDEFS-DTSLRVITIERRQFG 347
E + N+ H + ++ + + +I + +
Sbjct: 85 NLCLTEFEN-------------CYLEGNDIHALAAKLLQENDTTLVKTKELI----KNY- 126
Query: 348 QY-ACKAANKYGSAQKEIELFDRETQTGD-ETFPIF 381
A A + + LF R G+ + IF
Sbjct: 127 -ITARIMAKRPFDKKSNSALF-RAVGEGNAQLVAIF 160
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 39.7 bits (93), Expect = 7e-04
Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 30/200 (15%)
Query: 192 SVIVSEGQTVYLYCYANG---------FP--APTISWRRDNSAALSTG------GSIYRG 234
S S GQ++ + C AP + N +G GS G
Sbjct: 9 SASGSPGQSITISCTGTSNNFVSWYQQHAGKAPKLVIYDVNK--RPSGVPDRFSGSK-SG 65
Query: 235 N--ILKIPNITKTDRGTYYCVAQNG-----VGRGMKRNIAVEVEFAPVITINRPRQGQAL 287
N L + + D YYC + G G G K + + + AP +T+ P +
Sbjct: 66 NTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQ 125
Query: 288 QYDAILECHVEAYPP--PAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERR 344
A L C + + P + W D + + ++++++ +S L + + +
Sbjct: 126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWK 185
Query: 345 QFGQYACKAANKYGSAQKEI 364
Y+C+ ++ + +K +
Sbjct: 186 SHRSYSCQVTHEGSTVEKTV 205
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 39.8 bits (93), Expect = 7e-04
Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 43/218 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-------STGGSIYRGNI------ 236
VI G +V + C + F A T+ W R+ +L + Y +
Sbjct: 9 SWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 68
Query: 237 ----------LKIPNITKTDRGTYYCVAQN---------GVGRGMKRNIAVEVEFAPVIT 277
L + + D Y C A+ G G + ++ F P +
Sbjct: 69 INHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVA 128
Query: 278 INRPRQGQALQYD-AILECHVEAYPPPAI--VWIKDGVQIMNNQHYSVSHFATSDEFSDT 334
+ P + + A L C + P + W +G ++ + +D+
Sbjct: 129 VFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDS 188
Query: 335 ------SLRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + + C+ S E
Sbjct: 189 RYALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 226
Score = 33.7 bits (77), Expect = 0.071
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 16/156 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQ----LTTDPETST 143
+ ++C + W + + + + S GS ++ + L +
Sbjct: 17 TSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTL 76
Query: 144 YILSIKEIQETDAGIYKCEVIISLNN---------KVSAEVELIVRRPPIISDNSTRSVI 194
L++ D+ Y C S + +++ +L PP ++
Sbjct: 77 STLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 136
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG 228
+S Q L C A GF P +SW + + +G
Sbjct: 137 ISHTQKATLVCLATGFYPDHVELSWWVNGK-EVHSG 171
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 39.6 bits (92), Expect = 7e-04
Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 37/211 (17%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI------- 236
R +I +G L C + W ++ L +G +
Sbjct: 10 RHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQ 68
Query: 237 --------LKIPNITKTDRGTYYCVAQNG--------VGRGMKRNIAVEVEFAPVITINR 280
+ + + D Y+C + G + + P +++
Sbjct: 69 QFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE 128
Query: 281 PRQGQ-ALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSD-EFSDTS- 335
P + + A + A L C + P + W +G ++ + + S+ +S +S
Sbjct: 129 PSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSR 188
Query: 336 LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + C+ S + +
Sbjct: 189 LRVSATFWHNPRNHFRCQVQFHGLSEEDKWP 219
Score = 34.2 bits (78), Expect = 0.048
Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 15/149 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD---SRFQLTTDPETSTY 144
+ L C + V+W + K+++ L SRF +
Sbjct: 18 GRSVLTCI-PISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFS-VQQFDDYHS 75
Query: 145 ILSIKEIQETDAGIYKCEVIISLNN--------KVSAEVELIVRRPPIISDNSTRSVIVS 196
+++ ++ D+ +Y C + + +++ +L PP +S ++
Sbjct: 76 EMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIA 135
Query: 197 EGQTVYLYCYANGF--PAPTISWRRDNSA 223
Q L C A GF +SW +
Sbjct: 136 NKQKATLVCLARGFFPDHVELSWWVNGKE 164
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 39.6 bits (92), Expect = 0.001
Identities = 35/215 (16%), Positives = 61/215 (28%), Gaps = 41/215 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI------- 236
+ + EGQ V L C N + W R+D L +G+I
Sbjct: 11 KYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVS 69
Query: 237 --------LKIPNITKTDRGTYYC--------VAQNGVGRGMKRNIAVEVEFAPVITINR 280
L + + K Y C G G + ++ F P + +
Sbjct: 70 REKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFE 129
Query: 281 PRQGQALQYD-AILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS-- 335
P + + A L C + P + W +G ++ + +D+
Sbjct: 130 PSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS 189
Query: 336 ----LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + + C+ S E
Sbjct: 190 LSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 224
Score = 33.4 bits (76), Expect = 0.090
Identities = 24/149 (16%), Positives = 47/149 (31%), Gaps = 15/149 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHD---SRFQLTTDPETSTY 144
Q L C Q + + W + D + + + S + + + + ++
Sbjct: 19 QNVTLSCE-QNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYS-VSREKKESF 76
Query: 145 ILSIKEIQETDAGIYKCEVIISLNNKVSA--------EVELIVRRPPIISDNSTRSVIVS 196
L++ Q+ Y C + + +L PP ++ +S
Sbjct: 77 PLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEIS 136
Query: 197 EGQTVYLYCYANGF-PAP-TISWRRDNSA 223
Q L C A GF P +SW +
Sbjct: 137 HTQKATLVCLATGFYPDHVELSWWVNGKE 165
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGN-ILK 238
P + V ++ YL C A T SWR + S N IL
Sbjct: 497 CPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHA-TYSWRHKENVEQSCEPGHQSPNCILF 555
Query: 239 IPNITKTDRGTYYCVAQNG 257
I N+T G Y+C AQ G
Sbjct: 556 IENLTAQQYGHYFCEAQEG 574
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 37.0 bits (86), Expect = 0.002
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 88 QTADLKCSV-QYADDYPVIWMKMDTAKKMEPLPISMSGSL-IIHDSRFQLTTDPETSTYI 145
A CS+ +++D + W ++ + + E +G + D+RFQ+ P +
Sbjct: 15 ANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFH 74
Query: 146 LSIKEIQETDAGIYKCEVI 164
++I + + D+GIY C I
Sbjct: 75 MNILDTRRNDSGIYLCGAI 93
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 38.5 bits (89), Expect = 0.002
Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 1/144 (0%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L+C+ D + W K DT K + L + + + R+ T D + L
Sbjct: 17 ENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDAKHSTLH 76
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
I D Y C V + + +LIV + + + Q C
Sbjct: 77 ITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPRSQDS-TLCLF 135
Query: 208 NGFPAPTISWRRDNSAALSTGGSI 231
F + + S T +
Sbjct: 136 TDFDSQINVPKTMESGTFITDKCV 159
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 39.2 bits (91), Expect = 0.002
Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 10/80 (12%)
Query: 191 RSVIVSEGQTVYLYCYAN-------GFPAPTISWRRDNSAALSTGGSI--YRGNILKIPN 241
S +V C A I W+ ++ +I + + +
Sbjct: 11 ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTD 70
Query: 242 ITKTDRGTYYCVAQNGVGRG 261
I + C
Sbjct: 71 IASLN-IQLTCNILTFGQLE 89
Score = 30.7 bits (69), Expect = 0.84
Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 31/138 (22%)
Query: 141 TSTYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQT 200
+ ++ +I + + + + + +I PP +
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP--------------EKP 106
Query: 201 VYLYCYANGFPAPTISWRRDNSAALSTGGSI-YRGNILKIPNITKTDRG----------- 248
L C N W L T ++ K +
Sbjct: 107 KNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTV 166
Query: 249 -----TYYCVAQNGVGRG 261
+ A+N +G+
Sbjct: 167 YFVNIEVWVEAENALGKV 184
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 15/79 (18%)
Query: 290 DAILECHVE-------AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
+ C ++ IVW + I + Y++ + S T
Sbjct: 20 NFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIIN-------RTASSVTFTDI 71
Query: 343 RRQFGQYACKAANKYGSAQ 361
Q C Q
Sbjct: 72 ASLNIQLTCNILTFGQLEQ 90
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 37.7 bits (87), Expect = 0.003
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 4/147 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
A L C+ + W + + + + L +S+ + RF + + L
Sbjct: 18 GMASLNCTSSDRNFQYFWWYRQHSGEGPKAL-MSIFSDGDKKEGRFTAHLNKASLHVSLH 76
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSA---EVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I++ Q +D+ +Y C N + P I + + + +
Sbjct: 77 IRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSKSSDKSV 136
Query: 205 CYANGFPAPTISWRRDNSAALSTGGSI 231
C F + T + +S T +
Sbjct: 137 CLFTDFDSQTNVSQSKDSDVYITDKCV 163
Score = 31.9 bits (72), Expect = 0.26
Identities = 29/176 (16%), Positives = 53/176 (30%), Gaps = 35/176 (19%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI-------- 236
S+ V EG L C ++ W R+ + + G G
Sbjct: 11 SLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKAS 70
Query: 237 ----LKIPNITKTDRGTYYCV--AQNGVGRGMKRNIAVEVEFAPVITINRPR--QGQALQ 288
L I + +D Y+C QN +G+ + V P I P Q + +
Sbjct: 71 LHVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSK 130
Query: 289 YDAILECHVEAYPP-PAIVWIKDG-----------VQIMNNQHYSVSHFATSDEFS 332
C + + KD ++ M+ + S ++ +F+
Sbjct: 131 SSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFA 186
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 38.1 bits (88), Expect = 0.003
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 17/151 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLI----IHDSRFQLTTDPETST 143
Q A ++C + V W + + + + L + ++ + + RF P S
Sbjct: 43 QKAKMRCIPEKGHPV-VFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFS-AECPSNSP 100
Query: 144 YILSIKEIQETDAGIYKC---------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVI 194
L I+ + D+ +Y C ++ +L PP ++
Sbjct: 101 CSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAE 160
Query: 195 VSEGQTVYLYCYANGFPAP--TISWRRDNSA 223
+S Q L C A GF +SW +
Sbjct: 161 ISHTQKATLVCLATGFYPDHVELSWWVNGKE 191
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 37.3 bits (86), Expect = 0.004
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 3/145 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ + C+ + W + + + L ++G + R L
Sbjct: 17 ENLTVYCNSSSVFSS-LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLH 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKV-SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCY 206
I Q D G+Y C S N + +L V +P I + + + + C
Sbjct: 76 ITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSV-KPNIQNPDPAVYQLRDSKSSDKSVCL 134
Query: 207 ANGFPAPTISWRRDNSAALSTGGSI 231
F + T + +S T ++
Sbjct: 135 FTDFDSQTNVSQSKDSDVYITDKTV 159
Score = 29.2 bits (65), Expect = 1.6
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 34/157 (21%)
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISW-------------------RRDNSAALSTG 228
S + + + EG+ + +YC ++ F ++ W L+
Sbjct: 7 SPQFLSIQEGENLTVYCNSSSVFS--SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQ 64
Query: 229 GSIYRGNI-LKIPNITKTDRGTYYCVAQNGV-----GRGMKRNIAVEVEFAPVITINRPR 282
R + L I D G Y C G+G K ++ ++ + + R
Sbjct: 65 FGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDP-AVYQLR 123
Query: 283 QGQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNN 317
++ C + V V I +
Sbjct: 124 DSKS---SDKSVCLFTDFDSQTNVSQSKDSDVYITDK 157
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 37.3 bits (86), Expect = 0.004
Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 6/146 (4%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPL-PISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ L+C Y+ + W + ++ L ++ + F+ S++ L
Sbjct: 25 ASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHL 84
Query: 147 SIKEIQETDAGIYKCEVIISLNN---KVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
+ +D+ +Y C V +L V P I + + + +
Sbjct: 85 RKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTV-SPNIQNPDPAVYQLRDSKSSDKS 143
Query: 204 YCYANGF-PAPTISWRRDNSAALSTG 228
C F +S +D+ ++
Sbjct: 144 VCLFTDFDSQTNVSQSKDSDVYITDK 169
Score = 33.9 bits (77), Expect = 0.054
Identities = 23/181 (12%), Positives = 53/181 (29%), Gaps = 44/181 (24%)
Query: 192 SVIVSEGQTVYLYC---------------YANGFPAPTISWRRDNSAALSTGGSIYRGN- 235
V VSEG ++ L C Y + + + G +
Sbjct: 18 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSK 77
Query: 236 -----ILKIPNITKTDRGTYYCVAQNG-------VGRGMKRNIAVEVEFAPVITINRPRQ 283
L+ ++ +D Y+C G+G K ++ ++ + + R
Sbjct: 78 SDSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPDP-AVYQLRD 136
Query: 284 GQALQYDAILECHVEAYPP-PAIVWIKDG-----------VQIMNNQHYSVSHFATSDEF 331
++ C + + KD ++ M+ + S ++ +F
Sbjct: 137 SKS---SDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDF 193
Query: 332 S 332
+
Sbjct: 194 A 194
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 36.5 bits (84), Expect = 0.006
Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 6/146 (4%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ A + CS + + + + W + ++ + + L + S H R ++T D + L
Sbjct: 17 ENATMNCSYKTSINN-LQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLL 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I + D Y C + L V I + + + +
Sbjct: 76 ITASRAADTASYFCATDTTSGTYKYIFGTGTRLKV-LANIQNPDPAVYQLRDSKSSDKSV 134
Query: 205 CYANGF-PAPTISWRRDNSAALSTGG 229
C F +S +D+ ++
Sbjct: 135 CLFTDFDSQTNVSQSKDSDVYITDKT 160
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 35.3 bits (81), Expect = 0.007
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 104 VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
+ W + + P + + + + Y L I +++ DAG YK ++
Sbjct: 32 IAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADI 91
Query: 164 II-SLNNKVSAEVELIV 179
+ + L +
Sbjct: 92 NTQADPYTTTKRYNLQI 108
Score = 28.0 bits (62), Expect = 2.5
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 21/89 (23%)
Query: 185 ISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAA------------LSTGGSI 231
+ D+ +V G++V I+W S A ++
Sbjct: 1 MKDSEIFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRN 60
Query: 232 YRGNI--------LKIPNITKTDRGTYYC 252
Y I L I ++ D G Y
Sbjct: 61 YYERIHALGPNYNLVISDLRMEDAGDYKA 89
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 36.1 bits (83), Expect = 0.009
Identities = 24/145 (16%), Positives = 45/145 (31%), Gaps = 4/145 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L CS + Y + W + D K + L + S R + D + L
Sbjct: 16 ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLY 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSA---EVELIVRRPPIISDNSTRSVIVSEGQTVYLY 204
I Q D+ Y C V + ++ P I + + + +
Sbjct: 76 IAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRRSKSSDKSV 135
Query: 205 CYANGF-PAPTISWRRDNSAALSTG 228
C F +S +D+ ++
Sbjct: 136 CLFTDFDSQTNVSQSKDSDVYITDK 160
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 36.2 bits (83), Expect = 0.009
Identities = 20/141 (14%), Positives = 41/141 (29%), Gaps = 7/141 (4%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
L C+ Q + W + + L S + + F T +S++ L
Sbjct: 17 LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQ 76
Query: 148 IKEIQETDAGIYKCEVIISLNNKV----SAEVELIVRRPPIISDNSTRSVIVSEGQTVYL 203
Q +D+ +Y C + ++ ++ L V P I + +
Sbjct: 77 KSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSV-VPNIQNPEPAVYQLKDPRSQDST 135
Query: 204 YCYANGFPAP--TISWRRDNS 222
C F + +
Sbjct: 136 LCLFTDFDSQINVPKTMESGT 156
Score = 30.8 bits (69), Expect = 0.46
Identities = 27/177 (15%), Positives = 46/177 (25%), Gaps = 36/177 (20%)
Query: 192 SVIVSEGQTVYLYC---------------YANGFPAPTISWRRDNSAALSTGGSIYRGN- 235
V ++EG V L C + N P + DN G
Sbjct: 10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKS 69
Query: 236 ----ILKIPNITKTDRGTYYCVAQNGVGRGMKRNI--AVEVEFAPVITINRPR--QGQAL 287
L+ + +D YYC K + P I P Q +
Sbjct: 70 SSSFHLQKSSAQLSDSALYYCALFLASSSFSKLVFGQGTSLSVVPNIQNPEPAVYQLKDP 129
Query: 288 QYDAILECHVEAYPPPAIV--WIKDGVQI----------MNNQHYSVSHFATSDEFS 332
+ C + V ++ G I M+++ ++ F+
Sbjct: 130 RSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFT 186
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 34.2 bits (79), Expect = 0.010
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 178 IVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
+++R P I S G++ +L CY +GF P+ + ++
Sbjct: 1 MIQRTPKIQVYSRHPA--ENGKSNFLNCYVSGFHPSDIEVDLLKNG 44
Score = 28.8 bits (65), Expect = 0.95
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQI 314
P I + R L C+V + P I +K+G +I
Sbjct: 5 TPKIQV-YSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI 47
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 35.4 bits (81), Expect = 0.011
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 88 QTADLKCSVQYADDYPVIW--MKMDTAKKMEPLPI--SMSGSLIIHDSRFQLTTDPET-- 141
Q DL C V + W + + + S + I D + +
Sbjct: 25 QKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR 84
Query: 142 ---STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ Y+L++ + + + G Y C VI + S+ V ++ +
Sbjct: 85 DTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNS 129
Score = 31.5 bits (71), Expect = 0.28
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 29/118 (24%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISWRR----------------DNSAALSTGGSIY 232
+ + GQ V L C G + SW +S T
Sbjct: 15 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL 74
Query: 233 RGN-------------ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVIT 277
+ +L + +K + G Y+C + + V + T
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTT 132
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 36.2 bits (84), Expect = 0.011
Identities = 29/217 (13%), Positives = 64/217 (29%), Gaps = 46/217 (21%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPL-PISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ L+C Y+ + W + + L ++ + F+ S++ L
Sbjct: 19 ASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHL 78
Query: 147 SIKEIQETDAGIYKC-----------------EVIISLNNKVSAEVELIVRRPPIISDN- 188
+ +D+ +Y C ++ +S S
Sbjct: 79 RKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEA 138
Query: 189 ----STRSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI- 236
S R+ + G+ V L C + W R+D L G++ G++
Sbjct: 139 AVTQSPRNKVTVTGENVTLSCRQTN-SHNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVP 197
Query: 237 --------------LKIPNITKTDRGTYYCVAQNGVG 259
L + + + + Y+C + + G
Sbjct: 198 DGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 35.8 bits (82), Expect = 0.012
Identities = 18/74 (24%), Positives = 29/74 (39%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L+C+ + + W K DT + L I + R+ T D +T L
Sbjct: 19 KNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLH 78
Query: 148 IKEIQETDAGIYKC 161
I Q +D+ Y C
Sbjct: 79 ITASQLSDSASYIC 92
Score = 31.9 bits (72), Expect = 0.26
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 20/93 (21%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL-------STGGSIYRGNI------ 236
+S+I+ EG+ L C P + W ++D + + G
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA 70
Query: 237 ------LKIPNITKTDRGTYYCVAQNGVGRGMK 263
L I +D +Y CV + +
Sbjct: 71 DTKQSSLHITASQLSDSASYICVVSDRGSTLGR 103
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 36.2 bits (83), Expect = 0.012
Identities = 32/151 (21%), Positives = 52/151 (34%), Gaps = 17/151 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS----RFQLTTDPETST 143
Q L C Y W K ++ME L +G ++ +F P+ S
Sbjct: 18 QMVTLNCDPVSNHLY-FYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFS-VERPDGSY 75
Query: 144 YILSIKEIQETDAGIYKC---------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVI 194
+ L I+ D+ +Y C E +++ +L PP ++
Sbjct: 76 FTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAE 135
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDNSA 223
+S Q L C A GF P +SW +
Sbjct: 136 ISHTQKATLVCLATGFYPDHVELSWWVNGKE 166
Score = 33.8 bits (77), Expect = 0.059
Identities = 33/217 (15%), Positives = 58/217 (26%), Gaps = 43/217 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISW-------------------RRDNSAALSTGGSI 231
I+ GQ V L C W + S S+
Sbjct: 10 SHQIIDMGQMVTLNCDPVS-NHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV 68
Query: 232 YRGN----ILKIPNITKTDRGTYYCVAQNG---------VGRGMKRNIAVEVEFAPVITI 278
R + LKI D Y+C + G + ++ F P + +
Sbjct: 69 ERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAV 128
Query: 279 NRPRQGQ-ALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS 335
P + + + A L C + P + W +G ++ + +D+
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSR 188
Query: 336 ------LRVITIE-RRQFGQYACKAANKYGSAQKEIE 365
LRV + + C+ S E
Sbjct: 189 YALSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWT 225
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 35.6 bits (82), Expect = 0.013
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 4/138 (2%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+TA L CS + + W + L S D RF + + + L
Sbjct: 16 ETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLH 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYA 207
I + Q D+ Y C + +L+V +P I + + C
Sbjct: 76 IADSQPGDSATYFCAASDN-RIFFGDGTQLVV-KPNIQNPEPAVYQLKDPRSQDSTLCLF 133
Query: 208 NGFP--APTISWRRDNSA 223
F +
Sbjct: 134 TDFDSQINVPKTMESGTF 151
Score = 29.8 bits (67), Expect = 0.89
Identities = 28/173 (16%), Positives = 51/173 (29%), Gaps = 40/173 (23%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW--------------------RRDNSAALSTGGSI 231
S+ V EG+T L C W ++++
Sbjct: 9 SLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKR 68
Query: 232 YRGNILKIPNITKTDRGTYYCVAQNGV---GRG----MKRNIAVEVEFAPVITINRPRQG 284
+ L I + D TY+C A + G G +K NI P + + +
Sbjct: 69 EKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQ-----NPEPAVYQLKDP 123
Query: 285 QALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQHYSVSHFATSDEFSDTS 335
++ C + V ++ G I + +V D S+ +
Sbjct: 124 RS---QDSTLCLFTDFDSQINVPKTMESGTFITDK---TVLDMKAMDSKSNGA 170
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 34.5 bits (78), Expect = 0.017
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 91 DLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPE----TSTYI 145
++C V+Y P V W K + PL + QL T E ++
Sbjct: 33 KIECPVKYCVHRPNVTWCKHN-GTIWVPL-----------EVGPQLYTSWEENRSVPVFV 80
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
L K I +D G Y C + S V + VR
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR 115
Score = 27.1 bits (59), Expect = 5.5
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 15/99 (15%)
Query: 185 ISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRR---DNSAALSTGGSIYRGN----- 235
I NS S G+ + C P ++W + L G +Y
Sbjct: 18 IKRNSKHSAWT--GELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRS 75
Query: 236 ----ILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
+L I +D G+Y C ++ + V
Sbjct: 76 VPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 34.9 bits (80), Expect = 0.021
Identities = 23/192 (11%), Positives = 41/192 (21%), Gaps = 37/192 (19%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW-------------RRDNSAALSTGGSIYRGNI-- 236
++ + EG L C ++ W + + +
Sbjct: 10 ALSLHEGTDSALRCNFT-TTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKER 68
Query: 237 ----LKIPNITKTDRGTYYCVAQNGVGRGMKRNI--------AVEVEFAPVITINRPRQG 284
L I + D GTY+C A +V P
Sbjct: 69 RYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSV 128
Query: 285 QALQYDAILECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIE 342
++ + C V+ + P I + A S V +
Sbjct: 129 FIMKNGTNVACLVKDFYPKEVTISLRSSKKIV-------EFDPAIVISPSGKYSAVKLGQ 181
Query: 343 RRQFGQYACKAA 354
C
Sbjct: 182 YGDSNSVTCSVQ 193
Score = 33.8 bits (77), Expect = 0.063
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 15/146 (10%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI-L 146
+ L+C+ V W + ++ + L SG+ + R + D + Y L
Sbjct: 17 TDSALRCNFTTTMRS-VQWFRQNSRGSLISLFYLASGTK--ENGRLKSAFDSKERRYSTL 73
Query: 147 SIKEIQETDAGIYKCEVIISL--------NNKVSAEVELIVRRPPIISDNSTRSVIVSEG 198
I++ Q D+G Y C +K+ V P + SV + +
Sbjct: 74 HIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFIMKN 133
Query: 199 QTVYLYCYANGF-PAP-TISWRRDNS 222
T + C F P TIS R
Sbjct: 134 GTN-VACLVKDFYPKEVTISLRSSKK 158
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 34.7 bits (79), Expect = 0.025
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 7/147 (4%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L+C+ V W + ++ + L SG+ + R + D + L
Sbjct: 19 TGSALRCNFTTTMRA-VQWFRKNSRGSLINLFYLASGTK--ENGRLKSAFDSKERYSTLH 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKV--SAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC 205
I++ Q D+G Y C S NKV L V P I + + + + C
Sbjct: 76 IRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQV-LPNIQNPDPAVYQLRDSKSSDKSVC 134
Query: 206 YANGF-PAPTISWRRDNSAALSTGGSI 231
F +S +D+ ++ +
Sbjct: 135 LFTDFDSQTNVSQSKDSDVYITDKCVL 161
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 33.8 bits (78), Expect = 0.026
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPT--ISWRRDNSA-----ALSTGG--SIYRGNI- 236
D + + + G+++ + C W R ++S GG
Sbjct: 4 DQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGS 63
Query: 237 ----LKIPNITKTDRGTYYCVAQNGVGRG 261
L+I ++T D GTY C ++ G
Sbjct: 64 KSFSLRINDLTVKDSGTYRCKPESRYGSY 92
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 33.5 bits (77), Expect = 0.027
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 16/86 (18%)
Query: 191 RSVIVSEGQTVYLYCYANG--FPAPTISWRR-----DNSAALSTGGSIYRGNI------- 236
RSV G+++ + C + + W R N ++S GG Y +
Sbjct: 8 RSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGR-YVETVNSGSKSF 66
Query: 237 -LKIPNITKTDRGTYYCVAQNGVGRG 261
L+I ++T D GTY C G
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGGYC 92
Score = 27.3 bits (61), Expect = 3.5
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 88 QTADLKCSVQYA--DDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYI 145
++ + C ++ A W + + + E IS G R+ T + + ++
Sbjct: 16 ESLTINCVLRDASYALGSTCWYRKKSGEGNE-ESISKGG-------RYVETVNSGSKSFS 67
Query: 146 LSIKEIQETDAGIYKCEV 163
L I ++ D G Y+C +
Sbjct: 68 LRINDLTVEDGGTYRCGL 85
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 34.9 bits (79), Expect = 0.031
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYR-------GNILKIPNITK 244
+V V+ GQ C A G + + N TK
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 245 TDRGTYYCVAQNGVGRG 261
D G Y C+ + G G
Sbjct: 233 RDAGKYRCMIRTEGGVG 249
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 34.2 bits (79), Expect = 0.036
Identities = 24/140 (17%), Positives = 48/140 (34%), Gaps = 17/140 (12%)
Query: 237 LKIPNITKTDRGTYYCVAQNGV----GRGMKRNIAVEVEFAPVITINRPRQGQALQYDAI 292
L I D Y+C + G G K + + + +P +T+ P + A
Sbjct: 75 LTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKAT 134
Query: 293 LECHVEAYPPPA--IVWIKDGVQIMNNQHYSVSHFATSDEFSDT------SLRVITIERR 344
L C + + P + W DG + + + S+ L +
Sbjct: 135 LVCTITDFYPGVVTVDWKVDGTPVTAGMETT-----QPSKQSNNKYMASSYLTLTARAWE 189
Query: 345 QFGQYACKAANKYGSAQKEI 364
+ Y+C+ ++ S+ K +
Sbjct: 190 RHSSYSCQVTHEGHSSNKTL 209
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 32.7 bits (75), Expect = 0.036
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
+++ P I S G+ L CY F P I ++
Sbjct: 1 IQKTPQIQVYSRHPP--ENGKPNILNCYVTQFHPPHIEIQMLKNG 43
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQI 314
P I + R IL C+V + PP I +K+G +I
Sbjct: 4 TPQIQV-YSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKI 46
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 33.5 bits (77), Expect = 0.044
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 22/92 (23%)
Query: 192 SVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGGSIYRGNI- 236
S+ V E TV + C Y + + W R+D+ + Y N
Sbjct: 9 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQ 68
Query: 237 -------LKIPNITKTDRGTYYCVAQNGVGRG 261
L I D Y+C + G
Sbjct: 69 KPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
Score = 30.0 bits (68), Expect = 0.60
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPL-PISMSGSLIIHDSRFQLTTDPETSTYI 145
T + C + D + W K + ++ L + L S+
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75
Query: 146 LSIKEIQETDAGIYKC 161
L I Q D+ +Y C
Sbjct: 76 LIITATQIEDSAVYFC 91
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 32.7 bits (75), Expect = 0.052
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 22/95 (23%)
Query: 189 STRSVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGGSIYRG 234
+ S+ V E TV + C Y + + W R+D+ + Y
Sbjct: 6 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSL 65
Query: 235 NI--------LKIPNITKTDRGTYYCVAQNGVGRG 261
N L I D Y+C + G
Sbjct: 66 NFQKPKSSIGLIITATQIEDSAVYFCAMRGDYGGS 100
Score = 29.2 bits (66), Expect = 0.93
Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPL-PISMSGSLIIHDSRFQLTTDPETSTYI 145
T + C + D + W K + ++ L + L S+
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75
Query: 146 LSIKEIQETDAGIYKC 161
L I Q D+ +Y C
Sbjct: 76 LIITATQIEDSAVYFC 91
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.9 bits (74), Expect = 0.056
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 91 DLKCSVQYADDYP-VIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILSIK 149
+L+C V+Y + P V W K++ L D + + S +IL +
Sbjct: 30 ELECPVKYCANRPHVTWCKLN-GTTCVKLE----------DRQTSWKEEKNISFFILHFE 78
Query: 150 EIQETDAGIYKCEVIISLNNKVSAEVELIVR 180
+ D G Y+C N S L V
Sbjct: 79 PVLPNDNGSYRCSANFQSNLIESHSTTLYVT 109
Score = 30.2 bits (67), Expect = 0.44
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 18/115 (15%)
Query: 166 SLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYC-YANGFPAPTISWRRDNSAA 224
+++ K S +V+L ++R S S+ G L C P ++W + N
Sbjct: 2 NIHGKESCDVQLYIKR------QSEHSI--LAGDPFELECPVKYCANRPHVTWCKLNGTT 53
Query: 225 LSTGGSIYRG---------NILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEV 270
IL + D G+Y C A + + V
Sbjct: 54 CVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 34.2 bits (79), Expect = 0.067
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 43/162 (26%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTGGSIYRGNIL 237
+R P I S G++ +L CY +GF P+ + ++ ++
Sbjct: 5 QRTPKIQVYSRHPA--ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKV----EHSDLS 58
Query: 238 KIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYDAILECHV 297
+ D ++Y + EF P + +Y C V
Sbjct: 59 --FS---KD-WSFY--------------LLYYTEFTP---------TEKDEYA----CRV 85
Query: 298 E--AYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSDTSLR 337
P IV + + +++D +
Sbjct: 86 NHVTLSQPKIVKWDRDMGGGGSGGSGSGGGSSADASQEHVSF 127
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 33.5 bits (77), Expect = 0.079
Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 52/212 (24%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW-------------RRDNSAA------LSTGGSIY 232
V V+ GQ + C + + W DN S S
Sbjct: 9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNS-- 66
Query: 233 RGN--ILKIPNITKTDRGTYYCVAQNG------VGRGMKRNIAVEVEFAPVITINRPRQG 284
GN L I D YYC + +G G G K + + AP +T+ P
Sbjct: 67 -GNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSE 125
Query: 285 QALQYDAILECHVEAYPPPA--IVWIKDGVQIMN----------NQHYSVSHFATSDEFS 332
+ A L C + + P + W DG I + Y +
Sbjct: 126 ELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMAT--------- 176
Query: 333 DTSLRVITIERRQFGQYACKAANKYGSAQKEI 364
+ L + + + CK + + +K +
Sbjct: 177 -SYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 33.3 bits (76), Expect = 0.086
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ C+ Q + + W + + L + RF L
Sbjct: 15 AIVQINCTYQTSGFNGLFWYQQHAGEAPTFL-SYNVLDGLEEKGRFSSFLSRSKGYSYLL 73
Query: 148 IKEIQETDAGIYKC 161
+KE+Q D+ Y C
Sbjct: 74 LKELQMKDSASYLC 87
Score = 29.1 bits (65), Expect = 1.6
Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 23/92 (25%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW-------------RRDNSAALSTGGSIYRGNI-- 236
+ +EG V + C + W G + +
Sbjct: 8 EMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGR--FSSFLSR 65
Query: 237 ------LKIPNITKTDRGTYYCVAQNGVGRGM 262
L + + D +Y C Q G +
Sbjct: 66 SKGYSYLLLKELQMKDSASYLCAVQASGGSYI 97
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 32.5 bits (73), Expect = 0.087
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 88 QTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPI-----SMSGSLIIHDSRFQL---- 135
T +L CS Q + W+K + + + G + ++
Sbjct: 20 GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 79
Query: 136 ----TTDPETSTYILSIKEIQETDAGIYKCEVI 164
+ + L + + D G Y C+V
Sbjct: 80 FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVA 112
Score = 32.1 bits (72), Expect = 0.11
Identities = 23/106 (21%), Positives = 30/106 (28%), Gaps = 36/106 (33%)
Query: 193 VIVSEGQTVYLYC---YANGFPAPTISWRRDNSAALSTGGSI------------------ 231
V V G TV L C AN P ISW + S ST
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 73
Query: 232 ------YRGNI---------LKIPNITKTDRGTYYCVAQNGVGRGM 262
+ G L++ ++ D G Y+C R
Sbjct: 74 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 33.1 bits (75), Expect = 0.092
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 6/149 (4%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPL-PISMSGSLIIHDSRFQLTTDPETSTYI 145
+ L C + D + W K + ++ L + R+ TS++
Sbjct: 19 EDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFN 78
Query: 146 LSIKEIQETDAGIYKCEVIISLNNKV---SAEVELIVRRPPIISDNSTRSVIVSEGQTVY 202
+I Q D+ +Y C + N L V P I + + + +
Sbjct: 79 FTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQV-FPNIQNPDPAVYQLRDSKSSDK 137
Query: 203 LYCYANGFPAPTISWRRDNSAALSTGGSI 231
C F + T + +S T +
Sbjct: 138 SVCLFTDFDSQTNVSQSKDSDVYITDKCV 166
Score = 29.7 bits (66), Expect = 1.2
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 22/92 (23%)
Query: 192 SVIVSEGQTVYLYC-YANGFPAPTISW-------------RRDNSAALSTGGSIYRGNI- 236
+ V E + V L C Y + W RR++ + Y N
Sbjct: 12 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQ 71
Query: 237 -------LKIPNITKTDRGTYYCVAQNGVGRG 261
I D Y+C
Sbjct: 72 KSTSSFNFTITASQVVDSAVYFCALSGFYNTD 103
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 33.1 bits (75), Expect = 0.11
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 17/150 (11%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDS-----RFQLTTDPETS 142
+ +L+C + W + + E L I G+ DS RF PE S
Sbjct: 42 KYVELRCDPISGHTA-LYWYRQSLGQGPEFL-IYFQGTGAADDSGLPNDRFF-AVRPEGS 98
Query: 143 TYILSIKEIQETDAGIYKC-------EVIISLNNKVSAEVELIVRRPPIISDNSTRSVIV 195
L I+ + D+ +Y C +++ +L PP ++ +
Sbjct: 99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEI 158
Query: 196 SEGQTVYLYCYANGF--PAPTISWRRDNSA 223
S Q L C A GF +SW +
Sbjct: 159 SHTQKATLVCLATGFYPDHVELSWWVNGKE 188
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 33.5 bits (77), Expect = 0.12
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTGGSIYRGNI 236
++R P I S G++ +L CY +GF P+ + ++ ++
Sbjct: 1 IQRTPKIQVYSRHPA--ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVE----HSDL 54
Query: 237 LKIPNITKTDRGTYY 251
+ D ++Y
Sbjct: 55 S--FS---KD-WSFY 63
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 31.7 bits (72), Expect = 0.12
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
++ P I S G+ L CY F P I ++
Sbjct: 22 QKTPQIQVYSRHPP--ENGKPNILNCYVTQFHPPHIEIQMLKNG 63
Score = 29.3 bits (66), Expect = 0.75
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 262 MKRNIAVEVEF------------APVITINRPRQGQALQYDAILECHVEAYPPPAI--VW 307
M R++ + P I + R IL C+V + PP I
Sbjct: 1 MARSVTLVFLVLVSLTGLYAIQKTPQIQV-YSRHPPENGKPNILNCYVTQFHPPHIEIQM 59
Query: 308 IKDGVQI 314
+K+G +I
Sbjct: 60 LKNGKKI 66
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 31.1 bits (71), Expect = 0.13
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDN 221
S G L C+A GF P +I+ +D
Sbjct: 15 ASAGTKNVLNCFAAGFHPPKISITLMKDG 43
Score = 26.9 bits (60), Expect = 3.9
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQI 314
P + + R + +L C + PP I +KDGV +
Sbjct: 4 TPKVQV-YSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPM 46
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 32.3 bits (74), Expect = 0.16
Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 41/211 (19%)
Query: 192 SVIVSEGQTVYLYCYANG-FPAPTISWRRDNS-------AALSTGGSIYRGN-------- 235
S S G + L C N TI W + L GS G+
Sbjct: 9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSG 68
Query: 236 -------ILKIPNITKTDRGTYYCVAQNGV--------GRGMKRNIAVEVEFAPVITINR 280
L I NI D Y C + + G G K + + + P +T+
Sbjct: 69 SSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP 128
Query: 281 PRQGQALQYDAILECHVEA-YPPPAIV-WIKDGVQIMNNQHYSVSHFAT---SDEFSDTS 335
P + + A L C + P V W +G I V ++F +S
Sbjct: 129 PSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQG----VDTSNPTKEGNKFMASS 184
Query: 336 -LRVITIERRQFGQYACKAANKYGSAQKEIE 365
L + + + R + C+ ++ + +K +
Sbjct: 185 FLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS 215
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.8 bits (74), Expect = 0.17
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 205 CYANGFPAPT---ISWRRDNSAALSTGGSIYRGN----ILKIPNITKTDRGTYYCVAQNG 257
C A+G+P PT ++ + + L + + I I I D G + C
Sbjct: 348 CKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTV 407
Query: 258 VGR-GMKRNIAVEV 270
G NI+V+V
Sbjct: 408 AGMVEKPFNISVKV 421
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 30.8 bits (70), Expect = 0.17
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
P I S G+ L CY +GF P +I ++
Sbjct: 2 VSSPKIQVYSHYPG--EYGKENTLICYVSGFHPPDISIELLKNG 43
Score = 29.6 bits (67), Expect = 0.44
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 273 APVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQI 314
+P I + + L C+V + PP I +K+G I
Sbjct: 4 SPKIQV-YSHYPGEYGKENTLICYVSGFHPPDISIELLKNGEVI 46
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 31.4 bits (71), Expect = 0.17
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 88 QTADLKCSVQYADDYPVIWM--KMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS--- 142
Q DL C V + W+ + + M+ S +L + S
Sbjct: 20 QKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMR 79
Query: 143 ----TYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
Y+L++ + + + G Y C VI + S+ V ++ +
Sbjct: 80 DTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVSS 124
Score = 31.0 bits (70), Expect = 0.23
Identities = 15/98 (15%), Positives = 25/98 (25%), Gaps = 35/98 (35%)
Query: 192 SVIVSEGQTVYLYCYANGFPAPTISW--------------------------------RR 219
+ GQ V L C G + SW
Sbjct: 13 KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSS 72
Query: 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNG 257
+A+ + Y L + +K + G Y+C +
Sbjct: 73 KLFSAMRDTNNKYV---LTLNKFSKENEGYYFCSVISN 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.18
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 283 QGQALQYDAILECHVEAYPP---PAIVWIKDGVQ 313
+ QAL+ L+ ++ Y PA+ IK ++
Sbjct: 18 EKQALKK---LQASLKLYADDSAPALA-IKATME 47
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 31.2 bits (71), Expect = 0.21
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 16/75 (21%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWR--RDNSAAL-----------STGGSIYRGNIL 237
R + G TV ++CY N + S S+ L
Sbjct: 26 RFIARKRGFTVKMHCYMNSASGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLA---TL 82
Query: 238 KIPNITKTDRGTYYC 252
I I D G Y+C
Sbjct: 83 TIQGIRFEDNGIYFC 97
Score = 28.1 bits (63), Expect = 2.5
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 16/77 (20%)
Query: 88 QTADLKCSVQYADDYPVIW---MKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTY 144
T + C + A V W +MD + L + R + + + +T
Sbjct: 34 FTVKMHCYMNSASGN-VSWLWKQEMDENPQQ----------LKLEKGRMEESQNESLAT- 81
Query: 145 ILSIKEIQETDAGIYKC 161
L+I+ I+ D GIY C
Sbjct: 82 -LTIQGIRFEDNGIYFC 97
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 30.8 bits (70), Expect = 0.22
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 262 MKRNIAVEV----EFAPVITINR-------PRQGQALQYDAILECHVEA-YPPP-AIVWI 308
M R++A+ V + + I R R L C+V +P + +
Sbjct: 1 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
Query: 309 KDGVQI 314
K+G +I
Sbjct: 61 KNGERI 66
Score = 30.8 bits (70), Expect = 0.24
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 179 VRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRD 220
++R P I S G++ +L CY +GF P+ + ++
Sbjct: 21 IQRTPKIQVYSRHPAEN--GKSNFLNCYVSGFHPSDIEVDLLKN 62
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 31.9 bits (73), Expect = 0.24
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 18/112 (16%)
Query: 132 RFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAE------VELIVRRPPII 185
+F++ PETST L+I +++ D Y C + + +LI+ +
Sbjct: 68 KFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLD 127
Query: 186 SDNSTRSVI-------VSEGQTVYLYCYANGF-PAP-TISWRRDNSAALSTG 228
+D S + I + C F P I W +T
Sbjct: 128 ADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHW---EEKKSNTI 176
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 31.9 bits (72), Expect = 0.25
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ L+C+ V W + + ++ L G+ + R + T + + L
Sbjct: 17 ADSGLRCNFSTTMKS-VQWFQQNHRGRLITLFYLAQGTK--ENGRLKSTFNSKERYSTLH 73
Query: 148 IKEIQETDAGIYKCEV 163
IK+ Q D+G Y C
Sbjct: 74 IKDAQLEDSGTYFCAA 89
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.8 bits (70), Expect = 0.25
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDN 221
S G L C+A GF P +I+ +D
Sbjct: 35 ASAGTKNVLNCFAAGFHPPKISITLMKDG 63
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAI--VWIKDGVQI 314
P + + R + +L C + PP I +KDGV +
Sbjct: 25 PKVQV-YSRFPASAGTKNVLNCFAAGFHPPKISITLMKDGVPM 66
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 32.0 bits (73), Expect = 0.26
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 237 LKIPNITKTDRGTYYCVAQNGV----GRG----MKRNIAVEVEFAPVITINRPRQGQALQ 288
L+I + D G YYC + V G G +KR A AP ++I P Q
Sbjct: 111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADA-----APTVSIFPPSSEQLTS 165
Query: 289 YDAILECHVEAYPPPA--IVWIKDGVQIMNN-QHYSVSHFATSDEFSDTS-LRVITIERR 344
A + C + + P + W DG + N + + +S +S L + E
Sbjct: 166 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE 225
Query: 345 QFGQYACKAANKYGSAQKEIELFDR 369
+ Y C+A +K S ++ F+R
Sbjct: 226 RHNSYTCEATHK-TSTSPIVKSFNR 249
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 30.1 bits (68), Expect = 0.38
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 182 PPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK--- 238
P IS ++ G V C T R++ + + + + + +
Sbjct: 9 RPSISAEP--GTVIPLGSHVTFVCRGP-VGVQTFRLERESRSTYNDTEDVSQASPSESEA 65
Query: 239 ---IPNITKTDRGTYYCVAQNGVG 259
I ++++ + G Y C+
Sbjct: 66 RFRIDSVSEGNAGPYRCIYYKPPK 89
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 30.0 bits (67), Expect = 0.43
Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 12/96 (12%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+ A + + W E G + R+++ + L
Sbjct: 24 EDAVFSLDL--STIIQGTWFL----NGEELKSNEPEGQVEPGALRYRIEQK--GLQHRLI 75
Query: 148 IKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRPP 183
+ ++ D+G V L ++
Sbjct: 76 LHAVKHQDSGALVGFSC----PGVQDSAALTIQESS 107
Score = 28.4 bits (63), Expect = 1.4
Identities = 13/82 (15%), Positives = 20/82 (24%), Gaps = 16/82 (19%)
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRRD------NSAALSTGGSIYRGNI-------- 236
V V +G+ + T W + N R I
Sbjct: 16 EDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHR 73
Query: 237 LKIPNITKTDRGTYYCVAQNGV 258
L + + D G + GV
Sbjct: 74 LILHAVKHQDSGALVGFSCPGV 95
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 31.1 bits (71), Expect = 0.44
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 120 ISMSGSLIIHDS---RFQLTTDPETSTYILSIKEIQETDAGIYKCE-------------- 162
+ + + I D + + + +P ST IL+I ++E D IY C
Sbjct: 52 VLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAE 111
Query: 163 ----VIISLNNKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-FPAP-TIS 216
++I + ++ A++ + +T C FP +
Sbjct: 112 GTKLIVIPSDKRLDADISPKPTIFLPSVAETN------LHKTGTYLCLLEAFFPDVIRVY 165
Query: 217 WRRDNSAALS 226
W+ + +
Sbjct: 166 WKEKDGNTIL 175
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 30.9 bits (70), Expect = 0.53
Identities = 18/74 (24%), Positives = 28/74 (37%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYILS 147
+TA L CS + + W + + L +S S D RF + + L
Sbjct: 143 ETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLH 202
Query: 148 IKEIQETDAGIYKC 161
I + Q D+ Y C
Sbjct: 203 IADSQPGDSATYFC 216
Score = 29.3 bits (66), Expect = 1.6
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 23/95 (24%)
Query: 189 STRSVIVSEGQTVYLYCYANGFPAPTISW-RRDNSAAL------STGGSIYRGNI----- 236
S R+ + G V L C + W R+D L GS +G+I
Sbjct: 6 SPRNKVAVTGGKVTLSCNQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYK 64
Query: 237 ----------LKIPNITKTDRGTYYCVAQNGVGRG 261
L + T + Y+C + +
Sbjct: 65 ASRPSQENFSLILELATPSQTSVYFCASGDLGQTN 99
Score = 29.0 bits (65), Expect = 2.4
Identities = 26/202 (12%), Positives = 50/202 (24%), Gaps = 38/202 (18%)
Query: 88 QTADLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSLIIHDSRFQ--LTTDPETSTYI 145
L C+ + + W + DT + + S + P +
Sbjct: 16 GKVTLSCNQTNNHNN-MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFS 74
Query: 146 LSIKEIQETDAGIYKC---EVIISLNNKVSAEVELIVRRPPIISDN------------ST 190
L ++ + +Y C ++ + + S
Sbjct: 75 LILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSP 134
Query: 191 RSVIVSEGQTVYLYCYANGFPAPTISWRR------------DNSAALSTGGSIYRGNI-- 236
+S+ V EG+T L C W + S + +
Sbjct: 135 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNK 194
Query: 237 ------LKIPNITKTDRGTYYC 252
L I + D TY+C
Sbjct: 195 REKKLSLHIADSQPGDSATYFC 216
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 30.3 bits (68), Expect = 0.65
Identities = 27/177 (15%), Positives = 49/177 (27%), Gaps = 36/177 (20%)
Query: 192 SVIVSEGQTVYLYC-YANGFPAPTISW------------------RRDNSAALSTGGSIY 232
S+ +E + V+L C ++ I W +N A
Sbjct: 8 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDR 67
Query: 233 RGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNI---AVEVEFAPVITINRPR--QGQAL 287
+ + L + T D YYC+ G + + P I P Q +
Sbjct: 68 KSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLRDS 127
Query: 288 QYDAILECHVEAYPPPAIV--WIKDGVQI----------MNNQHYSVSHFATSDEFS 332
+ C + V V I M+ + S ++ +F+
Sbjct: 128 KSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFA 184
Score = 29.9 bits (67), Expect = 1.2
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 12/179 (6%)
Query: 88 QTADLKCSVQYADDYPVI-WMKMDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETSTYIL 146
+ L C+ I W + ++ E + ++ ++ + + D ++ST L
Sbjct: 15 EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSST--L 72
Query: 147 SIKEIQETDAGIYKCEVIISLNNKVSAEV-----ELIVRRPPIISDNSTRSVIVSEGQTV 201
+ DA +Y C + ++ L V P I + + + +
Sbjct: 73 ILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTV-HPNIQNPDPAVYQLRDSKSSD 131
Query: 202 YLYCYANGFP--APTISWRRDNSAALSTGGSIYRGNILKIPNITK-TDRGTYYCVAQNG 257
C F + + R K + +++ + C
Sbjct: 132 KSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFN 190
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 30.4 bits (69), Expect = 0.68
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
PP ++ + V + L C+ + F P ++W R+
Sbjct: 84 NVPPEVTVLTNSPV--ELREPNVLICFIDKFTPPVVNVTWLRNG 125
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 29.3 bits (66), Expect = 0.72
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 13/74 (17%)
Query: 194 IVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK--------IPNITKT 245
++S+G V + C + + R G + + I + +T
Sbjct: 19 MISQGTFVTVVCSYSD-KHDLYNMVRLEKD----GSTFMEKSTEPYKTEDEFEIGPVNET 73
Query: 246 DRGTYYCVAQNGVG 259
G Y C+ G+
Sbjct: 74 ITGHYSCIYSKGIT 87
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_B 1k8i_B*
Length = 211
Score = 30.4 bits (69), Expect = 0.73
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 190 TRSVIVSEGQTVYLYCYANGF-PAP-TISWRRD 220
++ + + V L CY GF PA TI+WR++
Sbjct: 102 AKTTPFNTREPVMLACYVWGFYPAEVTITWRKN 134
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 30.5 bits (69), Expect = 0.85
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 17/127 (13%)
Query: 142 STYILSIKEIQETDAGIYKCEVIISLNNKVSAEVELIVRRP---PIISDNSTRSVIVSEG 198
+ + L I ++ D GIY C A +L ++R P +S S
Sbjct: 111 TDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVS-IFPPSSEQLTS 169
Query: 199 QTVYLYCYANGF--PAPTISWRRDNSA----------ALSTGGSIYRG-NILKIPNITKT 245
+ C+ N F + W+ D S + S Y + L +
Sbjct: 170 GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE 229
Query: 246 DRGTYYC 252
+Y C
Sbjct: 230 RHNSYTC 236
Score = 28.2 bits (63), Expect = 3.8
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 72 TPTISYISQEQIKDIAQTADLKCSVQ--YADDYPVIWMKMDTAKKMEPLPISMSGSLIIH 129
PT+S + + A + C + Y D V W + ++ +G L
Sbjct: 154 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ--------NGVLNSW 205
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEV 163
+ + S+ L++ + + Y CE
Sbjct: 206 TDQDSKDSTYSMSST-LTLTKDEYERHNSYTCEA 238
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 29.2 bits (66), Expect = 1.0
Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 19/84 (22%)
Query: 189 STRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAALS-----TGGSIYRGNI------ 236
+SV V+ G++ L C P I W R A G R
Sbjct: 9 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTK 68
Query: 237 -------LKIPNITKTDRGTYYCV 253
+ I NIT D GTYYCV
Sbjct: 69 RNNLDFSISISNITPADAGTYYCV 92
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 30.1 bits (68), Expect = 1.1
Identities = 31/165 (18%), Positives = 47/165 (28%), Gaps = 46/165 (27%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKC----------------------EVIISLN 168
SR ++ D + L + +Q D G Y C V +S
Sbjct: 65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSG 124
Query: 169 NKVSAEVELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANG-------------FPAP-T 214
S I S + S G V L C + AP
Sbjct: 125 GGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKL 184
Query: 215 ISWRRDN-----SAALSTGGSIYRGN--ILKIPNITKTDRGTYYC 252
+ + ++ + S GS G L I ++ D TY+C
Sbjct: 185 LIYNTNSLQTGIPSRFSGSGS---GTDYTLTISSLQPEDVATYFC 226
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin
variable domain-like beta-sandwich, homodimer, immune
system; 2.00A {Mus musculus} SCOP: b.1.1.1
Length = 117
Score = 28.8 bits (64), Expect = 1.3
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 4/83 (4%)
Query: 88 QTADLKCSVQY---ADDYPVIWMKMDTAKKMEPLPISMSGSLIIH-DSRFQLTTDPETST 143
A C D+ V ++ + E + + + + S
Sbjct: 15 GVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESR 74
Query: 144 YILSIKEIQETDAGIYKCEVIIS 166
L+I+ ++ D G+Y C+V +
Sbjct: 75 VNLTIQGLRAVDTGLYLCKVELM 97
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.4 bits (64), Expect = 1.3
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPT--ISWRRDNSAA----LSTGGSIYRGNI---- 236
D + R++ G+++ + C +W R + + G Y +
Sbjct: 4 DQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGS 63
Query: 237 ----LKIPNITKTDRGTYYCVAQNGVGRG 261
L+I ++ D GTY C A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQADYSPSCY 92
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 28.5 bits (64), Expect = 1.4
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 183 PIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK---- 238
I NS S+++S+G V + C + + R G + +
Sbjct: 10 ITIFPNS--SLMISQGTFVTVVCSYSD-KHDLYNMVRLEKD----GSTFMEKSTEPYKTE 62
Query: 239 ----IPNITKTDRGTYYCVAQNGVG 259
I + +T G Y C+ G+
Sbjct: 63 DEFEIGPVNETITGHYSCIYSKGIT 87
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 176 ELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRD 220
+I + P I +R G+ L CY F P I ++
Sbjct: 25 SMIQKTPQIQV--YSRHPP-ENGKPNILNCYVTQFHPPHIEIQMLKN 68
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 180 RRPPIISDNSTRSVIVSEGQTVYLYCYANGF-PAP-TISWRRDN 221
PP ++ V GQ L C+ + F P ++W +
Sbjct: 84 NDPPEVTVFPKEPV--ELGQPNTLICHIDKFFPPVLNVTWLCNG 125
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 28.0 bits (63), Expect = 2.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 130 DSRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIIS 166
D RF++T P + +S+ + D+G Y C I
Sbjct: 61 DCRFRVTQLPNGRDFHMSVVRARRNDSGTYLCGAISL 97
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component;
electron transport; HET: FMN; NMR {Escherichia coli}
SCOP: c.23.5.2
Length = 167
Score = 28.4 bits (64), Expect = 2.5
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 8/46 (17%)
Query: 67 ASSQRTPTISYISQ--------EQIKDIAQTADLKCSVQYADDYPV 104
A+ TI SQ E ++D A L + A DY
Sbjct: 6 AAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKF 51
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 28.6 bits (64), Expect = 2.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 195 VSEGQTVYLYCYANGF-PAP-TISWRRDN 221
V GQ L C+ + P I+W R++
Sbjct: 101 VLLGQPNTLICFVDNIFPPVINITWLRNS 129
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 273 APVITINRPRQGQALQYDAILECHVEA-YPPP-AIVWIKDG 311
AP T+ P+ L L C V+ +PP I W+++
Sbjct: 90 APQATV-FPKSPVLLGQPNTLICFVDNIFPPVINITWLRNS 129
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis,
CE migration, acetylation, actin-binding, cytoplasm,
phosphopr protein binding; HET: EPE; 1.80A {Homo
sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A*
Length = 493
Score = 28.9 bits (64), Expect = 3.2
Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 25/218 (11%)
Query: 163 VIISLNNK-VSAE--VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGF----PAPTI 215
V+ + N + VS ++L + + + I + + + + +
Sbjct: 264 VLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGV 323
Query: 216 SWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPV 275
+ A +R + + + G + +NG A + E +
Sbjct: 324 QSTASSKNASCYFDIEWRDRRITL----RASNGKFVTSKKNG-QLAASVETAGDSELFLM 378
Query: 276 ITINRP------RQG--QALQYDAILECHVEAYPPPAIVWIKDGV---QIMNNQHYSVSH 324
INRP G + L+ + +Y + DG + ++++V
Sbjct: 379 KLINRPIIVFRGEHGFIGCRKVTGTLDANRSSYDVFQLE-FNDGAYNIKDSTGKYWTVGS 437
Query: 325 FATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQK 362
+ DT + E + + A K +Y
Sbjct: 438 DSAVTSSGDTPVD-FFFEFCDYNKVAIKVGGRYLKGDH 474
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase,
translocation, single tranded RNA polymerase, RNA
protein complex, processivity, heterodimer; HET: 3AT;
2.06A {Vaccinia virus WR} PDB: 3er8_C* 3erc_C* 3owg_A
2ga9_D* 2gaf_D
Length = 479
Score = 28.9 bits (64), Expect = 3.4
Identities = 11/51 (21%), Positives = 26/51 (50%)
Query: 32 IHEVTGEKVTSVILLFKMSVAGPSIIVALSFLISLASSQRTPTISYISQEQ 82
+HE++ + + ILL++M +G L S+ + + P S+ +++
Sbjct: 412 VHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTERDK 462
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 27.4 bits (61), Expect = 3.7
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 131 SRFQLTTDPETSTYILSIKEIQETDAGIYKCEVIISLNNKVSAE---VELIV 179
RF D E S DAG Y+C +S S + VEL++
Sbjct: 43 LRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPVELVL 94
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 28.3 bits (63), Expect = 4.0
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 19/168 (11%)
Query: 206 YANGFPA-PTISWRRDNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGV---GRG 261
Y F T++ D SA ST Y +++ ++ D Y+C + G+G
Sbjct: 60 YNERFKGKATLT--ADTSA--ST---AY----VELSSLRSEDTAVYFCTRSLNMAYWGQG 108
Query: 262 MKRNIAVEVEFAPVITINRPRQGQALQYDAILECHVEAYPPPAIV--WIKDGVQIMNNQH 319
++ P + P A L C V+ Y P + W + + H
Sbjct: 109 TLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGA--LTSGVH 166
Query: 320 YSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIELF 367
+ +S +S +S+ + Y C +K + + + ++
Sbjct: 167 TFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVE 214
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 28.4 bits (63), Expect = 4.3
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 220 DNSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVI--T 277
D+ A + GS L +P + D G + C A N G+ K N V V P
Sbjct: 423 DSVARVLPNGS------LFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEI 476
Query: 278 INRPRQGQALQYDAILECHVE-AYPPPAIVWIKDG 311
++ + A + + C E +YP + W DG
Sbjct: 477 VDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDG 511
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 26.8 bits (60), Expect = 4.9
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 24/95 (25%)
Query: 192 SVIVSEGQTVYLYCYANG-FPAPTISW-------------RRDNSA---ALSTGG--SIY 232
V+ G V L C + + P + W D+S A T G S+
Sbjct: 9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVK 68
Query: 233 RGNI-----LKIPNITKTDRGTYYCVAQNGVGRGM 262
L I + D TYYC
Sbjct: 69 HILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDK 103
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA
complex, signaling, transcription, notch, activator,
alternative splicing; HET: XYL; 2.00A {Mus musculus}
PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Length = 422
Score = 28.1 bits (62), Expect = 5.3
Identities = 16/86 (18%), Positives = 29/86 (33%)
Query: 175 VELIVRRPPIISDNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRG 234
+ L+ + + R + GQTV L C G P + R+ +
Sbjct: 196 IHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVS 255
Query: 235 NILKIPNITKTDRGTYYCVAQNGVGR 260
+ K K Y C++Q + +
Sbjct: 256 QLHKCAFYLKDTERMYLCLSQERIIQ 281
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 28.0 bits (62), Expect = 5.4
Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 248 GTYYCVAQNGVGRGMKRNIAVEVEFAPVITINRPRQGQALQYD----AILECHVEAYPPP 303
GT C A E+ P + + P+ L ++ P
Sbjct: 1 GTKSCD----KTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP 56
Query: 304 A--IVWIKDGVQIMNNQHYSVSHFATSDEFSDTS-LRVITIERRQFGQYACKAANK 356
W DGV++ N + + + S L V+ + +Y CK +NK
Sbjct: 57 EVKFNWYVDGVEVHNAK-TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK 111
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein;
1.60A {Streptomyces reticuli} PDB: 3fpv_A
Length = 192
Score = 27.3 bits (60), Expect = 6.3
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 50 SVAGPSIIVALSFLISLASSQRTPTISYISQEQIKDIAQTADLKCSVQYADDYPVIWMKM 109
+ A + + A ++++ E A+ A D V +
Sbjct: 37 ANAADTTEATPAAAPVAARGGELTQSTHLTLEAATKAARAAVEAAE---KDGRHVSVAVV 93
Query: 110 DTA 112
D
Sbjct: 94 DRN 96
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite,
transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Length = 332
Score = 27.8 bits (62), Expect = 6.4
Identities = 6/71 (8%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 78 ISQEQIKDIAQTA-----------DLKCSVQYADDYPVIWMKMDTAKKMEPLPISMSGSL 126
++ E++ A D + +++ + + +P+ L
Sbjct: 134 LTDEEVNLSAFVGEGGYHGTPSGADNTAATY---GGLILYRRQNGKSVFKPIAFQQRLYL 190
Query: 127 IIHDSRFQLTT 137
++ + +T
Sbjct: 191 VVVGTGINAST 201
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 27.4 bits (61), Expect = 6.8
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 29/136 (21%)
Query: 142 STYILSIKEIQETDAGIYKCEVIISLNN--------KVSAEVELIVRRPPIISDNSTRSV 193
++ L+I ++ D Y C + K++ + + S+ +
Sbjct: 89 TSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEEL 148
Query: 194 IVSEGQTVYLYCYANGF--PAPTISWRRDNSAALSTGGSIYRGNI-------------LK 238
+ L C + F A T++W+ D + + L
Sbjct: 149 ---QANKATLVCLISDFFPGAVTVAWKADGAP---VKAGVETTKPSKQSNNKYAASSYLS 202
Query: 239 IPNITKTDRGTYYCVA 254
+ +Y C
Sbjct: 203 LTPEQWKSHRSYSCQV 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.1 bits (61), Expect = 7.1
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 27/84 (32%)
Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE---------L 366
N Y +F D+F ++ QF ++ A N YG+ + E + L
Sbjct: 57 NGVDY---YFVDKDDFERK------LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICL 107
Query: 367 FD---------RETQTGDETFPIF 381
F+ +E++ + IF
Sbjct: 108 FEMNINGVKQLKESKHIQDGIYIF 131
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 26.8 bits (60), Expect = 7.2
Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 19/84 (22%)
Query: 189 STRSVIVSEGQTVYLYCYAN-GFPAPTISWRRDNSAA----------LSTGGSIY----R 233
+SV V+ G++ L C P I W R A + +
Sbjct: 14 PEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTK 73
Query: 234 GN----ILKIPNITKTDRGTYYCV 253
N + I NIT D GTYYCV
Sbjct: 74 RNNLDFSISISNITPADAGTYYCV 97
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 27.6 bits (62), Expect = 7.3
Identities = 47/229 (20%), Positives = 73/229 (31%), Gaps = 48/229 (20%)
Query: 189 STRSVIVSEGQTVYLYCYANGF----PAPTISWRRDN--------SAALSTGGSIYRGNI 236
S S+ VS GQ + C A+ + W + S S
Sbjct: 7 SPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRF 66
Query: 237 ----------LKIPNITKTDRGTYYCVAQNGV----GRGMKRNIAVEV---EFAPVITIN 279
L I + D TYYC N V G G K +++ + AP ++I
Sbjct: 67 SGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTK----LDLKRADAAPTVSIF 122
Query: 280 RPRQGQALQYDAILECHVEAY-PPPAIV-WIKDGVQIMNNQHYSVSHFATSDEFSDT--- 334
P Q A + C + + P V W DG + N S + D T
Sbjct: 123 PPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS---WTDQDSKDSTYSM 179
Query: 335 --SLRVITIERRQFGQYACKAANKYGSAQKEIELFDRE-----TQTGDE 376
+L + E + Y C+A +K ++ E ++G
Sbjct: 180 SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGG 228
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel,
RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP:
c.6.3.2 PDB: 2czv_A*
Length = 212
Score = 27.3 bits (60), Expect = 7.8
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 221 NSAALSTGGSIYRGNILKIPNITKTDRGTYYCVAQNGVGRGMKRNIAVEVEFAPVITINR 280
++ G + + P + + D G + +A+ V K+N+A+ P++ N
Sbjct: 89 IRYSIEKGV-----DAIISPWVNRKDPGIDHVLAKLMV----KKNVALGFSLRPLLYSNP 139
Query: 281 PRQGQALQYDAILECHVEAYPPPAIV 306
+ L++ VE Y +
Sbjct: 140 YERANLLRFMMKAWKLVEKYKVRRFL 165
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 27.6 bits (61), Expect = 8.0
Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 182 PPIISDNSTRSVIVS--------EGQTVYLYCYANGFPAPTISWRR 219
P +++ ++ + ++ G+T + Y P + +R
Sbjct: 9 PDLLTTDARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQR 54
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 27.1 bits (61), Expect = 8.3
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
+DGV Y +F + + F I+ + +YA N YG+ + +E
Sbjct: 52 QDGV------DY---YFRSREVFEQA------IKDGKMLEYAEYVGNYYGTPLEYVE 93
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.1 bits (61), Expect = 8.3
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
Query: 309 KDGVQIMNNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
+G Y +F + DEF I+ +F ++A + N YGS ++
Sbjct: 45 VNGK------DY---NFVSVDEFKSM------IKNNEFIEWAQFSGNYYGSTVASVK 86
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer,
immunoglobulin superfamily (beta S fold, receptor,
signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A
{Homo sapiens} PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Length = 130
Score = 26.6 bits (58), Expect = 8.8
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 88 QTADLKCSVQY---ADDYPVIWMK--MDTAKKMEPLPISMSGSLIIHDSRFQLTTDPETS 142
A C A + V ++ ++ M L D T +
Sbjct: 17 GIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSI-CTGTSSGN 75
Query: 143 TYILSIKEIQETDAGIYKCEV 163
L+I+ ++ D G+Y C+V
Sbjct: 76 QVNLTIQGLRAMDTGLYICKV 96
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 27.1 bits (61), Expect = 9.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 316 NNQHYSVSHFATSDEFSDTSLRVITIERRQFGQYACKAANKYGSAQKEIE 365
+ +HY F DEF + I R F ++A N YG++++ IE
Sbjct: 62 HGEHY---FFVNHDEFKEM------ISRDAFLEHAEVFGNYYGTSREAIE 102
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth
factor-transferase), FLT-1 receptor, cystine
glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB:
1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Length = 95
Score = 25.8 bits (56), Expect = 9.4
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 187 DNSTRSVIVSEGQTVYLYCYANGFPAPTISWRRDNSAALSTGGSIYRGNILK---IPNIT 243
+ ++EG+ + + C P T++ ++ L G + K I N T
Sbjct: 9 SEIPEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNAT 67
Query: 244 KTDRGTYYCVAQNG 257
+ G C A
Sbjct: 68 YKEIGLLTCEATVN 81
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 27.4 bits (59), Expect = 9.4
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 16/88 (18%)
Query: 274 PVITINRPRQGQALQYDAILECHVEAYPPPAIVWIKDGVQIMNNQHYSVSHFATSDEFSD 333
V + A +L C + I W D + S
Sbjct: 7 DVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLG--------------SG 50
Query: 334 TSLRVITIERRQFGQYACKAANKYGSAQ 361
+L + E GQY C + S
Sbjct: 51 KTLTIQVKEFGDAGQYTCHKGGEVLSHS 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.391
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,754,203
Number of extensions: 340486
Number of successful extensions: 2933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1627
Number of HSP's successfully gapped: 759
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)