BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16658
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 97/174 (55%), Gaps = 13/174 (7%)

Query: 144 AESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED 203
           A + I  +  IIVG++    T L+++ VDK GR+ L ++    MA+ +  LG  FY    
Sbjct: 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP 368

Query: 204 GKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFI 263
           G        + LLS++F++  F++ +GP+ W+++ E+F   ++G A  IAVA  W++ + 
Sbjct: 369 G-------IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF 421

Query: 264 VTLCFVFLVKN------LGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQ 311
           V+  F  + KN        +  ++WI+  +  +  LF +  VPETKGKTL +++
Sbjct: 422 VSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475



 Score = 34.3 bits (77), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 21/123 (17%)

Query: 35  DRGQASLIGSLIA---IGAIFGALPAGSIADKFGRKPVILAFCIPFIIS-----WVLILF 86
           +    SL+G  +A   IG I G    G  +++FGR+  +    + F IS     W  + F
Sbjct: 50  ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGF 109

Query: 87  A----KNVLMLFAA---------RFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLS 133
                 N + ++ A         R I G+  G  S + PM+I E+A + IR  + +    
Sbjct: 110 TSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169

Query: 134 AII 136
           AII
Sbjct: 170 AII 172


>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter
          Length = 524

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 48  IGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWV-LILFAKNVLMLFAARFIAGVATG 105
           IG  F  L  G IAD+F G+   IL   + + +    L +F  +V   +   F+  + +G
Sbjct: 65  IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSG 124

Query: 106 GLSAIIPMFIGEIAESSIRA 125
           G+  ++  F+G+  + S ++
Sbjct: 125 GIKPLVSSFMGDQFDQSNKS 144


>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
           Crystallography
 pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
 pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
          Length = 269

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 249 ATGIAVALNWISAFIVTLCFVFLVKNLGSA------ATFWIFSVICFVG-----TLFTFV 297
           A G++VAL  + A   T C +   ++ GSA      +  WIF V  F+G      ++ F+
Sbjct: 171 AIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI 230

Query: 298 LVPETKGKT 306
           L P +   T
Sbjct: 231 LAPRSSDLT 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.144    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,292,917
Number of Sequences: 62578
Number of extensions: 309541
Number of successful extensions: 983
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 12
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)