Query psy16653
Match_columns 301
No_of_seqs 153 out of 1755
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 18:34:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 100.0 3.4E-40 7.4E-45 288.7 20.5 284 15-300 104-472 (485)
2 PF00083 Sugar_tr: Sugar (and 100.0 4.6E-39 9.9E-44 288.7 -9.6 291 4-297 76-451 (451)
3 KOG0254|consensus 100.0 7.4E-34 1.6E-38 258.3 19.0 294 5-300 120-501 (513)
4 TIGR00887 2A0109 phosphate:H+ 100.0 1.9E-32 4.1E-37 248.8 12.8 286 4-295 86-501 (502)
5 PRK10077 xylE D-xylose transpo 100.0 7.3E-29 1.6E-33 224.3 19.3 289 4-299 85-474 (479)
6 TIGR01299 synapt_SV2 synaptic 100.0 2.3E-29 4.9E-34 233.6 14.9 282 4-290 232-741 (742)
7 KOG0253|consensus 100.0 5.9E-28 1.3E-32 199.6 17.7 279 5-290 144-527 (528)
8 TIGR00898 2A0119 cation transp 100.0 2.3E-28 4.9E-33 222.5 14.0 278 4-292 157-504 (505)
9 TIGR00879 SP MFS transporter, 99.9 2.6E-25 5.7E-30 200.3 19.1 289 3-292 100-480 (481)
10 KOG0255|consensus 99.9 5.2E-25 1.1E-29 201.1 17.2 285 4-297 148-507 (521)
11 PRK10642 proline/glycine betai 99.9 3.1E-25 6.6E-30 201.0 14.8 260 4-290 87-437 (490)
12 KOG0252|consensus 99.9 2.3E-25 5E-30 189.4 5.2 279 10-298 120-513 (538)
13 COG2271 UhpC Sugar phosphate p 99.9 3.1E-24 6.7E-29 181.4 4.5 263 3-283 93-435 (448)
14 PRK09952 shikimate transporter 99.9 3.6E-22 7.9E-27 178.5 14.5 249 4-287 94-437 (438)
15 PRK10406 alpha-ketoglutarate t 99.9 9.3E-22 2E-26 175.6 14.8 246 3-290 92-430 (432)
16 TIGR00903 2A0129 major facilit 99.9 1.8E-22 3.9E-27 175.9 9.9 216 25-279 77-362 (368)
17 PRK11663 regulatory protein Uh 99.9 3.8E-22 8.3E-27 178.2 7.8 263 3-288 87-430 (434)
18 TIGR02332 HpaX 4-hydroxyphenyl 99.8 8E-22 1.7E-26 174.9 6.5 256 3-271 72-410 (412)
19 PRK12307 putative sialic acid 99.8 1.4E-20 2.9E-25 167.9 10.0 258 3-285 82-412 (426)
20 PRK09556 uhpT sugar phosphate 99.8 6.3E-21 1.4E-25 171.9 7.5 265 3-286 93-454 (467)
21 PRK03545 putative arabinose tr 99.8 2.5E-20 5.4E-25 164.3 10.2 245 3-291 73-388 (390)
22 COG2814 AraJ Arabinose efflux 99.8 3.5E-20 7.7E-25 158.5 9.9 238 4-283 78-387 (394)
23 PRK11273 glpT sn-glycerol-3-ph 99.8 4.4E-20 9.5E-25 165.8 11.0 261 3-282 92-435 (452)
24 KOG2532|consensus 99.8 1.7E-20 3.7E-25 166.5 7.7 255 3-282 102-447 (466)
25 PRK11551 putative 3-hydroxyphe 99.8 5.9E-20 1.3E-24 162.8 10.7 246 3-281 79-395 (406)
26 TIGR00893 2A0114 d-galactonate 99.8 1.6E-20 3.4E-25 165.0 6.8 261 3-280 58-397 (399)
27 PRK15075 citrate-proton sympor 99.8 1.4E-19 3.1E-24 161.7 12.7 221 4-261 86-398 (434)
28 TIGR00891 2A0112 putative sial 99.8 4.7E-19 1E-23 156.6 12.0 248 3-264 76-398 (405)
29 TIGR00712 glpT glycerol-3-phos 99.8 1.1E-19 2.3E-24 162.7 7.5 267 3-287 90-438 (438)
30 PRK09705 cynX putative cyanate 99.8 1E-18 2.2E-23 154.1 12.2 245 3-290 73-389 (393)
31 TIGR00894 2A0114euk Na(+)-depe 99.8 3.1E-19 6.7E-24 161.0 8.4 254 3-281 105-449 (465)
32 PRK10489 enterobactin exporter 99.8 1E-18 2.2E-23 155.5 11.5 259 3-298 81-415 (417)
33 TIGR00895 2A0115 benzoate tran 99.8 6.3E-19 1.4E-23 155.2 7.1 246 4-254 82-397 (398)
34 KOG2533|consensus 99.8 2.3E-19 5.1E-24 159.7 3.5 174 9-201 116-302 (495)
35 TIGR00881 2A0104 phosphoglycer 99.7 6.8E-19 1.5E-23 153.9 4.7 243 3-263 59-378 (379)
36 TIGR00890 2A0111 Oxalate/Forma 99.7 2.9E-18 6.4E-23 149.8 8.0 237 3-275 67-375 (377)
37 TIGR00883 2A0106 metabolite-pr 99.7 9.1E-18 2E-22 147.6 11.0 232 4-270 65-389 (394)
38 PRK03893 putative sialic acid 99.7 1.3E-17 2.8E-22 151.7 8.4 112 4-116 85-201 (496)
39 PRK05122 major facilitator sup 99.7 4.4E-17 9.6E-22 144.1 11.0 240 3-289 80-395 (399)
40 PRK10213 nepI ribonucleoside t 99.7 7.3E-17 1.6E-21 142.4 10.6 232 3-277 84-386 (394)
41 KOG1330|consensus 99.7 1.4E-19 3.1E-24 154.8 -7.1 112 3-114 97-214 (493)
42 PRK12382 putative transporter; 99.7 1.9E-16 4.2E-21 139.7 11.1 234 3-282 80-389 (392)
43 PRK10091 MFS transport protein 99.7 2.4E-16 5.1E-21 138.7 9.5 111 3-113 67-182 (382)
44 TIGR00899 2A0120 sugar efflux 99.7 5.5E-16 1.2E-20 135.7 11.3 233 7-280 67-372 (375)
45 PRK15403 multidrug efflux syst 99.7 6.1E-16 1.3E-20 137.3 10.5 111 3-113 80-195 (413)
46 TIGR00897 2A0118 polyol permea 99.6 2.3E-15 4.9E-20 133.3 12.6 243 3-280 77-399 (402)
47 TIGR00892 2A0113 monocarboxyla 99.6 7.2E-17 1.6E-21 145.0 2.9 257 4-277 84-416 (455)
48 PRK09874 drug efflux system pr 99.6 6.3E-16 1.4E-20 137.0 8.5 243 4-284 84-400 (408)
49 PRK10473 multidrug efflux syst 99.6 5.1E-16 1.1E-20 137.0 7.5 110 4-113 68-182 (392)
50 TIGR00711 efflux_EmrB drug res 99.6 1.7E-15 3.8E-20 137.2 10.6 112 3-114 66-182 (485)
51 PLN00028 nitrate transmembrane 99.6 3.2E-16 7E-21 141.5 5.3 245 4-281 101-432 (476)
52 PRK03699 putative transporter; 99.6 1.3E-15 2.8E-20 134.6 8.7 235 4-280 72-378 (394)
53 cd06174 MFS The Major Facilita 99.6 4.1E-15 9E-20 128.5 11.4 249 3-280 63-350 (352)
54 PRK14995 methyl viologen resis 99.6 4.1E-15 8.8E-20 135.2 11.5 112 3-114 70-187 (495)
55 PRK10504 putative transporter; 99.6 3.7E-15 7.9E-20 134.7 11.1 110 4-113 75-189 (471)
56 PRK11646 multidrug resistance 99.6 1.2E-15 2.6E-20 135.0 7.5 109 3-111 75-187 (400)
57 PRK11010 ampG muropeptide tran 99.6 2.9E-15 6.3E-20 135.7 10.0 239 7-281 84-402 (491)
58 TIGR00900 2A0121 H+ Antiporter 99.6 1.2E-15 2.7E-20 132.7 7.1 103 4-106 64-176 (365)
59 PRK03633 putative MFS family t 99.6 4.6E-15 9.9E-20 130.5 10.6 234 4-280 71-370 (381)
60 PRK15402 multidrug efflux syst 99.6 4.5E-15 9.6E-20 131.6 10.1 110 4-113 78-192 (406)
61 TIGR00710 efflux_Bcr_CflA drug 99.6 5.9E-15 1.3E-19 129.6 10.6 111 3-113 69-184 (385)
62 PRK15034 nitrate/nitrite trans 99.6 5.1E-15 1.1E-19 131.0 9.3 234 3-281 99-453 (462)
63 PF07690 MFS_1: Major Facilita 99.6 5.7E-16 1.2E-20 134.2 2.1 111 3-113 61-176 (352)
64 PRK11043 putative transporter; 99.6 1.3E-14 2.7E-19 128.5 10.0 110 3-113 70-184 (401)
65 PRK11195 lysophospholipid tran 99.6 2.7E-14 5.7E-19 126.1 11.6 108 3-114 67-178 (393)
66 PRK15011 sugar efflux transpor 99.6 1.9E-14 4.1E-19 127.1 10.4 107 7-113 85-198 (393)
67 COG2223 NarK Nitrate/nitrite t 99.6 8.1E-15 1.8E-19 124.8 7.5 239 3-282 78-401 (417)
68 PRK11102 bicyclomycin/multidru 99.5 1.1E-14 2.4E-19 127.7 7.2 111 3-113 55-170 (377)
69 TIGR00805 oat sodium-independe 99.5 1.3E-13 2.8E-18 128.1 13.1 195 27-260 172-396 (633)
70 PRK10054 putative transporter; 99.5 3.2E-14 7E-19 125.6 7.1 110 3-112 72-185 (395)
71 TIGR00902 2A0127 phenyl propri 99.5 3.3E-13 7.1E-18 118.7 9.7 216 20-277 87-374 (382)
72 PRK11902 ampG muropeptide tran 99.4 4.7E-13 1E-17 118.6 10.0 109 5-114 69-186 (402)
73 PRK08633 2-acyl-glycerophospho 99.4 3.9E-13 8.4E-18 134.1 9.9 112 4-115 77-205 (1146)
74 PRK11652 emrD multidrug resist 99.4 4.6E-13 9.9E-18 118.3 9.0 111 3-113 72-187 (394)
75 TIGR00886 2A0108 nitrite extru 99.4 7.6E-13 1.6E-17 115.5 8.7 110 4-114 67-193 (366)
76 TIGR00889 2A0110 nucleoside tr 99.4 2.7E-12 5.9E-17 114.2 10.8 247 4-288 69-408 (418)
77 PRK10133 L-fucose transporter; 99.4 1.8E-12 4E-17 115.9 9.0 81 3-83 90-173 (438)
78 PRK06814 acylglycerophosphoeth 99.4 2E-12 4.3E-17 128.9 9.8 97 16-113 97-198 (1140)
79 TIGR00792 gph sugar (Glycoside 99.4 3.3E-12 7.2E-17 114.3 9.5 108 6-113 72-198 (437)
80 TIGR00901 2A0125 AmpG-related 99.4 5E-12 1.1E-16 110.1 10.3 107 7-113 60-182 (356)
81 TIGR00885 fucP L-fucose:H+ sym 99.3 2.5E-12 5.5E-17 114.0 8.1 103 4-106 68-204 (410)
82 TIGR00806 rfc RFC reduced fola 99.3 1.2E-12 2.6E-17 114.7 3.9 193 3-202 91-292 (511)
83 TIGR00896 CynX cyanate transpo 99.3 1.4E-11 3.1E-16 107.2 10.7 96 4-101 65-167 (355)
84 PRK11128 putative 3-phenylprop 99.3 2.6E-11 5.7E-16 106.7 11.8 214 21-275 88-372 (382)
85 PTZ00207 hypothetical protein; 99.3 2.1E-11 4.5E-16 111.2 9.2 125 3-128 90-226 (591)
86 PRK09528 lacY galactoside perm 99.2 7.5E-11 1.6E-15 105.1 11.0 65 220-284 340-405 (420)
87 KOG3764|consensus 99.2 1.6E-12 3.5E-17 109.8 0.2 106 4-109 136-247 (464)
88 TIGR00924 yjdL_sub1_fam amino 99.2 2.4E-10 5.3E-15 103.3 13.1 101 4-104 79-187 (475)
89 TIGR00882 2A0105 oligosacchari 99.2 5.2E-11 1.1E-15 105.3 7.9 218 29-279 101-392 (396)
90 KOG2615|consensus 99.2 5.6E-11 1.2E-15 100.1 6.2 77 8-85 102-178 (451)
91 KOG2504|consensus 99.2 2E-12 4.2E-17 116.7 -2.9 268 4-280 111-474 (509)
92 TIGR02718 sider_RhtX_FptX side 99.1 8.7E-10 1.9E-14 97.3 13.0 203 36-277 106-386 (390)
93 PRK10642 proline/glycine betai 99.1 1.3E-11 2.8E-16 112.2 0.5 120 24-147 339-469 (490)
94 TIGR01272 gluP glucose/galacto 99.1 4.9E-10 1.1E-14 95.6 9.5 91 22-112 5-117 (310)
95 COG2807 CynX Cyanate permease 99.1 5.3E-10 1.2E-14 93.9 9.0 234 6-282 79-385 (395)
96 PRK10207 dipeptide/tripeptide 99.1 3.9E-10 8.4E-15 102.2 8.3 96 4-99 81-184 (489)
97 PRK09584 tppB putative tripept 98.9 8.4E-10 1.8E-14 100.4 5.0 99 4-102 88-194 (500)
98 PF03825 Nuc_H_symport: Nucleo 98.9 9E-09 2E-13 90.7 11.2 245 4-286 68-399 (400)
99 PF05977 MFS_3: Transmembrane 98.9 7.1E-09 1.5E-13 94.2 9.8 226 25-286 101-399 (524)
100 PF11700 ATG22: Vacuole efflux 98.9 1.7E-08 3.6E-13 90.8 11.8 251 6-287 103-472 (477)
101 PF06609 TRI12: Fungal trichot 98.9 1.5E-08 3.3E-13 92.3 10.6 101 5-106 109-214 (599)
102 TIGR01301 GPH_sucrose GPH fami 98.8 2.1E-08 4.6E-13 89.8 9.8 74 40-113 127-222 (477)
103 TIGR00880 2_A_01_02 Multidrug 98.8 1.1E-09 2.3E-14 81.6 -0.2 109 4-112 28-141 (141)
104 COG0738 FucP Fucose permease [ 98.7 1.1E-08 2.4E-13 87.3 4.9 228 8-275 82-402 (422)
105 PRK09669 putative symporter Ya 98.7 2.8E-08 6E-13 89.3 7.5 106 7-112 83-207 (444)
106 KOG3626|consensus 98.7 1.4E-07 3.1E-12 87.0 10.8 192 29-259 239-457 (735)
107 PF03137 OATP: Organic Anion T 98.6 9.1E-09 2E-13 93.8 0.1 85 27-112 141-252 (539)
108 TIGR00788 fbt folate/biopterin 98.5 3.5E-07 7.6E-12 82.7 8.9 80 32-113 125-212 (468)
109 PF01306 LacY_symp: LacY proto 98.5 1.6E-06 3.5E-11 75.8 12.3 68 220-287 337-405 (412)
110 KOG4686|consensus 98.5 3.5E-07 7.5E-12 74.7 6.5 236 24-283 133-444 (459)
111 TIGR01299 synapt_SV2 synaptic 98.4 2.7E-08 5.7E-13 93.8 -1.4 109 4-113 625-737 (742)
112 PRK10429 melibiose:sodium symp 98.4 8.2E-07 1.8E-11 80.5 6.8 107 7-113 80-205 (473)
113 PF13347 MFS_2: MFS/sugar tran 98.4 3.8E-06 8.2E-11 75.2 10.7 105 7-111 75-200 (428)
114 PRK11462 putative transporter; 98.2 5.6E-06 1.2E-10 74.8 9.2 102 12-113 88-208 (460)
115 KOG2325|consensus 98.2 5.9E-07 1.3E-11 79.6 2.1 108 7-115 105-235 (488)
116 TIGR00710 efflux_Bcr_CflA drug 98.2 1.2E-05 2.6E-10 70.6 9.9 69 220-288 118-186 (385)
117 COG2814 AraJ Arabinose efflux 98.2 1.6E-05 3.5E-10 69.0 9.9 64 220-283 126-189 (394)
118 PRK10473 multidrug efflux syst 98.1 9.6E-06 2.1E-10 71.6 8.6 68 220-287 116-183 (392)
119 TIGR02332 HpaX 4-hydroxyphenyl 98.1 1.6E-05 3.5E-10 70.8 9.9 68 220-287 121-194 (412)
120 TIGR00889 2A0110 nucleoside tr 98.1 2.5E-07 5.4E-12 82.5 -2.0 110 4-113 281-406 (418)
121 PRK11663 regulatory protein Uh 98.1 1.9E-05 4.1E-10 70.8 9.7 66 220-285 136-201 (434)
122 PRK05122 major facilitator sup 98.1 5.3E-07 1.1E-11 79.8 -0.7 107 4-111 279-390 (399)
123 PRK09848 glucuronide transport 98.1 5.7E-05 1.2E-09 68.0 12.4 34 227-260 358-391 (448)
124 TIGR00895 2A0115 benzoate tran 98.1 1.4E-05 3.1E-10 70.2 8.2 67 220-286 130-196 (398)
125 PF03092 BT1: BT1 family; Int 98.1 5.1E-06 1.1E-10 74.3 5.0 86 26-111 85-177 (433)
126 PRK09528 lacY galactoside perm 98.0 7.5E-07 1.6E-11 79.5 -0.8 111 3-113 291-407 (420)
127 PRK03545 putative arabinose tr 98.0 4.6E-05 1E-09 67.3 10.4 66 220-285 122-187 (390)
128 TIGR00711 efflux_EmrB drug res 98.0 1.3E-05 2.9E-10 72.7 7.2 68 220-287 115-182 (485)
129 KOG2563|consensus 98.0 1.9E-05 4E-10 68.8 7.3 229 32-292 145-460 (480)
130 COG2211 MelB Na+/melibiose sym 98.0 7.6E-05 1.6E-09 66.3 11.3 102 12-113 91-211 (467)
131 PRK12382 putative transporter; 98.0 1.3E-06 2.7E-11 77.2 0.1 103 4-106 279-386 (392)
132 PRK10213 nepI ribonucleoside t 98.0 8.3E-05 1.8E-09 65.8 10.9 67 220-286 133-199 (394)
133 PRK11551 putative 3-hydroxyphe 97.9 3.3E-05 7.2E-10 68.5 8.1 67 220-286 128-194 (406)
134 TIGR00893 2A0114 d-galactonate 97.9 3.8E-05 8.3E-10 67.2 8.4 68 220-287 107-174 (399)
135 PLN00028 nitrate transmembrane 97.9 9.5E-05 2.1E-09 67.2 10.9 65 220-284 148-221 (476)
136 COG2270 Permeases of the major 97.9 9.3E-05 2E-09 64.2 10.0 244 15-290 100-436 (438)
137 PRK10054 putative transporter; 97.9 6.6E-05 1.4E-09 66.5 9.6 65 220-285 121-185 (395)
138 TIGR00903 2A0129 major facilit 97.9 4.1E-05 9E-10 67.1 8.1 67 220-286 103-169 (368)
139 TIGR00892 2A0113 monocarboxyla 97.9 1.6E-06 3.4E-11 78.3 -0.9 90 14-103 320-415 (455)
140 PRK10504 putative transporter; 97.9 8.5E-05 1.8E-09 67.3 10.2 66 220-285 123-188 (471)
141 PRK09874 drug efflux system pr 97.9 2.7E-06 5.9E-11 75.4 -0.0 103 4-106 288-395 (408)
142 PRK14995 methyl viologen resis 97.9 8.5E-05 1.8E-09 67.8 9.3 67 220-286 119-186 (495)
143 cd06174 MFS The Major Facilita 97.8 2.7E-06 5.8E-11 73.3 -0.6 101 6-106 244-349 (352)
144 TIGR00900 2A0121 H+ Antiporter 97.8 0.00065 1.4E-08 58.9 13.7 61 220-280 117-177 (365)
145 COG2271 UhpC Sugar phosphate p 97.8 2.9E-05 6.2E-10 67.2 4.9 67 220-286 142-210 (448)
146 TIGR00891 2A0112 putative sial 97.8 0.00025 5.5E-09 62.5 11.2 66 220-286 125-192 (405)
147 PRK15403 multidrug efflux syst 97.8 0.00024 5.2E-09 63.3 10.2 68 220-287 129-196 (413)
148 PRK15011 sugar efflux transpor 97.7 6.2E-06 1.3E-10 72.9 -0.0 89 21-111 299-392 (393)
149 PRK11652 emrD multidrug resist 97.7 0.00036 7.8E-09 61.6 10.8 68 220-287 121-188 (394)
150 PRK12307 putative sialic acid 97.7 0.00019 4.2E-09 64.0 9.2 49 220-268 131-179 (426)
151 PRK15462 dipeptide/tripeptide 97.7 0.00026 5.7E-09 64.1 9.9 59 220-278 125-185 (493)
152 TIGR00712 glpT glycerol-3-phos 97.7 0.00017 3.7E-09 64.8 8.7 66 220-285 143-209 (438)
153 PRK15402 multidrug efflux syst 97.7 0.00033 7.2E-09 62.2 10.1 68 220-287 126-193 (406)
154 PRK10091 MFS transport protein 97.7 0.00025 5.4E-09 62.5 9.0 68 220-287 116-183 (382)
155 TIGR00890 2A0111 Oxalate/Forma 97.6 1.2E-05 2.5E-10 70.2 -0.0 99 4-102 270-375 (377)
156 TIGR00880 2_A_01_02 Multidrug 97.6 0.00013 2.9E-09 53.7 5.6 66 220-285 76-141 (141)
157 PRK10489 enterobactin exporter 97.6 8E-06 1.7E-10 72.8 -1.6 108 6-113 291-403 (417)
158 PRK11102 bicyclomycin/multidru 97.6 0.0013 2.9E-08 57.5 12.4 67 220-286 104-170 (377)
159 PRK03699 putative transporter; 97.6 0.00056 1.2E-08 60.5 9.8 60 220-279 120-180 (394)
160 PF07690 MFS_1: Major Facilita 97.6 0.00026 5.6E-09 61.1 7.6 65 220-284 110-174 (352)
161 PRK10077 xylE D-xylose transpo 97.6 3.6E-05 7.8E-10 69.8 2.2 109 5-113 337-461 (479)
162 PF01770 Folate_carrier: Reduc 97.5 7.1E-05 1.5E-09 65.4 3.6 177 19-202 86-277 (412)
163 PRK11273 glpT sn-glycerol-3-ph 97.5 0.00039 8.5E-09 62.7 8.5 67 220-286 145-212 (452)
164 PRK03893 putative sialic acid 97.5 0.00048 1E-08 62.8 8.8 50 220-269 133-182 (496)
165 PRK11646 multidrug resistance 97.5 0.00093 2E-08 59.3 10.4 65 220-285 124-188 (400)
166 PRK15034 nitrate/nitrite trans 97.5 0.0013 2.7E-08 59.1 11.0 79 220-298 152-250 (462)
167 TIGR00898 2A0119 cation transp 97.5 1.9E-05 4.1E-10 72.2 -0.6 107 6-113 387-498 (505)
168 TIGR00881 2A0104 phosphoglycer 97.4 0.00015 3.4E-09 63.1 4.5 67 220-286 108-175 (379)
169 PRK11043 putative transporter; 97.4 0.0017 3.7E-08 57.5 11.1 65 220-284 119-183 (401)
170 TIGR00899 2A0120 sugar efflux 97.4 2E-05 4.3E-10 69.0 -1.2 101 9-111 270-375 (375)
171 PRK15462 dipeptide/tripeptide 97.4 5.7E-05 1.2E-09 68.3 1.7 99 4-102 76-182 (493)
172 PRK10207 dipeptide/tripeptide 97.4 0.00065 1.4E-08 61.9 8.5 53 220-272 130-184 (489)
173 PF06609 TRI12: Fungal trichot 97.4 0.00058 1.3E-08 62.9 7.9 66 220-285 155-221 (599)
174 TIGR00924 yjdL_sub1_fam amino 97.4 2.6E-05 5.7E-10 70.7 -1.2 99 8-106 353-465 (475)
175 COG2223 NarK Nitrate/nitrite t 97.3 0.0012 2.5E-08 57.4 7.8 64 220-284 129-195 (417)
176 TIGR00879 SP MFS transporter, 97.3 4.6E-05 9.9E-10 68.6 -1.1 71 43-113 399-474 (481)
177 TIGR00886 2A0108 nitrite extru 97.2 0.0025 5.5E-08 55.5 9.3 65 220-284 115-190 (366)
178 PRK09584 tppB putative tripept 97.2 5E-05 1.1E-09 69.4 -1.8 101 6-106 352-476 (500)
179 PF03209 PUCC: PUCC protein; 97.1 0.011 2.4E-07 51.5 12.0 53 33-85 95-147 (403)
180 PRK11010 ampG muropeptide tran 97.1 0.0039 8.4E-08 57.0 9.9 66 220-286 132-198 (491)
181 PRK11902 ampG muropeptide tran 97.1 0.0036 7.8E-08 55.5 9.4 65 220-285 119-184 (402)
182 TIGR00897 2A0118 polyol permea 97.1 0.0024 5.2E-08 56.7 7.9 64 220-283 130-194 (402)
183 TIGR00902 2A0127 phenyl propri 97.1 8.6E-05 1.9E-09 65.4 -1.3 100 4-105 270-375 (382)
184 KOG3764|consensus 97.0 0.00089 1.9E-08 57.8 4.4 70 220-289 184-254 (464)
185 PRK09556 uhpT sugar phosphate 97.0 0.00097 2.1E-08 60.4 4.9 64 220-283 147-213 (467)
186 PRK08633 2-acyl-glycerophospho 97.0 0.00024 5.2E-09 71.6 0.8 108 5-112 300-413 (1146)
187 PRK15075 citrate-proton sympor 97.0 0.0084 1.8E-07 53.8 10.6 49 220-268 142-198 (434)
188 TIGR00887 2A0109 phosphate:H+ 97.0 0.029 6.3E-07 51.4 14.3 66 220-286 140-228 (502)
189 TIGR00901 2A0125 AmpG-related 97.0 0.0019 4.2E-08 56.1 6.3 67 220-286 108-182 (356)
190 TIGR00894 2A0114euk Na(+)-depe 96.9 0.0013 2.7E-08 59.6 5.2 65 220-284 156-221 (465)
191 KOG1330|consensus 96.9 0.0001 2.2E-09 64.6 -1.8 132 159-293 86-220 (493)
192 PRK03633 putative MFS family t 96.8 0.00025 5.5E-09 62.4 -0.5 76 31-106 289-369 (381)
193 COG3104 PTR2 Dipeptide/tripept 96.8 0.0054 1.2E-07 54.7 7.5 99 8-106 96-203 (498)
194 PF03825 Nuc_H_symport: Nucleo 96.7 0.00042 9.2E-09 61.3 0.4 108 5-112 274-398 (400)
195 PF05977 MFS_3: Transmembrane 96.7 0.00033 7.2E-09 64.1 -0.8 102 4-105 284-390 (524)
196 PRK09705 cynX putative cyanate 96.7 0.013 2.9E-07 51.8 9.3 56 220-276 122-178 (393)
197 PRK10406 alpha-ketoglutarate t 96.7 0.034 7.3E-07 49.9 12.0 66 220-286 149-222 (432)
198 PRK09952 shikimate transporter 96.7 0.00042 9.2E-09 62.2 -0.2 82 31-113 347-436 (438)
199 KOG2816|consensus 96.6 0.034 7.4E-07 50.1 11.6 72 42-113 127-203 (463)
200 TIGR01301 GPH_sucrose GPH fami 96.6 0.035 7.6E-07 50.3 11.7 68 220-287 139-223 (477)
201 PRK11195 lysophospholipid tran 96.6 0.016 3.4E-07 51.4 9.4 65 220-286 113-177 (393)
202 TIGR02718 sider_RhtX_FptX side 96.6 0.017 3.8E-07 50.9 9.7 65 220-284 122-186 (390)
203 TIGR00769 AAA ADP/ATP carrier 96.6 0.074 1.6E-06 48.1 13.3 37 47-83 149-185 (472)
204 KOG2615|consensus 96.5 0.0059 1.3E-07 52.6 5.8 124 159-286 86-217 (451)
205 TIGR00882 2A0105 oligosacchari 96.5 0.0008 1.7E-08 59.5 0.7 104 3-106 283-392 (396)
206 KOG3810|consensus 96.5 0.042 9.2E-07 46.9 10.4 199 22-256 90-296 (433)
207 PRK06814 acylglycerophosphoeth 96.5 0.0012 2.6E-08 66.6 1.5 80 25-104 332-417 (1140)
208 TIGR00806 rfc RFC reduced fola 96.4 0.041 8.8E-07 49.5 10.4 43 220-263 139-181 (511)
209 KOG0254|consensus 96.4 0.11 2.4E-06 47.8 13.8 65 220-286 167-233 (513)
210 TIGR00788 fbt folate/biopterin 96.3 0.0032 7E-08 57.1 3.5 86 25-111 349-447 (468)
211 TIGR00885 fucP L-fucose:H+ sym 96.1 0.043 9.4E-07 48.9 9.4 65 220-284 119-210 (410)
212 KOG2532|consensus 96.1 0.028 6.1E-07 50.8 8.2 65 220-284 153-218 (466)
213 PF00083 Sugar_tr: Sugar (and 95.9 0.0035 7.5E-08 56.4 1.6 108 6-113 318-440 (451)
214 PRK11128 putative 3-phenylprop 95.9 0.0013 2.9E-08 57.9 -1.2 100 5-106 271-376 (382)
215 TIGR00792 gph sugar (Glycoside 95.9 0.004 8.6E-08 55.7 1.6 81 4-84 287-375 (437)
216 PF11700 ATG22: Vacuole efflux 95.8 0.003 6.4E-08 57.3 0.7 106 5-111 350-469 (477)
217 PF06963 FPN1: Ferroportin1 (F 95.8 0.79 1.7E-05 41.0 15.9 74 157-260 249-322 (432)
218 KOG2504|consensus 95.6 0.00077 1.7E-08 61.5 -3.9 105 5-110 366-476 (509)
219 PTZ00207 hypothetical protein; 95.5 0.24 5.2E-06 46.2 11.8 62 220-283 145-206 (591)
220 PF07672 MFS_Mycoplasma: Mycop 95.2 0.12 2.5E-06 42.4 7.7 48 59-106 2-59 (267)
221 KOG2533|consensus 95.2 0.019 4.1E-07 52.2 3.4 68 220-287 159-232 (495)
222 PRK09848 glucuronide transport 95.1 0.0064 1.4E-07 54.8 0.3 80 4-83 294-382 (448)
223 PF03219 TLC: TLC ATP/ADP tran 95.1 0.69 1.5E-05 42.2 13.1 35 49-83 166-200 (491)
224 PF01306 LacY_symp: LacY proto 95.1 0.0018 3.8E-08 57.1 -3.3 111 3-113 288-404 (412)
225 TIGR00883 2A0106 metabolite-pr 95.1 0.067 1.5E-06 46.7 6.7 65 220-285 121-193 (394)
226 PF06813 Nodulin-like: Nodulin 95.0 0.052 1.1E-06 44.7 5.3 61 220-282 121-182 (250)
227 KOG0253|consensus 94.9 0.0048 1E-07 53.0 -1.0 104 7-111 414-520 (528)
228 COG3104 PTR2 Dipeptide/tripept 94.9 0.019 4.2E-07 51.2 2.6 63 220-282 142-206 (498)
229 COG0477 ProP Permeases of the 94.9 0.0064 1.4E-07 50.7 -0.4 88 15-102 80-178 (338)
230 KOG3762|consensus 94.6 0.023 4.9E-07 51.3 2.4 100 7-106 439-544 (618)
231 TIGR00805 oat sodium-independe 94.5 0.11 2.3E-06 49.2 6.8 65 220-285 197-283 (633)
232 KOG3762|consensus 94.5 0.18 3.9E-06 45.7 7.7 61 220-280 484-545 (618)
233 KOG0569|consensus 94.4 0.14 3.1E-06 46.3 6.9 70 43-113 384-458 (485)
234 KOG0255|consensus 94.4 0.52 1.1E-05 43.4 11.0 63 220-286 196-258 (521)
235 COG2270 Permeases of the major 94.3 0.015 3.4E-07 50.8 0.6 109 3-112 317-431 (438)
236 PF00854 PTR2: POT family; In 94.1 0.02 4.2E-07 50.3 1.0 79 28-106 34-120 (372)
237 PRK10133 L-fucose transporter; 94.0 0.69 1.5E-05 41.7 10.6 36 220-255 142-177 (438)
238 KOG2816|consensus 94.0 0.73 1.6E-05 41.7 10.6 73 220-292 137-209 (463)
239 COG3202 ATP/ADP translocase [E 93.7 2.5 5.3E-05 38.2 13.1 58 49-106 170-242 (509)
240 PF03092 BT1: BT1 family; Int 93.7 0.8 1.7E-05 41.2 10.5 62 224-286 118-179 (433)
241 TIGR01272 gluP glucose/galacto 93.7 0.18 3.8E-06 43.2 5.9 68 220-287 35-119 (310)
242 PRK11462 putative transporter; 92.6 7.7 0.00017 35.2 15.3 60 226-285 141-207 (460)
243 PF05631 DUF791: Protein of un 92.6 0.46 9.9E-06 41.0 6.7 94 20-113 114-220 (354)
244 KOG3098|consensus 92.1 2.2 4.7E-05 38.5 10.5 79 3-82 79-157 (461)
245 TIGR00896 CynX cyanate transpo 92.0 7.5 0.00016 33.6 15.0 53 221-274 113-167 (355)
246 PF05978 UNC-93: Ion channel r 91.9 0.015 3.4E-07 44.0 -2.6 61 22-82 84-144 (156)
247 PF02487 CLN3: CLN3 protein; 91.5 0.012 2.6E-07 51.6 -4.0 67 19-85 327-393 (402)
248 PF02487 CLN3: CLN3 protein; 91.5 0.18 3.9E-06 44.4 3.2 98 11-113 96-199 (402)
249 PF12832 MFS_1_like: MFS_1 lik 90.7 3.3 7.2E-05 27.1 9.2 60 185-268 13-72 (77)
250 PF06813 Nodulin-like: Nodulin 90.2 0.26 5.6E-06 40.6 2.8 86 26-113 95-185 (250)
251 KOG2325|consensus 89.4 7.7 0.00017 35.3 11.5 111 170-286 102-233 (488)
252 KOG0252|consensus 89.3 0.14 3E-06 45.6 0.5 108 5-113 379-501 (538)
253 PF03209 PUCC: PUCC protein; 87.3 0.36 7.8E-06 42.4 1.9 86 21-106 295-395 (403)
254 PF13347 MFS_2: MFS/sugar tran 86.8 1.4 3E-05 39.4 5.4 65 220-284 128-200 (428)
255 PRK09669 putative symporter Ya 85.1 4.5 9.8E-05 36.3 7.9 66 220-285 134-207 (444)
256 TIGR00926 2A1704 Peptide:H+ sy 82.3 0.97 2.1E-05 42.9 2.4 77 30-106 88-179 (654)
257 PF00854 PTR2: POT family; In 81.8 2.9 6.3E-05 36.7 5.1 56 226-281 67-122 (372)
258 COG0738 FucP Fucose permease [ 81.7 12 0.00026 33.2 8.5 72 220-291 129-220 (422)
259 PRK10429 melibiose:sodium symp 77.9 55 0.0012 29.7 14.8 66 220-285 131-204 (473)
260 COG2807 CynX Cyanate permease 77.0 36 0.00079 29.9 9.9 71 187-279 112-183 (395)
261 COG3462 Predicted membrane pro 73.4 12 0.00025 26.1 4.9 61 86-146 48-111 (117)
262 PF04281 Tom22: Mitochondrial 71.4 6.6 0.00014 28.9 3.6 64 213-285 53-116 (137)
263 COG2211 MelB Na+/melibiose sym 71.2 8.8 0.00019 34.8 5.1 65 220-284 137-209 (467)
264 KOG3880|consensus 69.3 0.75 1.6E-05 38.9 -1.8 72 14-85 329-400 (409)
265 PF11151 DUF2929: Protein of u 69.2 20 0.00043 22.0 4.8 45 68-113 7-56 (57)
266 TIGR00926 2A1704 Peptide:H+ sy 68.3 22 0.00047 34.0 7.4 52 228-279 121-179 (654)
267 TIGR00986 3a0801s05tom22 mitoc 59.9 14 0.00031 27.3 3.5 65 213-286 51-115 (145)
268 TIGR02978 phageshock_pspC phag 57.9 50 0.0011 23.8 6.0 30 86-115 30-64 (121)
269 COG1288 Predicted membrane pro 57.4 72 0.0016 28.7 7.8 21 86-106 217-237 (481)
270 KOG4686|consensus 57.4 12 0.00025 31.8 3.0 74 33-106 358-440 (459)
271 COG1422 Predicted membrane pro 57.3 95 0.0021 24.6 9.0 26 74-99 33-58 (201)
272 COG5336 Uncharacterized protei 57.3 51 0.0011 23.2 5.5 35 226-260 37-71 (116)
273 PF10183 ESSS: ESSS subunit of 55.5 25 0.00055 24.6 4.1 28 86-113 58-85 (105)
274 PF01733 Nucleoside_tran: Nucl 54.7 4 8.7E-05 34.8 -0.1 61 23-83 244-304 (309)
275 PRK10697 DNA-binding transcrip 54.1 16 0.00034 26.2 2.9 19 97-115 51-69 (118)
276 PF06645 SPC12: Microsomal sig 53.2 34 0.00075 22.3 4.2 45 66-113 11-57 (76)
277 KOG0637|consensus 52.9 40 0.00088 30.5 5.7 45 45-89 160-206 (498)
278 KOG2563|consensus 51.2 17 0.00036 32.8 3.2 39 220-258 165-203 (480)
279 TIGR00769 AAA ADP/ATP carrier 49.5 51 0.0011 30.2 6.1 37 220-256 154-190 (472)
280 PRK09609 hypothetical protein; 48.8 1.7E+02 0.0037 25.0 8.6 16 68-83 48-63 (312)
281 PRK11875 psbT photosystem II r 42.9 45 0.00097 17.4 2.7 22 90-114 7-28 (31)
282 PF04281 Tom22: Mitochondrial 39.9 57 0.0012 24.1 4.0 37 51-87 59-95 (137)
283 TIGR00986 3a0801s05tom22 mitoc 38.5 61 0.0013 24.1 3.9 38 51-88 57-94 (145)
284 PF05631 DUF791: Protein of un 38.3 2.8E+02 0.006 24.4 16.3 48 241-288 173-222 (354)
285 COG3817 Predicted membrane pro 38.2 88 0.0019 25.8 5.1 79 220-299 78-163 (313)
286 TIGR00939 2a57 Equilibrative N 37.4 38 0.00082 30.6 3.4 83 26-114 105-200 (437)
287 CHL00031 psbT photosystem II p 36.9 58 0.0013 17.3 2.6 23 90-115 7-29 (33)
288 TIGR00939 2a57 Equilibrative N 35.8 19 0.00041 32.5 1.2 59 25-83 370-428 (437)
289 KOG3574|consensus 34.8 3.5E+02 0.0075 24.5 9.2 39 220-258 394-432 (510)
290 PF04024 PspC: PspC domain; I 34.4 69 0.0015 19.9 3.2 28 86-113 30-60 (61)
291 TIGR02230 ATPase_gene1 F0F1-AT 34.1 1.5E+02 0.0032 20.6 5.1 39 67-105 47-94 (100)
292 COG0861 TerC Membrane protein 33.2 1.9E+02 0.0041 24.0 6.5 51 220-272 41-91 (254)
293 PF01733 Nucleoside_tran: Nucl 33.0 14 0.00031 31.4 0.0 73 36-114 6-88 (309)
294 PF10183 ESSS: ESSS subunit of 32.9 52 0.0011 23.0 2.8 36 254-289 53-88 (105)
295 PRK03612 spermidine synthase; 31.4 99 0.0021 28.7 5.1 48 230-277 144-192 (521)
296 PF06779 DUF1228: Protein of u 28.9 1.8E+02 0.004 19.4 8.5 48 189-260 9-56 (85)
297 KOG0055|consensus 28.0 7.2E+02 0.016 26.1 10.9 21 86-106 807-827 (1228)
298 PF15061 DUF4538: Domain of un 27.1 1.2E+02 0.0026 18.6 3.2 24 259-282 4-27 (58)
299 PRK09458 pspB phage shock prot 26.8 1E+02 0.0023 20.0 3.1 8 108-115 23-30 (75)
300 KOG2513|consensus 26.3 3.7E+02 0.008 25.5 7.6 61 57-118 523-602 (647)
301 PF01405 PsbT: Photosystem II 24.8 1.1E+02 0.0025 15.7 2.9 7 108-114 22-28 (29)
302 PF13000 Acatn: Acetyl-coenzym 24.5 1.8E+02 0.0039 27.0 5.2 31 52-82 143-173 (544)
303 KOG2881|consensus 24.1 3.8E+02 0.0082 22.4 6.5 22 254-275 263-284 (294)
304 PF02990 EMP70: Endomembrane p 23.8 4.7E+02 0.01 24.4 8.1 34 226-259 292-325 (521)
305 KOG3098|consensus 23.1 78 0.0017 28.8 2.8 59 26-85 352-410 (461)
306 PF08997 UCR_6-4kD: Ubiquinol- 22.7 64 0.0014 19.7 1.5 38 53-90 3-41 (56)
307 KOG4473|consensus 21.8 2.9E+02 0.0063 22.3 5.3 39 225-263 158-196 (247)
308 COG1972 NupC Nucleoside permea 21.1 2.9E+02 0.0063 24.5 5.6 53 237-291 169-223 (404)
309 TIGR03718 R_switched_Alx integ 20.8 5.4E+02 0.012 22.0 10.6 53 223-277 91-143 (302)
310 PF11712 Vma12: Endoplasmic re 20.1 3.7E+02 0.008 19.9 6.1 23 233-255 77-99 (142)
311 PF06166 DUF979: Protein of un 20.0 5.6E+02 0.012 21.9 9.8 38 262-299 122-159 (308)
312 PF06963 FPN1: Ferroportin1 (F 20.0 1.5E+02 0.0034 26.7 4.1 56 227-282 145-200 (432)
313 KOG3626|consensus 20.0 3.8E+02 0.0083 26.2 6.7 67 222-289 264-349 (735)
No 1
>KOG0569|consensus
Probab=100.00 E-value=3.4e-40 Score=288.71 Aligned_cols=284 Identities=27% Similarity=0.382 Sum_probs=249.7
Q ss_pred ccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hh
Q psy16653 15 GVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TY 87 (301)
Q Consensus 15 ~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~W 87 (301)
++....+...+.+..++++|++.|+.+|......+.|+.|.+|++.||....+.+.+..+|.+++..++.. .|
T Consensus 104 ~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W 183 (485)
T KOG0569|consen 104 ALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW 183 (485)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch
Confidence 34455556678899999999999999999999999999999999999999999999999999999888754 79
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHh-cCChHHHHHHHHHhcCCCCChHHHHHHHHH--HHHHHhhccchhhhhh
Q psy16653 88 TVIAIGCLAVPILLLVLFFLVVPETPIYLMK-SGNNKKAEVSLRFYRGSRYDVPLELAAIQR--EIDAAARKKASFSDLV 164 (301)
Q Consensus 88 r~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 164 (301)
++.+.+..+++++.++... ++|||||||.. |||.+||++.++++|+++++.++..++.++ +.+.+++++.++++++
T Consensus 184 ~~l~~~~~i~~~~~l~~l~-~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~ 262 (485)
T KOG0569|consen 184 PYLLAFPLIPALLQLALLP-FLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLL 262 (485)
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHh
Confidence 9999999999999999998 99999999987 899999999999999987443332222222 2222333677899999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc--------
Q psy16653 165 SSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-------- 219 (301)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-------- 219 (301)
+++..|+...+++.+...+|++|.+.+.+|...++++.|++.+..... +.||++|
T Consensus 263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~ 342 (485)
T KOG0569|consen 263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISL 342 (485)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999999999999999999999999999999986654433 5666555
Q ss_pred --------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy16653 220 --------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTL 249 (301)
Q Consensus 220 --------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~ 249 (301)
.+|++|++.|+++.++...++|+.+++..+
T Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~ 422 (485)
T KOG0569|consen 343 SLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF 422 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999
Q ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhccC
Q psy16653 250 CFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGGE 300 (301)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~~ 300 (301)
.++++.+.+|. ..|+++.+.+.++.++.|.++||||+|+.+|+.++++++
T Consensus 423 ~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 423 AFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 99999999998 789999999999999999999999999999999988765
No 2
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.6e-39 Score=288.67 Aligned_cols=291 Identities=28% Similarity=0.439 Sum_probs=245.4
Q ss_pred ccccccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+.+.++..+..+++++.++++ +++.+.++|++.|++.|+..+..+.|+.|..|+++||+..++.+.+..+|.+++.
T Consensus 76 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 76 KPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5577889999999999999999 9999999999999999999999999999999999999999999999999999988
Q ss_pred Hhccc-----h---hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653 81 CLGLS-----T---YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA 152 (301)
Q Consensus 81 ~i~~~-----~---Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
.++.. + ||+.+.+..+++++.++... ++||||+|+..|+|.|||++.++++++.+.+ +++.++..++.++
T Consensus 156 ~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~-~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~-~~~~~~~~~~~~~ 233 (451)
T PF00083_consen 156 LIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRF-FLPESPRWLLSKGRDEEAEKVLRKLRGKEIE-DEEIEEIKAEKKE 233 (451)
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccceecccccccccccccccccccccc-ccccccccccccc
Confidence 87653 4 99999999999998888776 9999999999999999999999997766322 2222222222222
Q ss_pred HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhh
Q psy16653 153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDS 216 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~ 216 (301)
.++++.+++++++++.+++++.+.+.+...+++++.+.+.+|.+.++++.+.+.+ .... +.|+
T Consensus 234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
T PF00083_consen 234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDR 312 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 2222367888888876788888888888988899989999999999988877644 1111 2233
Q ss_pred ccc----------------------------------------------------------ccccCCcchhhhHHHHHHH
Q psy16653 217 LIS----------------------------------------------------------MFDCIPFQVKGIATGIAVA 238 (301)
Q Consensus 217 v~~----------------------------------------------------------~~e~~p~~~R~~~~~~~~~ 238 (301)
+++ .+|++|++.|+++.|++..
T Consensus 313 ~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~ 392 (451)
T PF00083_consen 313 FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYA 392 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccc
Confidence 222 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHh
Q psy16653 239 VNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQREL 297 (301)
Q Consensus 239 ~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~ 297 (301)
++++++++++.+.+.+.+..+....+.+++++++++.++.+++.||||++++||++++|
T Consensus 393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 99999999999999998887755788899999999999999999999999999999875
No 3
>KOG0254|consensus
Probab=100.00 E-value=7.4e-34 Score=258.25 Aligned_cols=294 Identities=30% Similarity=0.443 Sum_probs=249.9
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
+.+.++..++.+|+++++++++...++++|++.|+|.|+...+.+.|++|++|++.||...+..+....+|.+++++++.
T Consensus 120 ~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~ 199 (513)
T KOG0254|consen 120 KTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINY 199 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37788889999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred c------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHh---
Q psy16653 85 S------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRG-SRYDVPLELAAIQREIDAAA--- 154 (301)
Q Consensus 85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 154 (301)
. +||+.+.+..+++++..+..+ ++||||+|+.++|+.+++++.++++++ .+.+.+++.++++.....+.
T Consensus 200 ~~~~~~~~Wr~~~~~~~i~~~~~~~~~~-~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 278 (513)
T KOG0254|consen 200 GTSKVYAGWRIPLGLALIPAVILALGML-FLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVA 278 (513)
T ss_pred hhccCCccHHHHHHHHHHHHHHHHHHHH-hCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcc
Confidence 6 499999999999999999955 999999999999999999999999999 44555666655552221111
Q ss_pred hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhcc
Q psy16653 155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLI 218 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~ 218 (301)
+.+..++++++ |..+++..+++.++.++|++|.+.+.+|.+++++..|...+..... +.|+++
T Consensus 279 ~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~g 357 (513)
T KOG0254|consen 279 EGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFG 357 (513)
T ss_pred cccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12223556666 5588999999999999999999999999999999998875532221 445544
Q ss_pred c-------------------------------------------------------------ccccCCcchhhhHHHHHH
Q psy16653 219 S-------------------------------------------------------------MFDCIPFQVKGIATGIAV 237 (301)
Q Consensus 219 ~-------------------------------------------------------------~~e~~p~~~R~~~~~~~~ 237 (301)
+ .+|++|.+.|+.+.+++.
T Consensus 358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~ 437 (513)
T KOG0254|consen 358 RRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAV 437 (513)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHH
Confidence 4 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHH-HhheecccCCCCCHHHHHHHhccC
Q psy16653 238 AVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTV-FTFMVVPETKGKTLAQIQRELGGE 300 (301)
Q Consensus 238 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~~~~~~~~~~ 300 (301)
.++++.+.+....++.+.+..+....|..++..+.+..+ +.+++.||||++++||+++.+.++
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 999999999998888888776645678888888888777 789999999999999999987654
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.98 E-value=1.9e-32 Score=248.76 Aligned_cols=286 Identities=18% Similarity=0.189 Sum_probs=208.5
Q ss_pred ccccccccCccccchhhhhccCC------eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETR------TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 77 (301)
|+.+.+++.++.+++++++++++ +..++++|+++|++.|+.++..+.|++|++|+++||+..++.+.+..+|.+
T Consensus 86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~ 165 (502)
T TIGR00887 86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence 34666777888888888888776 678999999999999999999999999999999999999999999988888
Q ss_pred HHHHhcc----------------------------chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChH-HHHHH
Q psy16653 78 YLYCLGL----------------------------STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNK-KAEVS 128 (301)
Q Consensus 78 ~~~~i~~----------------------------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~-~a~~~ 128 (301)
+++.++. ++||++|.+.++++++..+..+ ++||||||+..|+|.+ ++.+.
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~-~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRL-TIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHhCcchHHHHHH
Confidence 7775531 1699999999999988877776 9999999999988874 57777
Q ss_pred HHHhcCCCCC-hHHHHHHHHHHHHHHhhccchhhhhhccch---hHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCC
Q psy16653 129 LRFYRGSRYD-VPLELAAIQREIDAAARKKASFSDLVSSRA---NLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGS 204 (301)
Q Consensus 129 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 204 (301)
+++.++.+.+ ..++.++.++ +++..+.+++++++++. +++.++.....++...+ .++....|.|.++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~ 320 (502)
T TIGR00887 245 MSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGY 320 (502)
T ss_pred HHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcC
Confidence 7777653221 1112111111 11111235777776431 22333333333333322 355677778999988877
Q ss_pred CCCcc---------------hh-h-------------Hhhhccc------------------------------------
Q psy16653 205 TLDPG---------------FS-Y-------------IQDSLIS------------------------------------ 219 (301)
Q Consensus 205 ~~~~~---------------~~-~-------------l~~~v~~------------------------------------ 219 (301)
+.+.. .. . +.|++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 400 (502)
T TIGR00887 321 SPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVL 400 (502)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 53210 00 0 3344333
Q ss_pred ----------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hCcchhHHHHHHHHHH
Q psy16653 220 ----------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------FGSAATFWIFTVCCVV 273 (301)
Q Consensus 220 ----------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------~~~~~~~~~~~~~~~~ 273 (301)
.+|++|++.|+++.|+.+.+++++++++|.+++++.+. .+...++.++++++++
T Consensus 401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 480 (502)
T TIGR00887 401 AQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFL 480 (502)
T ss_pred HHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999874 3444578888888887
Q ss_pred HHHHhheecccCCCCCHHHHHH
Q psy16653 274 GTVFTFMVVPETKGKTLAQIQR 295 (301)
Q Consensus 274 ~~~~~~~~~~et~~~~~~~~~~ 295 (301)
+.++. +++|||+++++||+++
T Consensus 481 ~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 481 GILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHh-eEeccCCCCCHHhhhC
Confidence 76654 5679999999999875
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.96 E-value=7.3e-29 Score=224.29 Aligned_cols=289 Identities=26% Similarity=0.385 Sum_probs=212.8
Q ss_pred ccccccccCccccchhhhhcc---------CC---eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKE---------TR---TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMF 71 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~---------~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~ 71 (301)
|+.+.++..+++++.+.++.+ ++ +..+++.|+++|++.|+..+....+++|++|+++||+.+++.+.+
T Consensus 85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~ 164 (479)
T PRK10077 85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA 164 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence 455666677777777766653 12 356789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-------------chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC
Q psy16653 72 LTLGILYLYCLGL-------------STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD 138 (301)
Q Consensus 72 ~~~G~~~~~~i~~-------------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~ 138 (301)
..+|.+++++++. .+||++|++.+++.++..+..+ ++||+|+|+..+++.+++++.+++.+..+ +
T Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~l~~s~~~l~~~~~~~~~~~~~~~~~~~~-~ 242 (479)
T PRK10077 165 IIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLY-FVPETPRYLMSRGKQEQAEGILRKIMGNT-L 242 (479)
T ss_pred HHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHH-cCCCCcHHHHHcCCHHHHHHHHHHHcCCh-h
Confidence 9999998876532 2899999999999988877665 89999999988999999888888776543 2
Q ss_pred hHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------
Q psy16653 139 VPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------ 212 (301)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------ 212 (301)
..++.++..+..++++.. .+..+.. ........+....+++..+.+...+|.|.+.++.|.+.+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~ 317 (479)
T PRK10077 243 ATQALQEIKHSLDHGRKT---GGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGV 317 (479)
T ss_pred HHHHHHHHHHHHHHhhhh---hhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Confidence 222222222221111111 1111111 11223333344455666677788889999988887764422211
Q ss_pred -----------Hhhhccc-----------------------------------------------------ccccCCcch
Q psy16653 213 -----------IQDSLIS-----------------------------------------------------MFDCIPFQV 228 (301)
Q Consensus 213 -----------l~~~v~~-----------------------------------------------------~~e~~p~~~ 228 (301)
+.|++++ ++|.+|++.
T Consensus 318 ~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 397 (479)
T PRK10077 318 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 397 (479)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence 3344332 799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhcc
Q psy16653 229 KGIATGIAVAVNWIGAFLVTLCFGFLV------RHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGG 299 (301)
Q Consensus 229 R~~~~~~~~~~~~~~~~i~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~ 299 (301)
|+++.|+.+.++++++++++.++|.+. +++++...|.++++.++++.++.+++.||||++++||+++.+++
T Consensus 398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 999999999999999999988887655 46777778888888888888888888999999999999988755
No 6
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.96 E-value=2.3e-29 Score=233.64 Aligned_cols=282 Identities=16% Similarity=0.167 Sum_probs=215.6
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.+++.++++++++++++++++.++++|++.|++.|+..++...+++|++|+++||+..++++.+..+|.++++.++
T Consensus 232 R~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888899999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred c-----------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC----hHH
Q psy16653 84 L-----------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD----VPL 141 (301)
Q Consensus 84 ~-----------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~----~~~ 141 (301)
. . +||+.+++.+++.++.+++.+ ++||||+|+..+|+.++|.+.++++++.|.. ..+
T Consensus 312 ~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~-~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~ 390 (742)
T TIGR01299 312 WAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALT-FMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEK 390 (742)
T ss_pred HHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhH
Confidence 1 1 699999999998888777766 8999999999999999999999999876532 111
Q ss_pred HH--HHHHHHHHHH-----h-hc------------------cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhH
Q psy16653 142 EL--AAIQREIDAA-----A-RK------------------KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYS 195 (301)
Q Consensus 142 ~~--~~~~~~~~~~-----~-~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 195 (301)
.+ +..+...+.+ + +. ..+++++|+.+ +++++++.+++|+...+ +++.+..|+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~-~yygl~~w~ 468 (742)
T TIGR01299 391 VFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGVWFTLSF-GYYGLSVWF 468 (742)
T ss_pred HHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 11 1111100000 0 00 01356677655 88899998888887766 489999999
Q ss_pred HHHHHhc------------------------------------------CCCC--------------------C------
Q psy16653 196 NDIFKSA------------------------------------------GSTL--------------------D------ 207 (301)
Q Consensus 196 ~~~~~~~------------------------------------------g~~~--------------------~------ 207 (301)
|.+++.. |+.. .
T Consensus 469 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (742)
T TIGR01299 469 PDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN 548 (742)
T ss_pred HHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhc
Confidence 9886542 0000 0
Q ss_pred -----------------------------------------cc------hh-h----------------Hhhhccc----
Q psy16653 208 -----------------------------------------PG------FS-Y----------------IQDSLIS---- 219 (301)
Q Consensus 208 -----------------------------------------~~------~~-~----------------l~~~v~~---- 219 (301)
.. .. . +.|++++
T Consensus 549 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l 628 (742)
T TIGR01299 549 CTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML 628 (742)
T ss_pred cchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 00 00 0 4555554
Q ss_pred --------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 --------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV 255 (301)
Q Consensus 220 --------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~ 255 (301)
++|++|++.|+++.|+.+..+++|++++|++.+.+.
T Consensus 629 ~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 629 AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999887
Q ss_pred HhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 256 RHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
+. +...++++.+++.++++++.++ +|||+++.+
T Consensus 709 ~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~l 741 (742)
T TIGR01299 709 GI-TKAAPILFASAALACGGLLALK-LPDTRGQVL 741 (742)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccccc
Confidence 65 4456777788877777766665 699998754
No 7
>KOG0253|consensus
Probab=99.96 E-value=5.9e-28 Score=199.55 Aligned_cols=279 Identities=14% Similarity=0.118 Sum_probs=209.8
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
+.+.+.....++...+.+.++||..+.+.|.+.|+|.|+ +|+..++-.|..|..+|+..+-.. ..+.+|.++...++.
T Consensus 144 ~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law 221 (528)
T KOG0253|consen 144 KGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAW 221 (528)
T ss_pred hhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHH
Confidence 445566667778899999999999999999999999999 999999999999999999988877 899999999888876
Q ss_pred c-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCC----------hHHHHHHHHHH
Q psy16653 85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYD----------VPLELAAIQRE 149 (301)
Q Consensus 85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~ 149 (301)
. ||||..+..++|..+.+...+ ++||||||+..+|+.++|.+.++|+.+.|.. ..++.++.+.+
T Consensus 222 ~vm~~~gwr~~l~~~~~pl~~~a~f~~-w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~ 300 (528)
T KOG0253|consen 222 GVMSNFGWRYLLFTSSTPLMFAARFLV-WVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESD 300 (528)
T ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHh-hcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhc
Confidence 5 999999999988877777777 9999999999999999999999999876542 11111211111
Q ss_pred HHH-----HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC---CCCC----cchhh-----
Q psy16653 150 IDA-----AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG---STLD----PGFSY----- 212 (301)
Q Consensus 150 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g---~~~~----~~~~~----- 212 (301)
..+ .++......+++. |+.||.++....+|+...++ +++.......+++.-. .... .....
T Consensus 301 ~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafs-yyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~ 378 (528)
T KOG0253|consen 301 LDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFS-YYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPL 378 (528)
T ss_pred hhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCc
Confidence 111 1223345566664 55888888877777765444 3333333333333211 0000 00000
Q ss_pred -------------------------Hhhhccc------------------------------------------------
Q psy16653 213 -------------------------IQDSLIS------------------------------------------------ 219 (301)
Q Consensus 213 -------------------------l~~~v~~------------------------------------------------ 219 (301)
+.|++++
T Consensus 379 s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvY 458 (528)
T KOG0253|consen 379 SVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVY 458 (528)
T ss_pred cchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEe
Confidence 4455555
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
..|+||+..|+++.|.+...+++|+++.|++. +........+..+++.+++++.+..+++--|||+|++
T Consensus 459 tPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 459 TPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred cCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 99999999999999999999999999999888 4444455578889999999999999998889999874
No 8
>TIGR00898 2A0119 cation transport protein.
Probab=99.96 E-value=2.3e-28 Score=222.50 Aligned_cols=278 Identities=17% Similarity=0.204 Sum_probs=207.4
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.++..+.+++.++.+++++++.+++.|++.|++.|+..+....++.|++|+++|++..++.+.+..+|.++++.++
T Consensus 157 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 236 (505)
T TIGR00898 157 KKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVA 236 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCCh-HHHHHHHH-HHHHHHhhccch
Q psy16653 84 LS--TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDV-PLELAAIQ-REIDAAARKKAS 159 (301)
Q Consensus 84 ~~--~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~ 159 (301)
.. +||+.|++.+++.++..+..+ ++||||+|+..+++.+++.+.+++..+.+... .++..+.+ ++..++++++.+
T Consensus 237 ~~~~~wr~~~~~~~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (505)
T TIGR00898 237 YFIPDWRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYS 315 (505)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCc
Confidence 76 899999999999988887776 89999999999999999999888876654321 11111111 111111122357
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhccc----
Q psy16653 160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLIS---- 219 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~~---- 219 (301)
+++++++|..++.++.....++...+. ++....+.+ +.+.+ ..... +.|++++
T Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~--~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~ 388 (505)
T TIGR00898 316 FLDLFRTPNLRKTTLCLMMLWFTTAFS-YYGLVLDLG----NLGGN--IYLDLFISGLVELPAKLITLLLIDRLGRRYTM 388 (505)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHH-HHHHhcccc----ccCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 788998886666665554444432221 222222222 11211 11000 2333322
Q ss_pred ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253 (301)
Q Consensus 220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~ 253 (301)
.+|++|++.|+++.|+.+.+++++++++|.+.+
T Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~- 467 (505)
T TIGR00898 389 AASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY- 467 (505)
T ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-
Confidence 789999999999999999999999999999988
Q ss_pred HHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653 254 LVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ 292 (301)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 292 (301)
+ +..+...++.+++++.+++.++.+ ++|||++++++|
T Consensus 468 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 468 L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504 (505)
T ss_pred H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCCC
Confidence 3 445666788888888888776665 479999988764
No 9
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.94 E-value=2.6e-25 Score=200.28 Aligned_cols=289 Identities=27% Similarity=0.371 Sum_probs=211.7
Q ss_pred cccccccccCccccchhhhhccCC---eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETR---TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
+|+.+.++..+++++.++.....+ ++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|.+++
T Consensus 100 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~ 179 (481)
T TIGR00879 100 RKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA 179 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHH
Confidence 356667778888888888855443 44799999999999999999999999999999999999999999999999999
Q ss_pred HHhc---cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHH---HHH
Q psy16653 80 YCLG---LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAA---IQR 148 (301)
Q Consensus 80 ~~i~---~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~ 148 (301)
+.++ .. +||+.|++.++..++..+..+ ++||+|+++..+++.+++.+..++..+.+.+..+..+. ...
T Consensus 180 ~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (481)
T TIGR00879 180 YGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLF-FLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI 258 (481)
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 9988 32 999999997777776666665 89999999888888887777666655443222221111 111
Q ss_pred HHHHH-hhccchhhhhhccch-hHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh--------------
Q psy16653 149 EIDAA-ARKKASFSDLVSSRA-NLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-------------- 212 (301)
Q Consensus 149 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------------- 212 (301)
....+ +..+..+.+.++... .+++.+....+..+.+..+.+.+.++.|.++++.|++.+.....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 338 (481)
T TIGR00879 259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFV 338 (481)
T ss_pred HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11111 111222334443211 23444554555555555556677888999988887764222111
Q ss_pred ---Hhhhcc----------------------------------c-------------------------ccccCCcchhh
Q psy16653 213 ---IQDSLI----------------------------------S-------------------------MFDCIPFQVKG 230 (301)
Q Consensus 213 ---l~~~v~----------------------------------~-------------------------~~e~~p~~~R~ 230 (301)
+.|+++ . ..|.+|++.|+
T Consensus 339 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (481)
T TIGR00879 339 AIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP 418 (481)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence 111110 1 58999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653 231 IATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ 292 (301)
Q Consensus 231 ~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 292 (301)
++.++.+.+.++++++++.+.+.+.++.+++..|++.+++++++.++.+++.||+++++.++
T Consensus 419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 99999999999999999999999999989988999999999999988888899999887654
No 10
>KOG0255|consensus
Probab=99.93 E-value=5.2e-25 Score=201.08 Aligned_cols=285 Identities=15% Similarity=0.060 Sum_probs=205.9
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|..+..++.+..++++.++++++++.+++.|++.|++.++...++..+++|+.++++|+....+....+..|.+..+..+
T Consensus 148 k~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 148 KPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999999999999999995555555555555555
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCC---CChHHHHHHHHHHH-HHH--hh
Q psy16653 84 LS--TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSR---YDVPLELAAIQREI-DAA--AR 155 (301)
Q Consensus 84 ~~--~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~--~~ 155 (301)
.. +||+.+++..+++++.+++.+ +.||||||+..+||.+++.+.+++..+.| .+..+......... .+. .+
T Consensus 228 ~~~~~Wr~~~~~~~~~~~~~~~~~~-l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (521)
T KOG0255|consen 228 YITRDWRWLFWIISIPSGLFLLLWF-LPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTE 306 (521)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH-ccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccC
Confidence 55 899999999999999888854 77799999999999999999999987654 22222222221111 111 12
Q ss_pred ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh----------------Hhhhccc
Q psy16653 156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY----------------IQDSLIS 219 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~----------------l~~~v~~ 219 (301)
++..+.++++.|..+++++.....++..... +++..+. ..+. +.+..... ..++.++
T Consensus 307 ~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~-y~gl~~~----~~~l--g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR 379 (521)
T KOG0255|consen 307 PKISFLDLFRTPRLRYRTLYLLFIWFVFSLV-YYGLSLN----VSGL--GGNIYLNFTLSGLVELPAYFRNGLLLPEFGR 379 (521)
T ss_pred CCCchhhhhcCHHHHHHHHHHHHHHHHHhHH-HHhhhhh----hhhc--CchHHHHHHHHHHHHhhHHHHHHHHHHHhCc
Confidence 3356888999987788888777777532221 1111111 1111 11111110 1111111
Q ss_pred ---------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653 220 ---------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT 248 (301)
Q Consensus 220 ---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~ 248 (301)
.+|++|+..|+++.+.+....+++++++|
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap 459 (521)
T KOG0255|consen 380 RPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAP 459 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999
Q ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHh
Q psy16653 249 LCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQREL 297 (301)
Q Consensus 249 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~ 297 (301)
++...... ......+.+++....+..++...++|||+++++.+-.++-
T Consensus 460 ~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~ 507 (521)
T KOG0255|consen 460 LFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDA 507 (521)
T ss_pred HHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHH
Confidence 87654443 3333344446778888888887889999999986644433
No 11
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.93 E-value=3.1e-25 Score=200.99 Aligned_cols=260 Identities=14% Similarity=0.126 Sum_probs=181.8
Q ss_pred ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
|+.+.+++.+++++++++++++++.+ +++.|+++|++.|+.++.+..+++|++|+++||+..++.+.+..+|
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G 166 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAG 166 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 56788899999999999999999875 8899999999999999999999999999999999999999888888
Q ss_pred HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653 76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE 142 (301)
Q Consensus 76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (301)
.+++..+. .+|||+.|++.++++++..++.. .+||||+|...+++.++.. ++ .
T Consensus 167 ~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~-~~~esp~~~~~~~~~~~~~-------~~------~ 232 (490)
T PRK10642 167 FVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRH-ALEETPAFQQHVDKLEQGD-------RE------G 232 (490)
T ss_pred HHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHH-cCCCChhHHHHHHhhhhhc-------cc------c
Confidence 77765432 12899999998877776666655 8999999864332211100 00 0
Q ss_pred HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653 143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY--------- 212 (301)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~--------- 212 (301)
..+.++.++++++++ +++.........+. ....++.+..|+|.++++ .|++.......
T Consensus 233 ---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ 300 (490)
T PRK10642 233 ---------LQDGPKVSFKEIATK--HWRSLLTCIGLVIA-TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGML 300 (490)
T ss_pred ---------ccccccCCHHHHHHH--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 000112345566653 23334433333232 223466778889998865 36553221111
Q ss_pred --------Hhhhccc---------------------------------------------------ccccCCcchhhhHH
Q psy16653 213 --------IQDSLIS---------------------------------------------------MFDCIPFQVKGIAT 233 (301)
Q Consensus 213 --------l~~~v~~---------------------------------------------------~~e~~p~~~R~~~~ 233 (301)
+.|++++ .+|++|++.|+++.
T Consensus 301 ~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 301 FVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHH
Confidence 3344333 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 234 GIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 234 ~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
|+.+..+++++.++|.+.+++.+..+ ++.++.+..+.++++.+..++ .||++++..
T Consensus 381 g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~~ 437 (490)
T PRK10642 381 AAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRPL 437 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCCC
Confidence 99888888889999999999887654 455555555666666555544 699876544
No 12
>KOG0252|consensus
Probab=99.91 E-value=2.3e-25 Score=189.37 Aligned_cols=279 Identities=19% Similarity=0.187 Sum_probs=199.2
Q ss_pred ccCccccchhhhhccC-------CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 10 ALPDGGVGYEINFKET-------RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 10 ~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
.+.+..+++++++.+. -.+++...|++.|+|.|+.||...+..+|.+-.++||...+..-....+|.+.+.++
T Consensus 120 ~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 120 ELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred HHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHH
Confidence 3444555565555432 234678899999999999999999999999999999999998777666666666655
Q ss_pred ccc--------------------hhHHHHHHHHHHHHHHHHHHhcccccchhHHH-hcCChHHHHHHHHHhcCCCCChHH
Q psy16653 83 GLS--------------------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLM-KSGNNKKAEVSLRFYRGSRYDVPL 141 (301)
Q Consensus 83 ~~~--------------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~-~~~~~~~a~~~~~~~~~~~~~~~~ 141 (301)
+.. =||..|.+..+|+++++.-++ .+|||++|-. ..++.++|.+..+|....
T Consensus 200 t~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl-~M~Et~~Y~al~~~~~~~a~~d~~k~~~~------ 272 (538)
T KOG0252|consen 200 ALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRL-KMPETARYTALVSKKLKQAAGDMKKVLSV------ 272 (538)
T ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchhHHHHhhcCHhhhhhcccccccc------
Confidence 321 499999999999999999988 9999999973 334444444221111111
Q ss_pred HHHHHHHHHHHHhhccc---hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------
Q psy16653 142 ELAAIQREIDAAARKKA---SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------ 212 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------ 212 (301)
++++.+........++. .+...+... +-++++-.+..|+..... +|....+...++++.|+..+....-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllDia-fy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA 350 (538)
T KOG0252|consen 273 DIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIA-FYGQNLFQSVIFSAIGVIPSANTYHELFKVA 350 (538)
T ss_pred ccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhhhh-hhccccHHHHHHHhhccCCCcchHHHHHHHH
Confidence 11110000000001111 133344333 446677777777776654 7788888899999887654443331
Q ss_pred --------------------Hhhhccc-----------------------------------------------------
Q psy16653 213 --------------------IQDSLIS----------------------------------------------------- 219 (301)
Q Consensus 213 --------------------l~~~v~~----------------------------------------------------- 219 (301)
++|.+++
T Consensus 351 ~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfiv 430 (538)
T KOG0252|consen 351 EGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIV 430 (538)
T ss_pred HHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEe
Confidence 3333333
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-----HFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQ 294 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~ 294 (301)
.+|.+|++.|+++.|+..+++..|++++...+.++.+ ..+.+.++++++.+++++.+..++ +||||++++||++
T Consensus 431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~~~leei~ 509 (538)
T KOG0252|consen 431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKGKSLEEIS 509 (538)
T ss_pred ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccccCHHHhc
Confidence 9999999999999999999999999999999999999 778888999999999988877766 7899999999987
Q ss_pred HHhc
Q psy16653 295 RELG 298 (301)
Q Consensus 295 ~~~~ 298 (301)
++.+
T Consensus 510 ~e~~ 513 (538)
T KOG0252|consen 510 NEEE 513 (538)
T ss_pred Chhh
Confidence 6543
No 13
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.89 E-value=3.1e-24 Score=181.44 Aligned_cols=263 Identities=11% Similarity=0.049 Sum_probs=199.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
||+.+.+++.+.++.+++.+++++...+.+.-+++|...|.-.|.....++.|+|++|||+..++++++-++|..+.+++
T Consensus 93 pr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~ 172 (448)
T COG2271 93 PRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLV 172 (448)
T ss_pred CceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred c--cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653 83 G--LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR 155 (301)
Q Consensus 83 ~--~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
. .. +||..|+++++.++++.+..++.++|+|+-. |- . +.++..++..+..+++++
T Consensus 173 ~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GL-----P----------~ie~~~~d~~e~~~~~~~ 234 (448)
T COG2271 173 ALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GL-----P----------PIEEYRGDPLEIYEEEKE 234 (448)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CC-----C----------CHHHhhcCchhhhhhhcc
Confidence 7 33 8999999999999999998887899999531 11 1 111111111111111111
Q ss_pred cc-chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhh
Q psy16653 156 KK-ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDS 216 (301)
Q Consensus 156 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~ 216 (301)
.+ .+.++.+.+...+++.+....+.........+.+..|.|.++.+. |++....... ++|+
T Consensus 235 ~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDk 314 (448)
T COG2271 235 NEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDK 314 (448)
T ss_pred CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 344444433323333333333333333334789999999999886 6664443332 4555
Q ss_pred ccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHH-
Q psy16653 217 LIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI- 242 (301)
Q Consensus 217 v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~- 242 (301)
+-+ +.|..|.+.-|++.|+...++++
T Consensus 315 lfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~ 394 (448)
T COG2271 315 LFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI 394 (448)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence 322 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653 243 GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 243 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
|+..+....+++.|++||.+.|+++.+.++++.++......
T Consensus 395 Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 395 GAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 88888988999999999999999998888888877666554
No 14
>PRK09952 shikimate transporter; Provisional
Probab=99.88 E-value=3.6e-22 Score=178.47 Aligned_cols=249 Identities=10% Similarity=0.060 Sum_probs=169.6
Q ss_pred ccccccccCccccchhhhhccCCee--------EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTV--------SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
|+.+.+++.+++++++++++++++. .+++.|+++|++.|+.++....++.|++|+++||+..+..+.+..+|
T Consensus 94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 5667778889999999999999987 48889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653 76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE 142 (301)
Q Consensus 76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (301)
.+++..+. .++||+.|++.+++.++...+.. .+||||+|...+++.++.+
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~-~~~es~~~~~~~~~~~~~~---------------- 236 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRN-GMEESAEFEQQQHEQAAAK---------------- 236 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHH-hCCCChhHHHHHhhccccc----------------
Confidence 98875442 13999999999988877666555 7899998753322111000
Q ss_pred HHHHHHHHHHHhhccchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchh-h-------
Q psy16653 143 LAAIQREIDAAARKKASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFS-Y------- 212 (301)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~-~------- 212 (301)
++.+. +.++++|..+ .......+. +..+.+....|.|.++++ .|.+...... .
T Consensus 237 -------------~~~~~~~~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~ 299 (438)
T PRK09952 237 -------------KRIPVIEALLRHPGAF---LKIIALRLC-ELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLS 299 (438)
T ss_pred -------------ccCCHHHHHHHchHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 00011 1233333221 111111111 222345556666666644 3443221000 0
Q ss_pred ---------Hhhhccc----------------------------------------------------ccccCCcchhhh
Q psy16653 213 ---------IQDSLIS----------------------------------------------------MFDCIPFQVKGI 231 (301)
Q Consensus 213 ---------l~~~v~~----------------------------------------------------~~e~~p~~~R~~ 231 (301)
+.||+++ .+|.+|++.|++
T Consensus 300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t 379 (438)
T PRK09952 300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS 379 (438)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence 3344322 789999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhh--CcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 232 ATGIAVAVNW-IGAFLVTLCFGFLVRHF--GSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 232 ~~~~~~~~~~-~~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
+.++.+..+. +++.++|.+.+++.+.. +|..++.+.+++++++.+..+. .+||++
T Consensus 380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~~~ 437 (438)
T PRK09952 380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKDNQR 437 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-cccccc
Confidence 9999877755 88999999999998854 3666666667777777666554 566543
No 15
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.88 E-value=9.3e-22 Score=175.64 Aligned_cols=246 Identities=16% Similarity=0.072 Sum_probs=167.0
Q ss_pred cccccccccCccccchhhhhccCCee--------EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTV--------SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL 74 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~ 74 (301)
.|+.+.+++.+++++++++++++++. .+++.|+++|++.|+.++....+++|++|+++||+..++.+.+...
T Consensus 92 rr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~ 171 (432)
T PRK10406 92 RKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIG 171 (432)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHH
Confidence 36678889999999999999999875 4889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHH
Q psy16653 75 GILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPL 141 (301)
Q Consensus 75 G~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 141 (301)
|.+++..+. .+|||++|++.++++++..++.. .+||+|++. +. +
T Consensus 172 G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~-~~~e~~~~~-------~~-~-------------- 228 (432)
T PRK10406 172 GQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRR-QLDETSQQE-------TR-A-------------- 228 (432)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHh-cCCCCchHH-------Hh-h--------------
Confidence 887776542 23899999999999888776665 789987531 00 0
Q ss_pred HHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh--------
Q psy16653 142 ELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-------- 212 (301)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-------- 212 (301)
+++..+++++++++.. ... ..........+++.+..|+|.++.+ .|.+.+.....
T Consensus 229 ------------~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~ 292 (432)
T PRK10406 229 ------------LKEAGSLKGLWRNRRA---FIM-VLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF 292 (432)
T ss_pred ------------hcccccHHHHHhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0011245566654421 111 1111222122356677888888765 45553221111
Q ss_pred ---------Hhhhccc----------------------------------------------------ccccCCcchhhh
Q psy16653 213 ---------IQDSLIS----------------------------------------------------MFDCIPFQVKGI 231 (301)
Q Consensus 213 ---------l~~~v~~----------------------------------------------------~~e~~p~~~R~~ 231 (301)
+.|++++ .+|.+|++.|++
T Consensus 293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t 372 (432)
T PRK10406 293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRAL 372 (432)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccch
Confidence 3333222 689999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 232 ATGIAVAVNWIG-AFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 232 ~~~~~~~~~~~~-~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
+.|+++.++++. +...|.+.+.+ +..| +...+++.++.++++.+..++ .++++|++
T Consensus 373 ~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~~ 430 (432)
T PRK10406 373 GVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKGM 430 (432)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH--hhhccccc
Confidence 999999887763 45577777744 5556 434455555556666555544 33445543
No 16
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.88 E-value=1.8e-22 Score=175.94 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=159.9
Q ss_pred CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653 25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI 99 (301)
Q Consensus 25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~ 99 (301)
+++..+++.|+++|++.|. .+.....++|++|+++|++.+++.+.+..+|.++++.++.. |||+.|++.+++++
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~ 155 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAA 155 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 7899999999999999985 56677777999999999999999999999999999888765 99999999999988
Q ss_pred HHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHH
Q psy16653 100 LLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGL 179 (301)
Q Consensus 100 ~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
+..++.++++||+|++. ++ ..+.+ + . ..++++++++|..+.....
T Consensus 156 ~~~~~~~~~lp~~p~~~---~~--------------~~~~~-------~---~----~~~~~~ll~~~~~~~~~~~---- 200 (368)
T TIGR00903 156 AGIILVLAALPALPFQA---AE--------------GFGFK-------D---A----VKEFGALAGRKDLWIIGAI---- 200 (368)
T ss_pred HHHHHHHHHcCCCCCCC---CC--------------CcchH-------H---H----HHHHHHHHcChhHHHHHHH----
Confidence 87777776899998652 10 00000 0 0 0135677777643222222
Q ss_pred HHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-------------Hhhhccc---------------------------
Q psy16653 180 MVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-------------IQDSLIS--------------------------- 219 (301)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------------l~~~v~~--------------------------- 219 (301)
.+......+.+.+|+|+++++.|++....... +.|++.+
T Consensus 201 -~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~ 279 (368)
T TIGR00903 201 -LGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN 279 (368)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 22223346788899999998877653211111 2232211
Q ss_pred -------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q psy16653 220 -------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVG 274 (301)
Q Consensus 220 -------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (301)
.+|.+|++.|+++.|+.+..++++++.+|.+.+.+.. +....|.++++..+++
T Consensus 280 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~ 357 (368)
T TIGR00903 280 RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIA 357 (368)
T ss_pred cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999987773 6667788888888887
Q ss_pred HHHhh
Q psy16653 275 TVFTF 279 (301)
Q Consensus 275 ~~~~~ 279 (301)
.+...
T Consensus 358 ~~~~~ 362 (368)
T TIGR00903 358 FAIAL 362 (368)
T ss_pred HHHHH
Confidence 77764
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.86 E-value=3.8e-22 Score=178.19 Aligned_cols=263 Identities=11% Similarity=0.008 Sum_probs=182.6
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.+++.+++++.++...+++++.+++.|++.|++.|...+....++.|++|+++||+.+++++.+..+|..+++.+
T Consensus 87 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 166 (434)
T PRK11663 87 ARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLV 166 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
... +||+.|++.+++.++..+...+++||+|++.......++.+ +.. + ..++.++++
T Consensus 167 ~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~-~------~~~~~~~~~ 228 (434)
T PRK11663 167 VGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-----------DAL-E------LAQQQEGAG 228 (434)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-----------ccc-c------cchhccccC
Confidence 654 99999999998887665555547899886531111000000 000 0 000000001
Q ss_pred chhhh-----hhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hh
Q psy16653 158 ASFSD-----LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQ 214 (301)
Q Consensus 158 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~ 214 (301)
.++++ .++++..+. . ... ..........+..|+|.++.+ .|++....... +.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~ 303 (434)
T PRK11663 229 LSRKEILTKYVLLNPYIWL-L---SFS-YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGS 303 (434)
T ss_pred CChhhhHHHHHhcChHHHH-H---HHH-HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 11222 333442221 1 111 111122244566788888854 45553222111 44
Q ss_pred hhcc---c--------------------------------------------------ccccCCcchhhhHHHHHHHHHH
Q psy16653 215 DSLI---S--------------------------------------------------MFDCIPFQVKGIATGIAVAVNW 241 (301)
Q Consensus 215 ~~v~---~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~ 241 (301)
||+. + ..|.+|++.|+++.|+.+..++
T Consensus 304 dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 383 (434)
T PRK11663 304 DKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAY 383 (434)
T ss_pred HHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHH
Confidence 5541 0 5799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653 242 IGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK 288 (301)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 288 (301)
+++.++|.+.+++.++.|++..|...+++++++.+..+...++++++
T Consensus 384 ~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 384 LGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 99999999999999999999999888888888877666655555443
No 18
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.85 E-value=8e-22 Score=174.90 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=173.3
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+..++.++++++++.+++++++.+++.|+++|++.|...|....++.|++|+++||+.+++++.+..+|.++++.+
T Consensus 72 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~ 151 (412)
T TIGR02332 72 ARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLIL 151 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888999999999999999999999999999999999999999999999999999999999999999888888766
Q ss_pred cc-----------chhHHHHHHHHHHHHHHHHHHhcccccchh---HHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHH
Q psy16653 83 GL-----------STYTVIAIGCLAVPILLLVLFFLVVPETPI---YLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQR 148 (301)
Q Consensus 83 ~~-----------~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~---~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 148 (301)
+. .|||+.|++.++++++..++.++++||+|+ |+.. ++.+...++.+..+.+.++..+..++
T Consensus 152 ~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (412)
T TIGR02332 152 SGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLTLEQPEGAFAH 227 (412)
T ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccccccccccccc
Confidence 42 289999999999998877766668899994 3211 11111111111111000000000000
Q ss_pred HHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC--CCCCcchh-h-------------
Q psy16653 149 EIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG--STLDPGFS-Y------------- 212 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~-~------------- 212 (301)
+.......+++++ +|..+ ...+.+.....+++.+..|+|.++++.+ .+...... .
T Consensus 228 ---~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~ 298 (412)
T TIGR02332 228 ---AAMPQRSMLREIF-TPAIM-----LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIW 298 (412)
T ss_pred ---ccccHHHHHHHhc-ChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHH
Confidence 0000011233333 23221 2222233333446778899999998853 33111111 0
Q ss_pred ---Hhhhccc-------------------------------------------------ccccCCcchhhhHHHHHHHHH
Q psy16653 213 ---IQDSLIS-------------------------------------------------MFDCIPFQVKGIATGIAVAVN 240 (301)
Q Consensus 213 ---l~~~v~~-------------------------------------------------~~e~~p~~~R~~~~~~~~~~~ 240 (301)
+.|++++ ..|.+|++.|+++.|+.+..+
T Consensus 299 ~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~ 378 (412)
T TIGR02332 299 WSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATG 378 (412)
T ss_pred HHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhh
Confidence 3444332 467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-cchhHHHHHHHH
Q psy16653 241 WIGAFLVTLCFGFLVRHFG-SAATFWIFTVCC 271 (301)
Q Consensus 241 ~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~ 271 (301)
+++++++|.+.+.+.+..| |+..+.+.+++.
T Consensus 379 ~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 379 NIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 9999999999999998875 766666555543
No 19
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.83 E-value=1.4e-20 Score=167.88 Aligned_cols=258 Identities=11% Similarity=0.065 Sum_probs=172.0
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++.+++++++.++++|++.|++.|..++....++.|++|+++|++..++.+.+..+|.++++.+
T Consensus 82 ~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l 161 (426)
T PRK12307 82 RKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF 161 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence 45667778888899999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
... +||+.|++..++.++.+.+.. ..||++++...+.+. +++..++ ..+...
T Consensus 162 ~~~l~~~~~w~~~f~i~~~~~~~~~~~~~-~~p~~~~~~~~~~~~------------~~~~~~~----------~~~~~~ 218 (426)
T PRK12307 162 MPSFAEAYGWRAAFFVGLLPVLLVIYIRA-RAPESKEWEEAKLSG------------KGKHSQS----------AWSVFS 218 (426)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHHHHHH-HCCCChHHHHhhhhc------------ccccccc----------chhhhh
Confidence 532 999999986655554444433 567776543211100 0000000 000011
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS- 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~- 219 (301)
.+++++++++..+ .......+.+. .+...+.+..+.|.++++.|.+.+..... +.|++++
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 296 (426)
T PRK12307 219 LSMKGLFNRAQFP-LTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK 296 (426)
T ss_pred HHHHHHHhhchHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 2456677766333 22222222222 22223346677888888776542221110 3333322
Q ss_pred -------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy16653 220 -------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLC 250 (301)
Q Consensus 220 -------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~ 250 (301)
+.|.+|++.|+++.|+.+.++++++.++|.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 297 KTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH
Confidence 6899999999999999999999999999999
Q ss_pred HHHHHHhhCcchh-HHHHHHHHHHHHHHhheecccC
Q psy16653 251 FGFLVRHFGSAAT-FWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 251 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~et 285 (301)
.+++.++.|+... +++.++.+.++.....+..|++
T Consensus 377 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 377 ATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 9999998886433 3333333444443333444554
No 20
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.83 E-value=6.3e-21 Score=171.95 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=173.6
Q ss_pred cccccccccCccccchhhh-----hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEIN-----FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~-----~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 77 (301)
+|+++.+++.+++++.+.. +.+++++.+++.|+++|++.|...|....+++||+|+++||+++++++.+..+|.+
T Consensus 93 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~ 172 (467)
T PRK09556 93 TKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGA 172 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhh
Confidence 4555555555555555444 44789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccc--------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653 78 YLYCLGLS--------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE 149 (301)
Q Consensus 78 ~~~~i~~~--------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
++..+... +||..|.+.+++++++.+..+++.+|+|.....+ +.++ .. +.+.+.+++ .
T Consensus 173 l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~-~~~~---~~----~~~~~~~~~------~ 238 (467)
T PRK09556 173 GAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWG-KAEE---IF----GEPISEEDK------E 238 (467)
T ss_pred HHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCC-Chhh---cc----cCccchhhh------c
Confidence 98776532 5999999999988887776665678877431110 1111 00 000000000 0
Q ss_pred HHHHhhc-cchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh--------------
Q psy16653 150 IDAAARK-KASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-------------- 212 (301)
Q Consensus 150 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-------------- 212 (301)
.++++.+ ...+ +..+++|..+.. ....++ .....+.+.+|+|.++++ .|++.......
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~-~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~ 313 (467)
T PRK09556 239 TESTDMTKWQIFVEYVLKNPVIWLL----CFANIF-LYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLL 313 (467)
T ss_pred cccccCcHHHHHHHHHHcChHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0011 224555533322 222222 222245678899988876 46553222111
Q ss_pred ---Hhhhccc--------------------------------------------------ccccCCcchhhhHHHHHHHH
Q psy16653 213 ---IQDSLIS--------------------------------------------------MFDCIPFQVKGIATGIAVAV 239 (301)
Q Consensus 213 ---l~~~v~~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~ 239 (301)
+.|++++ ..|.+|++.||++.|+.+..
T Consensus 314 ~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~ 393 (467)
T PRK09556 314 WGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTF 393 (467)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 4444332 56999999999999999999
Q ss_pred HHH-HHHHHHHHHHHHHH------------hhCcchhHHHHHHHHHHHHHHhheec-ccCC
Q psy16653 240 NWI-GAFLVTLCFGFLVR------------HFGSAATFWIFTVCCVVGTVFTFMVV-PETK 286 (301)
Q Consensus 240 ~~~-~~~i~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~et~ 286 (301)
+++ +..++|.+.+.+.+ ..+|+..|.++.++++++.++..... .|++
T Consensus 394 g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 454 (467)
T PRK09556 394 AYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVMEER 454 (467)
T ss_pred HHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 66999999999999 56788888888888887776665543 4443
No 21
>PRK03545 putative arabinose transporter; Provisional
Probab=99.83 E-value=2.5e-20 Score=164.32 Aligned_cols=245 Identities=11% Similarity=0.028 Sum_probs=176.4
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
.|+++.++..+++++.++++++++++.+++.|+++|++.+...+....++.|++|+++|++..++++.+..+|..+++.+
T Consensus 73 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l 152 (390)
T PRK03545 73 RRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPL 152 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhH
Confidence 46777888889999999999999999999999999999998999999999999999999999999999999999998887
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. |||+.|++.++++++..+..++.+||+|+. + + + +.
T Consensus 153 ~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~--------------~-~-----------------~~ 195 (390)
T PRK03545 153 GRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H--------------S-G-----------------SL 195 (390)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C--------------c-c-----------------hH
Confidence 754 999999999998887766655466775420 0 0 0 00
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~ 219 (301)
.+.++.+++|..+........... ..+....+.+.++++ .|.+.+..... +.||.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~ 270 (390)
T PRK03545 196 KSLPLLFRRPALVSLYLLTVVVVT-----AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPS 270 (390)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 123445666633332222221111 123334555555555 35553322111 3333222
Q ss_pred ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF 251 (301)
Q Consensus 220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~ 251 (301)
..|..| +.|+++.|+.+...+++..++|.+.
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~ 349 (390)
T PRK03545 271 GFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLG 349 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666 5789999999999999999999999
Q ss_pred HHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHH
Q psy16653 252 GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLA 291 (301)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~ 291 (301)
+.+.++.|++..+...+.+.+++.++.+...+ ....++|
T Consensus 350 G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 388 (390)
T PRK03545 350 NQVSLHLGLSSIGYVGAALALAALVWSILIFR-RFPVTLE 388 (390)
T ss_pred HHHHhccChhHHHHHHHHHHHHHHHHHHHHcc-ccchhhc
Confidence 99999999999998888888888777666443 3333444
No 22
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.82 E-value=3.5e-20 Score=158.52 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=178.4
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+++...+.+|.++++++++++||+.++++|++.|++.|...++...+..+..||++|++++++...+.+++.+++..++
T Consensus 78 r~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLG 157 (394)
T COG2814 78 RRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLG 157 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHH
Confidence 56777888999999999999999999999999999999999999999999999999999999999999888888887776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA 158 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
.+ |||..|++.+..+++.++..+..+| |+.. + +. . +.+..
T Consensus 158 t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~----~------------~~---~--------------~~~~~ 202 (394)
T COG2814 158 TFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI----S------------GS---L--------------PGPLR 202 (394)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC----C------------CC---C--------------Ccchh
Confidence 55 9999999999999998888887888 2110 0 00 0 00111
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc-
Q psy16653 159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS- 219 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~- 219 (301)
+..+.+++|..+..+.. ..++ ++|.+....|...++++ .|++.+..... +.|+ +.
T Consensus 203 ~~~~~l~~p~v~~~l~~-t~l~----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~ 276 (394)
T COG2814 203 TLLRLLRRPGVLLGLLA-TFLF----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR 276 (394)
T ss_pred HHHHHhcCchHHHHHHH-HHHH----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence 24556777744443333 2232 33455555565555555 46664332221 3333 11
Q ss_pred ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF 251 (301)
Q Consensus 220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~ 251 (301)
.++ .-++.+..+.+++....+++..++..+.
T Consensus 277 ~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lG 355 (394)
T COG2814 277 RALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALG 355 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 4456789999999999999999999999
Q ss_pred HHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653 252 GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+.+.+++|+....+..+...+++.++.....+
T Consensus 356 G~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 356 GLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888888888877777665433
No 23
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.82 E-value=4.4e-20 Score=165.81 Aligned_cols=261 Identities=12% Similarity=0.061 Sum_probs=169.9
Q ss_pred cccccccccCccccchhhhhccC----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH-H
Q psy16653 3 PVTLNQLALPDGGVGYEINFKET----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI-L 77 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~ 77 (301)
+|+++.++..+++++.++.++.+ +++.+++.|++.|++.|...+.....+.|++|+++|++..++++.+..+|. +
T Consensus 92 ~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~ 171 (452)
T PRK11273 92 PRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGL 171 (452)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhH
Confidence 46677778888888888777653 566788899999999999989888899999999999999999999988886 3
Q ss_pred HHHHhcc----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653 78 YLYCLGL----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA 152 (301)
Q Consensus 78 ~~~~i~~----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
.+++++. . +||+.|++.+++.++..++..+++||+|+....+.+ ++.+ ++.+ +.. +++.++
T Consensus 172 ~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~------~~~~-~~~------~~~~~~ 237 (452)
T PRK11273 172 PPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK------NDYP-DDY------NEKHEQ 237 (452)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh------hccc-ccc------ccccCC
Confidence 4444321 2 999999999988888766665588998864211111 1100 0000 000 000000
Q ss_pred Hhhccchh-hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653 153 AARKKASF-SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I 213 (301)
Q Consensus 153 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l 213 (301)
+++.+..+ ..+++++..+...+...... ...+.+..|.|.++++. |++....... +
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l 312 (452)
T PRK11273 238 ELTAKQIFMQYVLPNKLLWYIAIANVFVY-----LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWM 312 (452)
T ss_pred CccHHHHHHHHHHcChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011 12445543222222211111 12456777889988764 5553222111 4
Q ss_pred hhhcc--c---------------------------------------------------ccccCCcchhhhHHHHHHHHH
Q psy16653 214 QDSLI--S---------------------------------------------------MFDCIPFQVKGIATGIAVAVN 240 (301)
Q Consensus 214 ~~~v~--~---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~ 240 (301)
.|++. + ..|.+|++.||++.|+.+...
T Consensus 313 ~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 392 (452)
T PRK11273 313 SDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 392 (452)
T ss_pred HHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHH
Confidence 44431 1 458999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 241 WIGAFL-VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 241 ~~~~~i-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
++++.+ +|.+.+.+.++.|++..|.+.+++++++.+....+.
T Consensus 393 ~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 393 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 998765 799999999999998899888888887776665443
No 24
>KOG2532|consensus
Probab=99.82 E-value=1.7e-20 Score=166.49 Aligned_cols=255 Identities=15% Similarity=0.099 Sum_probs=192.5
Q ss_pred cccccccccCccccchhhhhcc--CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKE--TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
+|+++..+..+.++++++.-.+ .+++.+++.|+++|++.|..+|....+.+.|+|++||++..++...+..+|.+++.
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~m 181 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITM 181 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888887554 45667899999999999999999999999999999999999999999999999988
Q ss_pred Hhccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653 81 CLGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA 154 (301)
Q Consensus 81 ~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
.+++. ||+.+|++.++.+++..++++++..|+|.. ++.-.++|.+++++++.+++
T Consensus 182 p~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~-------------------h~~is~~El~~I~~~k~~~~ 242 (466)
T KOG2532|consen 182 PVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK-------------------HPNISEKELKYIEKGKSEAH 242 (466)
T ss_pred HhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-------------------CCCCCHHHHHHHHhcccccc
Confidence 77654 999999999999999999998778888842 12234455555555544332
Q ss_pred h---ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653 155 R---KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I 213 (301)
Q Consensus 155 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l 213 (301)
. .+.+++++++++..+ . ..+..+....+++.+..|+|.++++. +++...+-.. +
T Consensus 243 ~~~~~~vP~~~i~ts~~vw-a----i~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~l 317 (466)
T KOG2532|consen 243 VKKKPPVPYKAILTSPPVW-A----IWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQL 317 (466)
T ss_pred cCCCCCCCHHHHHcCHHHH-H----HHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 367899999998433 2 22223334445889999999999986 6554433222 3
Q ss_pred hhhccc-----------------------------------------------------------ccccCCcchhhhHHH
Q psy16653 214 QDSLIS-----------------------------------------------------------MFDCIPFQVKGIATG 234 (301)
Q Consensus 214 ~~~v~~-----------------------------------------------------------~~e~~p~~~R~~~~~ 234 (301)
+|++-. ..+. .++.-+...|
T Consensus 318 sD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g 396 (466)
T KOG2532|consen 318 SDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMG 396 (466)
T ss_pred HHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHH
Confidence 333110 2222 4455699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 235 IAVAVNWIGAFLVTLCFGFLVR---HFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
+.+.+..+.++++|.+.+.+.. ..+|+.+|++.+++.+++.++..++.
T Consensus 397 ~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 397 IINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 9999999999999999998883 34688999999999999887766654
No 25
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.82 E-value=5.9e-20 Score=162.77 Aligned_cols=246 Identities=16% Similarity=0.121 Sum_probs=169.4
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+..+..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.+
T Consensus 79 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 158 (406)
T PRK11551 79 RKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI 158 (406)
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888899999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. +||+.|++.++..++..++..+++||+|++...+++.++. ++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------~~--------------- 208 (406)
T PRK11551 159 GVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR---------------AP--------------- 208 (406)
T ss_pred HHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh---------------hh---------------
Confidence 643 8999999988877766665554789998653221110000 00
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS- 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~- 219 (301)
..+..++.+..+ +..... ...+......+....|.|.++++.|.+....... +.|+.++
T Consensus 209 -~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 285 (406)
T PRK11551 209 -VLRALFGEGRAT-ATLLLW-ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR 285 (406)
T ss_pred -hHHHHhhhhhhh-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 001111111011 111111 1111222234566778888888877653322211 3444332
Q ss_pred -----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 -----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFG 252 (301)
Q Consensus 220 -----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~ 252 (301)
..|.+|++.|+++.|+.+..+.+++.++|.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g 365 (406)
T PRK11551 286 RVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAG 365 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHh
Confidence 789999999999999999999999999999999
Q ss_pred HHHHhhCcc-hhHHHHHHHHHHHHHHhhee
Q psy16653 253 FLVRHFGSA-ATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 253 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 281 (301)
.+.++.+.. ..+.....+.+++.++.+..
T Consensus 366 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 366 QLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred hhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998875543 33444444454544444443
No 26
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.82 E-value=1.6e-20 Score=164.97 Aligned_cols=261 Identities=13% Similarity=0.069 Sum_probs=179.8
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+++++.++.+++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+....+|.++++.+
T Consensus 58 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 137 (399)
T TIGR00893 58 ARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPL 137 (399)
T ss_pred cceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45667778888889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. +||+.|++.+++.++..+..++..||+|+.-.. .+.++.....++...+ .++.++++.+.
T Consensus 138 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 205 (399)
T TIGR00893 138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKW-LTEEEKYIVVGGLLAE-----------QQGKGPSTPKK 205 (399)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcccc-CCHHHHhhcchhhccc-----------cccccccCCCc
Confidence 764 999999999998888777766567877632100 0111100000000000 00000111123
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhccc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLIS 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~~ 219 (301)
.+.++.+++|..+.. ...... .......+..+.|.++++. |.+....... +.|++++
T Consensus 206 ~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 280 (399)
T TIGR00893 206 YQIKELLKDRRVWGL----ALGQFL-VNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLR 280 (399)
T ss_pred cchHHHhcCHHHHHH----HHHHHH-HHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666532222 212222 2223556677777777653 4432211110 2232111
Q ss_pred -------------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHH
Q psy16653 220 -------------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGA 244 (301)
Q Consensus 220 -------------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~ 244 (301)
..|.+|++.|+++.|+.+.+.++++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 360 (399)
T TIGR00893 281 RGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGG 360 (399)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhe
Q psy16653 245 FLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 245 ~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 280 (301)
.++|.+.+.+.+..| ++..+.+.+++++++.+..++
T Consensus 361 ~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 361 IVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 877888887777776665543
No 27
>PRK15075 citrate-proton symporter; Provisional
Probab=99.81 E-value=1.4e-19 Score=161.68 Aligned_cols=221 Identities=10% Similarity=0.068 Sum_probs=143.1
Q ss_pred ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
|+++..++.+++++++++++++++.. ++++|+++|++.|...+....+++|++|+++||+.+++.+....+|
T Consensus 86 r~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g 165 (434)
T PRK15075 86 RKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVA 165 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHH
Confidence 56777888889999999999999874 6889999999999999999999999999999999999987766655
Q ss_pred HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653 76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE 142 (301)
Q Consensus 76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (301)
..+++.++ ..|||+.|++..+...+...... ..||++.+...+++ .
T Consensus 166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~-------------~------- 224 (434)
T PRK15075 166 VVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRR-SLEETEEFLARKHR-------------P------- 224 (434)
T ss_pred HHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHhhhc-------------c-------
Confidence 55444332 12999999986655433333332 45554422110000 0
Q ss_pred HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653 143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY--------- 212 (301)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~--------- 212 (301)
+.+..+++..++ ++.....+..... +..+.+.+.+|.|.++++ .|++.+.....
T Consensus 225 ------------~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~ 288 (434)
T PRK15075 225 ------------SMREIFRSLAAN---WRIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF 288 (434)
T ss_pred ------------ccccHHHHHHHh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 000011111111 1122222222222 233456677788888776 36553322111
Q ss_pred --------Hhhhccc----------------------------------------------------ccccCCcchhhhH
Q psy16653 213 --------IQDSLIS----------------------------------------------------MFDCIPFQVKGIA 232 (301)
Q Consensus 213 --------l~~~v~~----------------------------------------------------~~e~~p~~~R~~~ 232 (301)
+.||+++ .+|.+|++.|+++
T Consensus 289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~ 368 (434)
T PRK15075 289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAG 368 (434)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchh
Confidence 2333221 7899999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhhCcc
Q psy16653 233 TGIAVAVNWI-GAFLVTLCFGFLVRHFGSA 261 (301)
Q Consensus 233 ~~~~~~~~~~-~~~i~~~~~~~l~~~~~~~ 261 (301)
.++.+.++.. ++.++|.+.+.+.++.|+.
T Consensus 369 ~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 369 FSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred eeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 9998777665 5888999999999988853
No 28
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.80 E-value=4.7e-19 Score=156.57 Aligned_cols=248 Identities=9% Similarity=0.017 Sum_probs=161.6
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.+
T Consensus 76 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 155 (405)
T TIGR00891 76 RRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV 155 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccc-----h--hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653 83 GLS-----T--YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR 155 (301)
Q Consensus 83 ~~~-----~--Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
+.. + ||+.|++.+++.++..+... .+||+|++...+++.++..+..++..+.+....+..++
T Consensus 156 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 224 (405)
T TIGR00891 156 YSLVVPVWGDGWRALFFISILPIIFALWLRK-NIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMT---------- 224 (405)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHHHH-hCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhh----------
Confidence 643 4 99999998877777666655 78999876433322222222222221111000000000
Q ss_pred ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhc
Q psy16653 156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSL 217 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v 217 (301)
.....++. .+..+...........+..+. ......+.|.++.+ .|.+....... +.|++
T Consensus 225 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 301 (405)
T TIGR00891 225 LAAAMVQS--AGKRWPTFVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL 301 (405)
T ss_pred hhHHhhhh--hhhhhHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00001110 010111111111121221111 23444556666654 35442221110 33332
Q ss_pred cc-------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653 218 IS-------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT 248 (301)
Q Consensus 218 ~~-------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~ 248 (301)
++ ..|.+|++.|+++.|+.+.+.++++.++|
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~ 381 (405)
T TIGR00891 302 GRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAP 381 (405)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHH
Confidence 22 88999999999999999999999999999
Q ss_pred HHHHHHHHhhC-cchhH
Q psy16653 249 LCFGFLVRHFG-SAATF 264 (301)
Q Consensus 249 ~~~~~l~~~~~-~~~~~ 264 (301)
.+.+.+.++.| ++..+
T Consensus 382 ~~~g~l~~~~g~~~~~~ 398 (405)
T TIGR00891 382 IIGALLAQRLDEYGTAL 398 (405)
T ss_pred HHHHHHHHhccccchhH
Confidence 99999999988 54433
No 29
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.79 E-value=1.1e-19 Score=162.67 Aligned_cols=267 Identities=13% Similarity=0.073 Sum_probs=175.3
Q ss_pred cccccccccCccccchhhhhcc----CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKE----TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY 78 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~ 78 (301)
+|+++.++..+.+++.++.+.. .++..+.+.|++.|++.|...+....++.|++|+++||+..++++.+..+|..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~ 169 (438)
T TIGR00712 90 PRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI 169 (438)
T ss_pred CceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH
Confidence 3556667777777777776654 345567788999999999999999999999999999999999999998888887
Q ss_pred HHHhcc-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653 79 LYCLGL-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA 152 (301)
Q Consensus 79 ~~~i~~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
++.+.. . +||..|++.++++++..+..++++||+|+....+ +.++ .+++..+...+ +.++ +
T Consensus 170 ~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~--~~~~---~ 236 (438)
T TIGR00712 170 PPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEE-------YRNDYPDDYNE--KAEQ---E 236 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchh-------ccccccccccc--cccc---c
Confidence 764432 2 8999999999998887666665789988542100 0000 00000000000 0000 0
Q ss_pred HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hh
Q psy16653 153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQ 214 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~ 214 (301)
.+.++...+..++++..+.......+ .....+.+..|.|.++++. |.+....... +.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~ 311 (438)
T TIGR00712 237 LTAKEIFMQYVLPNKLLWYIAIANVF-----VYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 311 (438)
T ss_pred cchHHHHHHHHccCchHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011234555533322222111 1122456777888888764 5543222111 33
Q ss_pred hhccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHH
Q psy16653 215 DSLIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNW 241 (301)
Q Consensus 215 ~~v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~ 241 (301)
||.++ ..|.+|++.|+++.|+.+..++
T Consensus 312 dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 391 (438)
T TIGR00712 312 DKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGY 391 (438)
T ss_pred HHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHH
Confidence 44311 4689999999999999999998
Q ss_pred HHH-HHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 242 IGA-FLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 242 ~~~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
+++ .++|.+.+.+.++.|+...+.+..+.++++.+...+..||.|+
T Consensus 392 ~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 392 LGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 875 6899999999999999888888888888888888888888663
No 30
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.79 E-value=1e-18 Score=154.14 Aligned_cols=245 Identities=11% Similarity=0.007 Sum_probs=169.7
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+..++.+++++.++++++++++.++++|+++|++.|...+....++.|++| ++|+++++.+..+...|..++..+
T Consensus 73 ~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~ 151 (393)
T PRK09705 73 ERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAI 151 (393)
T ss_pred chHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999999999999999987 889999999998877777777766
Q ss_pred ccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc
Q psy16653 83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARK 156 (301)
Q Consensus 83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
+.. +||..+...+++.++..+..++..++.|+ + ++ + +
T Consensus 152 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----------~~-----------------~-~ 194 (393)
T PRK09705 152 TPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA---------S----------SH-----------------K-T 194 (393)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------c----------cc-----------------C-C
Confidence 543 79999887777665444433311111110 0 00 0 0
Q ss_pred cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc
Q psy16653 157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS 219 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~ 219 (301)
+.+..+.++++..+. .. ..... ...+++....|.|.++.+.|.+.+..... +.|+.++
T Consensus 195 ~~~~~~~l~~~~~~~-l~---~~~~~-~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~ 269 (393)
T PRK09705 195 TTTPVRVVFTPRAWT-LG---VYFGL-INGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDR 269 (393)
T ss_pred CcCCcccccCHhHHH-HH---HHHHH-HHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 001122333432221 11 11111 12235677788899888876664332211 2333222
Q ss_pred -----------------------------------------------ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 -----------------------------------------------MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCF 251 (301)
Q Consensus 220 -----------------------------------------------~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~ 251 (301)
..+.+ |++.|++..|+.+..+++++.++|.+.
T Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~ 349 (393)
T PRK09705 270 RKLLMLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS 349 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 567899999999999999999999999
Q ss_pred HHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 252 GFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 252 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
+++.++.| +...+.+.++++++..++.+...|||+++..
T Consensus 350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 350 GVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 99999887 5556666677777777777778888876643
No 31
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.78 E-value=3.1e-19 Score=160.95 Aligned_cols=254 Identities=13% Similarity=0.059 Sum_probs=173.3
Q ss_pred cccccccccCccccchhhhhc--cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFK--ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
+|+.+.+++.+++++.++... ..+++.+++.|+++|++.|...+....++.|++|+++|++..++.+.+..+|.++++
T Consensus 105 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 184 (465)
T TIGR00894 105 FKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFL 184 (465)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777788777643 356778999999999999999999999999999999999999999999999999888
Q ss_pred Hhccc------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH--
Q psy16653 81 CLGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA-- 152 (301)
Q Consensus 81 ~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 152 (301)
.+... +||+.|++.++++++..++++++.+|+|+.... ..++.++ ..++..++
T Consensus 185 ~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~-----------------~i~~~~~~~~ 245 (465)
T TIGR00894 185 PISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFEKK-----------------YINSSLQGQK 245 (465)
T ss_pred HHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHHHH-----------------HHHhhccccc
Confidence 77543 899999999999988887777567788852110 0011000 11110000
Q ss_pred -HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653 153 -AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I 213 (301)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l 213 (301)
+.+.+.+++++++++..+... +..+....+.+.+..|+|.++++. |.+....... +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l 320 (465)
T TIGR00894 246 GSTRQSLPIKAIPKSLPVWAIW-----FAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYL 320 (465)
T ss_pred CCCCCCCCHHHHhcCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 011223567777776332222 222233334677888999998764 5543222111 2
Q ss_pred hhhccc-----------------------------------------------------------ccccCCcchhhhHHH
Q psy16653 214 QDSLIS-----------------------------------------------------------MFDCIPFQVKGIATG 234 (301)
Q Consensus 214 ~~~v~~-----------------------------------------------------------~~e~~p~~~R~~~~~ 234 (301)
.|+..+ ..|..|. .+|++.|
T Consensus 321 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g 399 (465)
T TIGR00894 321 ADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKG 399 (465)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHH
Confidence 332110 3455555 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---CcchhHHHHHHHHHHHHHHhhee
Q psy16653 235 IAVAVNWIGAFLVTLCFGFLVRHF---GSAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
+.+..+.+++.++|.+.+++.+.. +|...|.+.++.++++.++..+.
T Consensus 400 ~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 400 ITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 999999999999999999887643 36667888888888777665543
No 32
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.78 E-value=1e-18 Score=155.46 Aligned_cols=259 Identities=15% Similarity=0.018 Sum_probs=179.7
Q ss_pred cccccccccCccccchhhhh-----ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINF-----KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 77 (301)
+|+++.++..+.+++.+..+ ..++++.+++.|++.|++.|...+....++.|+.|+++|++..++.+....+|..
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (417)
T PRK10489 81 RKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV 160 (417)
T ss_pred CceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH
Confidence 35566666666665554432 2567788889999999998888888899999999999999999999999999999
Q ss_pred HHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653 78 YLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA 152 (301)
Q Consensus 78 ~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
+++.++.. +||+.|++.++..++..+..+ .+||+++.- +++ + +..++
T Consensus 161 ~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~--~~~--------------~-~~~~~---------- 212 (417)
T PRK10489 161 ISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPALPPPP--QPR--------------E-HPLRS---------- 212 (417)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCCCCCC--ccc--------------c-cchHH----------
Confidence 98888754 899999998888877766665 788765310 000 0 00000
Q ss_pred HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hh
Q psy16653 153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQ 214 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~ 214 (301)
....++..+++|..+...+. ..+... .+.+..+.|.++++ .|.+....... +.
T Consensus 213 ---~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~ 283 (417)
T PRK10489 213 ---LLAGFRFLLASPVVGGIALL-GGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLA 283 (417)
T ss_pred ---HHHHHHHHHcChHHHHHHHH-HHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 01123445555533222222 111111 23445567777776 45543221111 11
Q ss_pred hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653 215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL 246 (301)
Q Consensus 215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i 246 (301)
|+... ..|..|++.|+++.|+.+...+++..+
T Consensus 284 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 284 HSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAI 363 (417)
T ss_pred hccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhH
Confidence 21100 678999999999999999999999999
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhc
Q psy16653 247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELG 298 (301)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~ 298 (301)
++.+.+.+.+..|.+..+...+++.++..++.+...|++|++++||++++-+
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 9999999999999888888888887777777777789999999999877543
No 33
>TIGR00895 2A0115 benzoate transport.
Probab=99.76 E-value=6.3e-19 Score=155.23 Aligned_cols=246 Identities=15% Similarity=0.115 Sum_probs=163.8
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+..+..+.+++.++..++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+.+..+|..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 82 KRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 45666777778888888889999999999999999999999999999999999999999999999999999999888776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA 158 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
.. +||+.|++.++..++..++.++++||+|++...+ +.+++.+..++......+..++ +..++.++++..+.
T Consensus 162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 238 (398)
T TIGR00895 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQKATQGTKRS 238 (398)
T ss_pred HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccccccccchhhH
Confidence 43 9999999987666666655555899999876555 4444444443332211110000 00000000001111
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc--
Q psy16653 159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS-- 219 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~-- 219 (301)
..+..++.+ ..++......... ....+.+....|.|.+.++.|.+.+..... +.|+.++
T Consensus 239 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (398)
T TIGR00895 239 VFKALFQGK-TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV 316 (398)
T ss_pred HHHHHhcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 122233333 2333333222222 223345667778887777776653322111 3333322
Q ss_pred ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253 (301)
Q Consensus 220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~ 253 (301)
..|.+|++.|+++.|+.+.+..++..++|.+.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 317 TALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 7899999999999999999999999999988776
Q ss_pred H
Q psy16653 254 L 254 (301)
Q Consensus 254 l 254 (301)
+
T Consensus 397 l 397 (398)
T TIGR00895 397 L 397 (398)
T ss_pred c
Confidence 4
No 34
>KOG2533|consensus
Probab=99.76 E-value=2.3e-19 Score=159.72 Aligned_cols=174 Identities=10% Similarity=0.026 Sum_probs=122.8
Q ss_pred cccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---
Q psy16653 9 LALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--- 85 (301)
Q Consensus 9 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--- 85 (301)
....++++-+++++...+++.+++.|++.|+.+|..+|....+++-|+.++|||+.++++.+...+|.+++.++++.
T Consensus 116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 33444555666677788999999999999999999999999999999999999999999997777777776666421
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHhcccccchh--HHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhh
Q psy16653 86 --------TYTVIAIGCLAVPILLLVLFFLVVPETPI--YLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAAR 155 (301)
Q Consensus 86 --------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (301)
||||.|++.|+++++..++.++++|+.|. |...+ +|.+-..++.+..+.+.. +++.
T Consensus 196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~---~ek~~~~~~~~~~~~~~~-----------~~~~ 261 (495)
T KOG2533|consen 196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD---EEKELVVERLRESPSGGI-----------ENKF 261 (495)
T ss_pred hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch---HHHHHHHHHHHhccCCCc-----------cccc
Confidence 99999999999999999999989999996 22221 111111112211111100 0012
Q ss_pred ccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh
Q psy16653 156 KKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS 201 (301)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 201 (301)
+...+++.+++|..+...+ ..++.... .+++.+|+|.++++
T Consensus 262 ~~~~~~~a~~dp~vw~~~l----~~~~~~lv-~~~~~~~lpl~l~~ 302 (495)
T KOG2533|consen 262 KWKGFKEALKDPGVWPFSL----CYFFLKLV-NYGFSYWLPLYLKS 302 (495)
T ss_pred CHHHHHHHHhchhHHHHHH----HHHHHhhc-cccHHHHHHHHHHc
Confidence 4456788888884333222 22333332 67899999999998
No 35
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.75 E-value=6.8e-19 Score=153.92 Aligned_cols=243 Identities=13% Similarity=0.080 Sum_probs=163.8
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH-H
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY-C 81 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~-~ 81 (301)
+|+++.++..+.+++.++.+++++++.+++.|++.|++.|...+....++.|+.|+++|++..++.+.+..+|..+++ .
T Consensus 59 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 138 (379)
T TIGR00881 59 PRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL 138 (379)
T ss_pred CeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH
Confidence 466778888888999999999999999999999999999999999999999999999999999999999999998888 3
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhc
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARK 156 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (301)
++.. +||+.|++.+++.++..++.+++.||+|+....+.+.++ ..++.+.++ ++..++.+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~ 205 (379)
T TIGR00881 139 VLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM--------PNEEPDGDA-----EKKEEELTKK 205 (379)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC--------ccccccccc-----ccccccccch
Confidence 4322 999999999988887776666578887753111000000 000000000 0000000111
Q ss_pred cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhcc
Q psy16653 157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLI 218 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~ 218 (301)
+...++.+++|..+...+..... ......+..+.|.++.+. |.+....... +.|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 206 QIFLQYVLLNKVLWYISLGYVFV-----YVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 12344556665333222211111 112445666777777553 5442221111 333210
Q ss_pred c-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHH
Q psy16653 219 S-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAF 245 (301)
Q Consensus 219 ~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~ 245 (301)
. ..|.+|++.|+++.|+.+.+..+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 360 (379)
T TIGR00881 281 NGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI 360 (379)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence 0 68999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCcchh
Q psy16653 246 LVTLCFGFLVRHFGSAAT 263 (301)
Q Consensus 246 i~~~~~~~l~~~~~~~~~ 263 (301)
++|.+.+.+.++.|++..
T Consensus 361 ~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 361 LAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hhhhhHHHHHHhhccccc
Confidence 999999999999888754
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.74 E-value=2.9e-18 Score=149.79 Aligned_cols=237 Identities=14% Similarity=0.003 Sum_probs=162.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++.+++++++.+++.|++.|++.|..++....++.|++| ++|++..++.+.+..+|.+++..+
T Consensus 67 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 145 (377)
T TIGR00890 67 PRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL 145 (377)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHH
Confidence 3667778888899999999999999999999999999999988888889999987 579999999999988887664433
Q ss_pred c-cc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 G-LS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~-~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
. .. +||+.|++.+++.++..+..+++++|+|+.-. + ++.+..+ ++
T Consensus 146 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~--------------~~ 195 (377)
T TIGR00890 146 ITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLI-K---------------TNIEVSV--------------KD 195 (377)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcc-c---------------cCcccch--------------hh
Confidence 2 22 89999999999998887776646666542100 0 0000000 00
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS- 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~- 219 (301)
.+.++.++++..+. ......... +. ......+.+.+.++.+.+.+..... +.||+++
T Consensus 196 ~~~~~~~~~~~~~~-~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 196 YTVWEMLRTPQFWV-LYLSFFLNA---VS-GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred hhHHHHHcCccHHH-HHHHHHHHh---HH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12334555553222 221111111 11 2223334444555555442211110 3333222
Q ss_pred -------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q psy16653 220 -------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLC 250 (301)
Q Consensus 220 -------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~ 250 (301)
.+|.+|++.|+++.|+.+....+++.++|.+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~ 350 (377)
T TIGR00890 271 KTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI 350 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999999
Q ss_pred HHHHHHhhCcchhHHHHHHHHHHHH
Q psy16653 251 FGFLVRHFGSAATFWIFTVCCVVGT 275 (301)
Q Consensus 251 ~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (301)
.+.+.++.|++..|.+.+++++++.
T Consensus 351 ~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 351 ASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999888888777776654
No 37
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.74 E-value=9.1e-18 Score=147.55 Aligned_cols=232 Identities=14% Similarity=0.106 Sum_probs=159.0
Q ss_pred ccccccccCccccchhhhhccCCeeE--------EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVS--------IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
|+.+.++..+.+++.++.++++++.. +++.|+++|++.|...+....++.|+.|+++|++..++.+.+..+|
T Consensus 65 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G 144 (394)
T TIGR00883 65 KKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVG 144 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHH
Confidence 56677888888999999999998763 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHH
Q psy16653 76 ILYLYCLG-------------LSTYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLE 142 (301)
Q Consensus 76 ~~~~~~i~-------------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 142 (301)
.++++.++ ..+||+.|++.+++.++..++.. .+||+|++...+++
T Consensus 145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------------- 202 (394)
T TIGR00883 145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRR-NLEETPVFEKAQEK--------------------- 202 (394)
T ss_pred HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHhc---------------------
Confidence 98887653 12899999998887776666555 77887743211000
Q ss_pred HHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh---------
Q psy16653 143 LAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY--------- 212 (301)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~--------- 212 (301)
+++...++++.++++. ++.......... .....+....+.|.++++ .|.+.+.....
T Consensus 203 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 269 (394)
T TIGR00883 203 ----------HKKKRGPIRETLTKHR--KPFLLGLGLVIA-TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFF 269 (394)
T ss_pred ----------cccccCCHHHHHHhch--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 0011223444554431 122222222222 222345666778887744 45443222111
Q ss_pred --------Hhhhccc----------------------------------------------------ccccCCcchhhhH
Q psy16653 213 --------IQDSLIS----------------------------------------------------MFDCIPFQVKGIA 232 (301)
Q Consensus 213 --------l~~~v~~----------------------------------------------------~~e~~p~~~R~~~ 232 (301)
+.||+++ .+|.+|++.|+++
T Consensus 270 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 349 (394)
T TIGR00883 270 ITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG 349 (394)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence 3333222 7899999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHH
Q psy16653 233 TGIAV-AVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVC 270 (301)
Q Consensus 233 ~~~~~-~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~ 270 (301)
.++.+ ....++..++|.+.+.+.++.| ++..++...+.
T Consensus 350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 99855 4456788899999999999888 65444444433
No 38
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.72 E-value=1.3e-17 Score=151.66 Aligned_cols=112 Identities=9% Similarity=-0.092 Sum_probs=95.5
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+++.++..+++++.++..++++++.+++.|++.|++.++.++....++.|++|+++|++..++...+..+|..+++.+.
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888899999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHH
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYL 116 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l 116 (301)
.. +||+.|++..++.++.++... .+||++++.
T Consensus 165 ~~l~~~~~w~~~f~~~~~~~~~~~~~~~-~~p~~~~~~ 201 (496)
T PRK03893 165 SLVVPVWGWRALFFIGILPIIFALWLRK-NLPEAEDWK 201 (496)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHH-hCCCchhhh
Confidence 54 899999986665555544444 789887664
No 39
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.71 E-value=4.4e-17 Score=144.05 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=151.5
Q ss_pred cccccccccCccccchhhhhcc---C-----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKE---T-----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL 74 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~---~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~ 74 (301)
+|+++..+..++++++...+.+ . ++..+++.|+++|++.+...+....++.|+.|+++|++..++.+.+...
T Consensus 80 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 159 (399)
T PRK05122 80 PKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYG 159 (399)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhH
Confidence 4677777777777766655443 2 4556899999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653 75 GILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE 149 (301)
Q Consensus 75 G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
|.++++.++.. +||..+++..+..++..+... ..||++.. +++.++
T Consensus 160 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~------------------------- 210 (399)
T PRK05122 160 ALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLAR-PRPAVPPV---KGERLP------------------------- 210 (399)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh-cCCCCCCC---Cccchh-------------------------
Confidence 88887777654 999999887777665554443 44543310 000000
Q ss_pred HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---------------Hh
Q psy16653 150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY---------------IQ 214 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~---------------l~ 214 (301)
+++.++. .+..... ..+. .+ ++.....+.+.++.+.|.+....... +.
T Consensus 211 ----------~~~~~~~--~~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 273 (399)
T PRK05122 211 ----------FRRVLGR--VWPYGMG-LALA---SI-GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLI 273 (399)
T ss_pred ----------HHHHHHH--HHHHHHH-HHHH---HH-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0000000 0000 00 01122233333333332211000000 11
Q ss_pred hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653 215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL 246 (301)
Q Consensus 215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i 246 (301)
|+.++ ..|..|++.|+++.|+.+....++..+
T Consensus 274 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 353 (399)
T PRK05122 274 NRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI 353 (399)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 568889999999999999999999999
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCC
Q psy16653 247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT 289 (301)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 289 (301)
++.+.+.+.++.|++..+.+.+++++++.++..+ .+++++++
T Consensus 354 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 395 (399)
T PRK05122 354 TGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hccccccc
Confidence 9999999999999988888888888877766655 44444443
No 40
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.70 E-value=7.3e-17 Score=142.39 Aligned_cols=232 Identities=12% Similarity=0.008 Sum_probs=160.3
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+++..+..+++++.++..++++++.+++.|+++|++.|...+....++.|++|+++|++..++.....++|.++++.+
T Consensus 84 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 163 (394)
T PRK10213 84 RRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPL 163 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. +||+.|++.+++++++.+.....+||+|+. + ++ ..
T Consensus 164 ~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~~-------------------------------~~ 206 (394)
T PRK10213 164 GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-SH-------------------------------QK 206 (394)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-cc-------------------------------ch
Confidence 764 999999999887776655544356776521 0 00 00
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHh-HHHHHHhcCCCCCcchhh-----------------Hhhhccc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFY-SNDIFKSAGSTLDPGFSY-----------------IQDSLIS 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~~~~~-----------------l~~~v~~ 219 (301)
.+.++.+++|..+..... ..+... +......+ .|.+.++.|.+.+..... +.||..+
T Consensus 207 ~~~~~~l~~~~~~~~~~~-~~~~~~----~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~ 281 (394)
T PRK10213 207 QNTFRLLQRPGVMAGMIA-IFMSFA----GQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK 281 (394)
T ss_pred hHHHHHhcCHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 112345555533332221 111111 12233334 466666666664331111 2222111
Q ss_pred ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF 251 (301)
Q Consensus 220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~ 251 (301)
+.+..|+ .++...+.......++..+++.+.
T Consensus 282 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~ 360 (394)
T PRK10213 282 LALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIG 360 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566664 356777777888899999999999
Q ss_pred HHHHHhhCcchhHHHHHHHHHHHHHH
Q psy16653 252 GFLVRHFGSAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (301)
+.+.+..|++..+...+++..+..+.
T Consensus 361 G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 361 GYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHhccChhhHHHHHHHHHHHHHHH
Confidence 99999988877776666555554433
No 41
>KOG1330|consensus
Probab=99.69 E-value=1.4e-19 Score=154.76 Aligned_cols=112 Identities=11% Similarity=0.009 Sum_probs=106.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
++.++.+|..+|.++.+.++++.+||+++++|.+.|+|++...|+++.+++|.+|..+|++..+++++...+|..+|+++
T Consensus 97 R~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv 176 (493)
T KOG1330|consen 97 RKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV 176 (493)
T ss_pred cceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc------hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653 83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
+.. .|||.|+..++++++++++.+++++|+.|
T Consensus 177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence 876 59999999999999999998878899864
No 42
>PRK12382 putative transporter; Provisional
Probab=99.68 E-value=1.9e-16 Score=139.66 Aligned_cols=234 Identities=15% Similarity=0.080 Sum_probs=146.0
Q ss_pred cccccccccCccccchhh---hhc-----cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEI---NFK-----ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL 74 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~---~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~ 74 (301)
+|+++..+..++.++.+. .+. .++++.+++.|+++|++.+...+....++.|+.|+++|++++++.+.+...
T Consensus 80 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~ 159 (392)
T PRK12382 80 AKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYG 159 (392)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHH
Confidence 355555555555544332 221 346778999999999999988888899999999999999999999998888
Q ss_pred HHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653 75 GILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE 149 (301)
Q Consensus 75 G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
|..+++.++.. +||..+.+..+..++...... ..||.+.. +++.++
T Consensus 160 g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~------------------------- 210 (392)
T PRK12382 160 ALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNG-TVRKVPAH---AGERPS------------------------- 210 (392)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH-hccCCCCC---cccCch-------------------------
Confidence 88888877653 999988776666555444333 44554310 000000
Q ss_pred HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---------------Hh
Q psy16653 150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY---------------IQ 214 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~---------------l~ 214 (301)
.++.++. .+......... ..+...+..+.|.++++.+.+....... +.
T Consensus 211 ----------~~~~~~~--~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 273 (392)
T PRK12382 211 ----------LWSVVGL--IWKPGLGLALQ-----GVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMP 273 (392)
T ss_pred ----------HHHHHHH--HHHhHHHHHHH-----HHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000000 0011222233333333322221000000 11
Q ss_pred hhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653 215 DSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL 246 (301)
Q Consensus 215 ~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i 246 (301)
||.++ ..|.+|++.|+++.|+.+....+++.+
T Consensus 274 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i 353 (392)
T PRK12382 274 DRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGV 353 (392)
T ss_pred HhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 678899999999999999999999999
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
+|.+.+.+.++.|++..+.+.+++.+++.++.+...
T Consensus 354 g~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 354 SGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988888888777766543
No 43
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.67 E-value=2.4e-16 Score=138.65 Aligned_cols=111 Identities=10% Similarity=-0.032 Sum_probs=96.9
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+++++.++.+++++++.+++.|++.|++.|...+....++.|+.|+++|++..++...+..+|..+++.+
T Consensus 67 ~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 146 (382)
T PRK10091 67 LKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPL 146 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999888888888776
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.++..++..+..++++||.+
T Consensus 147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 147 GTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 543 9999999999988777665554788864
No 44
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.66 E-value=5.5e-16 Score=135.73 Aligned_cols=233 Identities=16% Similarity=0.102 Sum_probs=151.9
Q ss_pred cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccch--hcHHHHHHHHHHHHHHHhcc
Q psy16653 7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSAL--GSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~--~~~~~~~~~~G~~~~~~i~~ 84 (301)
...+..+.+++.++.+.+++++.+++.|++.|.+.+...|....++.|+.|+++|++. .+..+.+.++|..+++.++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~ 146 (375)
T TIGR00899 67 ILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAF 146 (375)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHH
Confidence 3345555667778888999999999999999988888888888899999988887754 56777777778877777765
Q ss_pred c-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653 85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS 159 (301)
Q Consensus 85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (301)
. +||+.|++.+++.++..+..++++||+|++...+.+ +.+
T Consensus 147 ~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~ 191 (375)
T TIGR00899 147 WLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------------------RLE 191 (375)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------------------cch
Confidence 3 899999999998887777666568998743110000 001
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc--
Q psy16653 160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS-- 219 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~-- 219 (301)
.++.+++++.+.. .....+.+. .......+.|.++.+ .|.+....... +.||.++
T Consensus 192 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~ 266 (375)
T TIGR00899 192 VRGLLASRDTRLL-FVACTLMWG----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR 266 (375)
T ss_pred hhhhhcCcchHHH-HHHHHHHHH----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh
Confidence 1112333322211 111111111 112223344444432 34332111000 2233222
Q ss_pred ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253 (301)
Q Consensus 220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~ 253 (301)
..|..|++ |+++.++.+...+++..++|.+.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~ 345 (375)
T TIGR00899 267 LMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGI 345 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888765 5799999999999999999999999
Q ss_pred HHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 254 LVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
+.+..|++..+.+.+++++++.++..+
T Consensus 346 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 346 LAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 999999988888888887777766544
No 45
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.65 E-value=6.1e-16 Score=137.33 Aligned_cols=111 Identities=11% Similarity=-0.040 Sum_probs=97.3
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+..++.+++++++++..+++++.++++|+++|++.+...+....++.|++|+++|++.++++.....+|..+++.+
T Consensus 80 rr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 159 (413)
T PRK15403 80 RRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLS 159 (413)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788889999999999999999999999999999987777788899999999999999999999988998888888
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.+++.++..+..++.+||++
T Consensus 160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 754 8999999999988887766554789875
No 46
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.64 E-value=2.3e-15 Score=133.35 Aligned_cols=243 Identities=14% Similarity=0.095 Sum_probs=156.0
Q ss_pred cccccccccCccccchhhh---hc-cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH-H
Q psy16653 3 PVTLNQLALPDGGVGYEIN---FK-ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI-L 77 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~---~~-~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~ 77 (301)
+|+.+..+..+++++.++. +. .++++.+++.|++.|++.+...+....++.|+.|+++||+.+++.+.+.++|. +
T Consensus 77 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~ 156 (402)
T TIGR00897 77 PLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGV 156 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776654 23 35777888999999999988888888899999999999999999999999886 5
Q ss_pred HHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy16653 78 YLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDA 152 (301)
Q Consensus 78 ~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (301)
+++.++.. ||+..++......++..++..++.+|.+. .++.+ ++ + +.++
T Consensus 157 ~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~--~---~~~~------- 210 (402)
T TIGR00897 157 FGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQHMQ-------TR--E---KFSE------- 210 (402)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------ccccc-------CC--c---chhh-------
Confidence 67766532 65544443333333333333324454321 00000 00 0 0000
Q ss_pred HhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhh
Q psy16653 153 AARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQD 215 (301)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~ 215 (301)
....+++++++|..+.... ..+ .+..+.+...+|.|.+.++.|.+....... +.|
T Consensus 211 ---~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d 282 (402)
T TIGR00897 211 ---LGKAATILFTNPNVLLGGM----VRI-INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD 282 (402)
T ss_pred ---HHHHHHHHHcChhHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345666663322221 111 122235667778888887777664332111 333
Q ss_pred hccc-----------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653 216 SLIS-----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI 242 (301)
Q Consensus 216 ~v~~-----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~ 242 (301)
|.++ ..|..| +.|+++.|+.+....+
T Consensus 283 r~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l 361 (402)
T TIGR00897 283 KLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGL 361 (402)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHH
Confidence 3221 556555 5799999999999999
Q ss_pred HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 243 GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 243 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
++.++|.+.+.+.+..|++.++++.+++.+++.++..+
T Consensus 362 g~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 362 SAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988898888888877766654
No 47
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.64 E-value=7.2e-17 Score=145.00 Aligned_cols=257 Identities=12% Similarity=-0.047 Sum_probs=158.6
Q ss_pred ccccccccCccccchhhhhccCCeeEEee-echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
|+.+..+..+++++.++++++++++.+.+ .|+++|++.|...+....++.|++| ++|++..++.+.+..+|..+++.+
T Consensus 84 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l 162 (455)
T TIGR00892 84 RPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPL 162 (455)
T ss_pred hHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHH
Confidence 55666777888899999999999988765 5799999998877788888999996 799999999999999988888776
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. |||+.|++.+++.++..+..++..++.+.. .+.+.++ . +.....+...+.+. +...+ +..+
T Consensus 163 ~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~~~~----~~~~~-~~~~ 231 (455)
T TIGR00892 163 NQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---EGLPPDGSTKKLSK----KSTAE-KINR 231 (455)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---ccCCCCCccccccc----cchhh-hhhh
Confidence 654 999999999998877665555333432211 0000000 0 00000000000000 00000 0011
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhh--cc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDS--LI 218 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~--v~ 218 (301)
....+++++|.++......... . .+.+....++|.++++.|.+....... +.|+ ..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~----~-~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~ 306 (455)
T TIGR00892 232 FLDFSLFTHRGFLVYLSGNVIM----F-LGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIR 306 (455)
T ss_pred hcchHHhcCchHHHHHHHHHHH----H-HHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 1112456666433222211111 1 113344456666666555442221111 1221 00
Q ss_pred c--------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHH
Q psy16653 219 S--------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVT 248 (301)
Q Consensus 219 ~--------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~ 248 (301)
. ..|.+|++.++++.|+.+....+++.++|
T Consensus 307 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp 386 (455)
T TIGR00892 307 PHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGP 386 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccc
Confidence 0 77889999999999999999999999999
Q ss_pred HHHHHHHHhhC-cchhHHHHHHHHHHHHHH
Q psy16653 249 LCFGFLVRHFG-SAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 249 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 277 (301)
.+.+.+.+..+ ++..|.+.+++.+++.+.
T Consensus 387 ~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 387 PLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred cceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 99999998774 777777777766665543
No 48
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.63 E-value=6.3e-16 Score=137.01 Aligned_cols=243 Identities=9% Similarity=-0.029 Sum_probs=157.6
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+..+..+.+++.++...+++++.+++.|++.|++.+ ..+....++.|+.|+++|++..++.+....+|.++++.++
T Consensus 84 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 162 (408)
T PRK09874 84 KIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG 162 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777888888888999999999999999754 5677788999999999999999999999999988888776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA 158 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
.. +||+.|++.++..++..+..++.+||+++.. .+.+..+.+
T Consensus 163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------- 209 (408)
T PRK09874 163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV-SKKEMLHMR-------------------------------- 209 (408)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc-cchhhhHHH--------------------------------
Confidence 54 8999999999888877766654677754210 000000000
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcc--hh-------------------hHhhhc
Q psy16653 159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPG--FS-------------------YIQDSL 217 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~--~~-------------------~l~~~v 217 (301)
+..+.++++..+............ ....+..+.+.+..+.+.+.+.. .. .+.||+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~ 285 (408)
T PRK09874 210 EVVTSLKNPKLVLSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI 285 (408)
T ss_pred HHHHhCcCCchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 011122232221111111111000 01112222232222221110000 00 022322
Q ss_pred cc------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHH
Q psy16653 218 IS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTL 249 (301)
Q Consensus 218 ~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~ 249 (301)
++ ..+..|++.|++..++.+....++..++|.
T Consensus 286 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~ 365 (408)
T PRK09874 286 GPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPL 365 (408)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHH
Confidence 22 456778899999999999999999999999
Q ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 250 CFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 250 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
+.+.+.++.|++..|.+.+++.+++.++.+...++
T Consensus 366 ~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 366 MGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888777664443
No 49
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.63 E-value=5.1e-16 Score=136.96 Aligned_cols=110 Identities=9% Similarity=-0.031 Sum_probs=95.0
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.++..+++++.++...+++++.+++.|+++|++.+...+....++.|++|+++|++..++.+....+|..+++.++
T Consensus 68 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~ 147 (392)
T PRK10473 68 KPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLG 147 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888999999999999999999999999999999999999999999999999999988888888887776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. +||+.|++.++.+++..++..+.+||++
T Consensus 148 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 148 HLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 43 8999999999888877776655778874
No 50
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.62 E-value=1.7e-15 Score=137.22 Aligned_cols=112 Identities=10% Similarity=-0.043 Sum_probs=99.5
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
.|+.+.++..+++++.++++.++++..+++.|+++|++.|...+....++.|++|+++|++..++++....+|..+++.+
T Consensus 66 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 145 (485)
T TIGR00711 66 TRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL 145 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 35677788889999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
+.. +||+.|++.+.++++..++.++.+||+++
T Consensus 146 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 146 GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 754 99999999988888777666656777553
No 51
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.62 E-value=3.2e-16 Score=141.55 Aligned_cols=245 Identities=11% Similarity=-0.013 Sum_probs=149.7
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH----
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL---- 79 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~---- 79 (301)
|+.+.++..+++++.++.++++++..+++.|++.|++.+.. +....+++|++|+++||++.++.+....+|..++
T Consensus 101 r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~ 179 (476)
T PLN00028 101 RYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM 179 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888888899999999999999999998764 4456789999999999999999876555555444
Q ss_pred HHhc-----c-----chhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHH
Q psy16653 80 YCLG-----L-----STYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQRE 149 (301)
Q Consensus 80 ~~i~-----~-----~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
+.+. . .+||+.|++.+++.++..+..+++.+|.|. ++.++.++ +. +.
T Consensus 180 ~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~-------~~-~~---------- 236 (476)
T PLN00028 180 PLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK-------SG-TM---------- 236 (476)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh-------cC-cc----------
Confidence 3321 1 279999999999998877776634444442 11111000 00 00
Q ss_pred HHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh----------------
Q psy16653 150 IDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY---------------- 212 (301)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~---------------- 212 (301)
++.+....+++.++++..+.. ...... ++.....+..+.|.++.+. |++.......
T Consensus 237 --~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G 309 (476)
T PLN00028 237 --PKDSFSKVLRYGVTNYRTWIL----ALTYGY-SFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGG 309 (476)
T ss_pred --ccccHHHHHHHHHcCchhHHH----HHHHHH-HHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhH
Confidence 000001123444555432211 111111 1111234556677776543 5553221111
Q ss_pred -Hhhhccc-------------------------------------------------------ccccCCcchhhhHHHHH
Q psy16653 213 -IQDSLIS-------------------------------------------------------MFDCIPFQVKGIATGIA 236 (301)
Q Consensus 213 -l~~~v~~-------------------------------------------------------~~e~~p~~~R~~~~~~~ 236 (301)
+.|++++ ..|+. ++.|+++.|+.
T Consensus 310 ~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~ 388 (476)
T PLN00028 310 YLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLT 388 (476)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhh
Confidence 4454321 44544 46899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653 237 VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 237 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
+..+++++.+++.+.+ ..+..++...|.+.+++.+++.++.++.
T Consensus 389 ~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 389 GAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 9988888888887654 2223457778888888877777666554
No 52
>PRK03699 putative transporter; Provisional
Probab=99.62 E-value=1.3e-15 Score=134.56 Aligned_cols=235 Identities=9% Similarity=-0.024 Sum_probs=157.4
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+....+..+++++.++.+++++++.+++.|++.|++.|...+....++.|++|+++|++..++.+....+|..+++.+.
T Consensus 72 r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 151 (394)
T PRK03699 72 KRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA 151 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888899999999999999999999999999999999999999999999999999988877777776666553
Q ss_pred c-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 84 L-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 84 ~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
. . +||+.|.+.+++.++..++.+ + .+.|+. .+.+. +++ + +
T Consensus 152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~-~-~~~p~~--~~~~~-----------~~~-----------------~-~- 197 (394)
T PRK03699 152 AYLLARSIEWYWVYACIGLVYVAIFILTL-F-SEFPAL--GKHAP-----------KAD-----------------K-P- 197 (394)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHH-h-cCCccc--cccCc-----------ccc-----------------C-c-
Confidence 2 2 899999998888877665544 2 232310 00000 000 0 0
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------Hhhhccc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------IQDSLIS 219 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l~~~v~~ 219 (301)
..++.+ ++ +........+. ...+.+.+..|.|.++++. |++....... +.||+++
T Consensus 198 -~~~~~~-~~----~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~ 270 (394)
T PRK03699 198 -VAKEKW-GI----GVLFLAIAALL-YILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDL 270 (394)
T ss_pred -cccccC-Ch----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 000001 11 22222222222 2223456778899998654 6553222111 3444333
Q ss_pred ------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF 251 (301)
Q Consensus 220 ------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~ 251 (301)
..|..|.+ ++...+.....+.+++.++|.+.
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~ 349 (394)
T PRK03699 271 QRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVT 349 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555543 57788899999999999999999
Q ss_pred HHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 252 GFLVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 252 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
+++.+..|++..++..+++++++.+++..
T Consensus 350 G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 350 SPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 99999999988888877777776654433
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.61 E-value=4.1e-15 Score=128.50 Aligned_cols=249 Identities=14% Similarity=0.047 Sum_probs=159.7
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++....++++.+.+.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.+
T Consensus 63 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 142 (352)
T cd06174 63 RRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLL 142 (352)
T ss_pred CchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHH
Confidence 46677788888889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
+.. +||+.+++.+++.++..+... +++ |+.... -...-... .......... .
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--------~~~~~~~~---~~~~~~~~~~---------~ 199 (352)
T cd06174 143 GGLLAESLGWRWLFLILAILGLLLALLLL-FLL--RLLLLL--------ALAFFLLS---FGYYGLLTYL---------P 199 (352)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHH--------HHHHHHHH---hHHHHHHHHH---------H
Confidence 765 799999999998888777766 444 211000 00000000 0000000000 0
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh------------Hhhh---------
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY------------IQDS--------- 216 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~------------l~~~--------- 216 (301)
.-..+.+... ........... ..... ........+.+..+......... ..++
T Consensus 200 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (352)
T cd06174 200 LYLQEVLGLS-AAEAGLLLSLF-GLGGI----LGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273 (352)
T ss_pred HHHHHhcCCC-HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 0001111111 11111111111 11111 11111111222221110000000 0000
Q ss_pred ---c----------ccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 217 ---L----------ISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 217 ---v----------~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
+ ....|..|++.|++..|+.+...+++..+++.+.+.+.+..+++..+.+.+++.+++.++.++
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 0 008899999999999999999999999999999999999889988999988888887776654
No 54
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.61 E-value=4.1e-15 Score=135.16 Aligned_cols=112 Identities=10% Similarity=-0.118 Sum_probs=97.4
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYLYC 81 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~~~ 81 (301)
+|+.+.++..++++++++++++++++.++++|+++|+|.|...+.....+.+++ |+++|++..+++.....+|..+++.
T Consensus 70 rk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~ 149 (495)
T PRK14995 70 FKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL 149 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999998888887776665 7899999999999999999999988
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
++.. +||+.|++.....++.+++..+++||+|.
T Consensus 150 lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~ 187 (495)
T PRK14995 150 VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG 187 (495)
T ss_pred HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 8765 99999999988887776666657888763
No 55
>PRK10504 putative transporter; Provisional
Probab=99.61 E-value=3.7e-15 Score=134.73 Aligned_cols=110 Identities=11% Similarity=-0.030 Sum_probs=94.1
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+..+..+++++.+++.++++++.+++.|+++|++.|...+....++.|++|+++|++..++.+....+|..+++.++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 75 RNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 55666777788888888889999999999999999999999999999999999999999999999998888988888776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. +||+.|++......+..++.....|+++
T Consensus 155 g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 155 GLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 54 9999999988877776666664556544
No 56
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.61 E-value=1.2e-15 Score=134.98 Aligned_cols=109 Identities=9% Similarity=-0.014 Sum_probs=94.1
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+++..+..+.+++.++...+++++.+.+.|+++|++.|...|....++.|+.|+++|++..++.+....+|..+++.+
T Consensus 75 ~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 75 AKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888889999999999999999999999999988888899999999999999999999999999999998888
Q ss_pred ccc----hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
+.. +||+.|++.++..++..++..++.||
T Consensus 155 ~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 155 GSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 765 99999999888877665554435665
No 57
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.61 E-value=2.9e-15 Score=135.72 Aligned_cols=239 Identities=12% Similarity=0.045 Sum_probs=155.4
Q ss_pred cccccCccccchhhhhcc---CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 7 NQLALPDGGVGYEINFKE---TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
+..+....+++....++. .+++.+.+.+++.|++.+...+...+++.|++|+++||+..++.+.+..+|.+++..+.
T Consensus 84 ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~ 163 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA 163 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555454 46667888999999999889999999999999999999999999999999988887554
Q ss_pred c-----c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhcc
Q psy16653 84 L-----S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKK 157 (301)
Q Consensus 84 ~-----~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
. . |||..|++.++..++..+..+ ++||+++.- +.++ ... +...
T Consensus 164 ~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~----~~~~-------------~~~-------------~~~~ 212 (491)
T PRK11010 164 LWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTI----PVPK-------------TLE-------------QAVV 212 (491)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc----cccc-------------chh-------------hhHH
Confidence 3 2 899999999988888777666 688876321 0000 000 0001
Q ss_pred chhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHH-HhcCCCCCcchhh------------------Hhhhcc
Q psy16653 158 ASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIF-KSAGSTLDPGFSY------------------IQDSLI 218 (301)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~~~~~~~------------------l~~~v~ 218 (301)
.++++.++++..+..... ..+... +......+.+.++ ++.|++.+..... +.||++
T Consensus 213 ~~l~~~~~~~~~~~~ll~-~~l~~~----~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g 287 (491)
T PRK11010 213 APLRDFFGRNNAWLILLL-IVLYKL----GDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLS 287 (491)
T ss_pred HHHHHHHcCcCHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123444444422221111 111111 1222233334343 3344442211100 122211
Q ss_pred c----------------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHH
Q psy16653 219 S----------------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFL 246 (301)
Q Consensus 219 ~----------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i 246 (301)
. ..++.|++.+++..++.+....++..+
T Consensus 288 ~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~ 367 (491)
T PRK11010 288 LFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY 367 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 678889999999999999999999998
Q ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653 247 VTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
++.+.+.+.+..||+..|.+.+++++++.++.+..
T Consensus 368 ~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 368 VGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999888888888888877666654
No 58
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.60 E-value=1.2e-15 Score=132.70 Aligned_cols=103 Identities=9% Similarity=-0.192 Sum_probs=87.2
Q ss_pred ccccccccCccccchhhhhccC-----CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKET-----RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY 78 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~ 78 (301)
|+.+.++..+.+++.++..... +++.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|.++
T Consensus 64 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 143 (365)
T TIGR00900 64 KKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIV 143 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666666677777766666 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
++.++.. +||+.|++.++..++..+..+
T Consensus 144 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 144 GPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 9888765 999999998887766555444
No 59
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.60 E-value=4.6e-15 Score=130.46 Aligned_cols=234 Identities=9% Similarity=-0.056 Sum_probs=153.8
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.++..+.+++.++.+.+++++.+++.|+++|++.|...+.....+.|..++++|++.++.++.+.++|..+++.++
T Consensus 71 k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 71 NRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888889999999999999999999999999998888888888999999999999999999999999999887
Q ss_pred cc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653 84 LS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS 159 (301)
Q Consensus 84 ~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (301)
.. .++...+..+........+.+...+|++. + + ++..+
T Consensus 151 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------------~-------------------~~~~~ 192 (381)
T PRK03633 151 SKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA------E-------------N-------------------HDSTS 192 (381)
T ss_pred hcccccccchHHHHHHHHHHHHHHHHHhcccCCCC------C-------------C-------------------CCCCC
Confidence 65 22222333222222222222112222110 0 0 00112
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc---
Q psy16653 160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS--- 219 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~--- 219 (301)
.++.+++|..+. ....+.... ........+.|.++++.|.+.+..... +.||.++
T Consensus 193 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~ 267 (381)
T PRK03633 193 IWPMLKLRQARL-GVNGCIISG----IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV 267 (381)
T ss_pred HHHHHHhcchHH-HHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH
Confidence 334455543221 111111111 113344556787777766553221111 3344322
Q ss_pred ------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16653 220 ------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH 257 (301)
Q Consensus 220 ------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~ 257 (301)
..|..|++.++.+.+..+....+|..++|.+.+++.++
T Consensus 268 l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~ 347 (381)
T PRK03633 268 LRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN 347 (381)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888999999999999999999
Q ss_pred hCcchhHHHHHHHHHHHHHHhhe
Q psy16653 258 FGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
.+++..|.+.+.+.++..+..+.
T Consensus 348 ~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 348 YSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred hCccHHHHHHHHHHHHHHHHHHh
Confidence 99988888888777766655544
No 60
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.60 E-value=4.5e-15 Score=131.63 Aligned_cols=110 Identities=8% Similarity=-0.103 Sum_probs=93.0
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.++..+++++.++...+++++.+++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++
T Consensus 78 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 157 (406)
T PRK15402 78 RPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVG 157 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778888889999999999999999999999999988899999999999999999998888877777777777665
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. +||+.|++.++..++..+..++.+||++
T Consensus 158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 43 9999999999888877766554678875
No 61
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.59 E-value=5.9e-15 Score=129.64 Aligned_cols=111 Identities=18% Similarity=0.058 Sum_probs=97.0
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.+
T Consensus 69 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 148 (385)
T TIGR00710 69 RRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL 148 (385)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.++..++..+..++..||++
T Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 149 GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 754 8999999998888877766664678765
No 62
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.58 E-value=5.1e-15 Score=131.01 Aligned_cols=234 Identities=10% Similarity=-0.032 Sum_probs=164.6
Q ss_pred cccccccccCccccchhhhhcc-----CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKE-----TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 77 (301)
||+...+++.+.++..++.+++ ++++.+++.|++.|++ |..++.....+++|+|+++||++.++.....++|..
T Consensus 99 ~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~ 177 (462)
T PRK15034 99 GRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVS 177 (462)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHH
Confidence 5677888888888898888876 8999999999999998 789999999999999999999999999665556655
Q ss_pred HHHHhcc----------------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcC
Q psy16653 78 YLYCLGL----------------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRG 134 (301)
Q Consensus 78 ~~~~i~~----------------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~ 134 (301)
++..+.. . +||...++..++.++..++.++.++|.|. .
T Consensus 178 l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~---------------- 238 (462)
T PRK15034 178 VMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---S---------------- 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---c----------------
Confidence 4333220 1 58999999888888877777745454331 0
Q ss_pred CCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchh-h-
Q psy16653 135 SRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFS-Y- 212 (301)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~- 212 (301)
+.+..+..+.+|+|+.|...++ ++..+.++..+.+++|++.++. ++...... .
T Consensus 239 -------------------~~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~ 293 (462)
T PRK15034 239 -------------------RASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAF 293 (462)
T ss_pred -------------------ccCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHH
Confidence 0011234556777743332222 2334445666778888888774 33111111 0
Q ss_pred ---------------Hhhhccc------------------------------------------------------cccc
Q psy16653 213 ---------------IQDSLIS------------------------------------------------------MFDC 223 (301)
Q Consensus 213 ---------------l~~~v~~------------------------------------------------------~~e~ 223 (301)
+.||+++ +...
T Consensus 294 l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~ 373 (462)
T PRK15034 294 FGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVI 373 (462)
T ss_pred HHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHH
Confidence 5566444 5666
Q ss_pred CCc---------------------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhee
Q psy16653 224 IPF---------------------QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 224 ~p~---------------------~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
+|+ +.-|..+|+....+.+|+++.|.+++...+..| +...|..+.+.+++|.++.+.+
T Consensus 374 f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~ 453 (462)
T PRK15034 374 FRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV 453 (462)
T ss_pred HhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 664 145788999999999999999999998888766 4456778888888888776653
No 63
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.57 E-value=5.7e-16 Score=134.20 Aligned_cols=111 Identities=14% Similarity=0.034 Sum_probs=94.1
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++..++++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|.++++.+
T Consensus 61 ~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l 140 (352)
T PF07690_consen 61 RRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLL 140 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccch
Confidence 35667777888888866666667778999999999999999999999999999999999999999999999999999888
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.+++.++..++..++++|+|
T Consensus 141 ~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 141 GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---S
T ss_pred hhhhhhccccccccccccchhhhhhhhHhhhhhhcc
Confidence 765 8999999999999998876444666655
No 64
>PRK11043 putative transporter; Provisional
Probab=99.57 E-value=1.3e-14 Score=128.50 Aligned_cols=110 Identities=10% Similarity=0.000 Sum_probs=92.1
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+..+..+.+++.++..++++++.+++.|+++|++.+...+....++.|+.|+++|++..+.......+|..+++.+
T Consensus 70 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 149 (401)
T PRK11043 70 RKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL 149 (401)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888999999999999999999999999988888888999999999999999888877777777777766
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.+++.++..+..+ +++|++
T Consensus 150 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 184 (401)
T PRK11043 150 GAWLLNHFGWQAIFATLFAITLLLILPTL-RLKPSK 184 (401)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence 543 999999999988888777666 566554
No 65
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.56 E-value=2.7e-14 Score=126.09 Aligned_cols=108 Identities=10% Similarity=-0.033 Sum_probs=88.9
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+++.++..+++++++.++++.+. ++.|+++|++.|...|...+++.|+.|+++|+++.++.+.....|.++++.+
T Consensus 67 rr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~l 143 (393)
T PRK11195 67 KGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVL 143 (393)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887777664 7889999999999999999999999999999999999999999999999999
Q ss_pred ccc----hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653 83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
++. .|+..+.+.+...++..+... .+||+|.
T Consensus 144 gG~l~~~~~~~~~~i~~~~~~~~~~~~~-~l~~~~~ 178 (393)
T PRK11195 144 GGALADPHAEAALAVCALIYLLAALFNL-FIPRLGA 178 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCcc
Confidence 876 566666666555444444444 7898763
No 66
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.56 E-value=1.9e-14 Score=127.05 Aligned_cols=107 Identities=14% Similarity=0.104 Sum_probs=79.5
Q ss_pred cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCc--cchhcHHHHHHHHHHHHHHHhcc
Q psy16653 7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYL--SALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
+..+..+.+++.++.+++.+++.+++.+.+.|...+...|....++.|+.++++| +...++.+.+.++|.++++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~ 164 (393)
T PRK15011 85 IVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAY 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444555567777778888888876655554444456778888888998877666 34557888888888888888875
Q ss_pred c-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
. |||..|++.++..++..+..++++||+|
T Consensus 165 ~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 165 ALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence 4 9999999999888877776665788875
No 67
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.56 E-value=8.1e-15 Score=124.76 Aligned_cols=239 Identities=15% Similarity=0.069 Sum_probs=176.5
Q ss_pred cccccccccCccccchhhhhccCCee---EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTV---SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
||+...+++.+..+-.+..+++.+.. .+++.+++.|++- +.+++...++++|+||+++|.+++++. ..++|..+.
T Consensus 78 gR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~ 155 (417)
T COG2223 78 GRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA 155 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence 56677777888888888888887777 9999999999975 689999999999999999999999999 888888877
Q ss_pred HHhccc-----h---hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy16653 80 YCLGLS-----T---YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREID 151 (301)
Q Consensus 80 ~~i~~~-----~---Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (301)
..++.. + ||..-.+..++.++..++.++.+.|.|..-..++..
T Consensus 156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~----------------------------- 206 (417)
T COG2223 156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQ----------------------------- 206 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccccc-----------------------------
Confidence 777654 6 999999999988888888876777777431000000
Q ss_pred HHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhh-----------------H
Q psy16653 152 AAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSY-----------------I 213 (301)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~-----------------l 213 (301)
.+...+.++++++.|. +.+.++..|.++-.+..++|.++++. |.+....-.. +
T Consensus 207 ----~~~~~~~v~~~~~~W~-----lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~L 277 (417)
T COG2223 207 ----LPAQLKAVFSNKDTWL-----LSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWL 277 (417)
T ss_pred ----chhHHHHHhcCcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchh
Confidence 0023455555654332 22334456666788999999999986 4442221111 6
Q ss_pred hhhccc-------------------------------------------------------ccccCCcchhhhHHHHHHH
Q psy16653 214 QDSLIS-------------------------------------------------------MFDCIPFQVKGIATGIAVA 238 (301)
Q Consensus 214 ~~~v~~-------------------------------------------------------~~e~~p~~~R~~~~~~~~~ 238 (301)
+||++. ++..+|.+ -|...|+...
T Consensus 278 sDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga 356 (417)
T COG2223 278 SDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGA 356 (417)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHH
Confidence 777555 55555554 4778999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheec
Q psy16653 239 VNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 239 ~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
.+.+|++..|..++...+..| +...|.++..+++++.+..+...
T Consensus 357 ~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 357 IGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred hccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 66778888888888887665533
No 68
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.54 E-value=1.1e-14 Score=127.74 Aligned_cols=111 Identities=15% Similarity=0.076 Sum_probs=96.7
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++...+++++.+++.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.+
T Consensus 55 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 55 RKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888888999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.+++.++..+...+.+||++
T Consensus 135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 135 GGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 654 8999999998888877666554778864
No 69
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.52 E-value=1.3e-13 Score=128.12 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=119.7
Q ss_pred eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------------
Q psy16653 27 TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--------------------- 85 (301)
Q Consensus 27 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--------------------- 85 (301)
+..++++|+++|+|.+..++.+..|+.|++|+++|+++.++++.+..+|..+++++++.
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~ 251 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPT 251 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCC
Confidence 44567899999999999999999999999999999999999999999999999887532
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhcccccc-hhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccc
Q psy16653 86 ------TYTVIAIGCLAVPILLLVLFFLVVPET-PIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKA 158 (301)
Q Consensus 86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
+||..|++.+++.++..+..+ ++|+. |+.- .+.+.++.++. +.++.+.....+ . ....+....
T Consensus 252 dprWiGaWwl~Fli~g~l~~l~~v~l~-~~p~~lp~~~-~~~~~~~~~~~--~~~~~~~~~~~~---~---~~~~~~~~~ 321 (633)
T TIGR00805 252 DPRWIGAWWIGFLICGGVALLTSIPFF-FFPKALPKEG-KRVNVDVHETE--KLEKSEDKSRKK---N---SDITKDFPK 321 (633)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH-hCccccCCcc-cccchhhhhhh--cccccccccchh---h---hhhHHHHHH
Confidence 288889999999988777665 66654 3210 00010000000 000000000000 0 000011123
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHHH
Q psy16653 159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAV 237 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~ 237 (301)
.+++++++|.++...+.... ...+.+.+..|+|.++++. |++ ....++..
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~-----~~~~~~~~~~~lP~yl~~~~g~s------------------------~~~ag~l~ 372 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVI-----DSLAFNGYITFLPKYLENQYGIS------------------------SAEANFLI 372 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCc------------------------HHHHHHHh
Confidence 46678888744333333222 2223677888999999874 544 22233333
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhCc
Q psy16653 238 AVNWI-GAFLVTLCFGFLVRHFGS 260 (301)
Q Consensus 238 ~~~~~-~~~i~~~~~~~l~~~~~~ 260 (301)
....+ +.+++.++.+++.+..+.
T Consensus 373 ~~~~i~~~~vG~~l~G~l~~r~~~ 396 (633)
T TIGR00805 373 GVVNLPAAGLGYLIGGFIMKKFKL 396 (633)
T ss_pred hhhhhhHHHHHHhhhhheeeeecc
Confidence 33333 456777777888887664
No 70
>PRK10054 putative transporter; Provisional
Probab=99.50 E-value=3.2e-14 Score=125.61 Aligned_cols=110 Identities=13% Similarity=-0.023 Sum_probs=92.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++..++++++.+++.|.+.|.+.+...+....+..|..|+++|++..++.....++|..+++.+
T Consensus 72 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l 151 (395)
T PRK10054 72 KKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPL 151 (395)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777888888888899998888889988888777888899999999999999999999999999999999888
Q ss_pred ccc----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 83 GLS----TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 83 ~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
+.. +||..|++.++..++..+...+++||+
T Consensus 152 ~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 152 GTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 766 899999998888777655554356654
No 71
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.45 E-value=3.3e-13 Score=118.74 Aligned_cols=216 Identities=12% Similarity=-0.011 Sum_probs=142.8
Q ss_pred hhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHH
Q psy16653 20 INFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGC 94 (301)
Q Consensus 20 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~ 94 (301)
....+++++.+++.|.++|.+.+...|....+..|+ +++|++..+......++|.++++.++.. |||..|++.
T Consensus 87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 444678899999999999999888889888888775 5788999999999999999999887655 999999887
Q ss_pred HHHHHHHHHHHhcccccch-hHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHH
Q psy16653 95 LAVPILLLVLFFLVVPETP-IYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRAL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~~~~~Esp-~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
.+...+.+ +.. .++|++ +. ++ ++ + +++++..+.++++++|..+...
T Consensus 165 ~~~~~~~~-~~~-~~~~~~~~~----~~-~~-----------~---------------~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 165 TAGLAFML-IGF-LIKPTIPPK----DA-IP-----------E---------------DESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHH-HHH-HcCCCCCCC----cc-cc-----------c---------------cccccchhHHHHHcChHHHHHH
Confidence 66533333 333 334432 10 00 00 0 0000112356677776443333
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-----------------
Q psy16653 174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS----------------- 219 (301)
Q Consensus 174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~----------------- 219 (301)
....+... +......+.|.++++.|.+.+..... +.||.+.
T Consensus 212 ~~~~l~~~-----~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~ 286 (382)
T TIGR00902 212 AAVCLIQG-----AHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAI 286 (382)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 22222221 24556667888888877663322111 2233222
Q ss_pred -------------------------------ccccCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhCcchhHHHH
Q psy16653 220 -------------------------------MFDCIPFQVKGIATGIAVA-VNWIGAFLVTLCFGFLVRHFGSAATFWIF 267 (301)
Q Consensus 220 -------------------------------~~e~~p~~~R~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 267 (301)
+.+. |++.|+++.++.+. ...++..+++.+.|++.|+.|. ..|.+.
T Consensus 287 ~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~ 364 (382)
T TIGR00902 287 IGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM 364 (382)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 6676 99999999999874 5668889999999999999986 667777
Q ss_pred HHHHHHHHHH
Q psy16653 268 TVCCVVGTVF 277 (301)
Q Consensus 268 ~~~~~~~~~~ 277 (301)
+++.+++.++
T Consensus 365 ~~~~~~~~~~ 374 (382)
T TIGR00902 365 AIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHH
Confidence 7777766544
No 72
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.44 E-value=4.7e-13 Score=118.57 Aligned_cols=109 Identities=9% Similarity=-0.080 Sum_probs=85.0
Q ss_pred cccccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC 81 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~ 81 (301)
+.+.++..+.+++....++.+ +++.+.+..++.+...+...+...+++.|+.|+++|++..++...+..+|.+++..
T Consensus 69 ~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~ 148 (402)
T PRK11902 69 GWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGG 148 (402)
T ss_pred hHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 356666666666666666653 45566777777788888888999999999999999999999999999999988877
Q ss_pred hccc------hhHHHHHHHHHHHHHHHHHHhcccccchh
Q psy16653 82 LGLS------TYTVIAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 82 i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
++.. |||..|++.++..++..+..+ ++||+++
T Consensus 149 l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~~ 186 (402)
T PRK11902 149 LALWLADRVLGWGNTYLLMAGLMLAGALTTL-WAPEPEV 186 (402)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcc
Confidence 5432 899999999988877666555 7788753
No 73
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.43 E-value=3.9e-13 Score=134.06 Aligned_cols=112 Identities=13% Similarity=-0.094 Sum_probs=80.7
Q ss_pred ccccccccCccccch---hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGY---EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+++.++..+..++. .+...+.+++.+++.|+++|++.|...+....++.|++|+++|++++++.+.+..+|.++++
T Consensus 77 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~ 156 (1146)
T PRK08633 77 NRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGT 156 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHH
Confidence 344444544433333 33445678999999999999999999999999999999999999999999999999999988
Q ss_pred Hhccc--------------hhHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653 81 CLGLS--------------TYTVIAIGCLAVPILLLVLFFLVVPETPIY 115 (301)
Q Consensus 81 ~i~~~--------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~ 115 (301)
.++.. +|++.+.+..+...++.++..+.+||+|..
T Consensus 157 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 157 ALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 87654 234444444444333333333378888753
No 74
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.43 E-value=4.6e-13 Score=118.28 Aligned_cols=111 Identities=13% Similarity=0.017 Sum_probs=94.5
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++...+++++.+++.|++.|++.|...+....+..|..++++|++..++.+.+..+|..+++.+
T Consensus 72 rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i 151 (394)
T PRK11652 72 RRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI 151 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888889999999999999999999999999988888888899999999999999999999999888888777
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.. +||+.|++.++..++..+...+++||++
T Consensus 152 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 152 GGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 644 8999999998887766655544788875
No 75
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.41 E-value=7.6e-13 Score=115.54 Aligned_cols=110 Identities=9% Similarity=-0.133 Sum_probs=83.4
Q ss_pred ccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 4 VTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
|+.+.++..+.+++.++..+++ +++.+++.|+++|++.+ ..+....+++|++|+++|++..++......+|..+++.+
T Consensus 67 r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 67 RYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 5667778888899999999999 99999999999999865 556778899999999999999999886555555555443
Q ss_pred cc--------------c-hhHHHH-HHHHHHHHHHHHHHhcccccchh
Q psy16653 83 GL--------------S-TYTVIA-IGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 83 ~~--------------~-~Wr~~f-~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
+. . +||+.| +..++...+..++.++..+|+|+
T Consensus 146 ~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (366)
T TIGR00886 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP 193 (366)
T ss_pred HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence 21 1 699999 44455555555444446777763
No 76
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.38 E-value=2.7e-12 Score=114.17 Aligned_cols=247 Identities=11% Similarity=0.060 Sum_probs=148.1
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhh----hh----ccCCCCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNML----QK----EGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~----i~----e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
|+.+.++..+.+++..+..+.++++.+.+.|++.|++.+...+..... .. |......|.|..+. .+..+|
T Consensus 69 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~--lG~~ig 146 (418)
T TIGR00889 69 QKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT--IGFIAA 146 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh--HHHHHH
Confidence 445666677777788888888889999999999999876666654433 22 44444556666663 455555
Q ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653 76 ILYLYCLGLS-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA 154 (301)
Q Consensus 76 ~~~~~~i~~~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
..++..++.. .|+ .|++.++..++..++.+ ++||+|+- +.+ ++ . +.. + .
T Consensus 147 ~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~---~~~-~~----------~--~~~-----------~-~ 196 (418)
T TIGR00889 147 MWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVA---KST-AK----------M--SIK-----------V-M 196 (418)
T ss_pred HHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCC---ccc-cc----------c--CHH-----------H-H
Confidence 5555544333 465 45566666666666555 88998631 000 00 0 000 0 0
Q ss_pred hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcc------hhh----------------
Q psy16653 155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPG------FSY---------------- 212 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~------~~~---------------- 212 (301)
.+.+.++.+++|.++...+..+..... ......+.+.++.+.|.+.... ...
T Consensus 197 -~~~~~~~~~k~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~ 270 (418)
T TIGR00889 197 -LGLDAFILFKNKRMAIFFFFSMLLGAP-----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILT 270 (418)
T ss_pred -hhhhHHHHhcCCCeeeHHHHHHHHHhH-----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 011223455565433322222222221 1222344455555544331110 000
Q ss_pred ---Hhhhccc----------------------------------------------------ccccCCcchhhhHHHHHH
Q psy16653 213 ---IQDSLIS----------------------------------------------------MFDCIPFQVKGIATGIAV 237 (301)
Q Consensus 213 ---l~~~v~~----------------------------------------------------~~e~~p~~~R~~~~~~~~ 237 (301)
+.||+++ ++|.+|++.|+++.|+.+
T Consensus 271 ~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~ 350 (418)
T TIGR00889 271 IPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFT 350 (418)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 2222211 789999999999999997
Q ss_pred -HHHHHHHHHHHHHHHHHHHhh------CcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653 238 -AVNWIGAFLVTLCFGFLVRHF------GSAATFWIFTVCCVVGTVFTFMVVPETKGK 288 (301)
Q Consensus 238 -~~~~~~~~i~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 288 (301)
....++..++|.+.+.+.++. ||+..|.+.+++.++++++.+++.||+++.
T Consensus 351 ~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 351 LMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 567899999999999999984 477788888888888888888888887554
No 77
>PRK10133 L-fucose transporter; Provisional
Probab=99.37 E-value=1.8e-12 Score=115.88 Aligned_cols=81 Identities=11% Similarity=-0.120 Sum_probs=69.8
Q ss_pred cccccccccCccccchhhh---hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEIN---FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
+|+.+.+++.+++++.+++ ..++++..++++|+++|+|.|...+....++.|+.|+++|.+.+++.+....+|..++
T Consensus 90 ~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g 169 (438)
T PRK10133 90 YKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Confidence 4667888889999998875 5689999999999999999999999999999999888887777888888888888888
Q ss_pred HHhc
Q psy16653 80 YCLG 83 (301)
Q Consensus 80 ~~i~ 83 (301)
+.++
T Consensus 170 ~~~g 173 (438)
T PRK10133 170 VVFG 173 (438)
T ss_pred HHHH
Confidence 7653
No 78
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.36 E-value=2e-12 Score=128.88 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=81.6
Q ss_pred cchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHH
Q psy16653 16 VGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVI 90 (301)
Q Consensus 16 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~ 90 (301)
...++.....+++.++++|+++|++.+...|...+++.|++|+++|++++++.+++.++|.++++.+++. +|++.
T Consensus 97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~ 176 (1140)
T PRK06814 97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVIL 176 (1140)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 3334444558899999999999999999999999999999999999999999999999999999999876 89999
Q ss_pred HHHHHHHHHHHHHHHhcccccch
Q psy16653 91 AIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 91 f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
|....+..++.+++.+ ++|+++
T Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~ 198 (1140)
T PRK06814 177 VALLMGIAVLGWLASL-FIPKTG 198 (1140)
T ss_pred HHHHHHHHHHHHHHHh-hCCCCC
Confidence 9666666665555555 777764
No 79
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.35 E-value=3.3e-12 Score=114.29 Aligned_cols=108 Identities=16% Similarity=0.034 Sum_probs=80.7
Q ss_pred ccccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHH
Q psy16653 6 LNQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILY 78 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~ 78 (301)
.+.++...++++.++....++. ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++
T Consensus 72 ~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l 151 (437)
T TIGR00792 72 WLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL 151 (437)
T ss_pred hHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777776653 34456677778877777777788889987 5789999999988888887665
Q ss_pred HHHhc-----------cc-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 79 LYCLG-----------LS-TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 79 ~~~i~-----------~~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+..+. .. +||+.+.+.++++++..+..++.++|.+
T Consensus 152 ~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 152 VAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 54331 12 8999999999999888777765788865
No 80
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.35 E-value=5e-12 Score=110.13 Aligned_cols=107 Identities=12% Similarity=-0.088 Sum_probs=80.8
Q ss_pred cccccCccccchhhhhccC---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 7 NQLALPDGGVGYEINFKET---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
+..+..+.++.....++.. +.+.+....++.+...+...+...+++.|++|+++|+++.++.+.+..+|.++++.++
T Consensus 60 l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~ 139 (356)
T TIGR00901 60 LVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLA 139 (356)
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555553 3334555666777777778888899999999999999999999999999999988886
Q ss_pred cc-----h--------hHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS-----T--------YTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~-----~--------Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. + ||..|++.++..++..+..++..||++
T Consensus 140 ~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 140 LVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 43 6 999999999988877766653467753
No 81
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.34 E-value=2.5e-12 Score=114.02 Aligned_cols=103 Identities=12% Similarity=-0.093 Sum_probs=85.9
Q ss_pred ccccccccCccccchhhhhc---cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFK---ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+...+++.+++++.++... .++++.+++.|++.|+|.|...+....++.|..|+++|++..++.+....+|..+++
T Consensus 68 r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~ 147 (410)
T TIGR00885 68 KAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGM 147 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888877533 468889999999999999999999999999999999999999999998888888887
Q ss_pred Hhccc-------------------------------hhHHHHHHHHHHHHHHHHHHh
Q psy16653 81 CLGLS-------------------------------TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 81 ~i~~~-------------------------------~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
.++.. +||++|++.+++.++..++..
T Consensus 148 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 148 VVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred HHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66431 499999999988877665543
No 82
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.31 E-value=1.2e-12 Score=114.66 Aligned_cols=193 Identities=8% Similarity=-0.025 Sum_probs=127.1
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+++.+++..+++..++.++++++..+.+.|++.|+++|+.. ....|+..|+|+++|+++.+++..+..+|.++++++
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999999999999999 999999999999999999999999999999999988
Q ss_pred ccc----hhHHHHHHH---HHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHH--HHH
Q psy16653 83 GLS----TYTVIAIGC---LAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREI--DAA 153 (301)
Q Consensus 83 ~~~----~Wr~~f~~~---~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 153 (301)
+.. |||..+.+. .....+.+++.+ ++|-.++-+.-+++.+.......+....+.+...+..+..+.. ..-
T Consensus 170 ~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (511)
T TIGR00806 170 GQLLVTLGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFL 248 (511)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHH
Confidence 765 888755543 333344444554 8896666554443221100000000111001000000000000 000
Q ss_pred hhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc
Q psy16653 154 ARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA 202 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 202 (301)
+.-..++++..++ +.++-..+|+....+|++-+.+|.-.+.+..
T Consensus 249 ~~l~~~~~~~y~n-----~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v 292 (511)
T TIGR00806 249 VRMLSELVTIYRN-----PQLLLWSLWWVFNSAGYYLITYYVHTLWGTL 292 (511)
T ss_pred HHHHHHHHHHhcC-----cchhhhhHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 0011223333444 3455566777777778889999998888776
No 83
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.31 E-value=1.4e-11 Score=107.19 Aligned_cols=96 Identities=14% Similarity=-0.005 Sum_probs=77.3
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+.+.++..+.+++.+.. .+++++.+++.|++.|++.|...+....++.|++| ++|++..++.+.+..+|..+++.+.
T Consensus 65 r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 65 ERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred hHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 556666776777777777 77888999999999999999888888889999986 6899999999999888888877665
Q ss_pred cc-------hhHHHHHHHHHHHHHH
Q psy16653 84 LS-------TYTVIAIGCLAVPILL 101 (301)
Q Consensus 84 ~~-------~Wr~~f~~~~~~~~~~ 101 (301)
.. +||+.|.+.+++.++.
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33 3999998877655443
No 84
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.30 E-value=2.6e-11 Score=106.69 Aligned_cols=214 Identities=13% Similarity=0.024 Sum_probs=133.9
Q ss_pred hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q psy16653 21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCL 95 (301)
Q Consensus 21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~ 95 (301)
...+++++.+++.|++.|++.+...|...+++.++ +++|++..+..+.+.++|..+++.++.. |||..|++.+
T Consensus 88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 34568889999999999999888888888888877 4568888888888888888888888765 9999999888
Q ss_pred HHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHH
Q psy16653 96 AVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALII 175 (301)
Q Consensus 96 ~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (301)
+..++..+... ..||.++ +++.++ +.++...++++++++|..+.....
T Consensus 166 ~~~~~~~~~~~-~~~~~~~----~~~~~~---------------------------~~~~~~~~~~~i~~~~~~~~~~~~ 213 (382)
T PRK11128 166 AGVASMLLGQL-LRPTIMP----QGESRQ---------------------------QESAGWPAWKALLKEPTVWRFLLC 213 (382)
T ss_pred HHHHHHHHHHH-ccCCCCC----cccccc---------------------------ccccccchHHHHHcChhHHHHHHH
Confidence 65555444433 5565421 000000 000012346677777744433333
Q ss_pred HHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc-------------------
Q psy16653 176 SLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS------------------- 219 (301)
Q Consensus 176 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~------------------- 219 (301)
.++.... ......+.|.+.++.|.+.+..... +.||.+.
T Consensus 214 ~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~ 288 (382)
T PRK11128 214 VSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG 288 (382)
T ss_pred HHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 2322222 3345556666777766653221111 2222111
Q ss_pred -----------------------------ccccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q psy16653 220 -----------------------------MFDCIPFQVKGIATGIAVAV-NWIGAFLVTLCFGFLVRHFGSAATFWIFTV 269 (301)
Q Consensus 220 -----------------------------~~e~~p~~~R~~~~~~~~~~-~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 269 (301)
..+. |++.+++..+..+.. ..++..++|.+.|.+.|+.|. ..++..++
T Consensus 289 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~ 366 (382)
T PRK11128 289 STTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMAL 366 (382)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHH
Confidence 4454 555568888887644 456668999999999999887 45666666
Q ss_pred HHHHHH
Q psy16653 270 CCVVGT 275 (301)
Q Consensus 270 ~~~~~~ 275 (301)
+.+++.
T Consensus 367 ~~~~~~ 372 (382)
T PRK11128 367 VALPAL 372 (382)
T ss_pred HHHHHH
Confidence 555444
No 85
>PTZ00207 hypothetical protein; Provisional
Probab=99.26 E-value=2.1e-11 Score=111.22 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=100.3
Q ss_pred cccccccccCccccchhhhhcc------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKE------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI 76 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~ 76 (301)
||+++.++..++++|.++++++ ++++.+.+.|++.|+|.+...+.....+.+|+| ++||++.++...+..+|.
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGs 168 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGS 168 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHH
Confidence 5778889999999999999887 688999999999999999999999999999996 789999999999999999
Q ss_pred HH-HHHhccc---hhHHHHHHHHHHHHHHHHHHhccc--ccchhHHHhcCChHHHHHH
Q psy16653 77 LY-LYCLGLS---TYTVIAIGCLAVPILLLVLFFLVV--PETPIYLMKSGNNKKAEVS 128 (301)
Q Consensus 77 ~~-~~~i~~~---~Wr~~f~~~~~~~~~~~~~~~~~~--~Esp~~l~~~~~~~~a~~~ 128 (301)
.+ +++.... +|+..|++.+++++++.++..+++ |++|+|..++++.+++++.
T Consensus 169 aI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~ 226 (591)
T PTZ00207 169 AILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA 226 (591)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence 75 4444333 899999999999888777766555 4455655455544444444
No 86
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.22 E-value=7.5e-11 Score=105.11 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=53.9
Q ss_pred ccccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGI-AVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
..|.+|++.|++..+. .+....+++.+++.+.+++.+..|++.+|.+.+++.++..++.+...++
T Consensus 340 ~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 340 ITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5688899999988766 5677889999999999999999999999998888887777666665554
No 87
>KOG3764|consensus
Probab=99.22 E-value=1.6e-12 Score=109.80 Aligned_cols=106 Identities=11% Similarity=-0.091 Sum_probs=97.3
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC-ccchhcHHHHHHHHHHHHHHHh
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY-LSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~-Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+..+.+|+.+...++++.++..+++.++++|.+||+|.+...+...+++++.+|++. |++++|..-.+.++|.++++.+
T Consensus 136 ~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpf 215 (464)
T KOG3764|consen 136 KIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPF 215 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCc
Confidence 456778888999999999999999999999999999999999999999999998776 7999999999999999999999
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhccc
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVV 109 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~ 109 (301)
|+. |.+.+|++.+.+.++-..+.++.+
T Consensus 216 GGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 216 GGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred ccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 987 999999999999999888887333
No 88
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.20 E-value=2.4e-10 Score=103.29 Aligned_cols=101 Identities=10% Similarity=-0.166 Sum_probs=86.1
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+.+.++..+.+++.++.+.+++++.+.++|++.|+|.|...+....+++|++|+++ |++..+++..+.++|..+++
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~ 158 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP 158 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence 556777888888999998888888888899999999999999999999999998865 88899999999999999998
Q ss_pred Hhccc-----hhHHHHHHHHHHHHHHHHH
Q psy16653 81 CLGLS-----TYTVIAIGCLAVPILLLVL 104 (301)
Q Consensus 81 ~i~~~-----~Wr~~f~~~~~~~~~~~~~ 104 (301)
.++.. +||+.|.+.++..++..+.
T Consensus 159 ~l~g~l~~~~g~~~~f~~~~~~~~~~~l~ 187 (475)
T TIGR00924 159 LLAGVIAENYGYHVGFNLAAVGMVIGLLT 187 (475)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 88765 8999999988655544333
No 89
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.19 E-value=5.2e-11 Score=105.32 Aligned_cols=218 Identities=10% Similarity=0.031 Sum_probs=128.2
Q ss_pred EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHHHHH
Q psy16653 29 SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS----TYTVIAIGCLAVPILLLVL 104 (301)
Q Consensus 29 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~----~Wr~~f~~~~~~~~~~~~~ 104 (301)
.+++.|++.|++.+...+....++.|..+ ++++..+......++|..+++.++.. +||..|++.++.+++..++
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~ 178 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLL 178 (396)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHH
Confidence 34566888888888888888888877643 33445555555566666666666543 9999999999888887766
Q ss_pred HhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHh
Q psy16653 105 FFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQ 184 (301)
Q Consensus 105 ~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (301)
.++..||+|.. ++..+ ..+.+ +++++..+.++.+++|..+......+.....
T Consensus 179 ~~~~~~~~~~~-------~~~~~----~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~-- 230 (396)
T TIGR00882 179 LMFAKPKAPSS-------ATVAN----ALGAN---------------ASAFSLKLALELFRQRKFWMFVLYVVGVACV-- 230 (396)
T ss_pred HHHhCCCCchh-------hhhhc----ccccc---------------cCCCCHHHHHHHHcCCcHHHHHHHHHHHHHH--
Confidence 65345555421 00000 00000 0001112345666666433322222111111
Q ss_pred hhchHHHHHhHHHHHHhcCC--CCCcchhh-------------------Hhhhccc------------------------
Q psy16653 185 FSGVNAVIFYSNDIFKSAGS--TLDPGFSY-------------------IQDSLIS------------------------ 219 (301)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~g~--~~~~~~~~-------------------l~~~v~~------------------------ 219 (301)
++....+.+.++++... +.+..... +.||.++
T Consensus 231 ---~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~ 307 (396)
T TIGR00882 231 ---YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTA 307 (396)
T ss_pred ---HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCCh
Confidence 22333344444444311 11111100 3333222
Q ss_pred ------------------------ccccCCcchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHH
Q psy16653 220 ------------------------MFDCIPFQVKGIATGI-AVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVG 274 (301)
Q Consensus 220 ------------------------~~e~~p~~~R~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 274 (301)
..+..|++.++++.+. .+....+++.+++.+.+++.+..|++.+|.+.+++.++.
T Consensus 308 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~ 387 (396)
T TIGR00882 308 LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLF 387 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4667788888887776 567899999999999999999999988888888887776
Q ss_pred HHHhh
Q psy16653 275 TVFTF 279 (301)
Q Consensus 275 ~~~~~ 279 (301)
.....
T Consensus 388 ~~~~~ 392 (396)
T TIGR00882 388 TLISV 392 (396)
T ss_pred HHHHH
Confidence 65543
No 90
>KOG2615|consensus
Probab=99.16 E-value=5.6e-11 Score=100.06 Aligned_cols=77 Identities=9% Similarity=-0.007 Sum_probs=66.7
Q ss_pred ccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 8 QLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 8 ~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
.+|+...++..++-+++.+|..++.+|++.|+..| ...+..++++|+.++|+|++.++.+++.+.+|.++||.+|++
T Consensus 102 l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgy 178 (451)
T KOG2615|consen 102 LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY 178 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence 34444556778888999999777778999999995 777889999999999999999999999999999999999876
No 91
>KOG2504|consensus
Probab=99.15 E-value=2e-12 Score=116.65 Aligned_cols=268 Identities=14% Similarity=0.068 Sum_probs=174.6
Q ss_pred ccccccccCccccchhhhhccCCeeEEee-echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
|+...+|.++.++|.++..++++++.+++ .-++.|+|.|..+..+.+.+..++ +++|+.+.++...+..+|.++-+.+
T Consensus 111 R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l 189 (509)
T KOG2504|consen 111 RTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPL 189 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHH
Confidence 45567788888999999999999988666 678999999999999999999665 5678999999999999988887777
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHH-----------Hhc-CCCCChHH----
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLR-----------FYR-GSRYDVPL---- 141 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~-----------~~~-~~~~~~~~---- 141 (301)
... |||+.+++.+.+.+-..+....+-|.++..... .++..+... +.. ..+....+
T Consensus 190 ~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (509)
T KOG2504|consen 190 LKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLS 266 (509)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCccccc
Confidence 654 999999999999987777766344544432111 000000000 000 00000000
Q ss_pred HHHHHHHHHHHHh--hccchh----hhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh---
Q psy16653 142 ELAAIQREIDAAA--RKKASF----SDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY--- 212 (301)
Q Consensus 142 ~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~--- 212 (301)
+.+..++..++.+ ..+... .++++++ ..+.+.+.......+++....++|.+.++.|++.+.....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Si 341 (509)
T KOG2504|consen 267 NLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSI 341 (509)
T ss_pred chhhhhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH
Confidence 0000000000000 111111 3566664 2333333344444457788888888888877764333222
Q ss_pred --------------Hhhhcc--c------------------------------------------------ccccCCcch
Q psy16653 213 --------------IQDSLI--S------------------------------------------------MFDCIPFQV 228 (301)
Q Consensus 213 --------------l~~~v~--~------------------------------------------------~~e~~p~~~ 228 (301)
+.|+-. + +.|+.+.+.
T Consensus 342 igi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 342 IGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK 421 (509)
T ss_pred HHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh
Confidence 111100 0 889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhhe
Q psy16653 229 KGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 229 R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 280 (301)
-+.+.|+...+..++..++|.+.+.+.|..+ |...|...+++.+++..+.++
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999999999999999999999998887 667777777777777755544
No 92
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.13 E-value=8.7e-10 Score=97.29 Aligned_cols=203 Identities=14% Similarity=0.041 Sum_probs=121.5
Q ss_pred hhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccc
Q psy16653 36 QNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVP 110 (301)
Q Consensus 36 l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~ 110 (301)
+.++..+...+..-.+..|..++++++...+....+..+|.+++...... |||..|++.++..++..+..++..|
T Consensus 106 ~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~ 185 (390)
T TIGR02718 106 CASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD 185 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444555566678888888888888888888888888888754332 9999999999988877766652333
Q ss_pred cchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHH
Q psy16653 111 ETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNA 190 (301)
Q Consensus 111 Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 190 (301)
|+|.. +++.++ +..++++.+++|..+..... .++... +...
T Consensus 186 ~~~~~---~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~~~-~~l~~~----~~~~ 226 (390)
T TIGR02718 186 RAVAS---PEAPLA-------------------------------RRASLFRFFRRPLAWSLLAL-ALLSAM----TAVS 226 (390)
T ss_pred CCcCc---cccchh-------------------------------hHHHHHHHHcCcCHHHHHHH-HHHHHH----HHHH
Confidence 33210 000000 01123445555532222221 111111 1222
Q ss_pred HHHhHHHHHHhcCCCCCcchhh------------------Hhhhccc---------------------------------
Q psy16653 191 VIFYSNDIFKSAGSTLDPGFSY------------------IQDSLIS--------------------------------- 219 (301)
Q Consensus 191 ~~~~~~~~~~~~g~~~~~~~~~------------------l~~~v~~--------------------------------- 219 (301)
...+.+.++++.|++.+..... +.||.+.
T Consensus 227 ~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (390)
T TIGR02718 227 GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA 306 (390)
T ss_pred HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence 3334455555555442221110 1111110
Q ss_pred ---------------------ccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHH
Q psy16653 220 ---------------------MFDCIPF-QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 220 ---------------------~~e~~p~-~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (301)
..+..++ +.+++..++.+....++..++|.+.+.+.++.|++..|.+.+++.+++.++
T Consensus 307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3444554 889999999999999999999999999999999888887777766666544
No 93
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.11 E-value=1.3e-11 Score=112.19 Aligned_cols=120 Identities=10% Similarity=-0.081 Sum_probs=89.4
Q ss_pred cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHHhccc-----hhHHHHHHHHHH
Q psy16653 24 ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYCLGLS-----TYTVIAIGCLAV 97 (301)
Q Consensus 24 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~ 97 (301)
+++...++++|++.|++.+........++.|.+|++.||+..++ ++.+...|.+...+++.. +|+..+++..++
T Consensus 339 ~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~ 418 (490)
T PRK10642 339 SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVV 418 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 44455567788888887777777788899999999999998886 666655554444444332 588888888888
Q ss_pred HHHHHHHHhcccccchhHHHhc-----CChHHHHHHHHHhcCCCCChHHHHHHHH
Q psy16653 98 PILLLVLFFLVVPETPIYLMKS-----GNNKKAEVSLRFYRGSRYDVPLELAAIQ 147 (301)
Q Consensus 98 ~~~~~~~~~~~~~Esp~~l~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 147 (301)
+++.++..+ ++||||+|+.++ ||.|||.+.++|++. +.+.|.++++
T Consensus 419 ~~i~~~~~~-~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~---~~~~~~~~i~ 469 (490)
T PRK10642 419 AVIGLITGV-TMKETANRPLKGATPAASDIQEAKEILVEHYD---NIEQKIDDID 469 (490)
T ss_pred HHHHHHHHH-HhccccCCCCCCccccccchhhHHHHhhcccc---cccchhhhcc
Confidence 887777776 789999998865 999999999999984 3344444443
No 94
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.09 E-value=4.9e-10 Score=95.63 Aligned_cols=91 Identities=14% Similarity=-0.009 Sum_probs=74.5
Q ss_pred hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc----------------
Q psy16653 22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS---------------- 85 (301)
Q Consensus 22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~---------------- 85 (301)
+...+|..++++-++.|.|.+..-+.+..|+++..|++++.+.+++.+.+..+|.+++|.++..
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3456788899999999999999999999999999999999999999999999999999988652
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHh-cccccc
Q psy16653 86 -----TYTVIAIGCLAVPILLLVLFF-LVVPET 112 (301)
Q Consensus 86 -----~Wr~~f~~~~~~~~~~~~~~~-~~~~Es 112 (301)
+||+++++.+...+++.+++. ..+||.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~ 117 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL 117 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 599999977666555554443 234553
No 95
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.3e-10 Score=93.87 Aligned_cols=234 Identities=17% Similarity=0.100 Sum_probs=161.5
Q ss_pred ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
....++.+.++|.++-... +...++.+-.+.|.|.+...+..+..|-|.+|++- +..++++.+....|..++..+...
T Consensus 79 ~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavp 156 (395)
T COG2807 79 SLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVP 156 (395)
T ss_pred HHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhH
Confidence 3455666667777777666 66778889999999999999999999999998876 899999999988888888777644
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccch
Q psy16653 86 ------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKAS 159 (301)
Q Consensus 86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (301)
+||....+-++++++.++.++ |...|. + . .+.+.+..+
T Consensus 157 la~~~~gW~~aL~~WAl~allAl~~Wl---Pq~~r~-----~---~-------------------------~~~~~~~~~ 200 (395)
T COG2807 157 LAQHSGGWRGALGFWALLALLALLIWL---PQALRE-----Q---A-------------------------ASIATKLVS 200 (395)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHh---hhcccc-----c---c-------------------------ccccccccc
Confidence 799999999999999988866 322211 0 0 000111223
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-----------------Hhhhccc---
Q psy16653 160 FSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-----------------IQDSLIS--- 219 (301)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-----------------l~~~v~~--- 219 (301)
-..++++|.-|.-. +++..|-..+|.+..|+|.++.+.|++....-.. +.+|..+
T Consensus 201 ~~~vw~~~~aW~vt-----LfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~ 275 (395)
T COG2807 201 VRKVWRSPLAWQVT-----LFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP 275 (395)
T ss_pred ccccccCchhHHHH-----HHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 34567777333322 2233333348999999999999999885444321 1111000
Q ss_pred ----------------------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 ----------------------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253 (301)
Q Consensus 220 ----------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~ 253 (301)
....-.++.-+.=.|+.+.++++.+..+|.++|+
T Consensus 276 ~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 276 LVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 2222233445666889999999999999999999
Q ss_pred HHHhhC-cchhHHHHHHHHHHHHHHhheec
Q psy16653 254 LVRHFG-SAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 254 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
+.|..| |+.+...+..+.++..+..+..-
T Consensus 356 lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~ 385 (395)
T COG2807 356 LHDATGSWSAPLVLLALATLLMLIFGLRAG 385 (395)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence 999876 66666666666666666665543
No 96
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.07 E-value=3.9e-10 Score=102.16 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=81.3
Q ss_pred ccccccccCccccchhhhhccCCeeEE-eeechhhhccCcccccchhhhhhccCCCC--CccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSI-IVTPAQNMASDERDNITLNMLQKEGDAPT--YLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+...++..++++++++++++.+...+ .++|.++|+|.|...|....++.|.+|++ +|++..+++..+.++|..+++
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 567788899999999999998775554 47899999999999999999999999988 457788899999999999888
Q ss_pred Hhccc-----hhHHHHHHHHHHHH
Q psy16653 81 CLGLS-----TYTVIAIGCLAVPI 99 (301)
Q Consensus 81 ~i~~~-----~Wr~~f~~~~~~~~ 99 (301)
.++.+ |||+.|++.++..+
T Consensus 161 ~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 161 SLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHH
Confidence 87765 99999999755333
No 97
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.94 E-value=8.4e-10 Score=100.40 Aligned_cols=99 Identities=9% Similarity=-0.004 Sum_probs=79.0
Q ss_pred ccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+...++..+++++.++.+++. +...+.++|++.|++.|...+....++.|++|+++ |+...+++..+.++|..+++
T Consensus 88 r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 88 KRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 4566778888888888888764 34456678999999999999999999999998754 44577888899999999998
Q ss_pred Hhccc-----hhHHHHHHHHHHHHHHH
Q psy16653 81 CLGLS-----TYTVIAIGCLAVPILLL 102 (301)
Q Consensus 81 ~i~~~-----~Wr~~f~~~~~~~~~~~ 102 (301)
.++++ |||+.|++.++..++.+
T Consensus 168 ~i~g~l~~~~g~~~~F~i~~i~~~i~~ 194 (500)
T PRK09584 168 LATPWLAAKYGWSVAFALSVVGMLITV 194 (500)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 88765 89999999876544433
No 98
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.93 E-value=9e-09 Score=90.69 Aligned_cols=245 Identities=14% Similarity=0.051 Sum_probs=143.2
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH--
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC-- 81 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~-- 81 (301)
++++.++..+.++..+......+++.++..-++..+...+..|..-.+..+.... ++.-.+-.-...++|.+++..
T Consensus 68 ~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~ 145 (400)
T PF03825_consen 68 KRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAF 145 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHH
Confidence 4555566666666666677788888877777777777777778887777777762 333444444444455444421
Q ss_pred ---hccc----hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHh
Q psy16653 82 ---LGLS----TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAA 154 (301)
Q Consensus 82 ---i~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
+... +..+.+++.+..+++...... .+|+.|.. ++.++. .++
T Consensus 146 ~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l-~lp~~~~~----~~~~~~--------------------------~~~ 194 (400)
T PF03825_consen 146 GGLLGGYLGISGTSLIFYIAAILSLLLAGFAL-FLPKTPPK----RSAKES--------------------------VKK 194 (400)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHHHHHHHH-hCCCCccc----cccCCC--------------------------ccc
Confidence 1211 233456666666665555555 78887621 000000 000
Q ss_pred hccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcC-CCCCcchh--h-------------------
Q psy16653 155 RKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAG-STLDPGFS--Y------------------- 212 (301)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~--~------------------- 212 (301)
....+..+++++|.....++..+.+... ......|.+.++++.| .+.+.... .
T Consensus 195 ~~~~~~~~llk~~~~~~Fll~~~l~~~~-----~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r 269 (400)
T PF03825_consen 195 LLGLDALKLLKNPRFLVFLLAAFLIGIS-----HAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR 269 (400)
T ss_pred ccchHHHHHhcCccHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112335678887544333333322222 4556777788888876 44222111 1
Q ss_pred ----------------------Hh-hh---------cc---c--------------ccccCCcchhhhHHHHHHHH-HHH
Q psy16653 213 ----------------------IQ-DS---------LI---S--------------MFDCIPFQVKGIATGIAVAV-NWI 242 (301)
Q Consensus 213 ----------------------l~-~~---------v~---~--------------~~e~~p~~~R~~~~~~~~~~-~~~ 242 (301)
.. |. ++ . +.+..|++.|+++.++.+.. .-+
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Gl 349 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGL 349 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhH
Confidence 00 11 00 0 88999999999999998876 568
Q ss_pred HHHHHHHHHHHHHHhhCcchh------HHHHHHHHHHHHHHhheecccCC
Q psy16653 243 GAFLVTLCFGFLVRHFGSAAT------FWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 243 ~~~i~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
|..++..+.|++.|++|.+.. +.+.+++.++..++.+++.||++
T Consensus 350 g~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 350 GGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999886643 34444555555555555555543
No 99
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.91 E-value=7.1e-09 Score=94.21 Aligned_cols=226 Identities=13% Similarity=0.056 Sum_probs=141.7
Q ss_pred CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653 25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI 99 (301)
Q Consensus 25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~ 99 (301)
.+.+.+++.-++.|++.+...|.-.+++.|..|+++...+.++.+...++..++|+.+++. |=.+.|.+.++.-+
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl 180 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL 180 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999999999999999999999999999999998888888875 66778877766555
Q ss_pred HHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHH
Q psy16653 100 LLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGL 179 (301)
Q Consensus 100 ~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
+..+... .++..+. +.+ . ..+.-..++ +..++-+.++|..+. .+....+
T Consensus 181 ~~i~~l~-~~~~~~~----~~~-~--------------~~e~~~~~l----------~~G~ryv~~~~~l~~-~l~~~~~ 229 (524)
T PF05977_consen 181 ISILALL-RWKPPPP----PSS-L--------------PRERFFSAL----------REGLRYVRSSPPLRS-VLLRSFL 229 (524)
T ss_pred HHHHHHH-Hcccccc----ccc-c--------------chhhhhhhH----------HHHHHHHhcchHHHH-HHHHHHH
Confidence 4443333 3332110 000 0 000000011 112333444453322 2221211
Q ss_pred HHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh-------------------Hhhhccc---------------------
Q psy16653 180 MVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY-------------------IQDSLIS--------------------- 219 (301)
Q Consensus 180 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-------------------l~~~v~~--------------------- 219 (301)
..+ . ...+...+|.+.++. ++.+....+ +.++++.
T Consensus 230 ~~l---~-~~a~~aLlPl~a~~~-l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 230 FNL---F-ASAVWALLPLFARDV-LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHH---h-hhHHHHhhhHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 111 1 123334467766653 222222211 0011000
Q ss_pred ---------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q psy16653 220 ---------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV 272 (301)
Q Consensus 220 ---------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 272 (301)
..+..|++.||+..++...+...+..+|..+.|.+.+.+|.+..+.+.++..+
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ll 384 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALL 384 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999998877776666555
Q ss_pred HHHHHhh-eecccCC
Q psy16653 273 VGTVFTF-MVVPETK 286 (301)
Q Consensus 273 ~~~~~~~-~~~~et~ 286 (301)
++.++.+ ..+++.+
T Consensus 385 l~~~~~~~~~l~~~~ 399 (524)
T PF05977_consen 385 LSALIALRFPLRQGE 399 (524)
T ss_pred HHHHHHHHhcCcccc
Confidence 5555443 3344433
No 100
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.90 E-value=1.7e-08 Score=90.84 Aligned_cols=251 Identities=16% Similarity=0.176 Sum_probs=151.4
Q ss_pred ccccccCccccchhhhhc-cCCeeEEee-echhhhccCcccccchhhhhhccCCCCCc----------------------
Q psy16653 6 LNQLALPDGGVGYEINFK-ETRTVSIIV-TPAQNMASDERDNITLNMLQKEGDAPTYL---------------------- 61 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~-~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~R---------------------- 61 (301)
++.+...++.+++....+ .++.+.+.. .-++.-++.+...+...+|+.|.++++++
T Consensus 103 ~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (477)
T PF11700_consen 103 FLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVD 182 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHH
Confidence 334444444445555444 344343222 22333355666777778899999999999
Q ss_pred ----cchhcHHHHHHHHHHHHHHHhccc-------------hhHHHHHHHHHHHHHHHHHHhcccccchhH-HHhcCChH
Q psy16653 62 ----SALGSFFQMFLTLGILYLYCLGLS-------------TYTVIAIGCLAVPILLLVLFFLVVPETPIY-LMKSGNNK 123 (301)
Q Consensus 62 ----g~~~~~~~~~~~~G~~~~~~i~~~-------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~-l~~~~~~~ 123 (301)
++..+.-.....+|.++..++... +-|..+.+.++.-++..+-.++++||.|+- -..+++ .
T Consensus 183 ~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~-~ 261 (477)
T PF11700_consen 183 SLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS-S 261 (477)
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch-h
Confidence 999998888888888877666432 248888888888887777766688988742 000000 0
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-c
Q psy16653 124 KAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-A 202 (301)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~ 202 (301)
- ...-..+ -..+++++.+.|+ ...+++ .+++.+ .|++.+......+.++ .
T Consensus 262 ~--------------~~~g~~~----------l~~t~k~~~~~~~-~~~fLi---a~~l~~-dg~~ti~~~~~i~a~~~l 312 (477)
T PF11700_consen 262 Y--------------LRFGFKR----------LWRTFKEIRKLRQ-LFLFLI---AYFLYS-DGVNTIISFAGIYATEVL 312 (477)
T ss_pred H--------------HHHHHHH----------HHHHHHHHHhChH-HHHHHH---HHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 0 0000001 1112333333331 112222 222211 2455666666665553 3
Q ss_pred CCCCCcchhh-----------------Hhhhccc----------------------------------------------
Q psy16653 203 GSTLDPGFSY-----------------IQDSLIS---------------------------------------------- 219 (301)
Q Consensus 203 g~~~~~~~~~-----------------l~~~v~~---------------------------------------------- 219 (301)
|++..+.... +.||++.
T Consensus 313 g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~ 392 (477)
T PF11700_consen 313 GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGL 392 (477)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHH
Confidence 5553332211 2222211
Q ss_pred ------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 ------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
.+|+.|++..+...|+....++..++++|.+++.+.+..| .+..+....++.+++.++.+. .++.|
T Consensus 393 ~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~-v~~~~ 471 (477)
T PF11700_consen 393 FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF-VDVEK 471 (477)
T ss_pred HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh-ccchh
Confidence 9999999999999999999999999999999999999887 667777777777777777755 44444
Q ss_pred C
Q psy16653 287 G 287 (301)
Q Consensus 287 ~ 287 (301)
+
T Consensus 472 g 472 (477)
T PF11700_consen 472 G 472 (477)
T ss_pred h
Confidence 3
No 101
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.87 E-value=1.5e-08 Score=92.29 Aligned_cols=101 Identities=11% Similarity=-0.020 Sum_probs=76.4
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHH----HHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTL----GILYLY 80 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~----G~~~~~ 80 (301)
.+..++..+..+|+++++.+++..+++.+-.+.|+|.|.... ....++|..|.++|+....+....... |..++.
T Consensus 109 ~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 109 YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 345566777889999999999999999999999999877764 456699999999998877665544433 333333
Q ss_pred Hhccc-hhHHHHHHHHHHHHHHHHHHh
Q psy16653 81 CLGLS-TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 81 ~i~~~-~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
.+... +|||.|++..+...+.+++..
T Consensus 188 ~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 188 LFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 33333 999999999988777655544
No 102
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.83 E-value=2.1e-08 Score=89.76 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=60.4
Q ss_pred cCcccccchhhhhhccCCCCCc--cchhcHHHHHHHHHHHHHHHhccc--------------------hhHHHHHHHHHH
Q psy16653 40 SDERDNITLNMLQKEGDAPTYL--SALGSFFQMFLTLGILYLYCLGLS--------------------TYTVIAIGCLAV 97 (301)
Q Consensus 40 ~~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~~~~i~~~--------------------~Wr~~f~~~~~~ 97 (301)
+.....+...++++|..|+++| +.+.++.+.+.++|.++++.+++. +-|..|++.++.
T Consensus 127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~ 206 (477)
T TIGR01301 127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL 206 (477)
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence 5556667788999999999876 578888989999999998887643 347789998888
Q ss_pred HHHHHHHHhcccccch
Q psy16653 98 PILLLVLFFLVVPETP 113 (301)
Q Consensus 98 ~~~~~~~~~~~~~Esp 113 (301)
.++..++..+.++|.|
T Consensus 207 l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 207 LAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHeeeeeccC
Confidence 8888888877899976
No 103
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.77 E-value=1.1e-09 Score=81.56 Aligned_cols=109 Identities=12% Similarity=0.002 Sum_probs=92.0
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+....+..+..++.++....++++.+.+.+++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 107 (141)
T TIGR00880 28 KPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLG 107 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhH
Confidence 44555566666777777778888888999999999999999999999999999999999999999999999999888877
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
.. +||+.+++.++..++..+..++..||+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 108 GVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 65 899999999888888777766456664
No 104
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.1e-08 Score=87.25 Aligned_cols=228 Identities=18% Similarity=0.156 Sum_probs=150.5
Q ss_pred ccccCccccchhhhh---ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 8 QLALPDGGVGYEINF---KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 8 ~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
..|+.++++|.++.. ...++..++.+-++.|.|.|.--+.+..|++...|++.-.+.+++.|....+|.++++.++.
T Consensus 82 ~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 82 VLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467778888888884 66778889999999999999999999999999999999899999999999999999988863
Q ss_pred c------------------------hhHHHHHHHHHHHHHHHHHHhc-ccccchhHHHhcCChHHHHHHHHHhcCCCCCh
Q psy16653 85 S------------------------TYTVIAIGCLAVPILLLVLFFL-VVPETPIYLMKSGNNKKAEVSLRFYRGSRYDV 139 (301)
Q Consensus 85 ~------------------------~Wr~~f~~~~~~~~~~~~~~~~-~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~ 139 (301)
. .||+++...+...+++.+.... ..||-+. +.
T Consensus 162 ~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------------~~ 218 (422)
T COG0738 162 SLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------------AA 218 (422)
T ss_pred HHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------------cc
Confidence 2 4788888877777766665541 2233210 00
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh------
Q psy16653 140 PLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY------ 212 (301)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~------ 212 (301)
++ +.+++.....+++++| ..+...+..+++...+ ..+..|++.++.+ .|.+.+.....
T Consensus 219 ~~----------~~~~~~~~~~~l~~~~-~~~~gvl~~FlYVG~E----va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~ 283 (422)
T COG0738 219 PS----------LGASGSAGLSSLFQNK-HLRLGVLAIFLYVGAE----VAIGSFLVSYLEELLGLNEQQAAYYLSFFWV 283 (422)
T ss_pred cc----------ccccccchHHHHHhCh-HHHHHHHHHHHHHhHH----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 00 0011111567788888 3444444444444433 3466778888877 45553332221
Q ss_pred -----------Hhhhccc-----------------------------------------------ccccCCcchhhhHHH
Q psy16653 213 -----------IQDSLIS-----------------------------------------------MFDCIPFQVKGIATG 234 (301)
Q Consensus 213 -----------l~~~v~~-----------------------------------------------~~e~~p~~~R~~~~~ 234 (301)
+..++.. ..+..|.+ ....|
T Consensus 284 ~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~--ts~~s 361 (422)
T COG0738 284 GFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEH--TSVGS 361 (422)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc--ccccc
Confidence 1111111 44555533 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Q psy16653 235 IAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGT 275 (301)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 275 (301)
.......+|+.+.|.+.|++.|+.|....+......|.+-.
T Consensus 362 ~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 362 GLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44455667899999999999999998777665666665555
No 105
>PRK09669 putative symporter YagG; Provisional
Probab=98.73 E-value=2.8e-08 Score=89.35 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=67.5
Q ss_pred cccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHH
Q psy16653 7 NQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
+..+....+++.++....++. ..+.+.-++.+.+.+.......++.+|+. ++++|++..++-.....+|..++
T Consensus 83 il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~ 162 (444)
T PRK09669 83 LLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIV 162 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555432 23333444445444456666678999988 56889988888777777776665
Q ss_pred HHhc--------c---c-hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 80 YCLG--------L---S-TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 80 ~~i~--------~---~-~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
..+. . . +|+..+.+.++++++..+..++..+|.
T Consensus 163 ~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 163 SVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 4321 1 1 799999999888887776666466664
No 106
>KOG3626|consensus
Probab=98.69 E-value=1.4e-07 Score=86.97 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=123.9
Q ss_pred EEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------------------
Q psy16653 29 SIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS----------------------- 85 (301)
Q Consensus 29 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~----------------------- 85 (301)
.++++-++.|+|....++.+..|+-|...+++-....++......+|.++|++++++
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 456688999999999999999999999999999999999999999999999999742
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCC--ChHHHHHHHHHHHHHHhhccchhhh
Q psy16653 86 -TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRY--DVPLELAAIQREIDAAARKKASFSD 162 (301)
Q Consensus 86 -~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (301)
-|+.-|++.+.+.++..+-.+ ++|....- ..+..++ +..+..+.++. +.+.+..+ +-+.-...+++
T Consensus 319 GAWWlGFLi~g~~~~~~a~p~f-~fPk~lp~---~~~~~~~-~~~~~~k~~~~~~~~~~~~~~------~ikdfp~s~~~ 387 (735)
T KOG3626|consen 319 GAWWLGFLICGALLLFSAVPLF-FFPKELPK---SQKRKRA-RDLHVLKTESGGAKSDKTFGK------KIKDFPKSIKR 387 (735)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hCcccCcc---ccccchh-hhhcccccccccccCCcchhh------hHHHHHHHHHH
Confidence 499999999999999888887 77654311 1110011 11111111110 01101000 01112345677
Q ss_pred hhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHH
Q psy16653 163 LVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNW 241 (301)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~ 241 (301)
++++|. .+...+....+...+..+..|+|.+++.. |.+ . +.|.=+.-.++-
T Consensus 388 ll~N~i-----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~s--a---------------------s~An~l~G~i~v 439 (735)
T KOG3626|consen 388 LLSNPI-----FMLVVLASVIESLAITGYITFLPKYLETQFGIS--A---------------------SLANILTGSIGV 439 (735)
T ss_pred HhcCch-----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCC--H---------------------HHHHHHhhhhhh
Confidence 888873 33333333444455788999999999986 444 1 223333334444
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy16653 242 IGAFLVTLCFGFLVRHFG 259 (301)
Q Consensus 242 ~~~~i~~~~~~~l~~~~~ 259 (301)
-+..+|.++.|++.+.+.
T Consensus 440 p~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 440 PAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred hhhhhhhhccceeeeeec
Confidence 556677777777777654
No 107
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.59 E-value=9.1e-09 Score=93.84 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=3.0
Q ss_pred eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------------
Q psy16653 27 TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--------------------- 85 (301)
Q Consensus 27 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--------------------- 85 (301)
+..++++.++.|+|....++++..|+-|..++++-+.+.++......+|+.+|+++++.
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~ 220 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS 220 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence 56788899999999999999999999999999999999999999999999999999742
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 86 ------TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 86 ------~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
.|..-|++.+...++..+-.. .+|..
T Consensus 221 dp~WvGAWWLGfli~g~~~~l~aipl~-~FPk~ 252 (539)
T PF03137_consen 221 DPRWVGAWWLGFLICGILLFLSAIPLF-FFPKK 252 (539)
T ss_dssp ---------------------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH-cCCcc
Confidence 388888888888887776666 55543
No 108
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.54 E-value=3.5e-07 Score=82.67 Aligned_cols=80 Identities=16% Similarity=-0.002 Sum_probs=59.2
Q ss_pred eechhhhccCcccccchhhhhhccCCCCCccchhcHHHH---HHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHH
Q psy16653 32 VTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM---FLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLV 103 (301)
Q Consensus 32 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~---~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~ 103 (301)
+..++.+++.+..-+..-++..|..+ +++....+.... ...+|.+++..+++. +||..|++.+.+.++..+
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 37889999998999999999999999 555444333322 234677777666554 899999999988888865
Q ss_pred HHhcccccch
Q psy16653 104 LFFLVVPETP 113 (301)
Q Consensus 104 ~~~~~~~Esp 113 (301)
... +++|++
T Consensus 204 ~~~-~~~E~~ 212 (468)
T TIGR00788 204 VSN-LSKERR 212 (468)
T ss_pred HHH-hccccc
Confidence 555 788864
No 109
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.53 E-value=1.6e-06 Score=75.83 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=56.3
Q ss_pred ccccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIA-VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
.++.+|++..+|...+. +....++..+.+.+.|.+.|++|++.+|++.+.+.++..++..+.+++.++
T Consensus 337 I~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 337 ITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred HHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 89999999999999986 467788899999999999999999999999998888877777777765544
No 110
>KOG4686|consensus
Probab=98.48 E-value=3.5e-07 Score=74.72 Aligned_cols=236 Identities=14% Similarity=0.066 Sum_probs=132.3
Q ss_pred cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc--hhHHHHHHH---HHHH
Q psy16653 24 ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--TYTVIAIGC---LAVP 98 (301)
Q Consensus 24 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--~Wr~~f~~~---~~~~ 98 (301)
...||.++.+||+.|+|.-..-+....|+.-|+..|+-+.+.++.....-+|..+-..+-.+ +--.-++-. ..++
T Consensus 133 ~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG 212 (459)
T KOG4686|consen 133 SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLG 212 (459)
T ss_pred HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHH
Confidence 46789999999999999877788888999999999999999999988888887665544332 111111100 1111
Q ss_pred HHHHHHHhcccccchhHHHhcCC-hHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhc-cchhHHHHHHH
Q psy16653 99 ILLLVLFFLVVPETPIYLMKSGN-NKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVS-SRANLRALIIS 176 (301)
Q Consensus 99 ~~~~~~~~~~~~Esp~~l~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 176 (301)
+...+-.. ....|-......|- ++.|++.+.+-.+.-.+ .....+... .|.+| ...+.
T Consensus 213 ~~l~~~~~-tc~~slical~lg~~D~rAerilh~e~g~~Ge------------------~pkLtdv~~f~ppfw-~~~ii 272 (459)
T KOG4686|consen 213 LWLCFEVK-TCKQSLICALSLGLSDDRAERILHLEEGFLGE------------------EPKLTDVNTFYPPFW-VLVII 272 (459)
T ss_pred HHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHHhhhcCcccC------------------CcccccccccCccHH-HHHHH
Confidence 11111111 11111111222222 23333333222211111 111112211 12133 22222
Q ss_pred HHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhhhccc-------------------
Q psy16653 177 LGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQDSLIS------------------- 219 (301)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~~v~~------------------- 219 (301)
+.+.... ...+....|.++++ .|++...+... +.|+.+.
T Consensus 273 cv~yyva----~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l 348 (459)
T KOG4686|consen 273 CVLYYVA----WFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGL 348 (459)
T ss_pred HHHHHHH----HHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhH
Confidence 3332221 33444556666665 46653322111 4454333
Q ss_pred ----------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cc---hhHHHH
Q psy16653 220 ----------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SA---ATFWIF 267 (301)
Q Consensus 220 ----------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~---~~~~~~ 267 (301)
++-++|.+.-||+.|+++.+.+++-.+.|.+.+.+.++-| +. ..|+..
T Consensus 349 ~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~ 428 (459)
T KOG4686|consen 349 FFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLII 428 (459)
T ss_pred HhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHH
Confidence 7889999999999999999999999999999999988765 22 234455
Q ss_pred HHHHHHHHHHhheecc
Q psy16653 268 TVCCVVGTVFTFMVVP 283 (301)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (301)
+..++....+.+.+.+
T Consensus 429 ~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 429 GLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHHhheec
Confidence 6666666666655443
No 111
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.42 E-value=2.7e-08 Score=93.77 Aligned_cols=109 Identities=10% Similarity=-0.101 Sum_probs=92.9
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
|+++.+++.+.+++.++.+++++...+++.+++.|+..++..++..++++|++|.++|++.+++.+....+|.++++.++
T Consensus 625 r~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~ 704 (742)
T TIGR01299 625 LRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIF 704 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777788888888888888788888889999888889999999999999999999999999999999999999887
Q ss_pred cc----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. +...+|++.++..++..++.+ ++||+.
T Consensus 705 g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~ 737 (742)
T TIGR01299 705 GSFVGITKAAPILFASAALACGGLLAL-KLPDTR 737 (742)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence 64 556788888888887777777 779974
No 112
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.36 E-value=8.2e-07 Score=80.50 Aligned_cols=107 Identities=14% Similarity=0.013 Sum_probs=66.6
Q ss_pred cccccCccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHH
Q psy16653 7 NQLALPDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
+.++....+++.++....++. ..+++.-++.+++.....+...+++.|.+ ++++|.+..++-..+.++|..+.
T Consensus 80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~ 159 (473)
T PRK10429 80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT 159 (473)
T ss_pred HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444443322 22334444555666666677778999999 69999998888666555553333
Q ss_pred HHh--------ccc----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 80 YCL--------GLS----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 80 ~~i--------~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
..+ +.. +|+....+.++..++..+..++..+|.+
T Consensus 160 ~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~ 205 (473)
T PRK10429 160 AGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY 205 (473)
T ss_pred HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC
Confidence 221 211 6888888888887776666664677753
No 113
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.35 E-value=3.8e-06 Score=75.18 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=77.2
Q ss_pred cccccCccccchhhhhcc-C-------CeeEEeeechhhhccCcccccchhhhhhccCC-CCCccchhcHHHHHHHHHHH
Q psy16653 7 NQLALPDGGVGYEINFKE-T-------RTVSIIVTPAQNMASDERDNITLNMLQKEGDA-PTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~-~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~ 77 (301)
+.+|....+++.++.... + ....+.+.-++..++.........++..|.++ +++|.+..+.-+.+..+|.+
T Consensus 75 ~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~ 154 (428)
T PF13347_consen 75 ILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSL 154 (428)
T ss_pred eehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHH
Confidence 345556666666666655 4 11224555566677777788888899999998 67999999998888888886
Q ss_pred HHHHhccc------------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 78 YLYCLGLS------------TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 78 ~~~~i~~~------------~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
+...+... +|++...+.+++.++..++..+.++|
T Consensus 155 l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 155 LASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 54444321 59999999999999988888877888
No 114
>PRK11462 putative transporter; Provisional
Probab=98.24 E-value=5.6e-06 Score=74.77 Aligned_cols=102 Identities=16% Similarity=0.060 Sum_probs=67.2
Q ss_pred CccccchhhhhccCC------eeEEeeechhhhccCcccccchhhhhhccCC-CCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 12 PDGGVGYEINFKETR------TVSIIVTPAQNMASDERDNITLNMLQKEGDA-PTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 12 ~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
...+++.++....++ +..+.+.-++..++.......-.++..|.++ +++|.+..++-..+..+|..+++.+..
T Consensus 88 i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 88 LPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544443 1223333344455556666677788999987 999999999999888888766644421
Q ss_pred -----c-------hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 85 -----S-------TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 85 -----~-------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
. +|+....+.+++++++.++.++..+|.+
T Consensus 168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~ 208 (460)
T PRK11462 168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERV 208 (460)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceecc
Confidence 1 6898888888888777766654566643
No 115
>KOG2325|consensus
Probab=98.21 E-value=5.9e-07 Score=79.64 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=79.3
Q ss_pred cccccCccccchhhh-h---ccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653 7 NQLALPDGGVGYEIN-F---KET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC 81 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~-~---~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~ 81 (301)
+.+|..+..+|+++- + ... .-+.++++|++.|+|.| ...+.-.|+++-+..+.|-|+.+....+..+|.++|+.
T Consensus 105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 345555666676665 2 222 56679999999999985 67778899999999999999999988877777777777
Q ss_pred hccc-------h-----------hHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653 82 LGLS-------T-----------YTVIAIGCLAVPILLLVLFFLVVPETPIY 115 (301)
Q Consensus 82 i~~~-------~-----------Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~ 115 (301)
++.. | +..+-++..+..++..+...+++.|.++-
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 6522 1 33456677777777776666688887753
No 116
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.18 E-value=1.2e-05 Score=70.55 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=59.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK 288 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 288 (301)
..|.+|++.|+++.++.+....++..+++.+.+.+.++.+|+..+.+.+++.++..+..++..||++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (385)
T TIGR00710 118 VRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY 186 (385)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 789999999999999999999999999999999999989999988888888777777766667776543
No 117
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.16 E-value=1.6e-05 Score=69.00 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=62.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
++++.|+++|+++.++.+....+...++..+..++.+.+|||.+|...+.+.+++.+..+..+|
T Consensus 126 a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 126 AARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999998899
No 118
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.15 E-value=9.6e-06 Score=71.60 Aligned_cols=68 Identities=10% Similarity=0.191 Sum_probs=58.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+++.++.+....++..++|.+.+.+.+..+|+..+.+.++++++..++.+...||+++
T Consensus 116 i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 116 LRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 78999999999999999999999999999998888888899988888888887777776666777643
No 119
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.14 E-value=1.6e-05 Score=70.76 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=58.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+++.++.+....++..+++.+.+++.+ ..||+..|.+.++..++..++.+++.||+++
T Consensus 121 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 121 LTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 7899999999999999999999999999999888764 3589999999888877777677777788764
No 120
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.12 E-value=2.5e-07 Score=82.47 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=85.3
Q ss_pred ccccccccCccccchhhhhcc-C---CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKE-T---RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILY 78 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~-~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~ 78 (301)
|+++.++..+.+++..+.... . +++.+++.+++.|++.+...+....++.|++|+++||+..++.+ ....+|.++
T Consensus 281 r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 281 KKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 345556666666654444442 2 23456678999999998888999999999999999999999997 567888888
Q ss_pred HHHhccc-----------hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 79 LYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 79 ~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
++.+++. |||..|.+.++..++..++..++++|+-
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 8877653 4999999999999888888887888873
No 121
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.10 E-value=1.9e-05 Score=70.85 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=55.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+++.++.+....+++.+++.+.+.+.+..||+..|.+.++++++..++..+..||+
T Consensus 136 ~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 136 LTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 789999999999999999999999999999999999999999999888877665555444445543
No 122
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.09 E-value=5.3e-07 Score=79.80 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=85.0
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
++++..+..+.+++.++....++.+.+++..++.|++.+..++.....+.|..|+++||+..++++....+|..+++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~ 358 (399)
T PRK05122 279 LRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLA 358 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667667677777777788899999999988888888889999999999999999998888887766554
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
+. ||+..|++.++..++.++..+ .+++
T Consensus 359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 390 (399)
T PRK05122 359 GLVASWFGYPSIFLAAALAALLGLALTW-LLYR 390 (399)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 43 899999999888888777766 4444
No 123
>PRK09848 glucuronide transporter; Provisional
Probab=98.08 E-value=5.7e-05 Score=68.01 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653 227 QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGS 260 (301)
Q Consensus 227 ~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 260 (301)
+.+|...|+.+....++..+++.+.+.+.+..|+
T Consensus 358 r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 358 RIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4569999999999999999999999988877664
No 124
>TIGR00895 2A0115 benzoate transport.
Probab=98.07 E-value=1.4e-05 Score=70.18 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=57.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..|.+|++.|+++.++......++..+++.+.+.+.+..+|+..+.+.+++..+..++.+...||+.
T Consensus 130 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 130 VSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred HHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 7899999999999999999999999999999999999999998888887666666666666677653
No 125
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.06 E-value=5.1e-06 Score=74.30 Aligned_cols=86 Identities=17% Similarity=0.131 Sum_probs=65.7
Q ss_pred CeeEEeeechhhhccCcccccchhhhhhccC--CCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHH
Q psy16653 26 RTVSIIVTPAQNMASDERDNITLNMLQKEGD--APTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVP 98 (301)
Q Consensus 26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~--~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~ 98 (301)
+.....+.-++..+|....-.++-+++.|.. .|+.||...+.......+|.+++..+++. ++|..|.+.+.+.
T Consensus 85 s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~ 164 (433)
T PF03092_consen 85 SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALP 164 (433)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHH
Confidence 3444445556777777778888888999988 34447888888888889999998888765 8899999998888
Q ss_pred HHHHHHHhccccc
Q psy16653 99 ILLLVLFFLVVPE 111 (301)
Q Consensus 99 ~~~~~~~~~~~~E 111 (301)
.+..+...+..+|
T Consensus 165 ~l~~~~~~~~~~e 177 (433)
T PF03092_consen 165 LLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHhhhh
Confidence 8777766645555
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.03 E-value=7.5e-07 Score=79.45 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=87.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC 81 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~ 81 (301)
+++++.++..+.+++.++..++++.+.++..+++.|++.+...+....++.|..|++.|+...+. ++....+|.++++.
T Consensus 291 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~ 370 (420)
T PRK09528 291 AKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLST 370 (420)
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHH
Confidence 45566666777777777788888888888899999998887778888899999999999987665 67777788888777
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.+. |||..|.+.++..++..++.++.++|.|
T Consensus 371 ~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 371 LAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7655 8999999988888776666553555443
No 127
>PRK03545 putative arabinose transporter; Provisional
Probab=98.03 E-value=4.6e-05 Score=67.27 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=57.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+.+.|+......++..++|.+.+.+.++.||+..|.+.++++++..+..+...||.
T Consensus 122 i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 122 AIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 788999999999999999999999999999999999999999999998888877766666556654
No 128
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.02 E-value=1.3e-05 Score=72.68 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=58.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+.+.++......++..++|.+.+++.++.+|+..|++.+.+.++..++..+..||+++
T Consensus 115 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 115 LLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence 78999999999999999999999999999999999999999999988887777777666666666543
No 129
>KOG2563|consensus
Probab=98.01 E-value=1.9e-05 Score=68.84 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=128.6
Q ss_pred eechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------hhHH--HHHHHHHHH
Q psy16653 32 VTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----------TYTV--IAIGCLAVP 98 (301)
Q Consensus 32 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----------~Wr~--~f~~~~~~~ 98 (301)
.+-.+.+.+.-.....-+-..+-|+|++||..+..+-.++..+|..++.++... .|.. .|+..+.++
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~ 224 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLA 224 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHH
Confidence 444455544433333444566779999999999998888888888888777543 6776 466555555
Q ss_pred HHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHH
Q psy16653 99 ILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLG 178 (301)
Q Consensus 99 ~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (301)
.+.+++..+..+|.|+.- ...+++.. ++..-..+++++++++. +++..
T Consensus 225 ~l~l~l~~~~~~~~P~tP-----ps~s~~~~----------------------~~~~f~~si~~~~~n~~----F~il~- 272 (480)
T KOG2563|consen 225 ALLLALVLFVFTKKPPTP-----PSASQAAL----------------------QDASFPKSIKSCFKNRQ----FIILA- 272 (480)
T ss_pred HHHHHHHHHhcCCCCCCC-----CchhHhhh----------------------hcCcHHHHHHHHHcCcc----HHHHH-
Confidence 555555554555544210 00000000 00111235677787763 22222
Q ss_pred HHHHHhhhchHHHHHhHHHHHHhcCCCC--Ccchhh---------------Hhhhccc----------------------
Q psy16653 179 LMVFQQFSGVNAVIFYSNDIFKSAGSTL--DPGFSY---------------IQDSLIS---------------------- 219 (301)
Q Consensus 179 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~--~~~~~~---------------l~~~v~~---------------------- 219 (301)
+.+...+..++...+.+...+...|++. ...... +.||...
T Consensus 273 ~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~ 352 (480)
T KOG2563|consen 273 ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTC 352 (480)
T ss_pred HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222233334555555554444445552 111110 2233111
Q ss_pred -------------------------------ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC----cchhH
Q psy16653 220 -------------------------------MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG----SAATF 264 (301)
Q Consensus 220 -------------------------------~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~----~~~~~ 264 (301)
..|..-+..-++..|+.+..+.+.+++-.++.+...+..+ +...-
T Consensus 353 t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (480)
T KOG2563|consen 353 TLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPAN 432 (480)
T ss_pred hccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccch
Confidence 4444433444889999999999999999999988888776 43344
Q ss_pred HHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653 265 WIFTVCCVVGTVFTFMVVPETKGKTLAQ 292 (301)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~et~~~~~~~ 292 (301)
+.....+.++.++..++.|+-++.+.|+
T Consensus 433 i~~~~~~~l~~~lva~~r~~y~R~~~e~ 460 (480)
T KOG2563|consen 433 IFLTVSALLGAILVAFFRPDYRRLRAEA 460 (480)
T ss_pred hHhHHHHHHHHHHHhhhhhhHHhHhhhh
Confidence 5556666677777777666655555543
No 130
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.01 E-value=7.6e-05 Score=66.28 Aligned_cols=102 Identities=23% Similarity=0.157 Sum_probs=74.7
Q ss_pred CccccchhhhhccCCe------eEEeeechhhhccCcccccchhhhhhccC-CCCCccchhcHHHHHHHHHHHHHHHhc-
Q psy16653 12 PDGGVGYEINFKETRT------VSIIVTPAQNMASDERDNITLNMLQKEGD-APTYLSALGSFFQMFLTLGILYLYCLG- 83 (301)
Q Consensus 12 ~~~~i~~~~~~~~~~~------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~~~~i~- 83 (301)
.-+++...++..++++ ....+.-++.+++.......-.++..|+. .++||.+..++-+.+.++|.++...+-
T Consensus 91 ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~ 170 (467)
T COG2211 91 IPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFP 170 (467)
T ss_pred HHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666642 23444556677777777777788888987 489999999999999999977665442
Q ss_pred ----c------c-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 ----L------S-TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ----~------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
. . ||+..-.+.++.+++..+.+++-++|.+
T Consensus 171 plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~ 211 (467)
T COG2211 171 PLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERV 211 (467)
T ss_pred HHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1 1 8999999999999998888886677754
No 131
>PRK12382 putative transporter; Provisional
Probab=98.00 E-value=1.3e-06 Score=77.22 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=85.8
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
++...++..+.+++.++....++.+.+++..++.|++.+...+.....+.|..|+++||+..++++....+|..+++.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~ 358 (392)
T PRK12382 279 VKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLA 358 (392)
T ss_pred CeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777778777788899999999888888888999999999999999999999999988888776
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+. ||+..|.+.++..++..++.+
T Consensus 359 g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 359 GMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 55 899999999988887776655
No 132
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.96 E-value=8.3e-05 Score=65.81 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=57.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
++|.+|++.|+.+.++......++..++|.+.+.+.+..||+..|.+.+.+++++.+......||++
T Consensus 133 i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 133 TMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 7899999999999999999999999999999999999999999998887777666555554467654
No 133
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.95 E-value=3.3e-05 Score=68.47 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=55.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
+.|.+|++.|+++.++.+....++..+++.+.+.+.+..+|+..+.+.+++.++..++.....||++
T Consensus 128 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 128 TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 7899999999999999999999999999988888888888988888877766666655555567653
No 134
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.95 E-value=3.8e-05 Score=67.21 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=59.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+|+..+.+.+++.++..+..++..||+++
T Consensus 107 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 107 VASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 78999999999999999999999999999999999999999999988888877777776666666543
No 135
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.93 E-value=9.5e-05 Score=67.18 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=50.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR---------HFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
++|.+|++.|+.+.|+.+..+++++.+++.+.+.+.. ..||+.+|.+.+++.++..+..+++.++
T Consensus 148 i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 148 MSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6788999999999999998888888888777665532 1479999999888887777666654443
No 136
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.93 E-value=9.3e-05 Score=64.16 Aligned_cols=244 Identities=12% Similarity=0.099 Sum_probs=136.4
Q ss_pred ccchhhhhccCC--eeE-EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc------c-
Q psy16653 15 GVGYEINFKETR--TVS-IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG------L- 84 (301)
Q Consensus 15 ~i~~~~~~~~~~--~~~-l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~------~- 84 (301)
.++.+...++++ ++. .+..-.+..++.....+...+++.+..++++-|+..++--....+|.++..++. .
T Consensus 100 i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~ 179 (438)
T COG2270 100 IISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQ 179 (438)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhccc
Confidence 344444444444 333 444555778888888888999999999999999988876655555555554442 1
Q ss_pred ---------------c-hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHH
Q psy16653 85 ---------------S-TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQR 148 (301)
Q Consensus 85 ---------------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 148 (301)
. .=|..+.+.++--++..+=.++.+||.++-- ..... ...+.+.+
T Consensus 180 ~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~---~~~~~-------------~l~~g~k~--- 240 (438)
T COG2270 180 QTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKIS---SPPPT-------------ALRNGFKE--- 240 (438)
T ss_pred ccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhccccccccc---ccchH-------------HHHHHHHH---
Confidence 0 3566666666555544433333566654300 00000 00111111
Q ss_pred HHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHH-hcCCCCCcchhh---------------
Q psy16653 149 EIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFK-SAGSTLDPGFSY--------------- 212 (301)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~--------------- 212 (301)
-..+++++.+++ ....+++ ..++++ -|.+.+......+-. +.|.+..+....
T Consensus 241 -------L~~t~k~i~~~~-~i~~FLi---A~~~~~-DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~ 308 (438)
T COG2270 241 -------LKSTFKEIRGRK-NLVLFLI---ARFFYI-DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIA 308 (438)
T ss_pred -------HHHHHHHHhccc-chHHHHH---HHHHHH-hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344444443 2222222 222222 245666666666555 344442221111
Q ss_pred --Hhhhccc------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653 213 --IQDSLIS------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI 242 (301)
Q Consensus 213 --l~~~v~~------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~ 242 (301)
+.+|++. .++++|+++-+...|+++..++.
T Consensus 309 g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra 388 (438)
T COG2270 309 GFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRA 388 (438)
T ss_pred HHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhH
Confidence 2222221 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 243 GAFLVTLCFGFLVRHFGS-AATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 243 ~~~i~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
.++.+|++.+.+.+..|. +..+.....+..++.++... .|+.++++.
T Consensus 389 ~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~-v~~~~~~~~ 436 (438)
T COG2270 389 ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR-VKVPGRREA 436 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe-ecCCCCccc
Confidence 999999999999887764 33344444555555544444 555554443
No 137
>PRK10054 putative transporter; Provisional
Probab=97.92 E-value=6.6e-05 Score=66.47 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=54.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
.+|.+|++.|+++.|+.+...+++..++|.+.+.+.+ .+|+.+|.+.+++++++.++..+..|++
T Consensus 121 ~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 121 FADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999998774 6898888888877777766655555554
No 138
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.92 E-value=4.1e-05 Score=67.07 Aligned_cols=67 Identities=7% Similarity=0.066 Sum_probs=60.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
.+|.+|++.|+++.++.+....+|..+++.+.+++.++.|||..|.+.+++.++..++.++..||++
T Consensus 103 ~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 103 AASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 6788999999999999999999999999999999999999999999988888887777777788754
No 139
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.92 E-value=1.6e-06 Score=78.31 Aligned_cols=90 Identities=9% Similarity=-0.091 Sum_probs=77.0
Q ss_pred cccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc------hh
Q psy16653 14 GGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS------TY 87 (301)
Q Consensus 14 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~------~W 87 (301)
.+++.++....++++.+++.+++.|++.|...+....++.|..|+++||+..++++....+|.++++.+++. +|
T Consensus 320 ~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~ 399 (455)
T TIGR00892 320 NGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399 (455)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence 344445556677888888899999999999999999999999999999999999999999999999988765 59
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16653 88 TVIAIGCLAVPILLLV 103 (301)
Q Consensus 88 r~~f~~~~~~~~~~~~ 103 (301)
+..|++.++..++..+
T Consensus 400 ~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 400 KYIFYASGSIVVSAGL 415 (455)
T ss_pred chHHHHhhHHHHHHHH
Confidence 9999999887766554
No 140
>PRK10504 putative transporter; Provisional
Probab=97.91 E-value=8.5e-05 Score=67.31 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=56.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+++.++......++..++|.+.+.+.++.+|+..|.+...++.++.+......|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 123 VMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 679999999999999999999999999999999999999999998887777777766666555554
No 141
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.88 E-value=2.7e-06 Score=75.38 Aligned_cols=103 Identities=12% Similarity=-0.047 Sum_probs=84.1
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
+++..++..+.+++.+.....++.+.+.+.+++.|++.|...+....++.|..|+++||+..++++....+|..+++.++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~ 367 (408)
T PRK09874 288 EKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMG 367 (408)
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHH
Confidence 34445555555555555566677777888999999999999999999999999999999999999988888888888887
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+. +|+..|++.++..++..+..+
T Consensus 368 G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 368 AAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 64 899999999998888777665
No 142
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.86 E-value=8.5e-05 Score=67.83 Aligned_cols=67 Identities=25% Similarity=0.223 Sum_probs=56.7
Q ss_pred ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..+.+ |++.|+++.|+......++..++|.+.+.+.++.+|++.|++...++++..++.+++.|+.+
T Consensus 119 l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 119 IRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33554 77999999999999999999999999999999999999999888777777777766677654
No 143
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.85 E-value=2.7e-06 Score=73.32 Aligned_cols=101 Identities=17% Similarity=0.047 Sum_probs=89.7
Q ss_pred ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
.+.++..+..++.++....++.+.+.+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.+.
T Consensus 244 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~ 323 (352)
T cd06174 244 LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777788888888888888888999999999999999999999999999999999999999999999998888654
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 86 -----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 86 -----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+|+..+.+.+++.++..+..+
T Consensus 324 l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 324 LLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HhcccCcchHHHHHHHHHHHHHHHhe
Confidence 899999999999988877765
No 144
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.81 E-value=0.00065 Score=58.89 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
.+|.+|++.|+.+.++.+....++..++|.+.+.+.+..+|+..+.+.++..+++.+..+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 117 LPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6677888999999999999999999999999999999999998888777766665554443
No 145
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.80 E-value=2.9e-05 Score=67.23 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=60.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCF--GFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
++.-+|++.||+..++=++..++|+.+.|.+. +++..+.+|+..|++=++++++..++.++..++|.
T Consensus 142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88999999999999999999999999999988 88888889999999999999888888887776544
No 146
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.80 E-value=0.00025 Score=62.53 Aligned_cols=66 Identities=18% Similarity=0.370 Sum_probs=51.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--SAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+ |+..+.+.++..++.. +.....||++
T Consensus 125 i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~-~~~~~~~~~~ 192 (405)
T TIGR00891 125 VIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKNIPEAE 192 (405)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH-HHHHhCCCCh
Confidence 7899999999999999999999999999999998888766 8877766554444443 3344467654
No 147
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.75 E-value=0.00024 Score=63.33 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=59.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+++.++.+....++..++|.+.+.+.++.||+..|++.++..+++.+..++..||+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 129 VQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 77899999999999999999999999999999988888899999999888888777666666788653
No 148
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.74 E-value=6.2e-06 Score=72.93 Aligned_cols=89 Identities=8% Similarity=-0.054 Sum_probs=72.0
Q ss_pred hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q psy16653 21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCL 95 (301)
Q Consensus 21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~ 95 (301)
....++.+.+++.+++.+++.|...+....+..|..|+ +||+..++++....+|..+++.+++. +|+..|++.+
T Consensus 299 ~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~ 377 (393)
T PRK15011 299 MLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL 377 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34456666777788888888777777778889999885 59999999988888888888888765 8999999988
Q ss_pred HHHHHHHHHHhccccc
Q psy16653 96 AVPILLLVLFFLVVPE 111 (301)
Q Consensus 96 ~~~~~~~~~~~~~~~E 111 (301)
++.++.+++.+ ++||
T Consensus 378 ~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 378 VMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHHHHH-hhcC
Confidence 88888777776 6665
No 149
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.72 E-value=0.00036 Score=61.63 Aligned_cols=68 Identities=19% Similarity=0.082 Sum_probs=55.2
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|.+.|+.+.++.+....++..++|.+.+.+.+..||+..|.+.++..++..+...+..||+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 56788888999999999999999999999999999888899988888877766665555555677543
No 150
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.72 E-value=0.00019 Score=64.01 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=44.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFT 268 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~ 268 (301)
..|.+|++.|+++.++......++.++++.+.+.+.+..+|+.+|.+..
T Consensus 131 ~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 131 AVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 7899999999999999999999999999999988888889998887644
No 151
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.72 E-value=0.00026 Score=64.06 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=49.9
Q ss_pred ccccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHh
Q psy16653 220 MFDCIPFQ--VKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFT 278 (301)
Q Consensus 220 ~~e~~p~~--~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 278 (301)
.+|.+|++ .|+++.++.+...++|+.++|.+.+++.++.||+..|.+.++..+++.+..
T Consensus 125 v~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 125 LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 78999986 799999999999999999999999999999999988887665555544443
No 152
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.71 E-value=0.00017 Score=64.77 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=53.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+++.|+.+....+++.+++.+.+...+ +.+|+..|++.++++++..+..+++.||+
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 6778999999999999999999999998887765544 46899999988888887766666666664
No 153
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.68 E-value=0.00033 Score=62.16 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=57.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|..+.++......++..++|.+.+.+.++.+|+..+.+.+++++++.+..+...||+++
T Consensus 126 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 126 IQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 77889999999999999888888999999999999888899999988888888777766666777653
No 154
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.67 E-value=0.00025 Score=62.48 Aligned_cols=68 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
..|.+|++.|+.+.+.......++..+++.+.+.+.+..+|+.+|.+.++..++..+..+...||.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~ 183 (382)
T PRK10091 116 LSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD 183 (382)
T ss_pred HHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 67889999999999999999999999999999998888899999998888777776666666777543
No 155
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.63 E-value=1.2e-05 Score=70.20 Aligned_cols=99 Identities=11% Similarity=-0.049 Sum_probs=76.4
Q ss_pred ccccccccCccccchhhhhccCCeeE--EeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVS--IIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYC 81 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~--l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~ 81 (301)
++...++..+.+++.++..+.++... ++...++.|++.|...+..+.++.|..|+++|++..++.+....+|..+++.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~ 349 (377)
T TIGR00890 270 QKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL 349 (377)
T ss_pred hhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 34455566666666666666554322 3345678888888888888999999999999999999999999999999988
Q ss_pred hccc-----hhHHHHHHHHHHHHHHH
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLL 102 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~ 102 (301)
+.+. ||++.|.+.+++.++.+
T Consensus 350 ~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 350 IASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 7654 89999999887776643
No 156
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.62 E-value=0.00013 Score=53.71 Aligned_cols=66 Identities=24% Similarity=0.385 Sum_probs=57.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+++.++.+....++..+++.+.+.+.+..+++..+.+.+...+++.+..++..||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 677888999999999999999999999999999999888888888888888888877777766654
No 157
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.59 E-value=8e-06 Score=72.77 Aligned_cols=108 Identities=13% Similarity=-0.055 Sum_probs=83.5
Q ss_pred ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
.+.++..+.+++.++....++.+...+..++.|++.+...+....++.|..|+++||+..+++.....+|..+++.+.+.
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~ 370 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG 370 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence 34445555566666666677776667788888988887778888899999999999999999998888888888887765
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 86 -----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 86 -----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
|++..++..+...+++.++..+.+||.+
T Consensus 371 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 371 LGAMMTPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 7888888888777776666654667654
No 158
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.59 E-value=0.0013 Score=57.52 Aligned_cols=67 Identities=24% Similarity=0.441 Sum_probs=56.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..|.+|++.|+++.++.+....++..++|.+.+.+.+..+|+..+.+.++++++..++..+..||++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 104 MRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 5667788899999999999999999999999999999889999988888888777766666667653
No 159
>PRK03699 putative transporter; Provisional
Probab=97.57 E-value=0.00056 Score=60.50 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=48.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhh
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTF 279 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 279 (301)
+.|.+|++.|+.+.++.+....+++.++|.+.+.+.+ ..+|+.+|.+.+++.++..++.+
T Consensus 120 i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 120 ITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 7799999999999999988888899999988887765 56899998888877766554443
No 160
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.57 E-value=0.00026 Score=61.14 Aligned_cols=65 Identities=29% Similarity=0.446 Sum_probs=56.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
..|.+|++.|+.+.++.+....++..+++.+.+.+.+..+|+..+++.++++++..++...+.++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 110 IADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred ccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 89999999999999999999999999999999999888899999999999988887764444443
No 161
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.56 E-value=3.6e-05 Score=69.84 Aligned_cols=109 Identities=10% Similarity=-0.068 Sum_probs=69.8
Q ss_pred cccccccCccccchhhhhcc--CCeeE--EeeechhhhccCcc-cccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFKE--TRTVS--IIVTPAQNMASDER-DNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~--~~~~~--l~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
+++..+..+.+++.++.+.. .+... .+.+-++.+.+.+. ..|....++.|.+|+++|++..++.+....+|.+++
T Consensus 337 ~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~ 416 (479)
T PRK10077 337 PLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFV 416 (479)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544322 11111 11223333333332 346778999999999999999999988887777766
Q ss_pred H----Hhc-------cchhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 80 Y----CLG-------LSTYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 80 ~----~i~-------~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+ .+. ..+|++.|++.++..++..++.+++.||+.
T Consensus 417 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 417 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 3 333 127899999988888877777765778874
No 162
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.54 E-value=7.1e-05 Score=65.39 Aligned_cols=177 Identities=12% Similarity=0.027 Sum_probs=103.5
Q ss_pred hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hhHHHH
Q psy16653 19 EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TYTVIA 91 (301)
Q Consensus 19 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~Wr~~f 91 (301)
.+..+.++...+-+.-++.|++.+. -..-..|+--..|+++-.++.+........|..++.++|.. +.+.++
T Consensus 86 ~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~ 164 (412)
T PF01770_consen 86 LLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLN 164 (412)
T ss_pred HHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3344556777777778888887753 55667888888899999999999888888888888777754 677777
Q ss_pred HHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHH--H--HHHhcCCCCChHHHHHHHHHHHHH----Hhhccchhhhh
Q psy16653 92 IGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEV--S--LRFYRGSRYDVPLELAAIQREIDA----AARKKASFSDL 163 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~--~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 163 (301)
++......+.++..+ ++|-.++-+.-+++.++... . .++.++.+.+..++.+...+.... -+.-...+++.
T Consensus 165 ~isl~~~~~a~~~~~-fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 243 (412)
T PF01770_consen 165 YISLASVSLALLIAL-FLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSC 243 (412)
T ss_pred HHHHHHHHHHHHHHH-HcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHH
Confidence 777666666666666 78887765443333221111 0 000000000000000000000000 00011223334
Q ss_pred hccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc
Q psy16653 164 VSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA 202 (301)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 202 (301)
.++| .++-..+|+....+|++-+.+|...+.++.
T Consensus 244 y~~~-----~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v 277 (412)
T PF01770_consen 244 YSNP-----RLLLWSLWWAFATCGYYQVINYVQSLWDTV 277 (412)
T ss_pred hcCc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 4443 455566777777788888999998888887
No 163
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.54 E-value=0.00039 Score=62.74 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=48.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAF-LVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..|.+|++.|+++.|+.+....+++. .++.+...+....+|+..|++.+++.++..++.+++.||+.
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~ 212 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP 212 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence 77889999999999999888888864 44543333333448888888888777776666666666643
No 164
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.51 E-value=0.00048 Score=62.81 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=44.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTV 269 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 269 (301)
..|.+|++.|+.+.++......++..+++.+.+.+.++.+|+..|.+...
T Consensus 133 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 133 VIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999887765433
No 165
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.51 E-value=0.00093 Score=59.30 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=54.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
..|.+|++.|+++.|+......++..++|.+.+.+. ..+|+..|.+.++.+++..++.....||.
T Consensus 124 ~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 124 VIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 678999999999999999999999999999999988 67998888888877776665555555653
No 166
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.50 E-value=0.0013 Score=59.14 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=55.2
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-----Hh-------------hCcchhHHHHHHHHHHHHHHhhee
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV-----RH-------------FGSAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
+++.+|++.||++.|+....+++|..+++++.+.+. +. .+++.+.+++..+.++..++.++.
T Consensus 152 vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 152 ISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999998888888887777776644 22 234555667777777777676666
Q ss_pred cccCC--CCCHHHHHHHhc
Q psy16653 282 VPETK--GKTLAQIQRELG 298 (301)
Q Consensus 282 ~~et~--~~~~~~~~~~~~ 298 (301)
.++.+ +.+.++..+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~vlk 250 (462)
T PRK15034 232 MNDIASSRASIADQLPVLQ 250 (462)
T ss_pred CCCccccccCHHHHHHHhC
Confidence 65533 334555544443
No 167
>TIGR00898 2A0119 cation transport protein.
Probab=97.49 E-value=1.9e-05 Score=72.20 Aligned_cols=107 Identities=10% Similarity=-0.069 Sum_probs=81.7
Q ss_pred ccccccCccccchhhhhccCCe--eEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 6 LNQLALPDGGVGYEINFKETRT--VSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
.+.++..+.+++.++..+.++. +...+.-++.+++.+..++....+..|.+|++.|+...++.+....+|.++++.+.
T Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~ 466 (505)
T TIGR00898 387 TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV 466 (505)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHH
Confidence 4445555556666666655544 33344455666777778888999999999999999999999999999999998876
Q ss_pred cc---hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 84 LS---TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 84 ~~---~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.. ++...+.+.+...++..++.. ++||+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~ 498 (505)
T TIGR00898 467 YLGEKWLFLPLVLFGGLALLAGILTL-FLPETK 498 (505)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence 55 677888888888888877777 889874
No 168
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.44 E-value=0.00015 Score=63.12 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=54.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVT-LCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
..|.+|++.|+.+.++.+....++..+++ .+...+.+..+|+..+.+.+++.++..++.++..||++
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 108 VTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence 78999999999999999999999999999 46666667778988888888777776666666666543
No 169
>PRK11043 putative transporter; Provisional
Probab=97.44 E-value=0.0017 Score=57.51 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=54.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
..|.+|++.|+...+..+....++..++|.+.+.+.++.+|+..+.+.+++.++..+..+...++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 119 VIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 67899999999999998888899999999999999999999988888887777766665554443
No 170
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.44 E-value=2e-05 Score=68.97 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=76.1
Q ss_pred cccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---
Q psy16653 9 LALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--- 85 (301)
Q Consensus 9 ~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--- 85 (301)
++..+.++........++.+.+.+.+++.|++.|...+....++.|..|+ +|++..++++....+|..+++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~ 348 (375)
T TIGR00899 270 LAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE 348 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344456667777788899999888888888999999876 56799999998888898888877654
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 86 --TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 86 --~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
||+..|++.++..++..++.. +++|
T Consensus 349 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 375 (375)
T TIGR00899 349 RWSYHAVYWFAIVMLIVALFCLL-LIKD 375 (375)
T ss_pred hccchhHHHHHHHHHHHHHHHHh-eecC
Confidence 899999999988887777765 5554
No 171
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.43 E-value=5.7e-05 Score=68.31 Aligned_cols=99 Identities=11% Similarity=-0.166 Sum_probs=70.7
Q ss_pred ccccccccCccccchhhhhccCC-eeEEeeechhhhccCcccccchhhhhhccCCCC--CccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETR-TVSIIVTPAQNMASDERDNITLNMLQKEGDAPT--YLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+...++..+.+++.++.+...+ ...+.++..+.++|.|...+....+++|.+|++ +|....++.....++|..+++
T Consensus 76 rr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap 155 (493)
T PRK15462 76 RMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAP 155 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHH
Confidence 34556677777777665554322 122333444555677777788889999999986 799999999999999999998
Q ss_pred Hhccc-----hhHHHHHHHHHHHHHHH
Q psy16653 81 CLGLS-----TYTVIAIGCLAVPILLL 102 (301)
Q Consensus 81 ~i~~~-----~Wr~~f~~~~~~~~~~~ 102 (301)
.+..+ |||+.|.+.++..++.+
T Consensus 156 ~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 156 IACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 88765 89999998766444333
No 172
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.43 E-value=0.00065 Score=61.92 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=45.5
Q ss_pred ccccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q psy16653 220 MFDCIPFQV--KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV 272 (301)
Q Consensus 220 ~~e~~p~~~--R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 272 (301)
.+|.+|++. |+.+.++.+...++|+.++|.+.|++.++.||+..|.+.++...
T Consensus 130 i~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~ 184 (489)
T PRK10207 130 LSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLI 184 (489)
T ss_pred HHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 899998874 57889999999999999999999999999999988877554333
No 173
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.41 E-value=0.00058 Score=62.89 Aligned_cols=66 Identities=21% Similarity=0.371 Sum_probs=48.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhh-eecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTF-MVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~et 285 (301)
++|+.|.+.|..+.++.....-....+++.+...+..+.+||+.|.+..+...++.+..+ ++.|++
T Consensus 155 isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~ 221 (599)
T PF06609_consen 155 ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP 221 (599)
T ss_pred HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 899999999998888777666555567777776666667899999888877766654433 344443
No 174
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.38 E-value=2.6e-05 Score=70.73 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=81.7
Q ss_pred ccccCccccchhhhhc---------cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHH
Q psy16653 8 QLALPDGGVGYEINFK---------ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILY 78 (301)
Q Consensus 8 ~~~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~ 78 (301)
.+|+.+.+++-+..+. ..+++.++...++.|+|+....|....+++|.+|++.||++++++.....+|..+
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555442 4688889999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+..+... +|...|...++..++..++.+
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (475)
T TIGR00924 433 GGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA 465 (475)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence 8777654 788888888888777766665
No 175
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0012 Score=57.44 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=57.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC---cchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG---SAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
+++.||++++|++.|+.- .+|+|..+..++.|.+....+ |+.+..++....++..+..++...+
T Consensus 129 ~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 129 ASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred ccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999 999999999999999999999 8888888888888888777776654
No 176
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.25 E-value=4.6e-05 Score=68.63 Aligned_cols=71 Identities=14% Similarity=-0.078 Sum_probs=59.8
Q ss_pred ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+..+....++.|..|+++|++..++.+....+|.++++.+... +|++.|++.++.+++.+++.+++.||++
T Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 399 GWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence 3457777888999999999999999999999999988877554 8999999999998888877765678764
No 177
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.20 E-value=0.0025 Score=55.46 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=46.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------hCcchhH-HHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------FGSAATF-WIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~e 284 (301)
.+|.+|++.|+.+.++......++..+++.+.+.+.+. .+|+..+ +..+++..+..++.+...+|
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999999999988888888888877766653 3688777 44455544444444444444
No 178
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.16 E-value=5e-05 Score=69.39 Aligned_cols=101 Identities=5% Similarity=-0.096 Sum_probs=76.8
Q ss_pred ccccccCccccchhhhhccCC---------eeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653 6 LNQLALPDGGVGYEINFKETR---------TVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI 76 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~---------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~ 76 (301)
.+.+|+.+.+++-+..+.+.+ .+.++...++.|+|++...|+...++.+.+|++.||+.++.+.....+|.
T Consensus 352 ~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~ 431 (500)
T PRK09584 352 KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAA 431 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 455666777777666544433 34688899999999999999999999999999999999999998877887
Q ss_pred HHHHHhcc-----c----------hhHHHHHHHHHHHHHHHHHHh
Q psy16653 77 LYLYCLGL-----S----------TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 77 ~~~~~i~~-----~----------~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
.++..+.. . +.+..|...++.++++.++.+
T Consensus 432 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 432 LIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77655542 0 256777777777766555544
No 179
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.11 E-value=0.011 Score=51.54 Aligned_cols=53 Identities=8% Similarity=-0.085 Sum_probs=47.2
Q ss_pred echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 33 TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 33 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
.-.+.|+|.+...+...++++|.+|+++|++..++...+..+|.+++.++.+.
T Consensus 95 ~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 95 AFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred HHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888888889999999999999999999999999999999999888654
No 180
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.11 E-value=0.0039 Score=56.97 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=55.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
.+|.+|++.|+.+.++.....+++..+++.+..++.+ ..||+.+|.+.++..++..+..+. .||+.
T Consensus 132 ~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 132 KTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred HHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 7799999999999999999999999999999998888 469999999988877777655554 57653
No 181
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.09 E-value=0.0036 Score=55.53 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=53.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
++|.+|++.|+.+.++......++..+++.+...+.+. .||+..|++.++..++..+.. +..||+
T Consensus 119 ~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 119 STDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 79999999999999999999999999999988888875 489999988887776655543 345654
No 182
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.06 E-value=0.0024 Score=56.66 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=44.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGA-FLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
..+.+|++.|+++.|+.+....++. ..++.+.+.+.+..|++..++.......++.++.+++.+
T Consensus 130 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (402)
T TIGR00897 130 VVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNK 194 (402)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccC
Confidence 5678899999999999999999886 578888888888778655544444333333434444344
No 183
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.05 E-value=8.6e-05 Score=65.41 Aligned_cols=100 Identities=6% Similarity=-0.109 Sum_probs=81.0
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHHHHHh
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILYLYCL 82 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~~~~i 82 (301)
++++.++..+.++.-+..+++++.+.++...+++|+..|...+....|+.+. |+++|++.+++++ ....+|..+++.+
T Consensus 270 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~ 348 (382)
T TIGR00902 270 RDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF 348 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777888899999999999999999999999999999998 9999999999876 4677888888887
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLF 105 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~ 105 (301)
++. ++ ..|++.++.+++.+++.
T Consensus 349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 349 AGFIYPTLGA-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 765 65 55677777776655443
No 184
>KOG3764|consensus
Probab=97.01 E-value=0.00089 Score=57.78 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=63.4
Q ss_pred ccccCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCC
Q psy16653 220 MFDCIPFQV-KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT 289 (301)
Q Consensus 220 ~~e~~p~~~-R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 289 (301)
+++.||.+. |+++.|+....-.+|..++|.+.+.+.+..|.+.+|+++++++++...+-++.++.++..+
T Consensus 184 lAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 184 LADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 778888866 7999999999999999999999999999999999999999999999999888887766555
No 185
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.99 E-value=0.00097 Score=60.45 Aligned_cols=64 Identities=9% Similarity=-0.009 Sum_probs=50.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh---CcchhHHHHHHHHHHHHHHhheecc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF---GSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
++|.+|++.|+.+.|+......+|..+++.+..++.+.. +|+..|.+.+++.++..++.+++.+
T Consensus 147 i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 147 ITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred HHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999988887776653 4777777777766665555555444
No 186
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.97 E-value=0.00024 Score=71.60 Aligned_cols=108 Identities=14% Similarity=0.037 Sum_probs=78.6
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
++..++..+.+++.++.....+.+.+++.-++.|++.|...+....++.|..|+++||+..++.++...+|.+++..++.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 300 GLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred cchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666667777777888899999999999999999999999999999999999888888876665554
Q ss_pred c------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 85 S------TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
. +|...+++.+.+.++..++..+.+|++
T Consensus 380 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (1146)
T PRK08633 380 LFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413 (1146)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3 566667666665554444333244443
No 187
>PRK15075 citrate-proton symporter; Provisional
Probab=96.96 E-value=0.0084 Score=53.80 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=38.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH--------HHhhCcchhHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFL--------VRHFGSAATFWIFT 268 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l--------~~~~~~~~~~~~~~ 268 (301)
.+|.+|++.|+.+.++.....+++..+++.+.+.+ .+.+||+.+|++..
T Consensus 142 ~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 142 LAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 88999999999999999988888777776665554 24678988887643
No 188
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.96 E-value=0.029 Score=51.38 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=48.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhCcchhHHHHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR-----------------------HFGSAATFWIFTVCCVVGTV 276 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~-----------------------~~~~~~~~~~~~~~~~~~~~ 276 (301)
.+|.+|++.|+++.++.+....+|..+++.+...+.. ..+||..+.+.++.+++..+
T Consensus 140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999888877665432 13688888665555555444
Q ss_pred HhheecccCC
Q psy16653 277 FTFMVVPETK 286 (301)
Q Consensus 277 ~~~~~~~et~ 286 (301)
. .+.+||+.
T Consensus 220 ~-~~~lpESp 228 (502)
T TIGR00887 220 F-RLTIPETP 228 (502)
T ss_pred H-HHhCCCCH
Confidence 4 45579863
No 189
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.96 E-value=0.0019 Score=56.13 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--------SAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
++|.+|++.|+.+.++......+|..+++.+.+.+.++.+ |+.+|++.++..++..+..++..||.+
T Consensus 108 ~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 108 RLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred HHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 6788899999999999999999999999999998888888 999998888877776666555556653
No 190
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=96.94 E-value=0.0013 Score=59.64 Aligned_cols=65 Identities=15% Similarity=0.299 Sum_probs=56.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
.+|.+|++.|+++.++.+....++..+++.+.+.+.+. .+|+.+|.+.++..++..++.+...+|
T Consensus 156 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 156 IVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999888 499999999888877776666655554
No 191
>KOG1330|consensus
Probab=96.94 E-value=0.0001 Score=64.56 Aligned_cols=132 Identities=16% Similarity=0.112 Sum_probs=86.7
Q ss_pred hhhhhhccchhHHHHH-HHHHHHHHHhhhchHHHHHhHHHHHHhc-CCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653 159 SFSDLVSSRANLRALI-ISLGLMVFQQFSGVNAVIFYSNDIFKSA-GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA 236 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~ 236 (301)
++...+.++.+|++.+ ++..+|....+..-..-.+|.-.+.+.. |++...... +...+ ++|.+|..+|++..++.
T Consensus 86 Pl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~-ia~s~--IaD~f~~~~Rs~~~~if 162 (493)
T KOG1330|consen 86 PLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSP-IAPSL--IADSFPDDKRSRVLGIF 162 (493)
T ss_pred HHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcc-cchhH--hhhcCcchhhhHHHHHh
Confidence 3445555655565543 3444444443322223444455555554 444222111 11111 88999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCHHHH
Q psy16653 237 VAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQI 293 (301)
Q Consensus 237 ~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~ 293 (301)
+.+..+|+.++-.....+.+..+ ||+.|..-+++.+++.++..++.+|..++..|+.
T Consensus 163 y~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred hhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 99999999888877777777655 9999999999999999999888888766544443
No 192
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.81 E-value=0.00025 Score=62.36 Aligned_cols=76 Identities=13% Similarity=-0.015 Sum_probs=62.9
Q ss_pred eeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653 31 IVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLF 105 (301)
Q Consensus 31 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~ 105 (301)
....++.|++.+...|....++.|..|+++++...+.++....+|..+++.+++. +|++.|.+.+...++..+..
T Consensus 289 ~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 289 APALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3466778887777889999999999999998888888888888999888888765 89999999888888776665
Q ss_pred h
Q psy16653 106 F 106 (301)
Q Consensus 106 ~ 106 (301)
+
T Consensus 369 ~ 369 (381)
T PRK03633 369 L 369 (381)
T ss_pred H
Confidence 5
No 193
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0054 Score=54.67 Aligned_cols=99 Identities=14% Similarity=-0.037 Sum_probs=79.5
Q ss_pred ccccCccccchhhhhcc--CCeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHHHhc
Q psy16653 8 QLALPDGGVGYEINFKE--TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 8 ~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
..|..+.++|.++.+.. .+...+.++-.+.++|.|..=+....++.|..|++. |-...+++..+.++|.++++++.
T Consensus 96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 44556667787777777 477888899999999999999999999999998553 55666677888889999988887
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
.+ ||...|.+.++-..+.++..+
T Consensus 176 ~~~~~~~g~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 176 GLLAINYGWHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence 65 999999988877776665554
No 194
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=96.73 E-value=0.00042 Score=61.31 Aligned_cols=108 Identities=13% Similarity=0.035 Sum_probs=77.9
Q ss_pred cccccccCccccchhhhhcc-CCeeEEee----echhhhccCcccccchhhhhhccCCCCCccchhcHHHH-HHHHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFKE-TRTVSIIV----TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM-FLTLGILY 78 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~-~~~~~l~~----~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~ 78 (301)
+++.++...+++=-.+.+.. ++.+.... .-.++|+..|...+.+..|+.|..|++.|++.++++.. ...+|..+
T Consensus 274 ~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i 353 (400)
T PF03825_consen 274 WLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI 353 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH
Confidence 44445554444444444454 33333332 23469999999999999999999999999999998775 46788888
Q ss_pred HHHhccc-----------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 79 LYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 79 ~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
+..++++ .|...+.+.+...++..++.+++.+|+
T Consensus 354 G~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 354 GSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 8888765 477788888888888877777566654
No 195
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.67 E-value=0.00033 Score=64.09 Aligned_cols=102 Identities=15% Similarity=-0.111 Sum_probs=82.3
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
.++...+...++++.+..+++++.+..++.-++.|++.....+...+.+-+..|++.|||..+++++....+..+|..+.
T Consensus 284 ~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 284 RRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred chhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677778888888899999998888999999998888888889999999999999999999888777777777665
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHH
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLF 105 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~ 105 (301)
+. |-+..+.+.++..++..++.
T Consensus 364 G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 364 GFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 54 77888877776555444443
No 196
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.66 E-value=0.013 Score=51.80 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=44.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHHHHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-GSAATFWIFTVCCVVGTV 276 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 276 (301)
..|.+| +.|+.+.+........+..+++.+.+.+.++. +|+..+.++++..++...
T Consensus 122 ~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~ 178 (393)
T PRK09705 122 IKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF 178 (393)
T ss_pred HHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 677777 67999999999999999999999999888875 788877666655554433
No 197
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.65 E-value=0.034 Score=49.87 Aligned_cols=66 Identities=23% Similarity=0.139 Sum_probs=46.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV--------RHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
++|.+|++.|+...++.......|..+++.+...+. +..|||.+|.+.++..++... .....||++
T Consensus 149 i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~-~~~~~~e~~ 222 (432)
T PRK10406 149 MSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALW-LRRQLDETS 222 (432)
T ss_pred HHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHH-HHhcCCCCc
Confidence 789999999999999887777777777666544433 257899999877766665543 333456654
No 198
>PRK09952 shikimate transporter; Provisional
Probab=96.65 E-value=0.00042 Score=62.24 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=61.1
Q ss_pred eeechhhhccCcccccchhhhhhccCCCCCccchhcHH-HHHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHH
Q psy16653 31 IVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFF-QMFLTLGILYLYCLGLS-------TYTVIAIGCLAVPILLL 102 (301)
Q Consensus 31 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~~G~~~~~~i~~~-------~Wr~~f~~~~~~~~~~~ 102 (301)
++..++.|++.+...+....++.|.+|+++|+...++. +.+..+|..+++.+... +|+..+...++.+++.+
T Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~ 426 (438)
T PRK09952 347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA 426 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 34556667888877888899999999999999888874 44455676666655433 58998888888888777
Q ss_pred HHHhcccccch
Q psy16653 103 VLFFLVVPETP 113 (301)
Q Consensus 103 ~~~~~~~~Esp 113 (301)
+..+ .++|+.
T Consensus 427 v~~~-~~~~~~ 436 (438)
T PRK09952 427 MTAL-LMKDNQ 436 (438)
T ss_pred HHHH-Hccccc
Confidence 7766 667754
No 199
>KOG2816|consensus
Probab=96.62 E-value=0.034 Score=50.13 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=61.4
Q ss_pred cccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 42 ERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 42 g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+.......+|++|.+..++|....++....+..|..+++.++.. |--..|.+.....++..+...+.+|||-
T Consensus 127 ~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl 203 (463)
T KOG2816|consen 127 SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL 203 (463)
T ss_pred hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34666778899999999999999999999888888888888876 6666888888888888888887899984
No 200
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.62 E-value=0.035 Score=50.28 Aligned_cols=68 Identities=18% Similarity=0.069 Sum_probs=52.5
Q ss_pred ccccCCcchh--hhHHHHHHHHHHHHHHHHHHHHHHHH--Hhh-------------CcchhHHHHHHHHHHHHHHhheec
Q psy16653 220 MFDCIPFQVK--GIATGIAVAVNWIGAFLVTLCFGFLV--RHF-------------GSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 220 ~~e~~p~~~R--~~~~~~~~~~~~~~~~i~~~~~~~l~--~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
.+|+.|++.| +.+.++.+....+|+++++.+.+... +.+ +.+..|.+-+++.+++..+..+..
T Consensus 139 iaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 139 LADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 8999999876 57899999999999999988776542 221 345578887888888888888888
Q ss_pred ccCCC
Q psy16653 283 PETKG 287 (301)
Q Consensus 283 ~et~~ 287 (301)
||...
T Consensus 219 ~E~~~ 223 (477)
T TIGR01301 219 KENPL 223 (477)
T ss_pred eccCC
Confidence 88653
No 201
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.61 E-value=0.016 Score=51.36 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=48.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
+.|.+|++.|+++.|+......++..++|.+.+.+.+.. +...+.+.+.+.+++. +....+||.+
T Consensus 113 i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~~ 177 (393)
T PRK11195 113 LTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LFNLFIPRLG 177 (393)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence 789999999999999999999999999999999988753 5455555444444443 3334566543
No 202
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=96.60 E-value=0.017 Score=50.90 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=50.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
..|..+.+.++...+.......+|..+++...+++.+++||+.+|.+.+++.++..+..+...|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 122 AAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45666777677777777777788888998888889999999999999988887766666554444
No 203
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.56 E-value=0.074 Score=48.05 Aligned_cols=37 Identities=3% Similarity=-0.088 Sum_probs=33.0
Q ss_pred chhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 47 TLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 47 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
+-..+..|.++.++-.|..+++..+.++|.++++.+.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~ 185 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI 185 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988664
No 204
>KOG2615|consensus
Probab=96.54 E-value=0.0059 Score=52.61 Aligned_cols=124 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred hhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhc--CCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653 159 SFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSA--GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA 236 (301)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~ 236 (301)
+.+..+.++.-||+.+..+.+.......-...-.+|.-..+... |.. ...... +..+ ++|+++++.|+.+++..
T Consensus 86 ~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~-kgnl~v-~rAi--isdV~sek~r~l~ms~v 161 (451)
T KOG2615|consen 86 PLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIF-KGNLSV-IRAI--ISDVVSEKYRPLGMSLV 161 (451)
T ss_pred hhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cCchHH-HHHH--HHhhcChhhccceeeee
Confidence 34555666656777777666655543332233333333333222 322 111111 1111 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hhCcchhHH---HHHHHHHHHHHHhheecccCC
Q psy16653 237 VAVNWIGAFLVTLCFGFLVR---HFGSAATFW---IFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 237 ~~~~~~~~~i~~~~~~~l~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~et~ 286 (301)
.....+|.++||++.+++.. ..|....+. +..+++........+++|||-
T Consensus 162 ~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 162 GTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred ehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999887 344322111 112222222344456689874
No 205
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.53 E-value=0.0008 Score=59.51 Aligned_cols=104 Identities=9% Similarity=-0.054 Sum_probs=79.6
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC 81 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~ 81 (301)
+++++.++..+++++..+...+++.+.++..++++|++.+........+..|..+++.|+...+. ++....+|..+++.
T Consensus 283 ~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~ 362 (396)
T TIGR00882 283 AKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLST 362 (396)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHH
Confidence 35566666767777666667788888888889999988765555666678888888888887666 67778888888877
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+++. ||+..|.+.++..++..+...
T Consensus 363 l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 363 LAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 6655 899999999998887776654
No 206
>KOG3810|consensus
Probab=96.48 E-value=0.042 Score=46.89 Aligned_cols=199 Identities=13% Similarity=0.088 Sum_probs=118.1
Q ss_pred hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-------hhHHHHHHH
Q psy16653 22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-------TYTVIAIGC 94 (301)
Q Consensus 22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-------~Wr~~f~~~ 94 (301)
-+.++.+.+=+.-++.|...+ .-..-++|+-+..+|+++.++.+..-.....|...+..++.. +.+.+-.+.
T Consensus 90 v~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~IS 168 (433)
T KOG3810|consen 90 VFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYIS 168 (433)
T ss_pred HhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhh
Confidence 445666777777777777653 444567899999999999999999888888888888777654 556666665
Q ss_pred HHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHH-HHHHHHHHhhccchhhhhhccchhHHHH
Q psy16653 95 LAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAA-IQREIDAAARKKASFSDLVSSRANLRAL 173 (301)
Q Consensus 95 ~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (301)
..-..+..++.. ++|-.+|-+.-+.+.++.. ..+....+ ...+..+ .+..... -..++.+..++| .
T Consensus 169 L~~~~ia~~~A~-fLP~v~rSl~f~~~~~~~~--v~~~e~~~--~~~~~~~~l~~~~~~---l~~~l~~~y~np-----~ 235 (433)
T KOG3810|consen 169 LAEVTIAVLLAL-FLPRVKRSLYFHRLEDKIS--VGDLEEMN--PQASYMSYLRGAFVL---LWRDLQECYSNP-----R 235 (433)
T ss_pred HHHHHHHHHHHh-hCCCCchhhhhhcccccce--eccchhcC--ccchhhHHHHHHHHH---HHHHHHHHhcCc-----h
Confidence 555555555555 8887776655444433211 11110010 0111111 0100000 011233344444 3
Q ss_pred HHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 174 IISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGF 253 (301)
Q Consensus 174 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~ 253 (301)
+.-..+|+...-+|++-+.+|.-.+-++.. + +.-....|..-++.-+.++++.++.++
T Consensus 236 ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~-~---------------------~~~~vyNG~veAv~tlLGa~~~~~~g~ 293 (433)
T KOG3810|consen 236 LLKWSLWWALASCGYYQVTNYTQILWKEVA-P---------------------NPANVYNGAVEAVSTLLGAIAALAAGY 293 (433)
T ss_pred hhhhHHHHHHhhchhHHHHHHHHHHHHhhC-C---------------------CchhhhcCHHHHHHHHHHHHHHHHHHh
Confidence 444667777777788889898888877763 2 112345666666667777777777776
Q ss_pred HHH
Q psy16653 254 LVR 256 (301)
Q Consensus 254 l~~ 256 (301)
+.-
T Consensus 294 l~i 296 (433)
T KOG3810|consen 294 LNI 296 (433)
T ss_pred eee
Confidence 653
No 207
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.45 E-value=0.0012 Score=66.62 Aligned_cols=80 Identities=8% Similarity=-0.079 Sum_probs=62.4
Q ss_pred CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHH
Q psy16653 25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS------TYTVIAIGCLAVP 98 (301)
Q Consensus 25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~------~Wr~~f~~~~~~~ 98 (301)
.+.+.+++.-++.|++.|...+...+++.+.+|+++||+++++.+....+|..+++.+... ++...+++.++..
T Consensus 332 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~ 411 (1140)
T PRK06814 332 RHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALAN 411 (1140)
T ss_pred cccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5556666778889999999999999999999999999999999999888888877766543 5666666666554
Q ss_pred HHHHHH
Q psy16653 99 ILLLVL 104 (301)
Q Consensus 99 ~~~~~~ 104 (301)
++..+.
T Consensus 412 ~~~~~~ 417 (1140)
T PRK06814 412 LIVAIL 417 (1140)
T ss_pred HHHHHH
Confidence 444433
No 208
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.39 E-value=0.041 Score=49.47 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=38.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAAT 263 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 263 (301)
+...+|++.|++++|+.+....+|.++++.+.+. ...+||+..
T Consensus 139 I~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 139 IFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 8889999999999999999999999999999998 556788754
No 209
>KOG0254|consensus
Probab=96.38 E-value=0.11 Score=47.76 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=50.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh--CcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF--GSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
.+|+.|++.||.-.+..+....+|..++ ++.+...++. +|+..+.+..+.+++-.+. .++.||+.
T Consensus 167 ~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 167 ISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred HhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 6788899999999999998888777766 6666666553 7987777777777777777 66678754
No 210
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=96.34 E-value=0.0032 Score=57.09 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----h-------hHH-HH
Q psy16653 25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----T-------YTV-IA 91 (301)
Q Consensus 25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~-------Wr~-~f 91 (301)
++.+.++..-++.+++.|........++.+.+|++++|...++.+...++|..++..++.. | .++ ..
T Consensus 349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i 428 (468)
T TIGR00788 349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLI 428 (468)
T ss_pred CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHH
Confidence 3344556667788888889999999999999999999999999999999999998876543 1 222 23
Q ss_pred HHHHHHHHHHHHHHhccccc
Q psy16653 92 IGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~E 111 (301)
.+..++.++.+...+ ++|+
T Consensus 429 ~i~~~~~l~~l~~~~-llP~ 447 (468)
T TIGR00788 429 LGHSLAPLLPLPLLH-LLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 344555555555555 7886
No 211
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=96.12 E-value=0.043 Score=48.89 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=49.4
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hhCcchhHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR--------------------------HFGSAATFWIFTVCCVV 273 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~--------------------------~~~~~~~~~~~~~~~~~ 273 (301)
..+..|++.|++..++.+....+|..++|.+.+.+.. ..+|+.+|.+.+++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~ 198 (410)
T TIGR00885 119 ILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA 198 (410)
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999887742 23588888888877666
Q ss_pred HHHHhh-eeccc
Q psy16653 274 GTVFTF-MVVPE 284 (301)
Q Consensus 274 ~~~~~~-~~~~e 284 (301)
..++.. ...||
T Consensus 199 ~~~~~~~~~~p~ 210 (410)
T TIGR00885 199 VALLIMLTKMPA 210 (410)
T ss_pred HHHHHHHhcCCC
Confidence 554443 33554
No 212
>KOG2532|consensus
Probab=96.11 E-value=0.028 Score=50.78 Aligned_cols=65 Identities=15% Similarity=0.321 Sum_probs=58.2
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-FGSAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
.+.-.|++.|++..++......+|.+++..+.+.+.+. .||+.+|.+.+++.++..++.+++..|
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 78889999999999999999999999999999999998 999999999999988887776665544
No 213
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.94 E-value=0.0035 Score=56.43 Aligned_cols=108 Identities=12% Similarity=-0.103 Sum_probs=67.1
Q ss_pred ccccccCccccchhhhh----ccC------CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHH
Q psy16653 6 LNQLALPDGGVGYEINF----KET------RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~----~~~------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G 75 (301)
++.++..+.++..+..+ ... +...+............+..+....+..|.+|.+.|++..++......++
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~ 397 (451)
T PF00083_consen 318 LLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIG 397 (451)
T ss_pred ccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccc
Confidence 55666666665555543 111 22222222222222222456777789999999999999999988877777
Q ss_pred HHHHHHhccc----hh-HHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 76 ILYLYCLGLS----TY-TVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 76 ~~~~~~i~~~----~W-r~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
..+++.+... .+ ...+.+.+...++..+..++++||+.
T Consensus 398 ~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 398 GFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETK 440 (451)
T ss_pred ccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCC
Confidence 7776655443 22 34555666666666666666999984
No 214
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=95.91 E-value=0.0013 Score=57.87 Aligned_cols=100 Identities=12% Similarity=-0.036 Sum_probs=71.9
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHH-HHHHHHHHHHHHhc
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQ-MFLTLGILYLYCLG 83 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~~~~i~ 83 (301)
+++.++..+.+++.++....++.+.+++..++.|++.+...+....++.+. +++++++..++.+ .....|..+++.++
T Consensus 271 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~ 349 (382)
T PRK11128 271 DLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLS 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666667788888888899999999998899999999987 6777888888775 55566767777766
Q ss_pred cc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 84 LS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 84 ~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+. ++ ..++..+..+++.+++..
T Consensus 350 G~l~~~~g~-~~~~~~~~~~~~~~~~~~ 376 (382)
T PRK11128 350 GFLYQHLGA-GVFWVMALVALPALFIRP 376 (382)
T ss_pred HHHHHhccH-HHHHHHHHHHHHHHHHHH
Confidence 54 66 456666666665554443
No 215
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.86 E-value=0.004 Score=55.74 Aligned_cols=81 Identities=15% Similarity=-0.113 Sum_probs=58.5
Q ss_pred ccccccccCccccchhhhhcc-CCeeEEeeechhhhccCcccccchhhhhhccCC-------CCCccchhcHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKE-TRTVSIIVTPAQNMASDERDNITLNMLQKEGDA-------PTYLSALGSFFQMFLTLG 75 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-------~~~Rg~~~~~~~~~~~~G 75 (301)
++...++..+.+++.++..+. .+.+.+++..++.|++.|...+....+++|..+ ++++|...++++....+|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g 366 (437)
T TIGR00792 287 KILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLG 366 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 344555555555555555443 344555667778899999889999999999875 556799999999888888
Q ss_pred HHHHHHhcc
Q psy16653 76 ILYLYCLGL 84 (301)
Q Consensus 76 ~~~~~~i~~ 84 (301)
..+++.+.+
T Consensus 367 ~~lg~~i~g 375 (437)
T TIGR00792 367 QALAGFLVG 375 (437)
T ss_pred HHHHHHHHH
Confidence 888876654
No 216
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=95.83 E-value=0.003 Score=57.27 Aligned_cols=106 Identities=9% Similarity=-0.188 Sum_probs=81.1
Q ss_pred cccccccCccccchhhhhc--------cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFK--------ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGI 76 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~ 76 (301)
++..+++.++.+-.+...+ ..+.+.+.+.-++.|+..|+..+..-.+.+|..|+++.+...+++....-...
T Consensus 350 ~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss 429 (477)
T PF11700_consen 350 RTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASS 429 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence 4455555555333333333 56667788888999999999999999999999999999999999998888888
Q ss_pred HHHHHhccc------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 77 LYLYCLGLS------TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 77 ~~~~~i~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
.+++.+-+. +-|+.++...++-++.+++.+ ++++
T Consensus 430 ~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~-~v~~ 469 (477)
T PF11700_consen 430 WLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF-FVDV 469 (477)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh-hccc
Confidence 888776543 578888877777777776665 5654
No 217
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.83 E-value=0.79 Score=41.04 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=49.0
Q ss_pred cchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHH
Q psy16653 157 KASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIA 236 (301)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~ 236 (301)
...|+..+++|.+...+-..++... +..+...+..+++..|++ ....|+.
T Consensus 249 ~~~w~~Y~~q~vflas~alalLY~T------VLsf~~lmt~yl~~~G~s------------------------~~~igi~ 298 (432)
T PF06963_consen 249 IRGWRTYFRQPVFLASFALALLYFT------VLSFGGLMTAYLKSQGYS------------------------PSVIGIF 298 (432)
T ss_pred hccHHHHHhCHHHHHHHHHHHHHHH------HhcCcHHHHHHHHHCCCC------------------------HHHHHHH
Confidence 3467777777733332322222221 223344566777777877 5567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653 237 VAVNWIGAFLVTLCFGFLVRHFGS 260 (301)
Q Consensus 237 ~~~~~~~~~i~~~~~~~l~~~~~~ 260 (301)
-..+.+.++.+++++|++.+++|.
T Consensus 299 R~~gav~Gl~gT~~~p~l~~riGl 322 (432)
T PF06963_consen 299 RGLGAVFGLLGTWVYPWLMKRIGL 322 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999998883
No 218
>KOG2504|consensus
Probab=95.62 E-value=0.00077 Score=61.47 Aligned_cols=105 Identities=17% Similarity=0.019 Sum_probs=95.4
Q ss_pred cccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhcc
Q psy16653 5 TLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGL 84 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~ 84 (301)
+++.+++...+++.....+.++++.+...-.+.|+..|.........+.|..+.++-..+.++......++.++++.+++
T Consensus 366 ~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 366 VLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 45667788888888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred c------hhHHHHHHHHHHHHHHHHHHhcccc
Q psy16653 85 S------TYTVIAIGCLAVPILLLVLFFLVVP 110 (301)
Q Consensus 85 ~------~Wr~~f~~~~~~~~~~~~~~~~~~~ 110 (301)
. +|...|+..++..++..+.++ ..|
T Consensus 446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~ 476 (509)
T KOG2504|consen 446 LLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR 476 (509)
T ss_pred eeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence 6 699999999999999888776 565
No 219
>PTZ00207 hypothetical protein; Provisional
Probab=95.51 E-value=0.24 Score=46.20 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=43.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecc
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (301)
+.+.+| +.||.+.|+......+|+.+.+.+...+.. .+++..|++.+++.++.+++.+.+.+
T Consensus 145 i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 145 VLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred HHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 677887 679999999999999999765555444443 24666777777777666655554443
No 220
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=95.20 E-value=0.12 Score=42.43 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=38.9
Q ss_pred CCccchhcHHHHHHHHHHHHHHHh---c-cc------hhHHHHHHHHHHHHHHHHHHh
Q psy16653 59 TYLSALGSFFQMFLTLGILYLYCL---G-LS------TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 59 ~~Rg~~~~~~~~~~~~G~~~~~~i---~-~~------~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
++|+..+.+...+.++|.+++.+. + .. .|++++.+.+++.++.+++..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ 59 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYI 59 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999887433 2 11 899999999999988887776
No 221
>KOG2533|consensus
Probab=95.15 E-value=0.019 Score=52.16 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=60.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
++..|.++.|+...|+.++...+|+++++.+...+.+ ..||++.|++-+++.+...+++++++|+...
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 7778899999999999999999999999998877533 4689999999999999999999999998654
No 222
>PRK09848 glucuronide transporter; Provisional
Probab=95.13 E-value=0.0064 Score=54.79 Aligned_cols=80 Identities=13% Similarity=-0.026 Sum_probs=58.2
Q ss_pred ccccccccCccccchhhhhccC--CeeEEeeechhhhccCcccccchhhhhhccCCCC-------CccchhcHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKET--RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPT-------YLSALGSFFQMFLTL 74 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~-------~Rg~~~~~~~~~~~~ 74 (301)
++...++..+++++.++..+.+ +++.+.+..++.|+|.+...+...++.+|..|.+ ++|...++++....+
T Consensus 294 ~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~kl 373 (448)
T PRK09848 294 KNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKC 373 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHH
Confidence 3455566666666665555533 4555566677899999999999999999998754 358888998888888
Q ss_pred HHHHHHHhc
Q psy16653 75 GILYLYCLG 83 (301)
Q Consensus 75 G~~~~~~i~ 83 (301)
|..++..+.
T Consensus 374 g~aig~~i~ 382 (448)
T PRK09848 374 GQAIGGSIP 382 (448)
T ss_pred HHHHHHHHH
Confidence 888876553
No 223
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=95.11 E-value=0.69 Score=42.17 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=30.8
Q ss_pred hhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 49 NMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 49 ~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
..+..|.++.+|-.|..+++..+.++|.+++.-+.
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~ 200 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLT 200 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999876553
No 224
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=95.08 E-value=0.0018 Score=57.05 Aligned_cols=111 Identities=11% Similarity=-0.098 Sum_probs=84.8
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYC 81 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~ 81 (301)
||+.+.++..+..+=-..++++++.+.+.+.+.++|+-.+........|+++.+|++...+...+ .+.+..+|..+...
T Consensus 288 ~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~ 367 (412)
T PF01306_consen 288 AKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSP 367 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555556556666667788999999999999999999999999999999999999887777666 46777777777666
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+++. |.+..|++.+.+.+...++..+.+++.+
T Consensus 368 ~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 368 LAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred hHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 6654 8899999999998888888875565443
No 225
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.07 E-value=0.067 Score=46.72 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=47.3
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV--------RHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
.+|.+|++.|+...++......+|..+++.+.+.+. +..+|+.++.+.+.+.+++..+. ...||+
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~ 193 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLR-RNLEET 193 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 778899999999999999999999999888766553 34578878777666555544333 334554
No 226
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.00 E-value=0.052 Score=44.66 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=39.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH-HHHHHhheec
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV-VGTVFTFMVV 282 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 282 (301)
..+.||. .||++.|+.-....+++.+-..+...+.+. +....+.+.+.... ++.+..++..
T Consensus 121 ~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 121 CVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhhhee
Confidence 6688986 699999999999999988888777666654 33233334444333 3333334433
No 227
>KOG0253|consensus
Probab=94.93 E-value=0.0048 Score=53.05 Aligned_cols=104 Identities=11% Similarity=-0.088 Sum_probs=80.8
Q ss_pred cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-
Q psy16653 7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS- 85 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~- 85 (301)
|..++.++++..++-....+.....+.-+..-+..++.+.++++|.-|++|.+-|+...|.-..+.-+|.++.++++-.
T Consensus 414 Mal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~ 493 (528)
T KOG0253|consen 414 MALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRA 493 (528)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHh
Confidence 4455667777777777766666666666666667788899999999999999999999999999999999999988733
Q ss_pred --hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 86 --TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 86 --~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
+=..+..+.+...++..+... ++|=
T Consensus 494 e~s~sl~i~vy~~~~ilagIavc-ffPi 520 (528)
T KOG0253|consen 494 ELSTSLPIFVYGALFILAGIAVC-FFPI 520 (528)
T ss_pred ccceeehHHHHHHHHHHHHHHhe-eeee
Confidence 444556677777777777777 6663
No 228
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=94.88 E-value=0.019 Score=51.23 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=52.1
Q ss_pred ccccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 220 MFDCIPFQV--KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 220 ~~e~~p~~~--R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
..|++|++. |..+.++.+...++|++++|.+.+++.+++||...|...++-..++.+..++..
T Consensus 142 lg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 142 LGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 888887643 788899999999999999999999999999998888777777777776665543
No 229
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=94.86 E-value=0.0064 Score=50.71 Aligned_cols=88 Identities=11% Similarity=-0.069 Sum_probs=68.1
Q ss_pred ccchhhhhccCC--eeEEeeechhhhccCcccccchhhhhhccCCC-CCccchhcHHHH-HHHHHHHHHHHhccc-----
Q psy16653 15 GVGYEINFKETR--TVSIIVTPAQNMASDERDNITLNMLQKEGDAP-TYLSALGSFFQM-FLTLGILYLYCLGLS----- 85 (301)
Q Consensus 15 ~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~-~~~~G~~~~~~i~~~----- 85 (301)
.++.++..+..+ .+.+++.|+..|++.|...+....++.|+.|+ ++|+...+.... ...+|.++++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (338)
T COG0477 80 LLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159 (338)
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666655 88899999999999999999999999999998 788888888777 577777777655432
Q ss_pred --hhHHHHHHHHHHHHHHH
Q psy16653 86 --TYTVIAIGCLAVPILLL 102 (301)
Q Consensus 86 --~Wr~~f~~~~~~~~~~~ 102 (301)
+||..|...........
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (338)
T COG0477 160 LWGWRAAFLLAALLGLLLL 178 (338)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 79997777776665443
No 230
>KOG3762|consensus
Probab=94.61 E-value=0.023 Score=51.30 Aligned_cols=100 Identities=11% Similarity=-0.080 Sum_probs=75.5
Q ss_pred cccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHH-HHHHHHHHHHHhccc
Q psy16653 7 NQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQM-FLTLGILYLYCLGLS 85 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~~~~i~~~ 85 (301)
+..++.++++=-+.-....|.|+.+-.-+++|+..+..+.....|++...||+-|..+.++.+. ...+|--+|.++++.
T Consensus 439 ~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred eeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 3444444444445556778999999999999999999999999999999999999999998764 345555555555544
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 86 -----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 86 -----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+=|..|.+.++-+++.+++..
T Consensus 519 ~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 519 VVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred hheeehhHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665554
No 231
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=94.53 E-value=0.11 Score=49.16 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------CcchhHHHHHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF----------------------GSAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~----------------------~~~~~~~~~~~~~~~~~~~ 277 (301)
+.|.+|++.|+...|+.+....+|..+++.+.+.+.+.+ +|+..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999998887643 1445677777777666554
Q ss_pred hheecccC
Q psy16653 278 TFMVVPET 285 (301)
Q Consensus 278 ~~~~~~et 285 (301)
.++ .|++
T Consensus 277 l~~-~p~~ 283 (633)
T TIGR00805 277 FFF-FPKA 283 (633)
T ss_pred HHh-Cccc
Confidence 443 4443
No 232
>KOG3762|consensus
Probab=94.52 E-value=0.18 Score=45.74 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=50.9
Q ss_pred ccccCCcchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhe
Q psy16653 220 MFDCIPFQVKGIATGIAVAVN-WIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFM 280 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~-~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (301)
++.+.|++.|+++.++..... -+|-.+|.++.+.+.+.++.+..|.++++.|++.+++...
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988664 5566788888888999999888999999888877766543
No 233
>KOG0569|consensus
Probab=94.40 E-value=0.14 Score=46.27 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=51.3
Q ss_pred ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh-----ccchhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL-----GLSTYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
|..|+...+.+|.+|++.|..++++-.....+...+-... ...|= +.|++..++..+.++..++++|||.
T Consensus 384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 4678889999999999999999887554443333332211 22232 8888889999998888888999984
No 234
>KOG0255|consensus
Probab=94.40 E-value=0.52 Score=43.40 Aligned_cols=63 Identities=14% Similarity=0.372 Sum_probs=51.5
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
.+|+++++.|+.+..+ ....+.++..++....++.. +|+..+++..+...+..++ +++.||.+
T Consensus 196 ~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 196 VAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred heeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 8999999999999999 88888899988888888876 7888888888777777666 44455643
No 235
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=94.28 E-value=0.015 Score=50.77 Aligned_cols=109 Identities=6% Similarity=-0.122 Sum_probs=85.2
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|++..+++.+..+.++...+......+.+.-++.|.+.|+.....-.|.++..|+++-++..+++....-.+..+++.+
T Consensus 317 ~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 317 SKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred CceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence 45666667766666666666666666677778899999999999999999999999999999999998887777777766
Q ss_pred ccc------hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 83 GLS------TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 83 ~~~------~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
-.. +=|.-+....++-++-+++.. .+|+.
T Consensus 397 v~v~t~iTg~~r~g~~~i~vll~iGl~~L~-~v~~~ 431 (438)
T COG2270 397 VAVITQITGSSRAGVLSIIVLLLIGLLLLL-RVKVP 431 (438)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHhhHhhEE-eecCC
Confidence 433 677777777776666666665 77764
No 236
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.13 E-value=0.02 Score=50.34 Aligned_cols=79 Identities=10% Similarity=-0.028 Sum_probs=65.4
Q ss_pred eEEeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHH
Q psy16653 28 VSIIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPI 99 (301)
Q Consensus 28 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~ 99 (301)
..+.++-.+.++|.|+.=|....+.+|-+++++ |.+...++..+.++|.+++..+..+ +|.+.|.+.++..+
T Consensus 34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~ 113 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML 113 (372)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence 457778889999999999999999999998764 4455567789999999999888765 89999999988888
Q ss_pred HHHHHHh
Q psy16653 100 LLLVLFF 106 (301)
Q Consensus 100 ~~~~~~~ 106 (301)
+..+..+
T Consensus 114 ~~~~~f~ 120 (372)
T PF00854_consen 114 LALIVFL 120 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777655
No 237
>PRK10133 L-fucose transporter; Provisional
Probab=94.00 E-value=0.69 Score=41.66 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=28.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV 255 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~ 255 (301)
..|..|.+.|....++.+....+|..+++.+.+.+.
T Consensus 142 v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777889999999999999988766543
No 238
>KOG2816|consensus
Probab=93.97 E-value=0.73 Score=41.74 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=66.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ 292 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 292 (301)
.++....+.|..+.|+.+..-+.+..++|.+.+...+..|...+|.+-.+..++..++..+..||+...+.++
T Consensus 137 vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 137 VADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 7788888999999999999999999999999999999999988999999999999999999999987666553
No 239
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=93.73 E-value=2.5 Score=38.22 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=42.0
Q ss_pred hhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc--h-------------hHHHHHHHHHHHHHHHHHHh
Q psy16653 49 NMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--T-------------YTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 49 ~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--~-------------Wr~~f~~~~~~~~~~~~~~~ 106 (301)
..+..|.+.-+|-.|..++++.+.+++.+++..+..+ . -+..+.+.+..++++..+.+
T Consensus 170 w~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~ 242 (509)
T COG3202 170 WQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYR 242 (509)
T ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788899999999999999999999998877654 3 34445555555555555544
No 240
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=93.73 E-value=0.8 Score=41.18 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=51.5
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 224 IPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 224 ~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
-|.+ |+.-.+.+..+..+|++++..+.+++.+..+++..|.+.+++..+..+..++..+|.+
T Consensus 118 ~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~ 179 (433)
T PF03092_consen 118 EPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK 179 (433)
T ss_pred CCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence 3555 8888999999999999999999999999999998888888888877777777677633
No 241
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=93.66 E-value=0.18 Score=43.16 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=47.7
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hCcchhHHHHHHHHH-HHHHHhheec
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH----------------FGSAATFWIFTVCCV-VGTVFTFMVV 282 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~ 282 (301)
++++.|++.+++..++.+.+..+|..++|.+.+.+... .+|+.++++.+.+.. +..++.+...
T Consensus 35 v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~ 114 (310)
T TIGR01272 35 VSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPL 114 (310)
T ss_pred HHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 44455667789999999999999999999999987732 356677776655544 4444445556
Q ss_pred ccCCC
Q psy16653 283 PETKG 287 (301)
Q Consensus 283 ~et~~ 287 (301)
||.++
T Consensus 115 p~~~~ 119 (310)
T TIGR01272 115 PELQE 119 (310)
T ss_pred CCCCc
Confidence 66543
No 242
>PRK11462 putative transporter; Provisional
Probab=92.64 E-value=7.7 Score=35.18 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=40.5
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------cchhHHHHHHHHHHHHHHhheecccC
Q psy16653 226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-------SAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
++.|+...++-...+.+++.+++.+..++.+..| |.....+++++.+++..+++...+|.
T Consensus 141 ~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 141 PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 5779999999999999988888777666655543 33444555665555555555545554
No 243
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=92.59 E-value=0.46 Score=41.01 Aligned_cols=94 Identities=7% Similarity=-0.013 Sum_probs=50.0
Q ss_pred hhhccCCeeEEeeechhhhccCcccccchhh-hhhccCCCCCccchh-cHHHHHHHHHH----HHHHHhccc-------h
Q psy16653 20 INFKETRTVSIIVTPAQNMASDERDNITLNM-LQKEGDAPTYLSALG-SFFQMFLTLGI----LYLYCLGLS-------T 86 (301)
Q Consensus 20 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~-~i~e~~~~~~Rg~~~-~~~~~~~~~G~----~~~~~i~~~-------~ 86 (301)
++-..+++..++++|++.|++.+..+.+--. ++.|.-....+.... ..+..+..+++ +.+.+++.. |
T Consensus 114 l~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g 193 (354)
T PF05631_consen 114 LTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFG 193 (354)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCC
Confidence 4556688999999999999998776665443 555543222221111 11111111222 222222222 3
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 87 YTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 87 Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
-..+|.....+..+..++.....+|++
T Consensus 194 ~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 194 PVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred CcchHHHHHHHHHHHHHHHHhcccccC
Confidence 366777776666665555543556653
No 244
>KOG3098|consensus
Probab=92.05 E-value=2.2 Score=38.52 Aligned_cols=79 Identities=6% Similarity=-0.193 Sum_probs=57.4
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
||..+.++...+..-.. ..+-+|-+.+.++-.+.|+|.+..+.....|++|.++++.+.+..++.-.....+.++|.++
T Consensus 79 ~K~~lv~ga~~y~~f~~-gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~ 157 (461)
T KOG3098|consen 79 PKWALVIGATCYAAFPL-GFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGII 157 (461)
T ss_pred HHHHHHHHhHHHHHHHH-HHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHh
Confidence 44444444444433222 22335567788889999999999999999999999999999999998777777666666444
No 245
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=91.99 E-value=7.5 Score=33.57 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=39.6
Q ss_pred cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC--cchhHHHHHHHHHHH
Q psy16653 221 FDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG--SAATFWIFTVCCVVG 274 (301)
Q Consensus 221 ~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~--~~~~~~~~~~~~~~~ 274 (301)
.|.+| +.|+.+.++.+....++..+++.+.+.+.++.+ |+..|.+.+++.+++
T Consensus 113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 34454 468999999999999999999999888877653 777776666554433
No 246
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=91.86 E-value=0.015 Score=44.03 Aligned_cols=61 Identities=5% Similarity=-0.060 Sum_probs=51.3
Q ss_pred hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 22 FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 22 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
.+-++.+.++.+-.+.|++.+...+....|+.+.++++.|++..+++-.....+.++|.++
T Consensus 84 ~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 84 FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999988766666666665543
No 247
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.52 E-value=0.012 Score=51.64 Aligned_cols=67 Identities=15% Similarity=-0.072 Sum_probs=59.6
Q ss_pred hhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 19 EINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 19 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
.+..+.++.+.+++.-+..|+-.|..|+.+...+.|-.|+++|.+.++....+.+.|++++.+++..
T Consensus 327 s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 327 SWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444567888888889999999999999999999999999999999999999999999999988754
No 248
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=91.50 E-value=0.18 Score=44.43 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=63.9
Q ss_pred cCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh----ccc-
Q psy16653 11 LPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL----GLS- 85 (301)
Q Consensus 11 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i----~~~- 85 (301)
..+..+|.++.+++++.+.=+++-.+.+++.|..-..-..+.+ .+++ ...+-|..+...+.++|... ...
T Consensus 96 ~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g 170 (402)
T PF02487_consen 96 VALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLG 170 (402)
T ss_pred HHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhC
Confidence 4456677888888888888788888888888877776666644 4444 34555666555555555443 222
Q ss_pred -hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 86 -TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 86 -~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+-|..++....++++.++..++.+|.++
T Consensus 171 ~s~~~tll~~~~lp~~~~~~~f~~L~~~~ 199 (402)
T PF02487_consen 171 LSPRTTLLIMLVLPAIFLLSYFFLLPSPP 199 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5577777777777666666553555443
No 249
>PF12832 MFS_1_like: MFS_1 like family
Probab=90.74 E-value=3.3 Score=27.14 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=47.5
Q ss_pred hhchHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhH
Q psy16653 185 FSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATF 264 (301)
Q Consensus 185 ~~g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 264 (301)
+.+...+.-|.|.++++.|++ ..-+|+...+..+...+++.+.+.+.|.++.+-..
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~------------------------~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~ 68 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLS------------------------PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI 68 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 344567777888899988888 55678888899999999999999999998876554
Q ss_pred HHHH
Q psy16653 265 WIFT 268 (301)
Q Consensus 265 ~~~~ 268 (301)
...+
T Consensus 69 l~~~ 72 (77)
T PF12832_consen 69 LLGS 72 (77)
T ss_pred HHHH
Confidence 4443
No 250
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=90.16 E-value=0.26 Score=40.61 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=56.5
Q ss_pred CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHH
Q psy16653 26 RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPIL 100 (301)
Q Consensus 26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~ 100 (301)
.++.+.+..++.|.+.+...........+.+| ++||.+.++.-....++..+-.-+... .-+..+++...+.++
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v 173 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVV 173 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 44555556667777666666666666678887 589999999988887777665444322 456666666666666
Q ss_pred HHHHHhcccccch
Q psy16653 101 LLVLFFLVVPETP 113 (301)
Q Consensus 101 ~~~~~~~~~~Esp 113 (301)
.++..+ +++..|
T Consensus 174 ~l~~~~-~vr~~~ 185 (250)
T PF06813_consen 174 CLVAMF-FVRPVP 185 (250)
T ss_pred HHHHhh-heeccC
Confidence 665555 555444
No 251
>KOG2325|consensus
Probab=89.37 E-value=7.7 Score=35.32 Aligned_cols=111 Identities=13% Similarity=0.176 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHhHHH------HHHhc--CCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHH
Q psy16653 170 LRALIISLGLMVFQQFSGVNAVIFYSND------IFKSA--GSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNW 241 (301)
Q Consensus 170 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~--g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~ 241 (301)
+++++..+++..+.+. .|....|.|. ++... |++.+.. ..+... +++.-..+.|.++.+......-
T Consensus 102 k~Pli~s~ii~~~g~l--lY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y---~a~~s~~~dR~rA~a~~~~~~v 175 (488)
T KOG2325|consen 102 KKPLIVSFLIAIIGNL--LYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAY---IADASTVEDRPRAFAATSGGFV 175 (488)
T ss_pred ccCHHHHHHHHHHHHH--HHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHH---HHhccCccchHHHHHHhhhHHH
Confidence 6778888887777665 3433334333 11111 4442221 111111 4444445667777777777666
Q ss_pred HHHHHHHHHHHHHHHh------------hC-cchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 242 IGAFLVTLCFGFLVRH------------FG-SAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 242 ~~~~i~~~~~~~l~~~------------~~-~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
++.++||.+-+.+..- ++ +..+-++..++.++..+..+++.+|..
T Consensus 176 lg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 176 LGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred HHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecc
Confidence 7777776655433321 11 334667777888888888887777744
No 252
>KOG0252|consensus
Probab=89.31 E-value=0.14 Score=45.63 Aligned_cols=108 Identities=11% Similarity=-0.053 Sum_probs=74.9
Q ss_pred cccccccCccccchhhhhccCC-ee---EEeee-chhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 5 TLNQLALPDGGVGYEINFKETR-TV---SIIVT-PAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~-~~---~l~~~-r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
.+-..+..++.+..+..++..+ .. .+++. -+.+-++.=+......++-+|.+|..-||..-++.....-.|.+++
T Consensus 379 ~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg 458 (538)
T KOG0252|consen 379 YIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVG 458 (538)
T ss_pred HHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHH
Confidence 3344556666666666666665 11 11221 1122233445566667788999999999999999988888887777
Q ss_pred HHhcc---------c-hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 80 YCLGL---------S-TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 80 ~~i~~---------~-~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
...-. . +-|..+++.+...++..+..+ ++|||.
T Consensus 459 ~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk 501 (538)
T KOG0252|consen 459 AFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETK 501 (538)
T ss_pred HHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeeccc
Confidence 54421 1 789999999999999888888 899986
No 253
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=87.33 E-value=0.36 Score=42.37 Aligned_cols=86 Identities=9% Similarity=-0.159 Sum_probs=70.7
Q ss_pred hhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc---------------
Q psy16653 21 NFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--------------- 85 (301)
Q Consensus 21 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--------------- 85 (301)
.+...+.+.+..+-++.|++.|...+.+...+-+..++++-|..++.|.....+..-++..++..
T Consensus 295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~ 374 (403)
T PF03209_consen 295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPAL 374 (403)
T ss_pred HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 34455677788888999999999999999999999999999999999998877777776666432
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy16653 86 TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
++-.+|.+.++.-++.+++..
T Consensus 375 aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 375 AYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688899999888877766654
No 254
>PF13347 MFS_2: MFS/sugar transport protein
Probab=86.82 E-value=1.4 Score=39.45 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=49.5
Q ss_pred ccccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------cchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIPF-QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-------SAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p~-~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
.+|+.++ +.|....++-.....+|+.+...+.+.+.+..+ ++....+.+++..++.++.++..||
T Consensus 128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 6677764 679999999999999988877777777665433 5556677777788888787777787
No 255
>PRK09669 putative symporter YagG; Provisional
Probab=85.07 E-value=4.5 Score=36.34 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=41.7
Q ss_pred ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-------GSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
.+|+. +++.|....++......+|+.+++.+..++.... +|+..+.++++++.++.+..++..+|.
T Consensus 134 ~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 134 PGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 34444 3466888888888888888888776655554433 344456666666666655555544543
No 256
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=82.29 E-value=0.97 Score=42.89 Aligned_cols=77 Identities=16% Similarity=0.055 Sum_probs=58.2
Q ss_pred EeeechhhhccCcccccchhhhhhccCCCCC---ccchhcHHHHHHHHHHHHHHHhccc------------hhHHHHHHH
Q psy16653 30 IIVTPAQNMASDERDNITLNMLQKEGDAPTY---LSALGSFFQMFLTLGILYLYCLGLS------------TYTVIAIGC 94 (301)
Q Consensus 30 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~~~~i~~~------------~Wr~~f~~~ 94 (301)
.+++-.+..+|.|+.-|...+...|-+++++ |-....++..+.++|.+++..+..+ +|...|.+.
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 4466677888999999999999999887654 4455566677888888877655321 599999999
Q ss_pred HHHHHHHHHHHh
Q psy16653 95 LAVPILLLVLFF 106 (301)
Q Consensus 95 ~~~~~~~~~~~~ 106 (301)
++..++.+++..
T Consensus 168 ~i~m~ia~lvf~ 179 (654)
T TIGR00926 168 AILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHH
Confidence 888887766654
No 257
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=81.84 E-value=2.9 Score=36.67 Aligned_cols=56 Identities=9% Similarity=0.006 Sum_probs=46.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhhee
Q psy16653 226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMV 281 (301)
Q Consensus 226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (301)
++.|.....+.+...++|+.+++...+++.+++||...|.+.++..+++.+..+.-
T Consensus 67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 34578889999999999999999999999999999888888877777777666553
No 258
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=81.69 E-value=12 Score=33.18 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=50.8
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------hCcchhHHHHHHHHHHHHHHh-h
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRH-------------------FGSAATFWIFTVCCVVGTVFT-F 279 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~-------------------~~~~~~~~~~~~~~~~~~~~~-~ 279 (301)
++.+.|++..+.-.++....+.+|+.++|.+.+++..+ ..++.++...+....+..+.. .
T Consensus 129 v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 129 VTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred HHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 77778887778889999999999999999999887762 125567777766655544444 3
Q ss_pred eecccCCCCCHH
Q psy16653 280 MVVPETKGKTLA 291 (301)
Q Consensus 280 ~~~~et~~~~~~ 291 (301)
...|+.+..+.+
T Consensus 209 ~k~p~~~~~~~~ 220 (422)
T COG0738 209 SKLPDLQVAAPS 220 (422)
T ss_pred ccCCcCCccccc
Confidence 444665544433
No 259
>PRK10429 melibiose:sodium symporter; Provisional
Probab=77.87 E-value=55 Score=29.75 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=37.6
Q ss_pred ccccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 220 MFDCI-PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-------GSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 220 ~~e~~-p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
.+|+. .++.|....++-.....+++.+.+.+..++.+.. ++.....+++++..++....++..||.
T Consensus 131 ~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~ 204 (473)
T PRK10429 131 VPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV 204 (473)
T ss_pred hHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 34444 3677888888877777777666655544443322 233344455555555555555545654
No 260
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=77.05 E-value=36 Score=29.87 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=55.1
Q ss_pred chHHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CcchhHH
Q psy16653 187 GVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-GSAATFW 265 (301)
Q Consensus 187 g~~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-~~~~~~~ 265 (301)
+....+..+|.+.|.- + |.+ -+..+|++.....+++.+++.+..++.++. +|+....
T Consensus 112 gIav~nVLLPslIK~~-F--------------------pk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 112 GIAVINVLLPSLIKRD-F--------------------PKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred hHHHHHHhhhHHHHhh-c--------------------ccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 3455666677777664 2 222 377899999999999999999999999887 6999999
Q ss_pred HHHHHHHHHHHHhh
Q psy16653 266 IFTVCCVVGTVFTF 279 (301)
Q Consensus 266 ~~~~~~~~~~~~~~ 279 (301)
+++..++++.+..+
T Consensus 170 ~WAl~allAl~~Wl 183 (395)
T COG2807 170 FWALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999888876543
No 261
>COG3462 Predicted membrane protein [Function unknown]
Probab=73.37 E-value=12 Score=26.13 Aligned_cols=61 Identities=18% Similarity=0.069 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhc---CChHHHHHHHHHhcCCCCChHHHHHHH
Q psy16653 86 TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKS---GNNKKAEVSLRFYRGSRYDVPLELAAI 146 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 146 (301)
||....-+.+++.++++++..+++.+--++-..+ .+.+.|+++++.-..+..-.++|+++.
T Consensus 48 Gm~lImpI~~~vvli~lvvfm~~~~g~~r~~~~~d~~e~~sRA~eIlkER~AkGEItEEEY~r~ 111 (117)
T COG3462 48 GMWLIMPIFWAVVLIFLVVFMFYILGAVRRGSDDDDAERGSRAEEILKERYAKGEITEEEYRRI 111 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcccccccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4444444555555555555443444433332211 223556666665554443445555443
No 262
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=71.40 E-value=6.6 Score=28.94 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=36.0
Q ss_pred HhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccC
Q psy16653 213 IQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285 (301)
Q Consensus 213 l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et 285 (301)
+.+|+..+.|++|+..|....+..+...+...-...+ .|. ...++.....++++-+.+-+..|+
T Consensus 53 l~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~--------~g~-a~Wi~tTSallLgvPl~l~ie~Eq 116 (137)
T PF04281_consen 53 LLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSF--------SGK-ALWIVTTSALLLGVPLALEIEREQ 116 (137)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHh--------cch-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666999999999998777766554433222221 121 333444455555555554434343
No 263
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=71.15 E-value=8.8 Score=34.78 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=42.9
Q ss_pred ccccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-------cchhHHHHHHHHHHHHHHhheeccc
Q psy16653 220 MFDCIP-FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-------SAATFWIFTVCCVVGTVFTFMVVPE 284 (301)
Q Consensus 220 ~~e~~p-~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e 284 (301)
.+|+-+ ++.|.+-.++=.....+++.+...+.+++.+.++ ++....+++++..+...++++-.+|
T Consensus 137 ~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~E 209 (467)
T COG2211 137 GPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKE 209 (467)
T ss_pred chhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444443 4679999999999999999999988888887554 3334444444444444455544444
No 264
>KOG3880|consensus
Probab=69.34 E-value=0.75 Score=38.91 Aligned_cols=72 Identities=8% Similarity=-0.126 Sum_probs=62.3
Q ss_pred cccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 14 GGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 14 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
+.+.-.+-.+.++++...+.-+..|+-.|..|+....=+.+-.+|++|-.+++....+.++|+.++..++..
T Consensus 329 ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp 400 (409)
T KOG3880|consen 329 FFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP 400 (409)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence 344455566778888888888899999999999999999999999999999999999999999999988765
No 265
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=69.15 E-value=20 Score=21.98 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 68 FQMFLTLGILYLYCLGLS-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 68 ~~~~~~~G~~~~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
.-++..+|.+++++.+.. +++....+..+.+++..++.. .+|+++
T Consensus 7 ~fWs~il~~vvgyI~ssL~~~~~n~~~~~Ii~vi~~i~~~~~~~-~i~~~~ 56 (57)
T PF11151_consen 7 FFWSFILGEVVGYIGSSLTGVTYNFTTAAIIAVIFGIIVANIIA-VIPKKS 56 (57)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH-HcCCCC
Confidence 345556666666666544 788888888888888777776 666543
No 266
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=68.34 E-value=22 Score=34.00 Aligned_cols=52 Identities=8% Similarity=0.048 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-------CcchhHHHHHHHHHHHHHHhh
Q psy16653 228 VKGIATGIAVAVNWIGAFLVTLCFGFLVRHF-------GSAATFWIFTVCCVVGTVFTF 279 (301)
Q Consensus 228 ~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~ 279 (301)
.|.....+++...++|+.+++.+.+++.+.. +|...|.+.+++.+++.++..
T Consensus 121 ~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 121 LRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999987554 466667776666666665543
No 267
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=59.91 E-value=14 Score=27.28 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=37.4
Q ss_pred HhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCC
Q psy16653 213 IQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETK 286 (301)
Q Consensus 213 l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~ 286 (301)
+.+|+..+.|++|+..|....+......+..--... . +-....++.....+++.-+.+-+..|.+
T Consensus 51 l~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~s--------f-sGkalWivsTSaLLLgVPlala~~~Eqq 115 (145)
T TIGR00986 51 FTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTLS--------F-AGRAAWAVSTSALLLGVPFAISFAEEQQ 115 (145)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH--------h-cCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666699999999999877766655443322111 1 2223344455555556655555555433
No 268
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=57.87 E-value=50 Score=23.84 Aligned_cols=30 Identities=13% Similarity=0.423 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHH-----HHHHHHHhcccccchhH
Q psy16653 86 TYTVIAIGCLAVP-----ILLLVLFFLVVPETPIY 115 (301)
Q Consensus 86 ~Wr~~f~~~~~~~-----~~~~~~~~~~~~Esp~~ 115 (301)
-.|.+|.+..+++ +++-++.++++|+.|..
T Consensus 30 ~VRl~~vl~~~~~~~~~~ll~Y~i~w~~lp~~p~~ 64 (121)
T TIGR02978 30 LVRILVVSALLFGGGFFVLVAYIALWLLLDKKPIN 64 (121)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCccc
Confidence 4577766654443 22234445478887743
No 269
>COG1288 Predicted membrane protein [Function unknown]
Probab=57.42 E-value=72 Score=28.70 Aligned_cols=21 Identities=5% Similarity=0.281 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy16653 86 TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+||...++......+..+.++
T Consensus 217 ~~Riv~~v~~~~~~i~y~~~Y 237 (481)
T COG1288 217 GLRIVVWVVFTLISIIYVYWY 237 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 899999998877777666655
No 270
>KOG4686|consensus
Probab=57.41 E-value=12 Score=31.82 Aligned_cols=74 Identities=11% Similarity=-0.071 Sum_probs=48.2
Q ss_pred echhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc--------hhHHHHHH-HHHHHHHHHH
Q psy16653 33 TPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS--------TYTVIAIG-CLAVPILLLV 103 (301)
Q Consensus 33 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~--------~Wr~~f~~-~~~~~~~~~~ 103 (301)
+-.+.|.+.+..-....-.+.-..|+++-|.+.++.|.-.++|-.+.+++++. .|--+|++ .+..++....
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svg 437 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVG 437 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 34445554433333344567778899999999999999999999998888765 35444444 4445554444
Q ss_pred HHh
Q psy16653 104 LFF 106 (301)
Q Consensus 104 ~~~ 106 (301)
+.+
T Consensus 438 il~ 440 (459)
T KOG4686|consen 438 ILF 440 (459)
T ss_pred HHh
Confidence 433
No 271
>COG1422 Predicted membrane protein [Function unknown]
Probab=57.34 E-value=95 Score=24.55 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=11.0
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q psy16653 74 LGILYLYCLGLSTYTVIAIGCLAVPI 99 (301)
Q Consensus 74 ~G~~~~~~i~~~~Wr~~f~~~~~~~~ 99 (301)
+..+++|.++..+-.+..++.+++..
T Consensus 33 ln~~f~P~i~~~~p~lvilV~avi~g 58 (201)
T COG1422 33 LNVVFGPLLSPLPPHLVILVAAVITG 58 (201)
T ss_pred HHHHHhhhccccccHHHHHHHHHHHH
Confidence 33344444444344444444444433
No 272
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.27 E-value=51 Score=23.15 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=29.2
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653 226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGS 260 (301)
Q Consensus 226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 260 (301)
++.++.+.++-...-.+++++....++|+.+++--
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34578888888889999999999999999998743
No 273
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=55.53 E-value=25 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 86 TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
+|+.++++.-.++++++.+.+.+.||+.
T Consensus 58 ~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 58 GWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999987777766666555889875
No 274
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=54.67 E-value=4 Score=34.85 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=3.9
Q ss_pred ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 23 KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 23 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
..++-+..++.-++.|+..|-.....+.+..+..++++|..+..+...+..+|..+|..++
T Consensus 244 ~~~~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 244 LFNSDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -----------------------HHHH----------------------------------
T ss_pred cccchHHHHHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888999999999999999999999999999999998888888888877654
No 275
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=54.12 E-value=16 Score=26.23 Aligned_cols=19 Identities=5% Similarity=0.233 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcccccchhH
Q psy16653 97 VPILLLVLFFLVVPETPIY 115 (301)
Q Consensus 97 ~~~~~~~~~~~~~~Esp~~ 115 (301)
+++++-++.++.+|+.|..
T Consensus 51 ~~~~~Yi~l~~~lp~~P~~ 69 (118)
T PRK10697 51 FTLVAYIILSFALDPMPDN 69 (118)
T ss_pred HHHHHHHHHHHhccCCccc
Confidence 3445555556578887743
No 276
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=53.19 E-value=34 Score=22.33 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 66 SFFQMFLTLGILYLYCLGLS--TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 66 ~~~~~~~~~G~~~~~~i~~~--~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
-+.+....++.+++.++|.. +-+..+++.++-.++.+++ .+|+=|
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv---~vP~Wp 57 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLV---VVPPWP 57 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---eeCCcH
Confidence 35666777777777777777 7777777766665555544 456644
No 277
>KOG0637|consensus
Probab=52.86 E-value=40 Score=30.55 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=36.2
Q ss_pred ccchhhhhhccCCCCCccc-hhcHHHHHHHHHHHHHHHhccc-hhHH
Q psy16653 45 NITLNMLQKEGDAPTYLSA-LGSFFQMFLTLGILYLYCLGLS-TYTV 89 (301)
Q Consensus 45 ~~~~~~~i~e~~~~~~Rg~-~~~~~~~~~~~G~~~~~~i~~~-~Wr~ 89 (301)
-...-++++|.+-++.|-+ +.+.+..+..+|..+++..+.+ +|+-
T Consensus 160 qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~ 206 (498)
T KOG0637|consen 160 QGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYLGLYK 206 (498)
T ss_pred hhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecccccCceE
Confidence 3445678889887666666 9999999999999999999976 6554
No 278
>KOG2563|consensus
Probab=51.25 E-value=17 Score=32.80 Aligned_cols=39 Identities=26% Similarity=0.111 Sum_probs=31.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF 258 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 258 (301)
..-.||++.|+++..+....+-+|..++..+-+.+..+.
T Consensus 165 A~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 165 AAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 344578899999999999999899888887777666543
No 279
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=49.54 E-value=51 Score=30.16 Aligned_cols=37 Identities=0% Similarity=-0.123 Sum_probs=31.2
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR 256 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~ 256 (301)
+.|++..++-.+-.++....++++.++++.+..++.+
T Consensus 154 andi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 154 ANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777888999999999999999998888763
No 280
>PRK09609 hypothetical protein; Provisional
Probab=48.75 E-value=1.7e+02 Score=25.00 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhc
Q psy16653 68 FQMFLTLGILYLYCLG 83 (301)
Q Consensus 68 ~~~~~~~G~~~~~~i~ 83 (301)
.-.+..+|+..|.++|
T Consensus 48 iI~G~LFGPv~G~ivG 63 (312)
T PRK09609 48 KITGFIFGPIVGFFTG 63 (312)
T ss_pred HHHHHHhchHHHHHHH
Confidence 3445555555555554
No 281
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=42.93 E-value=45 Score=17.39 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccchh
Q psy16653 90 IAIGCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 90 ~f~~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
.|++.+.++++...+ +.+|+|+
T Consensus 7 tfll~~tlgiiFFAI---fFRepPr 28 (31)
T PRK11875 7 ILILTLALVTLFFAI---AFRDPPK 28 (31)
T ss_pred HHHHHHHHHHHHHhh---hccCCCC
Confidence 344444444443333 6688886
No 282
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=39.89 E-value=57 Score=24.12 Aligned_cols=37 Identities=11% Similarity=-0.047 Sum_probs=25.3
Q ss_pred hhhccCCCCCccchhcHHHHHHHHHHHHHHHhccchh
Q psy16653 51 LQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTY 87 (301)
Q Consensus 51 ~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~~W 87 (301)
-+.|++||+.|....+.+........-.....+..-|
T Consensus 59 aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~W 95 (137)
T PF04281_consen 59 ALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALW 95 (137)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 3589999999999988887666555544444333234
No 283
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=38.46 E-value=61 Score=24.09 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=26.0
Q ss_pred hhhccCCCCCccchhcHHHHHHHHHHHHHHHhccchhH
Q psy16653 51 LQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLSTYT 88 (301)
Q Consensus 51 ~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~~Wr 88 (301)
-+.|++||..|......+........-....-+..-|-
T Consensus 57 ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~sfsGkalWi 94 (145)
T TIGR00986 57 ALKDIVPPTTRGWIYHKYSTTTNFVKSTLSFAGRAAWA 94 (145)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 46799999999998888877666555444444433453
No 284
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=38.30 E-value=2.8e+02 Score=24.38 Aligned_cols=48 Identities=25% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhC--cchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653 241 WIGAFLVTLCFGFLVRHFG--SAATFWIFTVCCVVGTVFTFMVVPETKGK 288 (301)
Q Consensus 241 ~~~~~i~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 288 (301)
.+.++.+..+...+.+..+ ...+|..-..+..++.+++....+|+.+.
T Consensus 173 ~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 173 GVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 3344445555555556554 46788888888888888888878887654
No 285
>COG3817 Predicted membrane protein [Function unknown]
Probab=38.24 E-value=88 Score=25.78 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=45.6
Q ss_pred ccccCCcchhhhHHHHHH------HHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCCCCHHH
Q psy16653 220 MFDCIPFQVKGIATGIAV------AVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQ 292 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~------~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~ 292 (301)
..|.-|.+.+-.+.-+-+ ...-+-..++..+++.+.. ++ -+.++.-.++.++++.++.+..-+++.++.++|
T Consensus 78 ~~~~~~e~re~~A~rlgnrlfiPal~ip~~tlig~~lf~~~s~-~~pknatl~al~i~~i~a~vla~~mt~~~p~~~~~E 156 (313)
T COG3817 78 LPELSPEEREKSANRLGNRLFIPALLIPVLTLIGSLLFPDLSF-FDPKNATLMALGIAAIVATVLACVMTKQTPKAAVQE 156 (313)
T ss_pred CCCCCHHHHHHHHHHhcCEeehHHHHHHHHHHHHHHHhccccc-cCCcchhHHHHHHHHHHHHHHHHHHhccChhhHHHH
Confidence 555555555444433322 1122233344444443332 22 245677788888888888888788888888887
Q ss_pred HHHHhcc
Q psy16653 293 IQRELGG 299 (301)
Q Consensus 293 ~~~~~~~ 299 (301)
-++..|+
T Consensus 157 ~~rl~d~ 163 (313)
T COG3817 157 ARRLMDQ 163 (313)
T ss_pred HHHHHHH
Confidence 7665543
No 286
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=37.43 E-value=38 Score=30.61 Aligned_cols=83 Identities=13% Similarity=-0.057 Sum_probs=45.1
Q ss_pred CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc--------c---c--hhHHHHH
Q psy16653 26 RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG--------L---S--TYTVIAI 92 (301)
Q Consensus 26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~--------~---~--~Wr~~f~ 92 (301)
.++..++.-++.|++.|..-.....+.+.. |+++ +..+..+..++.+++.++. . . +=...|.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~f-p~~~----~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~ 179 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGVF-PSTY----SSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG 179 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcccC-CHHH----HHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence 344555666677888777777777777744 5443 3334444444444433321 1 1 2233455
Q ss_pred HHHHHHHHHHHHHhcccccchh
Q psy16653 93 GCLAVPILLLVLFFLVVPETPI 114 (301)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~Esp~ 114 (301)
+..+..+++++... .++.+|.
T Consensus 180 ~a~~v~l~~i~~~~-~l~k~~~ 200 (437)
T TIGR00939 180 TPCVVQLICIVCYL-LLPKLPF 200 (437)
T ss_pred HHHHHHHHHHHHHH-HHhcCHH
Confidence 55555555555555 7777773
No 287
>CHL00031 psbT photosystem II protein T
Probab=36.92 E-value=58 Score=17.28 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhH
Q psy16653 90 IAIGCLAVPILLLVLFFLVVPETPIY 115 (301)
Q Consensus 90 ~f~~~~~~~~~~~~~~~~~~~Esp~~ 115 (301)
.|++.+.++++...+ +.+|+|+.
T Consensus 7 tfll~~tlgilFFAI---~FRePPri 29 (33)
T CHL00031 7 TFLLVSTLGIIFFAI---FFREPPKV 29 (33)
T ss_pred HHHHHHHHHHHHHhh---eecCCCCC
Confidence 344444444433332 67899864
No 288
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=35.79 E-value=19 Score=32.55 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=50.5
Q ss_pred CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhc
Q psy16653 25 TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLG 83 (301)
Q Consensus 25 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~ 83 (301)
++-+..++.-++.|+..|-.....+.+..+..++++|..+..+...+..+|...|..++
T Consensus 370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788999999999999999999999999999999999999999988887654
No 289
>KOG3574|consensus
Probab=34.81 E-value=3.5e+02 Score=24.46 Aligned_cols=39 Identities=8% Similarity=-0.031 Sum_probs=30.0
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF 258 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 258 (301)
.+.+.++..-||.+.+.|+..++|+---..+..++.|..
T Consensus 394 ~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l 432 (510)
T KOG3574|consen 394 HAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL 432 (510)
T ss_pred HhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence 788888999999999999998888765555555666543
No 290
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=34.36 E-value=69 Score=19.87 Aligned_cols=28 Identities=25% Similarity=0.499 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhcccccch
Q psy16653 86 TYTVIAIGCLAVP---ILLLVLFFLVVPETP 113 (301)
Q Consensus 86 ~Wr~~f~~~~~~~---~~~~~~~~~~~~Esp 113 (301)
-+|..|.+..+++ +++-++.++.+|+.|
T Consensus 30 ~vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 30 LVRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 5688777766643 344444444778765
No 291
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.06 E-value=1.5e+02 Score=20.62 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHH
Q psy16653 67 FFQMFLTLGILYLYCLGLS---------TYTVIAIGCLAVPILLLVLF 105 (301)
Q Consensus 67 ~~~~~~~~G~~~~~~i~~~---------~Wr~~f~~~~~~~~~~~~~~ 105 (301)
.......+..+++..+|.+ .|-..|++.|+...+.-+..
T Consensus 47 ~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 47 LIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544 47777777666665555433
No 292
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=33.18 E-value=1.9e+02 Score=24.03 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=27.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV 272 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 272 (301)
+.+-+|++.|-++.-+......+.-++......++.+..++ .+.+++....
T Consensus 41 ~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~~~--l~~~fg~~L~ 91 (254)
T COG0861 41 LASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLTQP--LLYIFGLYLL 91 (254)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHH
Confidence 55566777777776555555544545555555566655333 3444444333
No 293
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=32.99 E-value=14 Score=31.45 Aligned_cols=73 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHHHHHH
Q psy16653 36 QNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS----------TYTVIAIGCLAVPILLLVLF 105 (301)
Q Consensus 36 l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~----------~Wr~~f~~~~~~~~~~~~~~ 105 (301)
+.|.+.|..-.....+.+. +|+++ ...+..+.+++.++..++... +=...|.+..+..+++.+..
T Consensus 6 ~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l~ii~~~~~~~~~~~a~~yF~~a~~i~i~~~~~~ 80 (309)
T PF01733_consen 6 LIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLLRIITKASGSDVKTSAFIYFIIAVLIVILCIILY 80 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 3455555555555555554 45544 333444444444444443322 22233434444444444444
Q ss_pred hcccccchh
Q psy16653 106 FLVVPETPI 114 (301)
Q Consensus 106 ~~~~~Esp~ 114 (301)
. .++.+|.
T Consensus 81 ~-~l~~~~~ 88 (309)
T PF01733_consen 81 F-ILPRSPF 88 (309)
T ss_dssp ---------
T ss_pred H-HhccChH
Confidence 4 6766664
No 294
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=32.91 E-value=52 Score=23.03 Aligned_cols=36 Identities=17% Similarity=-0.009 Sum_probs=23.3
Q ss_pred HHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCC
Q psy16653 254 LVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKT 289 (301)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~ 289 (301)
..+..+|..++++...++++.+.+.+.+.|++.-++
T Consensus 53 ~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~~ 88 (105)
T PF10183_consen 53 KRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQT 88 (105)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 345567777777666666666666666679877543
No 295
>PRK03612 spermidine synthase; Provisional
Probab=31.35 E-value=99 Score=28.73 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-hhCcchhHHHHHHHHHHHHHH
Q psy16653 230 GIATGIAVAVNWIGAFLVTLCFGFLVR-HFGSAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 230 ~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 277 (301)
+...|-.+..+.+|+++|+.+++++.- .+|......+.+.+.++++++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 456778888888999999988886664 677655655666555544433
No 296
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=28.89 E-value=1.8e+02 Score=19.44 Aligned_cols=48 Identities=19% Similarity=0.110 Sum_probs=34.4
Q ss_pred HHHHHhHHHHHHhcCCCCCcchhhHhhhcccccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Q psy16653 189 NAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGS 260 (301)
Q Consensus 189 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~v~~~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 260 (301)
+.+.-.+|.+.++.+++ ....|+....+.+|..+|......+.++.+.
T Consensus 9 FayTplLP~M~~~~~ls------------------------~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~ 56 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLS------------------------LSQAGWLASANYLGYLVGALLASRLPRHSRP 56 (85)
T ss_pred HHHHhHhHHHHHhcCCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 34555688888888777 4456777778888888888888777765443
No 297
>KOG0055|consensus
Probab=28.01 E-value=7.2e+02 Score=26.06 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy16653 86 TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
+||......+..+++++....
T Consensus 807 ~W~lalv~la~~Pll~~~~~~ 827 (1228)
T KOG0055|consen 807 GWRLALVVLATFPLLILSGYL 827 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888887766554
No 298
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=27.14 E-value=1.2e+02 Score=18.63 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHHHHHHhheec
Q psy16653 259 GSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
||+...++.+++.+++..+.-++.
T Consensus 4 g~r~~~~~ggfVg~iG~a~Ypi~~ 27 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALYPIYF 27 (58)
T ss_pred cccchhhHHHHHHHHHHHHhhhhc
Confidence 566666777777777766554433
No 299
>PRK09458 pspB phage shock protein B; Provisional
Probab=26.80 E-value=1e+02 Score=20.03 Aligned_cols=8 Identities=0% Similarity=-0.342 Sum_probs=3.1
Q ss_pred ccccchhH
Q psy16653 108 VVPETPIY 115 (301)
Q Consensus 108 ~~~Esp~~ 115 (301)
++.-..+|
T Consensus 23 ~LHY~sk~ 30 (75)
T PRK09458 23 WLHYRSKR 30 (75)
T ss_pred HHhhcccc
Confidence 44433333
No 300
>KOG2513|consensus
Probab=26.30 E-value=3.7e+02 Score=25.50 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCCccchhcHHHHHHHHHHHHHHHhc----cc------hhHHHHHHHHHHHHH---------HHHHHhcccccchhHHH
Q psy16653 57 APTYLSALGSFFQMFLTLGILYLYCLG----LS------TYTVIAIGCLAVPIL---------LLVLFFLVVPETPIYLM 117 (301)
Q Consensus 57 ~~~~Rg~~~~~~~~~~~~G~~~~~~i~----~~------~Wr~~f~~~~~~~~~---------~~~~~~~~~~Esp~~l~ 117 (301)
|=.+|....|.|+....+=.+++-+.. +. -|.+.-...+++.++ -.++.. .+||+|+|..
T Consensus 523 Pfp~r~~~IG~Wq~~l~~lSvls~vtncaLi~~~~~~~~~~~~~s~~~~il~~V~~EH~~l~Lkflis~-vipe~p~wva 601 (647)
T KOG2513|consen 523 PFPRRVANIGAWQNALELLSVLSCVTNCALIGMYPQVNKLWPLLSPENAILIIVILEHVLLLLKFLISS-VIPESPRWVA 601 (647)
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHhHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHH
Confidence 444566667776655444444443332 11 354323333333222 122333 6899999985
Q ss_pred h
Q psy16653 118 K 118 (301)
Q Consensus 118 ~ 118 (301)
.
T Consensus 602 ~ 602 (647)
T KOG2513|consen 602 A 602 (647)
T ss_pred H
Confidence 3
No 301
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=24.83 E-value=1.1e+02 Score=15.72 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.0
Q ss_pred ccccchh
Q psy16653 108 VVPETPI 114 (301)
Q Consensus 108 ~~~Esp~ 114 (301)
+.+|+||
T Consensus 22 ~FRePPr 28 (29)
T PF01405_consen 22 FFREPPR 28 (29)
T ss_dssp HSS----
T ss_pred hccCCCC
Confidence 5678885
No 302
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=24.45 E-value=1.8e+02 Score=27.01 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=25.4
Q ss_pred hhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 52 QKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 52 i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
.-.+..+++++.+......+.+.|..+++.+
T Consensus 143 ALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tv 173 (544)
T PF13000_consen 143 ALTMLSPENVGYASTCQTVGQTAGYFLSFTV 173 (544)
T ss_pred hhhhcChhhcchHHHHHHhHhhhhHHHHHHH
Confidence 3345578889999999999999999998766
No 303
>KOG2881|consensus
Probab=24.12 E-value=3.8e+02 Score=22.43 Aligned_cols=22 Identities=9% Similarity=0.008 Sum_probs=9.7
Q ss_pred HHHhhCcchhHHHHHHHHHHHH
Q psy16653 254 LVRHFGSAATFWIFTVCCVVGT 275 (301)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~ 275 (301)
+.+.+..+.+.++.+.++++-.
T Consensus 263 lAskIS~rtVt~~ggi~Fi~Fg 284 (294)
T KOG2881|consen 263 LASKISVRTVTLIGGILFIIFG 284 (294)
T ss_pred HhhhheeEEEEEecchhHHHHH
Confidence 3344555444444444444333
No 304
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.81 E-value=4.7e+02 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=23.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy16653 226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG 259 (301)
Q Consensus 226 ~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 259 (301)
++.||.-.........+.+.++.+..+.+...++
T Consensus 292 ~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~ 325 (521)
T PF02990_consen 292 PNNRGSLLTAAIILYALTSFIAGYVSARLYKSFG 325 (521)
T ss_pred ccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 3446766667777777777777777777766554
No 305
>KOG3098|consensus
Probab=23.05 E-value=78 Score=28.83 Aligned_cols=59 Identities=8% Similarity=-0.051 Sum_probs=44.7
Q ss_pred CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc
Q psy16653 26 RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS 85 (301)
Q Consensus 26 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~ 85 (301)
++...++.-++.|++....-.....++.+.. ++.|..+.++...-..++..++......
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4445555668999999888999999999999 7788888887777777777665555444
No 306
>PF08997 UCR_6-4kD: Ubiquinol-cytochrome C reductase complex, 6.4kD protein; InterPro: IPR015089 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is an essential component of the mitochondrial cellular respiratory chain. This family represents the 6.4 kDa protein, which may be closely linked to the iron-sulphur protein in the complex and function as an iron-sulphur protein-binding factor []. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0009055 electron carrier activity; PDB: 1NTM_K 1SQV_K 1SQB_K 1NU1_K 1SQQ_K 1BE3_K 1BGY_W 2YBB_k 2FYU_K 1L0N_K ....
Probab=22.65 E-value=64 Score=19.65 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=23.0
Q ss_pred hccCCCCCccchhcHHHHHHHHHHHHHHHhccc-hhHHH
Q psy16653 53 KEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-TYTVI 90 (301)
Q Consensus 53 ~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-~Wr~~ 90 (301)
+.+..+++...+-.+.......|..-+..+-+. .||.+
T Consensus 3 ~r~~G~k~~~lak~w~ps~~~~G~~~~l~lvy~TDWklI 41 (56)
T PF08997_consen 3 SRLIGPKYIELAKNWIPSAAAWGAAGGLALVYFTDWKLI 41 (56)
T ss_dssp GGG-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhcHHHHHHHHHhchhHHHHhhhhhhheeeecchHhh
Confidence 334455666666666677777776665555555 77764
No 307
>KOG4473|consensus
Probab=21.83 E-value=2.9e+02 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=26.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchh
Q psy16653 225 PFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAAT 263 (301)
Q Consensus 225 p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 263 (301)
|++.|.+-.++.....+.-+.+.|++...+..++..+..
T Consensus 158 p~~~~p~qaA~asa~afslGg~vPLl~~~fi~~~~~~~v 196 (247)
T KOG4473|consen 158 PAENRPLQAAAASALAFSLGGIVPLLPAAFVKDYKVRIV 196 (247)
T ss_pred CCCCchHHHHHHHHHHHHhccHHhhhHHHhhhhhhhhhh
Confidence 556667667777777777777778777667777666543
No 308
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=21.06 E-value=2.9e+02 Score=24.48 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHH--HHHHHhheecccCCCCCHH
Q psy16653 237 VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCV--VGTVFTFMVVPETKGKTLA 291 (301)
Q Consensus 237 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~et~~~~~~ 291 (301)
..++..+++-++.+.+|.. .|....+.+-+.+.- -+.++.-+..|+|.+.+..
T Consensus 169 v~~~gmasVsgsilg~Y~~--mgvp~~yllaAs~m~~p~gli~Akii~P~t~~~~~~ 223 (404)
T COG1972 169 VMASGMASVSGSILGGYAS--MGVPPEYLLAASFMNAPGGLLFAKLINPYTEDEQDA 223 (404)
T ss_pred HHHhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhcchHHHHHHhcCCCCCCccch
Confidence 3445556666676677654 444445555554433 3445556778987766533
No 309
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=20.80 E-value=5.4e+02 Score=22.05 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=30.9
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHH
Q psy16653 223 CIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVF 277 (301)
Q Consensus 223 ~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 277 (301)
-.|++.|-++.-+.....-+.-.+...+..++.+.+.| .+.++++..+-.++-
T Consensus 91 ~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~w--i~~ifG~fLi~~a~k 143 (302)
T TIGR03718 91 AVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFHW--VLYIFGAFLLYTGIK 143 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHH
Confidence 45777777776666555555555555555666655444 566666555544433
No 310
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=20.09 E-value=3.7e+02 Score=19.85 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16653 233 TGIAVAVNWIGAFLVTLCFGFLV 255 (301)
Q Consensus 233 ~~~~~~~~~~~~~i~~~~~~~l~ 255 (301)
--+...++.+.++++.++++|..
T Consensus 77 ~qls~v~Nilvsv~~~~~~~~~~ 99 (142)
T PF11712_consen 77 RQLSTVFNILVSVFAVFFAGWYW 99 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555533
No 311
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.04 E-value=5.6e+02 Score=21.91 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHHhcc
Q psy16653 262 ATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRELGG 299 (301)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~~~~ 299 (301)
....-+++-++++.++.+...+++.....+|-++..|+
T Consensus 122 ~tlv~lgig~i~Ali~a~~itk~~~~~~~~e~~Rll~~ 159 (308)
T PF06166_consen 122 GTLVGLGIGAIVALIVALIITKPKPKQPLKESRRLLDQ 159 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHH
Confidence 45666777788888888877788877888887776654
No 312
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=20.04 E-value=1.5e+02 Score=26.74 Aligned_cols=56 Identities=7% Similarity=0.131 Sum_probs=41.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 227 QVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 227 ~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
......++...-+--+..+++|.+.+.+.+..+......+.++..+++.+.=++++
T Consensus 145 ~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l 200 (432)
T PF06963_consen 145 GALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLL 200 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666778999999999999888877777777777777776655443
No 313
>KOG3626|consensus
Probab=20.03 E-value=3.8e+02 Score=26.21 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------C-cchhHHHHHHHHHHHHHHhheec
Q psy16653 222 DCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHF------------------G-SAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 222 e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~------------------~-~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
|...++.-+...|+.+....+|-++|-.+.+.+.+.+ | |..-|++.+++.++..+-.++ .
T Consensus 264 Dnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-f 342 (735)
T KOG3626|consen 264 DNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-F 342 (735)
T ss_pred ccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-C
Confidence 4444555567788888888888777777766665421 1 223466777777777766655 5
Q ss_pred ccCCCCC
Q psy16653 283 PETKGKT 289 (301)
Q Consensus 283 ~et~~~~ 289 (301)
|++.+++
T Consensus 343 Pk~lp~~ 349 (735)
T KOG3626|consen 343 PKELPKS 349 (735)
T ss_pred cccCccc
Confidence 6555443
Done!