RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16653
         (301 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 15/124 (12%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 172 ALIISLGLMVFQQFSGVNAVIFYSNDIFKSAGSTLDPGFSYIQDSLISMFDCIPFQVKGI 231
            + I+  +            +     I       +     +  +         P +  G 
Sbjct: 327 LVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA-------PKKAAGT 379

Query: 232 ATGIAVAVNWI-GAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPETKGKTL 290
           A G      ++ G+   +   G+ V  FG    F +     ++  +   +V+   K +  
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 439

Query: 291 AQIQ 294
             +Q
Sbjct: 440 QLLQ 443


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 5/76 (6%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 220 MFDCIPFQVKGIATGIAVAV-NWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFT 278
           +      +       +       +    +++  G +    G    + +  +  +  T+ +
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396

Query: 279 FMVVPETKGKTLAQIQ 294
              +      +L + Q
Sbjct: 397 VFTLSGPGPLSLLRRQ 412



 Score = 25.5 bits (54), Expect = 9.9
 Identities = 13/74 (17%), Positives = 22/74 (29%)

Query: 226 FQVKGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVPET 285
             +    TGI  A   + + L    FG L    G            +V     F+ +   
Sbjct: 38  NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97

Query: 286 KGKTLAQIQRELGG 299
             +    +   +GG
Sbjct: 98  LLQYNILVGSIVGG 111


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 30.1 bits (67), Expect = 0.27
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 264 FWIFTVCCVVGTVFTFMVVP 283
            ++F V C +GT   F+   
Sbjct: 224 LYVFFVICSIGTFSIFLDAS 243


>d2fsua1 c.67.2.1 (A:12-194) Phosphonate metabolism protein PhnH
           {Escherichia coli [TaxId: 562]}
          Length = 183

 Score = 27.8 bits (62), Expect = 1.2
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 98  PILLLVLFFLVVPETPIYLMKSGNNKKAEVSLRFYRGSRYDVPLELAAI 146
                VL  L   +TP++L    NN     SLRF+  +      E A  
Sbjct: 35  IATTSVLLTLADNDTPVWLSTPLNNDIVNQSLRFHTNAPLVSQPEQATF 83


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 27.8 bits (61), Expect = 1.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 264 FWIFTVCCVVGTVFTFM 280
            +I T   V+GT+F F+
Sbjct: 234 MFIITPVMVLGTIFIFV 250


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 27.1 bits (59), Expect = 2.7
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 264 FWIFTVCCVVGTVFTFM 280
           FWI  +   +GT+  F+
Sbjct: 234 FWIALLLFSIGTLAIFL 250


>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 169

 Score = 26.6 bits (59), Expect = 2.8
 Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 2/55 (3%)

Query: 229 KGIATGIAVAVNWIGAFLVTLCFGFLVRHFGSAATFWIFTVCCVVGTVFTFMVVP 283
           K    G    +    A L     G  +R         + +    +G+    + VP
Sbjct: 79  KSAMVGENGELEHAAAILHPK-LGAPLRKAVEKGAALVPSS-KKMGSPGQVLDVP 131


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 26.8 bits (59), Expect = 3.5
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 124 KAEVSLRFYRGSRYDVPLELAAIQREIDAAARKKASFSDLVSSRANLRALIIS 176
           +A + LR  + +     LE   +  E      + A    ++ S   L  +I  
Sbjct: 427 QAILDLRLQKLTG----LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIRE 475


>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 110

 Score = 25.3 bits (55), Expect = 4.6
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 267 FTVCCVVGTVFTFMVVPETKGKT 289
            T+  V  + F+ M++  T+ K 
Sbjct: 55  LTITHVDDSTFSIMMISYTQSKV 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.415 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,056,726
Number of extensions: 45765
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 17
Length of query: 301
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 216
Effective length of database: 1,240,546
Effective search space: 267957936
Effective search space used: 267957936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)