Query psy16653
Match_columns 301
No_of_seqs 153 out of 1755
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 18:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.5E-37 5E-42 280.1 14.6 290 4-300 85-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 2.7E-24 9.1E-29 191.2 -0.2 261 4-282 92-434 (451)
3 3o7q_A L-fucose-proton symport 99.8 1.3E-19 4.5E-24 160.4 10.8 237 4-278 91-429 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.7 1.1E-17 3.8E-22 150.3 6.1 103 4-106 85-194 (491)
5 2gfp_A EMRD, multidrug resista 99.7 4.5E-19 1.6E-23 153.9 -7.0 113 3-115 64-181 (375)
6 2xut_A Proton/peptide symporte 99.6 1.3E-15 4.4E-20 138.0 7.9 104 3-106 84-196 (524)
7 2cfq_A Lactose permease; trans 99.4 7.4E-15 2.5E-19 129.4 -5.9 71 220-290 337-408 (417)
8 2gfp_A EMRD, multidrug resista 97.9 9.7E-06 3.3E-10 69.6 5.1 69 220-288 113-181 (375)
9 1pw4_A Glycerol-3-phosphate tr 97.8 0.0002 6.8E-09 62.8 12.0 68 220-287 144-212 (451)
10 3o7q_A L-fucose-proton symport 97.8 7.5E-05 2.6E-09 65.3 9.2 68 220-287 142-236 (438)
11 4aps_A DI-OR tripeptide H+ sym 97.7 6E-06 2.1E-10 73.6 0.4 104 9-112 359-475 (491)
12 4gc0_A D-xylose-proton symport 97.6 7.1E-06 2.4E-10 73.1 -0.3 71 43-113 386-467 (491)
13 2cfq_A Lactose permease; trans 97.6 1.8E-06 6E-11 75.7 -4.4 108 6-113 291-404 (417)
14 2xut_A Proton/peptide symporte 97.5 9.5E-06 3.2E-10 73.0 -0.7 106 7-112 376-506 (524)
15 3ukm_A Potassium channel subfa 40.5 1.4E+02 0.0049 24.0 10.7 39 86-125 10-49 (280)
16 3sk7_A Protein SEQA; sequestra 34.3 20 0.00067 24.6 1.8 25 108-132 74-98 (116)
17 1j3e_A SEQA protein; protein-D 28.0 23 0.00078 24.2 1.3 25 108-132 73-97 (115)
18 3arc_T Photosystem II reaction 25.8 73 0.0025 16.1 2.9 8 108-115 22-29 (32)
19 1lrr_A SEQA protein; protein-D 22.9 33 0.0011 24.0 1.3 24 109-132 90-113 (131)
20 2dw3_A Intrinsic membrane prot 22.5 1.5E+02 0.0051 18.5 4.5 35 253-287 25-59 (77)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.5e-37 Score=280.14 Aligned_cols=290 Identities=24% Similarity=0.393 Sum_probs=228.5
Q ss_pred ccccccccCccccchhhhh------------------ccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchh
Q psy16653 4 VTLNQLALPDGGVGYEINF------------------KETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALG 65 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~ 65 (301)
|+.+.++..++.+++++++ .+++++.++++|+++|++.|+..++++.|++|++|+++||+..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 3456677788888888887 4789999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhccc-------------hhHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHh
Q psy16653 66 SFFQMFLTLGILYLYCLGLS-------------TYTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFY 132 (301)
Q Consensus 66 ~~~~~~~~~G~~~~~~i~~~-------------~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~ 132 (301)
++.+.+...|.++++.++.. .||+.+.+..+++++..+..+ ++||||+|+..|++.|++.+.+++.
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY-TVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG-GSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh-cCCCChHHHHHcCchhHHHHhHHHh
Confidence 99999999999998887532 699999999999999888888 9999999999999999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHhcCCCCCcchhh
Q psy16653 133 RGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSY 212 (301)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 212 (301)
+.++...+ +..+.++..++++ +.......++ +++..+......++++++.+.+.+|.|.+.+..+.+.......
T Consensus 244 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (491)
T 4gc0_A 244 MGNTLATQ-AVQEIKHSLDHGR-KTGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQ 317 (491)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHH-HHTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred cCCchhHH-HHHHHHHHHHhhh-hhhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhH
Confidence 66432221 1111111111111 1111122222 2345666667778888999999999999999886553322211
Q ss_pred -----------------Hhhhccc-----------------------------------------------------ccc
Q psy16653 213 -----------------IQDSLIS-----------------------------------------------------MFD 222 (301)
Q Consensus 213 -----------------l~~~v~~-----------------------------------------------------~~e 222 (301)
+.|++++ .+|
T Consensus 318 ~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 397 (491)
T 4gc0_A 318 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE 397 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555544 789
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhCcchhHHHHHHHHHHHHHHhheecccCCCCCHHHHHHH
Q psy16653 223 CIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVR------HFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTLAQIQRE 296 (301)
Q Consensus 223 ~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~~~~~~ 296 (301)
++|++.|+++.|+++.++++++++++.++|.+.+ ..+...+|++++++++++.++.++++||||+|++||+|+.
T Consensus 398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 9999999999999999999999999999887644 3456668899999999999999999999999999999999
Q ss_pred hccC
Q psy16653 297 LGGE 300 (301)
Q Consensus 297 ~~~~ 300 (301)
++++
T Consensus 478 f~~~ 481 (491)
T 4gc0_A 478 WEPE 481 (491)
T ss_dssp TC--
T ss_pred hCCC
Confidence 9875
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.88 E-value=2.7e-24 Score=191.23 Aligned_cols=261 Identities=12% Similarity=0.052 Sum_probs=188.1
Q ss_pred ccccccccCccccchhhhhc----cCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFK----ETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
|+.+.++..+++++.++.++ +++++.++++|+++|++.|...+....++.|++|+++|++..++.+.+..+|.+++
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g 171 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIP 171 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHH
Confidence 55677888889999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccc-----h-hHHHHHHHHHHHHHHHHHHhcccccchhHHHhcCChHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy16653 80 YCLGLS-----T-YTVIAIGCLAVPILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAIQREIDAA 153 (301)
Q Consensus 80 ~~i~~~-----~-Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
+.++.. + ||+.|++.+++.++..++.++.+||+|+....+.+.++ +. +.+++.+ +++.++.
T Consensus 172 ~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~--~~~~~~~ 238 (451)
T 1pw4_A 172 PLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY---------KN--DYPDDYN--EKAEQEL 238 (451)
T ss_dssp HHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT---------CC--C---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh---------cc--cccccch--hhhhccc
Confidence 888754 7 99999999999988777666589999875322111110 00 0000000 0000000
Q ss_pred hhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHHHHh-cCCCCCcchhh-----------------Hhh
Q psy16653 154 ARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDIFKS-AGSTLDPGFSY-----------------IQD 215 (301)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~-----------------l~~ 215 (301)
..++...++.+++|..+...+. .+ ....+.+.+..+.|.++++ .|.+....... +.|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 313 (451)
T 1pw4_A 239 TAKQIFMQYVLPNKLLWYIAIA----NV-FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 313 (451)
T ss_dssp CCTHHHHHHTSSCHHHHHHHHH----HH-HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHcCHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111123556666533322222 12 2222356778888988887 45552221111 556
Q ss_pred hc--cc---------------------------------------------------ccccCCcchhhhHHHHHHHHHHH
Q psy16653 216 SL--IS---------------------------------------------------MFDCIPFQVKGIATGIAVAVNWI 242 (301)
Q Consensus 216 ~v--~~---------------------------------------------------~~e~~p~~~R~~~~~~~~~~~~~ 242 (301)
++ ++ ..|.+|++.|+++.|+.+...++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 393 (451)
T 1pw4_A 314 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL 393 (451)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence 65 44 78999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheec
Q psy16653 243 -GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVV 282 (301)
Q Consensus 243 -~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (301)
++.++|.+.+.+.++.|+...|.+.+++.+++.++.++..
T Consensus 394 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 394 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888888888888777766543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.80 E-value=1.3e-19 Score=160.39 Aligned_cols=237 Identities=16% Similarity=0.068 Sum_probs=171.2
Q ss_pred ccccccccCccccchhhh---hccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEIN---FKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLY 80 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~ 80 (301)
|+.+.++..+++++.++. .++++++.++++|++.|++.|...+....+++|++|+++|++..++.+.+..+|.++++
T Consensus 91 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~ 170 (438)
T 3o7q_A 91 KAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 566778888889999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc------h-------------------------hHHHHHHHHHHHHHHHHHHhc-ccccchhHHHhcCChHHHHHH
Q psy16653 81 CLGLS------T-------------------------YTVIAIGCLAVPILLLVLFFL-VVPETPIYLMKSGNNKKAEVS 128 (301)
Q Consensus 81 ~i~~~------~-------------------------Wr~~f~~~~~~~~~~~~~~~~-~~~Esp~~l~~~~~~~~a~~~ 128 (301)
.++.. + ||+.|++.+++.++..++.++ ..||+++.. .+
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~------- 240 (438)
T 3o7q_A 171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS------- 240 (438)
T ss_dssp HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-------
T ss_pred HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-------
Confidence 88765 2 999998888777766555442 357665310 00
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHhhccchhhhhhccchhHHHHHHHHHHHHHHhhhchHHHHHhHHHH-HHhc-CCCC
Q psy16653 129 LRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIISLGLMVFQQFSGVNAVIFYSNDI-FKSA-GSTL 206 (301)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~-g~~~ 206 (301)
++ + +++.+.++++++++|..+...+. ..+... ....+..|.|.+ +++. |.+.
T Consensus 241 ------~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 241 ------DA-K--------------QGSFSASLSRLARIRHWRWAVLA-QFCYVG----AQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp ------CS-S--------------TTSHHHHHHHHTTCSHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHSTTCCH
T ss_pred ------cc-c--------------ccchhhhHHHHHhChHHHHHHHH-HHHHHH----HHHHHHHHHHHHhhhccCCcch
Confidence 00 0 01112345677777744433222 222221 245677888888 7776 5553
Q ss_pred Ccchhh-----------------Hhhhccc-----------------------------------------------ccc
Q psy16653 207 DPGFSY-----------------IQDSLIS-----------------------------------------------MFD 222 (301)
Q Consensus 207 ~~~~~~-----------------l~~~v~~-----------------------------------------------~~e 222 (301)
...... +.|++++ ..|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 295 GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221111 4455444 689
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHh
Q psy16653 223 CIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFT 278 (301)
Q Consensus 223 ~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 278 (301)
.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..|.+.+++.++..++.
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99977 899998887 778999999999999999998 8878776655555444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.69 E-value=1.1e-17 Score=150.35 Aligned_cols=103 Identities=10% Similarity=-0.124 Sum_probs=90.7
Q ss_pred ccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCC--ccchhcHHHHHHHHHHHHHHH
Q psy16653 4 VTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTY--LSALGSFFQMFLTLGILYLYC 81 (301)
Q Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~~~~ 81 (301)
|+.+.++..+++++.++.+++++++.++++|++.|++.|...+....+++|++|+++ |+...++++.+.++|..+++.
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 164 (491)
T 4aps_A 85 RPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPL 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999999999999999999999999999999999 667778889999999999988
Q ss_pred hccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 82 LGLS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 82 i~~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
++.. +||+.|++.++..++..+...
T Consensus 165 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 165 IVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8765 899999998877776665554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.66 E-value=4.5e-19 Score=153.92 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=101.8
Q ss_pred cccccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHh
Q psy16653 3 PVTLNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCL 82 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i 82 (301)
+|+.+.++..+.+++.++.+++++++.+++.|++.|++.+...+....++.|+.|+++|++..++.+....+|..+++.+
T Consensus 64 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 143 (375)
T 2gfp_A 64 RRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI 143 (375)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 46777788888899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc-----hhHHHHHHHHHHHHHHHHHHhcccccchhH
Q psy16653 83 GLS-----TYTVIAIGCLAVPILLLVLFFLVVPETPIY 115 (301)
Q Consensus 83 ~~~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp~~ 115 (301)
+.. +||+.|++.+++.++..+...+.+||+|+.
T Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 765 899999999999888877555588998754
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.59 E-value=1.3e-15 Score=138.01 Aligned_cols=104 Identities=8% Similarity=-0.156 Sum_probs=91.4
Q ss_pred cccccccccCccccchhhhhccC-CeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH---HHHHHHHHHHH
Q psy16653 3 PVTLNQLALPDGGVGYEINFKET-RTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF---FQMFLTLGILY 78 (301)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~~G~~~ 78 (301)
+|+.+.++..+++++.++.++++ +++.+++.|++.|++.|...+....++.|++|+++|++..+. .+.+.++|..+
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~ 163 (524)
T 2xut_A 84 KYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF 163 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 35567778888899999999998 999999999999999999999999999999999999887776 88899999999
Q ss_pred HHHhccc-----hhHHHHHHHHHHHHHHHHHHh
Q psy16653 79 LYCLGLS-----TYTVIAIGCLAVPILLLVLFF 106 (301)
Q Consensus 79 ~~~i~~~-----~Wr~~f~~~~~~~~~~~~~~~ 106 (301)
++.++.. +||+.|++.+++.++..+...
T Consensus 164 g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 164 ASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 899999999888777666654
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=7.4e-15 Score=129.40 Aligned_cols=71 Identities=6% Similarity=0.122 Sum_probs=60.9
Q ss_pred ccccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCCCH
Q psy16653 220 MFDCIPFQVKGIATGIA-VAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~ 290 (301)
.+|.+|++.|+++.++. +..+++++.++|.+.+.+.++.|+...|.+.+++++++.++.+...||+++.++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 88999999999999995 788899999999999999998888778888888888888877777787665543
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.90 E-value=9.7e-06 Score=69.62 Aligned_cols=69 Identities=19% Similarity=0.098 Sum_probs=60.6
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHhheecccCCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGK 288 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~~ 288 (301)
..|.+|++.|+++.++.+....++..++|.+.+.+.++.+|+..+.+.++..++..+...+..||++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 113 PRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 789999999999999999999999999999999998888999999888888888877666777876543
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.80 E-value=0.0002 Score=62.78 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=59.1
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFG-SAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
++|.+|++.|+.+.++.+....++..++|.+.+.+.+..| |+.+|++.++++++..++.++..||+++
T Consensus 144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 6778889999999999999999999999999999889898 9999999998888877777666776543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.80 E-value=7.5e-05 Score=65.32 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=52.9
Q ss_pred ccccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhC-------------------------cchhHHHHHHHHHH
Q psy16653 220 MFDCIPFQVKGIATGIAVAVNWIGAFLVTLCFGFLV-RHFG-------------------------SAATFWIFTVCCVV 273 (301)
Q Consensus 220 ~~e~~p~~~R~~~~~~~~~~~~~~~~i~~~~~~~l~-~~~~-------------------------~~~~~~~~~~~~~~ 273 (301)
++|.+|++.|+.+.++.+....+|..+++.+.+.+. +..+ |+..|.+.+++..+
T Consensus 142 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 142 VTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp HHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888 4444 67788777766655
Q ss_pred HHHHhh-eecccCCC
Q psy16653 274 GTVFTF-MVVPETKG 287 (301)
Q Consensus 274 ~~~~~~-~~~~et~~ 287 (301)
..++.+ ...||+++
T Consensus 222 ~~~~~~~~~~p~~~~ 236 (438)
T 3o7q_A 222 VALLIMLTKFPALQS 236 (438)
T ss_dssp HHHHHHHCCCCCCTT
T ss_pred HHHHHHHHcCCcccc
Confidence 544443 33565443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.69 E-value=6e-06 Score=73.62 Aligned_cols=104 Identities=8% Similarity=-0.047 Sum_probs=78.8
Q ss_pred cccCccccchhhhhcc---------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHH
Q psy16653 9 LALPDGGVGYEINFKE---------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYL 79 (301)
Q Consensus 9 ~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~ 79 (301)
++..+.+++.++.... .+.+.+.+.-++.|++.+...+....++.|..|+++||+..++.+....+|..++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~ 438 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALN 438 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444442 2556667778899999999999999999999999999999999999999999999
Q ss_pred HHhccc----hhHHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 80 YCLGLS----TYTVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 80 ~~i~~~----~Wr~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
+.+... ++...|.+.+...++..++.++..++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988765 677788888888887777666444544
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.62 E-value=7.1e-06 Score=73.11 Aligned_cols=71 Identities=11% Similarity=-0.119 Sum_probs=55.9
Q ss_pred ccccchhhhhhccCCCCCccchhcHHHHHHHHHHHHHHHhccc-----------hhHHHHHHHHHHHHHHHHHHhccccc
Q psy16653 43 RDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGILYLYCLGLS-----------TYTVIAIGCLAVPILLLVLFFLVVPE 111 (301)
Q Consensus 43 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~~~~i~~~-----------~Wr~~f~~~~~~~~~~~~~~~~~~~E 111 (301)
+..++...|.+|.+|.+.|+...++......+|..+++.+... ++.+.|++.+.++++..+..++++||
T Consensus 386 ~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 386 SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 3456778999999999999999999888777777776544221 45667888888888888877779999
Q ss_pred ch
Q psy16653 112 TP 113 (301)
Q Consensus 112 sp 113 (301)
+.
T Consensus 466 Tk 467 (491)
T 4gc0_A 466 TK 467 (491)
T ss_dssp CT
T ss_pred CC
Confidence 84
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.61 E-value=1.8e-06 Score=75.68 Aligned_cols=108 Identities=9% Similarity=-0.020 Sum_probs=81.4
Q ss_pred ccccccCccccchhhhhccCCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcH-HHHHHHHHHHHHHHhcc
Q psy16653 6 LNQLALPDGGVGYEINFKETRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSF-FQMFLTLGILYLYCLGL 84 (301)
Q Consensus 6 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~~~~i~~ 84 (301)
+..++..+.+++.++.++.++.+.+++..++.+++.+...+....++.|..|++.||...++ ++....+|..+++.+++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 291 ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHH
Confidence 44445555556555666666767777777778877666667778899999999999998888 47777788888777765
Q ss_pred c-----hhHHHHHHHHHHHHHHHHHHhcccccch
Q psy16653 85 S-----TYTVIAIGCLAVPILLLVLFFLVVPETP 113 (301)
Q Consensus 85 ~-----~Wr~~f~~~~~~~~~~~~~~~~~~~Esp 113 (301)
. +|+..|.+.++..++..++.++..||.+
T Consensus 371 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp THHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 4 7889999989888887777665677755
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.54 E-value=9.5e-06 Score=73.01 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=76.2
Q ss_pred cccccCccccchhhhhcc---------CCeeEEeeechhhhccCcccccchhhhhhccCCCCCccchhcHHHHHHHHHHH
Q psy16653 7 NQLALPDGGVGYEINFKE---------TRTVSIIVTPAQNMASDERDNITLNMLQKEGDAPTYLSALGSFFQMFLTLGIL 77 (301)
Q Consensus 7 ~~~~~~~~~i~~~~~~~~---------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~ 77 (301)
+.+++.+.+++.++.+.. .+.+.+++.-++.|++.+...+....++.|..|+++||+.+++.+....+|..
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 345555555655555543 35555667788999999999999999999999999999999999999999998
Q ss_pred HHHHhccc-------hh---------HHHHHHHHHHHHHHHHHHhcccccc
Q psy16653 78 YLYCLGLS-------TY---------TVIAIGCLAVPILLLVLFFLVVPET 112 (301)
Q Consensus 78 ~~~~i~~~-------~W---------r~~f~~~~~~~~~~~~~~~~~~~Es 112 (301)
+++.+... +| +..|++.+...++..++.+++.++.
T Consensus 456 ~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (524)
T 2xut_A 456 WVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSY 506 (524)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877654 35 4447777777777666665344443
No 15
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=40.50 E-value=1.4e+02 Score=23.97 Aligned_cols=39 Identities=10% Similarity=-0.076 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHH-HHHHHHhcccccchhHHHhcCChHHH
Q psy16653 86 TYTVIAIGCLAVPI-LLLVLFFLVVPETPIYLMKSGNNKKA 125 (301)
Q Consensus 86 ~Wr~~f~~~~~~~~-~~~~~~~~~~~Esp~~l~~~~~~~~a 125 (301)
+|+.++++.+.+.- ++....+ ..-|+|.....+.+.++.
T Consensus 10 ~~~l~lLil~~~~Yl~~GA~vF-~~LE~p~E~~~r~~~~~~ 49 (280)
T 3ukm_A 10 ATMFGFLVLGYLLYLVFGAVVF-SSVELPYEDLLRQELRKL 49 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHH
Confidence 45666665544443 3333333 677888665444333333
No 16
>3sk7_A Protein SEQA; sequestration, negative regulator, DNA replication initiatio binding, replication inhibitor; HET: FME; 1.50A {Vibrio cholerae}
Probab=34.32 E-value=20 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.489 Sum_probs=17.2
Q ss_pred ccccchhHHHhcCChHHHHHHHHHh
Q psy16653 108 VVPETPIYLMKSGNNKKAEVSLRFY 132 (301)
Q Consensus 108 ~~~Esp~~l~~~~~~~~a~~~~~~~ 132 (301)
-+|+||.|...+.+...-+..++++
T Consensus 74 ~Ip~TpfWViTN~NT~rKr~ml~~v 98 (116)
T 3sk7_A 74 AIPNTPFWVITNNNTSRKQQMVEQV 98 (116)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHH
T ss_pred cCCCCCeeEEeCCCcHHHHHHHHHH
Confidence 3688998888777766655555443
No 17
>1j3e_A SEQA protein; protein-DNA complex, recognition of hemimethylated DNA, mismatched DNA, replication; HET: 6MA; 2.50A {Escherichia coli} SCOP: d.228.1.1 PDB: 1iu3_C
Probab=28.02 E-value=23 Score=24.21 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=16.9
Q ss_pred ccccchhHHHhcCChHHHHHHHHHh
Q psy16653 108 VVPETPIYLMKSGNNKKAEVSLRFY 132 (301)
Q Consensus 108 ~~~Esp~~l~~~~~~~~a~~~~~~~ 132 (301)
-+|+||.|...+.+...-+..++++
T Consensus 73 ~Ip~TpfWViTN~NT~rKr~ml~~v 97 (115)
T 1j3e_A 73 HVPGTPYWVITNTNTGRKCSMIEHI 97 (115)
T ss_dssp ECTTSSCEECCCSCHHHHHHHHHHH
T ss_pred cCCCCCeeeeecCChHHHHHHHHHH
Confidence 3688888887777766655555443
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.79 E-value=73 Score=16.12 Aligned_cols=8 Identities=25% Similarity=0.314 Sum_probs=5.9
Q ss_pred ccccchhH
Q psy16653 108 VVPETPIY 115 (301)
Q Consensus 108 ~~~Esp~~ 115 (301)
+.+|+|+.
T Consensus 22 ~FRePPri 29 (32)
T 3arc_T 22 FFREPPRI 29 (32)
T ss_dssp HTSCCCCC
T ss_pred hhcCCCCC
Confidence 67899863
No 19
>1lrr_A SEQA protein; protein-DNA complex, replication, methylated GATC, replication inhibitor/DNA complex; HET: 6MA; 2.65A {Escherichia coli} SCOP: d.228.1.1
Probab=22.91 E-value=33 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=15.1
Q ss_pred cccchhHHHhcCChHHHHHHHHHh
Q psy16653 109 VPETPIYLMKSGNNKKAEVSLRFY 132 (301)
Q Consensus 109 ~~Esp~~l~~~~~~~~a~~~~~~~ 132 (301)
+|+||.|...+.+...-+..++++
T Consensus 90 Ip~TpfWViTN~NT~rKr~ml~~v 113 (131)
T 1lrr_A 90 VPGTPYWVITNTNTGRKCSMIEHI 113 (131)
T ss_dssp CTTSSCEECCCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEecCChHHHHHHHHHH
Confidence 677888877766665555544433
No 20
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.47 E-value=1.5e+02 Score=18.47 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=18.6
Q ss_pred HHHHhhCcchhHHHHHHHHHHHHHHhheecccCCC
Q psy16653 253 FLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKG 287 (301)
Q Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~et~~ 287 (301)
.+...-|+..++++...+.+++.-++=..+||..+
T Consensus 25 qMlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr 59 (77)
T 2dw3_A 25 QMMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQEN 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCS
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHhCchhcc
Confidence 44444556555555555555444444456787543
Done!