Query psy16658
Match_columns 318
No_of_seqs 279 out of 1089
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 18:41:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10077 xylE D-xylose transpo 100.0 2E-29 4.4E-34 229.8 25.7 308 2-316 19-474 (479)
2 KOG0569|consensus 100.0 7.6E-29 1.6E-33 218.7 23.3 311 3-316 19-471 (485)
3 COG2814 AraJ Arabinose efflux 100.0 4E-29 8.6E-34 214.3 18.7 278 2-299 20-386 (394)
4 PRK05122 major facilitator sup 100.0 6.5E-28 1.4E-32 214.9 19.2 276 3-297 23-387 (399)
5 PRK09705 cynX putative cyanate 100.0 1.8E-27 4E-32 211.3 21.3 275 12-307 26-389 (393)
6 PRK03545 putative arabinose tr 100.0 1.8E-27 3.9E-32 211.3 19.6 271 9-299 23-380 (390)
7 PRK12382 putative transporter; 100.0 3.7E-27 8E-32 209.5 20.6 275 5-298 25-388 (392)
8 TIGR00879 SP MFS transporter, 100.0 1.2E-26 2.5E-31 211.0 22.9 303 4-307 37-478 (481)
9 TIGR00898 2A0119 cation transp 99.9 4.1E-26 8.8E-31 209.4 23.4 273 16-308 110-503 (505)
10 PRK09556 uhpT sugar phosphate 99.9 6.3E-27 1.4E-31 212.5 17.8 271 10-297 44-447 (467)
11 PRK12307 putative sialic acid 99.9 1.8E-26 3.8E-31 207.4 20.5 260 5-282 28-391 (426)
12 PRK11551 putative 3-hydroxyphe 99.9 2.3E-27 5.1E-32 211.8 14.7 274 4-296 24-393 (406)
13 TIGR01299 synapt_SV2 synaptic 99.9 1.2E-26 2.7E-31 216.9 19.8 119 4-129 176-294 (742)
14 TIGR00887 2A0109 phosphate:H+ 99.9 2.6E-26 5.7E-31 210.2 21.2 300 2-312 23-501 (502)
15 TIGR00890 2A0111 Oxalate/Forma 99.9 1.5E-26 3.2E-31 204.0 18.4 261 13-291 21-374 (377)
16 KOG0254|consensus 99.9 3.2E-25 7E-30 203.3 26.9 312 3-316 53-500 (513)
17 PRK03633 putative MFS family t 99.9 5.1E-26 1.1E-30 201.4 20.6 271 3-295 14-368 (381)
18 cd06174 MFS The Major Facilita 99.9 7.7E-26 1.7E-30 197.4 20.7 274 4-296 8-349 (352)
19 PRK10091 MFS transport protein 99.9 2.1E-26 4.6E-31 203.9 16.8 279 3-300 11-377 (382)
20 PRK10642 proline/glycine betai 99.9 3.6E-26 7.8E-31 208.6 18.6 286 2-304 23-434 (490)
21 TIGR00891 2A0112 putative sial 99.9 8.9E-26 1.9E-30 201.2 19.0 261 4-282 21-399 (405)
22 PRK10489 enterobactin exporter 99.9 4.7E-26 1E-30 204.0 15.5 293 5-316 27-416 (417)
23 PRK11663 regulatory protein Uh 99.9 2.5E-25 5.5E-30 200.2 20.0 278 12-306 40-431 (434)
24 PRK03699 putative transporter; 99.9 7.8E-26 1.7E-30 201.1 16.4 273 5-297 17-378 (394)
25 PRK09874 drug efflux system pr 99.9 1.8E-25 4E-30 199.6 18.3 278 3-300 22-399 (408)
26 COG2271 UhpC Sugar phosphate p 99.9 7.4E-26 1.6E-30 192.1 13.5 272 14-301 48-436 (448)
27 PRK10406 alpha-ketoglutarate t 99.9 4.9E-25 1.1E-29 198.2 18.7 280 4-296 31-421 (432)
28 TIGR00893 2A0114 d-galactonate 99.9 7.1E-25 1.5E-29 194.3 19.5 277 7-296 6-396 (399)
29 PRK03893 putative sialic acid 99.9 2.7E-25 5.9E-30 203.5 17.1 268 4-288 29-442 (496)
30 PRK15075 citrate-proton sympor 99.9 7.6E-25 1.6E-29 197.1 18.8 262 2-278 22-398 (434)
31 KOG0252|consensus 99.9 8.5E-26 1.8E-30 192.8 11.1 304 3-314 49-512 (538)
32 TIGR02332 HpaX 4-hydroxyphenyl 99.9 5.1E-25 1.1E-29 196.8 16.1 262 7-287 20-409 (412)
33 TIGR00900 2A0121 H+ Antiporter 99.9 6.4E-25 1.4E-29 192.8 16.1 256 3-276 7-365 (365)
34 PRK10504 putative transporter; 99.9 3E-24 6.4E-29 195.4 19.3 260 3-278 18-419 (471)
35 PF00083 Sugar_tr: Sugar (and 99.9 6.6E-29 1.4E-33 224.7 -12.1 311 2-314 7-451 (451)
36 PRK09952 shikimate transporter 99.9 7.8E-24 1.7E-28 190.6 20.5 281 5-301 32-434 (438)
37 PRK15034 nitrate/nitrite trans 99.9 1.1E-23 2.5E-28 186.8 20.8 276 14-302 53-457 (462)
38 PRK10213 nepI ribonucleoside t 99.9 7.5E-24 1.6E-28 188.2 19.7 261 13-293 38-385 (394)
39 TIGR00903 2A0129 major facilit 99.9 5.2E-24 1.1E-28 186.9 18.1 264 11-296 7-362 (368)
40 COG2223 NarK Nitrate/nitrite t 99.9 1E-23 2.2E-28 179.4 18.2 275 14-302 33-404 (417)
41 PRK15402 multidrug efflux syst 99.9 1.5E-23 3.2E-28 187.2 20.4 262 5-281 23-377 (406)
42 TIGR00899 2A0120 sugar efflux 99.9 1.2E-23 2.6E-28 185.7 18.3 274 3-296 5-371 (375)
43 PRK14995 methyl viologen resis 99.9 9.7E-24 2.1E-28 192.8 17.8 257 2-274 13-413 (495)
44 PRK11273 glpT sn-glycerol-3-ph 99.9 5.4E-23 1.2E-27 186.0 22.4 267 33-310 59-445 (452)
45 PRK10473 multidrug efflux syst 99.9 1.4E-23 3E-28 186.6 16.5 255 8-286 16-361 (392)
46 TIGR00711 efflux_EmrB drug res 99.9 8.1E-24 1.8E-28 193.2 15.2 258 3-275 10-411 (485)
47 TIGR00897 2A0118 polyol permea 99.9 4.2E-23 9E-28 184.1 19.2 277 5-297 23-399 (402)
48 TIGR00710 efflux_Bcr_CflA drug 99.9 3.6E-23 7.7E-28 183.3 18.6 254 6-274 16-361 (385)
49 TIGR00881 2A0104 phosphoglycer 99.9 1.6E-23 3.4E-28 184.8 16.1 262 5-280 5-378 (379)
50 PRK11195 lysophospholipid tran 99.9 3.5E-23 7.6E-28 183.8 16.7 268 7-298 15-379 (393)
51 PRK10054 putative transporter; 99.9 4.3E-23 9.3E-28 183.4 16.9 275 4-296 16-381 (395)
52 TIGR00889 2A0110 nucleoside tr 99.9 3E-22 6.5E-27 179.1 18.6 283 9-305 16-408 (418)
53 PRK11646 multidrug resistance 99.9 1.2E-22 2.7E-27 180.7 16.0 269 5-292 20-381 (400)
54 PLN00028 nitrate transmembrane 99.9 1.2E-22 2.5E-27 184.7 15.8 265 12-298 53-432 (476)
55 PRK11102 bicyclomycin/multidru 99.9 3.7E-22 8E-27 176.5 18.4 245 8-268 4-343 (377)
56 TIGR00712 glpT glycerol-3-phos 99.9 1.5E-22 3.2E-27 182.5 15.9 265 32-303 56-437 (438)
57 TIGR00883 2A0106 metabolite-pr 99.9 3E-22 6.5E-27 177.6 17.0 265 8-285 6-387 (394)
58 PF07690 MFS_1: Major Facilita 99.9 1.5E-22 3.3E-27 176.9 14.5 247 3-265 4-352 (352)
59 PRK11043 putative transporter; 99.9 7.1E-22 1.5E-26 176.2 19.0 254 9-277 20-360 (401)
60 TIGR00894 2A0114euk Na(+)-depe 99.9 9.4E-22 2E-26 178.7 20.0 262 31-297 70-448 (465)
61 TIGR00895 2A0115 benzoate tran 99.9 9.8E-22 2.1E-26 174.6 17.8 246 7-271 29-397 (398)
62 TIGR00892 2A0113 monocarboxyla 99.9 3.6E-22 7.8E-27 180.6 15.2 259 15-293 39-415 (455)
63 KOG1330|consensus 99.9 3.6E-22 7.8E-27 171.4 13.2 256 10-275 48-413 (493)
64 TIGR00896 CynX cyanate transpo 99.9 3.7E-21 8E-26 168.8 20.0 245 10-276 15-350 (355)
65 PRK15403 multidrug efflux syst 99.9 3.2E-21 6.9E-26 172.3 18.9 118 5-129 26-143 (413)
66 PF05977 MFS_3: Transmembrane 99.9 2.8E-21 6.1E-26 175.3 18.5 268 10-296 25-391 (524)
67 PRK10133 L-fucose transporter; 99.9 1.5E-21 3.2E-26 175.5 16.0 264 5-290 36-424 (438)
68 KOG2532|consensus 99.9 2.9E-21 6.3E-26 172.4 17.1 259 30-299 66-447 (466)
69 KOG0253|consensus 99.9 3.8E-21 8.3E-26 160.1 16.2 260 32-306 108-526 (528)
70 PRK15011 sugar efflux transpor 99.9 9.4E-21 2E-25 168.4 19.8 273 4-296 24-388 (393)
71 TIGR00885 fucP L-fucose:H+ sym 99.9 4.8E-21 1E-25 170.8 18.0 258 4-283 12-396 (410)
72 KOG0255|consensus 99.9 6.5E-20 1.4E-24 168.9 24.7 272 32-313 113-506 (521)
73 KOG3764|consensus 99.9 1.9E-21 4.1E-26 163.6 11.5 262 30-298 99-453 (464)
74 PRK09528 lacY galactoside perm 99.9 2E-20 4.3E-25 167.9 18.5 275 6-300 21-404 (420)
75 TIGR00902 2A0127 phenyl propri 99.9 4.1E-20 8.9E-25 163.7 18.4 264 5-293 14-373 (382)
76 PRK11010 ampG muropeptide tran 99.8 3.3E-20 7.2E-25 169.1 16.8 277 5-298 22-402 (491)
77 PRK11652 emrD multidrug resist 99.8 5.7E-20 1.2E-24 163.5 16.9 251 8-275 21-361 (394)
78 TIGR00886 2A0108 nitrite extru 99.8 6.4E-20 1.4E-24 161.5 14.0 236 8-260 14-365 (366)
79 PRK11902 ampG muropeptide tran 99.8 2.6E-19 5.6E-24 159.7 16.7 271 6-297 10-388 (402)
80 TIGR00792 gph sugar (Glycoside 99.8 5.9E-19 1.3E-23 159.1 19.1 253 8-277 12-383 (437)
81 PRK11128 putative 3-phenylprop 99.8 9.4E-19 2E-23 155.1 18.7 261 6-291 15-371 (382)
82 PRK08633 2-acyl-glycerophospho 99.8 1.6E-18 3.5E-23 173.9 21.8 242 35-288 45-399 (1146)
83 TIGR00882 2A0105 oligosacchari 99.8 1.3E-18 2.9E-23 154.9 18.6 273 6-296 13-392 (396)
84 TIGR00924 yjdL_sub1_fam amino 99.8 2.4E-18 5.2E-23 156.2 18.6 286 8-300 23-469 (475)
85 PRK06814 acylglycerophosphoeth 99.8 3.7E-18 8E-23 171.0 20.7 250 37-287 52-410 (1140)
86 PRK10207 dipeptide/tripeptide 99.8 1.2E-17 2.5E-22 151.9 18.5 266 32-299 45-476 (489)
87 COG0738 FucP Fucose permease [ 99.8 5.8E-18 1.3E-22 143.6 15.2 266 5-292 23-402 (422)
88 KOG2504|consensus 99.8 6.8E-18 1.5E-22 152.7 12.6 253 32-297 76-474 (509)
89 KOG2615|consensus 99.8 9.2E-18 2E-22 140.8 11.9 97 32-129 63-159 (451)
90 PF03825 Nuc_H_symport: Nucleo 99.7 1E-16 2.2E-21 141.5 18.6 278 7-302 14-398 (400)
91 TIGR00901 2A0125 AmpG-related 99.7 2.9E-17 6.2E-22 144.2 14.7 240 9-258 2-355 (356)
92 PRK09584 tppB putative tripept 99.7 2.6E-16 5.6E-21 143.8 16.7 105 13-123 39-145 (500)
93 TIGR02718 sider_RhtX_FptX side 99.7 1.3E-15 2.9E-20 135.3 17.4 276 5-293 11-385 (390)
94 PRK09669 putative symporter Ya 99.7 2.4E-15 5.2E-20 136.0 18.9 236 32-277 40-391 (444)
95 KOG4686|consensus 99.7 2.5E-16 5.5E-21 127.3 9.9 255 29-297 71-441 (459)
96 PF06609 TRI12: Fungal trichot 99.7 4.5E-15 9.7E-20 135.0 19.1 107 14-129 63-169 (599)
97 PRK10429 melibiose:sodium symp 99.7 4E-15 8.8E-20 135.4 18.3 257 8-277 19-396 (473)
98 TIGR00806 rfc RFC reduced fola 99.7 6.8E-15 1.5E-19 129.2 18.4 132 17-178 48-180 (511)
99 KOG2533|consensus 99.7 1.6E-15 3.5E-20 136.1 14.4 101 29-129 73-173 (495)
100 PRK09848 glucuronide transport 99.7 4.9E-15 1.1E-19 134.1 17.7 251 11-277 24-391 (448)
101 COG2807 CynX Cyanate permease 99.7 9.8E-15 2.1E-19 122.4 17.3 265 11-297 28-383 (395)
102 PF11700 ATG22: Vacuole efflux 99.6 4.6E-14 1E-18 127.1 20.7 256 37-296 70-465 (477)
103 PF01306 LacY_symp: LacY proto 99.6 1.4E-15 3E-20 132.5 10.5 278 10-305 22-406 (412)
104 COG2270 Permeases of the major 99.6 8.5E-14 1.8E-18 119.3 20.5 255 35-302 56-431 (438)
105 TIGR01301 GPH_sucrose GPH fami 99.6 3.9E-14 8.5E-19 127.0 17.8 287 10-304 19-476 (477)
106 PTZ00207 hypothetical protein; 99.6 2.5E-14 5.3E-19 130.9 16.7 105 16-129 48-158 (591)
107 PRK15462 dipeptide/tripeptide 99.6 1.3E-13 2.8E-18 124.2 19.6 110 14-129 28-141 (493)
108 TIGR00805 oat sodium-independe 99.6 1E-14 2.3E-19 136.3 12.9 137 8-172 46-233 (633)
109 PF13347 MFS_2: MFS/sugar tran 99.6 5.7E-14 1.2E-18 126.4 17.2 237 32-278 32-388 (428)
110 COG2211 MelB Na+/melibiose sym 99.5 1.5E-12 3.3E-17 114.8 20.9 254 8-277 25-399 (467)
111 PRK11462 putative transporter; 99.5 5E-13 1.1E-17 121.1 18.2 236 32-277 40-390 (460)
112 TIGR00788 fbt folate/biopterin 99.5 1.5E-13 3.3E-18 124.6 14.1 241 32-276 56-415 (468)
113 TIGR00893 2A0114 d-galactonate 99.5 1.5E-12 3.3E-17 115.2 15.4 142 149-302 31-172 (399)
114 TIGR00900 2A0121 H+ Antiporter 99.5 6.4E-13 1.4E-17 116.6 12.1 140 150-296 37-176 (365)
115 PRK10054 putative transporter; 99.5 1.4E-12 3E-17 116.2 14.0 178 89-302 8-185 (395)
116 TIGR00710 efflux_Bcr_CflA drug 99.4 2.2E-12 4.8E-17 114.2 14.2 142 150-303 43-184 (385)
117 PRK10091 MFS transport protein 99.4 3.7E-12 8.1E-17 112.9 14.5 142 150-303 41-182 (382)
118 TIGR00880 2_A_01_02 Multidrug 99.4 6.7E-13 1.5E-17 99.9 8.4 120 43-183 4-123 (141)
119 PRK03545 putative arabinose tr 99.4 4.2E-12 9.2E-17 112.9 14.3 141 150-302 47-187 (390)
120 PRK11663 regulatory protein Uh 99.4 3.5E-12 7.5E-17 115.0 13.8 140 150-301 61-200 (434)
121 PRK14995 methyl viologen resis 99.4 4.7E-12 1E-16 116.1 13.7 157 134-302 27-185 (495)
122 PRK10213 nepI ribonucleoside t 99.4 9.4E-12 2E-16 110.7 14.5 141 150-302 58-198 (394)
123 TIGR02332 HpaX 4-hydroxyphenyl 99.4 9.9E-12 2.1E-16 111.3 14.6 142 150-303 46-193 (412)
124 PF07690 MFS_1: Major Facilita 99.4 2.3E-12 4.9E-17 112.6 9.9 139 150-300 35-173 (352)
125 PRK11102 bicyclomycin/multidru 99.4 7.8E-12 1.7E-16 110.6 13.2 141 150-302 29-169 (377)
126 PRK10473 multidrug efflux syst 99.4 7.7E-12 1.7E-16 111.3 13.1 142 150-303 41-182 (392)
127 TIGR00880 2_A_01_02 Multidrug 99.4 3.4E-12 7.3E-17 96.0 9.2 136 154-301 5-140 (141)
128 COG2814 AraJ Arabinose efflux 99.4 1.2E-11 2.7E-16 106.9 13.6 139 150-300 51-189 (394)
129 TIGR00903 2A0129 major facilit 99.4 2.1E-11 4.6E-16 107.2 14.7 157 134-303 12-169 (368)
130 TIGR00881 2A0104 phosphoglycer 99.4 4.8E-12 1E-16 111.6 10.5 141 150-302 33-174 (379)
131 TIGR00711 efflux_EmrB drug res 99.4 4.6E-12 1E-16 115.8 10.6 141 150-302 40-180 (485)
132 PRK15403 multidrug efflux syst 99.3 1.7E-11 3.7E-16 109.8 13.8 141 151-303 55-195 (413)
133 PRK09874 drug efflux system pr 99.3 3.4E-11 7.3E-16 107.6 15.7 140 150-302 57-196 (408)
134 PRK11551 putative 3-hydroxyphe 99.3 1.9E-11 4.2E-16 109.2 13.8 141 150-302 53-193 (406)
135 cd06174 MFS The Major Facilita 99.3 9.7E-12 2.1E-16 108.4 11.0 154 10-190 190-344 (352)
136 KOG1330|consensus 99.3 5.2E-13 1.1E-17 115.5 2.0 145 150-306 71-216 (493)
137 TIGR00891 2A0112 putative sial 99.3 5.4E-11 1.2E-15 106.0 15.0 140 150-302 50-191 (405)
138 PRK11646 multidrug resistance 99.3 7.9E-11 1.7E-15 105.1 16.0 139 150-301 49-187 (400)
139 COG2271 UhpC Sugar phosphate p 99.3 5.2E-12 1.1E-16 108.3 7.9 141 150-302 67-209 (448)
140 KOG2563|consensus 99.3 1.3E-10 2.9E-15 100.5 15.7 261 32-301 75-452 (480)
141 PRK11195 lysophospholipid tran 99.3 7.2E-11 1.6E-15 105.1 14.8 174 88-302 3-176 (393)
142 COG3104 PTR2 Dipeptide/tripept 99.3 2.9E-10 6.2E-15 100.0 17.9 264 32-297 56-485 (498)
143 TIGR00895 2A0115 benzoate tran 99.3 1.5E-11 3.2E-16 109.2 10.0 141 150-302 55-195 (398)
144 PRK10489 enterobactin exporter 99.3 9.1E-11 2E-15 105.3 14.9 144 150-301 55-198 (417)
145 PRK10504 putative transporter; 99.3 9.7E-11 2.1E-15 106.8 15.2 140 150-301 48-187 (471)
146 PRK11652 emrD multidrug resist 99.3 1.2E-10 2.5E-15 103.8 15.1 142 150-303 46-187 (394)
147 PRK03699 putative transporter; 99.3 1.5E-10 3.3E-15 103.1 15.6 134 150-295 45-179 (394)
148 PRK15402 multidrug efflux syst 99.3 1.3E-10 2.8E-15 104.0 14.9 141 151-303 52-192 (406)
149 TIGR00890 2A0111 Oxalate/Forma 99.3 2E-11 4.4E-16 107.5 9.4 131 32-183 235-367 (377)
150 PRK12307 putative sialic acid 99.3 9E-11 1.9E-15 105.6 13.2 124 150-285 56-179 (426)
151 TIGR00924 yjdL_sub1_fam amino 99.3 5.9E-11 1.3E-15 108.0 12.1 132 150-293 51-186 (475)
152 TIGR00902 2A0127 phenyl propri 99.3 4E-11 8.7E-16 106.3 10.5 137 11-176 221-358 (382)
153 PRK05122 major facilitator sup 99.2 5.8E-11 1.3E-15 105.9 11.5 134 38-192 250-383 (399)
154 PRK11043 putative transporter; 99.2 2.3E-10 5E-15 102.1 15.2 137 150-298 44-180 (401)
155 TIGR00894 2A0114euk Na(+)-depe 99.2 6.4E-11 1.4E-15 107.8 11.2 141 150-300 79-220 (465)
156 TIGR00889 2A0110 nucleoside tr 99.2 8.1E-11 1.8E-15 105.5 11.2 121 35-176 249-374 (418)
157 TIGR01299 synapt_SV2 synaptic 99.2 9.9E-11 2.2E-15 110.6 12.2 114 39-173 597-710 (742)
158 KOG2325|consensus 99.2 1.7E-11 3.6E-16 108.6 6.5 120 4-129 43-168 (488)
159 PF03209 PUCC: PUCC protein; 99.2 7.7E-09 1.7E-13 89.3 22.4 234 31-274 9-363 (403)
160 PRK12382 putative transporter; 99.2 8.2E-11 1.8E-15 104.7 10.8 131 38-189 250-380 (392)
161 PRK03893 putative sialic acid 99.2 2.5E-10 5.5E-15 104.8 14.3 125 150-286 58-182 (496)
162 TIGR00897 2A0118 polyol permea 99.2 3E-10 6.6E-15 101.4 14.2 129 150-286 51-180 (402)
163 PRK15011 sugar efflux transpor 99.2 1.5E-10 3.2E-15 103.2 11.8 147 16-190 237-383 (393)
164 TIGR01272 gluP glucose/galacto 99.2 1E-09 2.2E-14 94.3 16.6 185 85-284 5-300 (310)
165 TIGR00886 2A0108 nitrite extru 99.2 3.8E-10 8.2E-15 99.3 14.1 140 150-301 40-190 (366)
166 PRK09705 cynX putative cyanate 99.2 2.9E-10 6.3E-15 101.2 13.5 128 150-290 47-175 (393)
167 PF05977 MFS_3: Transmembrane 99.2 1.2E-10 2.6E-15 106.4 10.6 160 8-194 231-390 (524)
168 PLN00028 nitrate transmembrane 99.2 7.3E-10 1.6E-14 101.1 15.7 136 151-299 75-219 (476)
169 TIGR00712 glpT glycerol-3-phos 99.2 1.5E-10 3.3E-15 104.6 11.2 145 150-302 64-209 (438)
170 KOG3762|consensus 99.2 9.8E-11 2.1E-15 103.2 9.2 135 150-296 409-544 (618)
171 KOG3764|consensus 99.2 4.5E-11 9.7E-16 101.7 6.8 145 149-305 108-253 (464)
172 TIGR00899 2A0120 sugar efflux 99.2 1.7E-10 3.6E-15 101.9 10.5 133 32-186 230-362 (375)
173 TIGR00892 2A0113 monocarboxyla 99.2 4.1E-10 8.8E-15 102.2 13.1 135 150-297 57-192 (455)
174 PRK09556 uhpT sugar phosphate 99.2 1.3E-10 2.9E-15 105.8 9.8 144 149-299 66-212 (467)
175 PRK15462 dipeptide/tripeptide 99.2 2.1E-10 4.6E-15 103.5 10.7 131 151-292 49-182 (493)
176 TIGR00887 2A0109 phosphate:H+ 99.2 7.2E-10 1.6E-14 101.9 14.4 145 151-302 60-227 (502)
177 PRK09528 lacY galactoside perm 99.2 2.4E-10 5.3E-15 102.6 10.9 134 32-186 257-391 (420)
178 PRK11273 glpT sn-glycerol-3-ph 99.2 5.1E-10 1.1E-14 101.5 13.1 145 150-302 66-211 (452)
179 PRK10077 xylE D-xylose transpo 99.1 8E-10 1.7E-14 101.0 13.9 152 150-303 58-218 (479)
180 TIGR00885 fucP L-fucose:H+ sym 99.1 2E-09 4.3E-14 96.3 15.4 137 150-295 41-203 (410)
181 PRK15034 nitrate/nitrite trans 99.1 5.5E-09 1.2E-13 93.5 17.8 145 149-301 72-234 (462)
182 PRK10642 proline/glycine betai 99.1 8.6E-10 1.9E-14 101.1 12.8 145 153-302 63-215 (490)
183 PRK10406 alpha-ketoglutarate t 99.1 2.5E-09 5.5E-14 96.4 15.5 136 152-291 68-211 (432)
184 PRK10207 dipeptide/tripeptide 99.1 6.4E-10 1.4E-14 101.5 11.3 125 151-286 54-181 (489)
185 TIGR00898 2A0119 cation transp 99.1 1.6E-09 3.4E-14 99.8 13.8 137 150-302 130-266 (505)
186 TIGR00879 SP MFS transporter, 99.1 8.2E-10 1.8E-14 100.4 11.7 143 150-302 74-219 (481)
187 PRK03633 putative MFS family t 99.1 2.4E-09 5.1E-14 95.0 13.8 152 88-275 6-157 (381)
188 KOG2532|consensus 99.1 2.5E-09 5.4E-14 96.2 13.9 141 150-300 76-217 (466)
189 PRK15075 citrate-proton sympor 99.1 2.1E-09 4.5E-14 97.1 13.6 121 161-285 70-198 (434)
190 PF05631 DUF791: Protein of un 99.1 6.8E-08 1.5E-12 82.2 21.3 140 32-193 64-211 (354)
191 TIGR00901 2A0125 AmpG-related 99.1 3.9E-09 8.5E-14 92.6 14.6 159 133-302 8-181 (356)
192 KOG2615|consensus 99.1 3.3E-10 7.1E-15 96.0 7.2 111 150-273 71-181 (451)
193 PRK08633 2-acyl-glycerophospho 99.1 3.3E-09 7.1E-14 107.1 15.4 115 151-274 51-165 (1146)
194 PRK11128 putative 3-phenylprop 99.1 1.1E-09 2.4E-14 97.1 10.3 135 14-177 224-359 (382)
195 PRK09952 shikimate transporter 99.0 2.4E-09 5.2E-14 96.7 12.5 132 155-290 72-211 (438)
196 TIGR00883 2A0106 metabolite-pr 99.0 5.3E-10 1.2E-14 99.1 7.4 137 14-177 238-379 (394)
197 TIGR00896 CynX cyanate transpo 99.0 1.9E-08 4.1E-13 88.3 15.3 127 150-290 38-166 (355)
198 PRK06814 acylglycerophosphoeth 99.0 9.1E-09 2E-13 103.8 14.6 142 151-302 56-197 (1140)
199 PRK09584 tppB putative tripept 99.0 6.2E-09 1.3E-13 95.5 11.8 124 156-290 66-192 (500)
200 PRK11902 ampG muropeptide tran 99.0 1.8E-08 3.9E-13 90.1 14.4 132 161-302 46-184 (402)
201 PF06609 TRI12: Fungal trichot 99.0 4.7E-09 1E-13 96.1 10.5 151 135-298 66-216 (599)
202 COG2223 NarK Nitrate/nitrite t 99.0 2.7E-08 5.9E-13 85.8 14.5 143 148-301 50-195 (417)
203 TIGR00805 oat sodium-independe 98.9 1.1E-08 2.4E-13 96.1 11.4 146 150-296 71-278 (633)
204 KOG0255|consensus 98.9 2.7E-08 5.8E-13 92.0 13.5 137 150-302 121-257 (521)
205 PRK11010 ampG muropeptide tran 98.9 5.8E-08 1.3E-12 89.0 15.2 131 162-302 60-197 (491)
206 TIGR00806 rfc RFC reduced fola 98.9 3.2E-08 7E-13 87.7 12.6 120 149-282 64-183 (511)
207 TIGR01301 GPH_sucrose GPH fami 98.9 7.4E-08 1.6E-12 86.9 15.1 153 150-303 42-222 (477)
208 TIGR02718 sider_RhtX_FptX side 98.9 9.9E-09 2.1E-13 91.3 9.4 141 15-183 228-376 (390)
209 PF11700 ATG22: Vacuole efflux 98.9 4.3E-08 9.4E-13 88.8 13.3 126 32-178 312-447 (477)
210 PF03137 OATP: Organic Anion T 98.8 5E-10 1.1E-14 102.7 -0.4 120 3-129 11-180 (539)
211 PRK10133 L-fucose transporter; 98.8 1.4E-07 3.1E-12 85.2 15.0 114 150-272 64-177 (438)
212 KOG0254|consensus 98.8 4.3E-08 9.4E-13 90.4 11.9 139 150-302 92-232 (513)
213 TIGR00882 2A0105 oligosacchari 98.8 3.1E-08 6.6E-13 88.4 10.6 133 33-186 250-383 (396)
214 PF03092 BT1: BT1 family; Int 98.8 1.4E-07 3.1E-12 84.8 14.4 242 32-276 20-382 (433)
215 TIGR01272 gluP glucose/galacto 98.8 1.8E-08 3.9E-13 86.6 7.9 139 15-181 160-298 (310)
216 KOG2816|consensus 98.8 4.6E-07 1E-11 81.4 16.2 212 45-274 70-392 (463)
217 TIGR00792 gph sugar (Glycoside 98.7 5.9E-08 1.3E-12 87.6 9.6 120 35-175 255-382 (437)
218 KOG0569|consensus 98.7 1.1E-07 2.5E-12 85.0 10.4 144 149-302 62-207 (485)
219 COG2270 Permeases of the major 98.7 9.8E-08 2.1E-12 82.5 9.4 128 31-179 282-409 (438)
220 PF06813 Nodulin-like: Nodulin 98.6 7.7E-07 1.7E-11 73.2 12.7 115 32-169 32-153 (250)
221 PTZ00207 hypothetical protein; 98.6 5.2E-07 1.1E-11 83.3 12.8 131 162-300 76-206 (591)
222 PF06779 DUF1228: Protein of u 98.6 4.7E-08 1E-12 65.4 4.3 82 6-94 3-84 (85)
223 PF03825 Nuc_H_symport: Nucleo 98.6 2.3E-07 5.1E-12 82.3 9.8 149 6-182 218-373 (400)
224 KOG2533|consensus 98.6 2.5E-07 5.5E-12 83.7 9.6 143 150-304 84-232 (495)
225 COG3104 PTR2 Dipeptide/tripept 98.6 6.6E-08 1.4E-12 85.4 5.6 137 153-299 67-206 (498)
226 KOG2504|consensus 98.6 5.3E-07 1.1E-11 82.3 11.3 139 150-300 84-222 (509)
227 KOG4332|consensus 98.6 2.2E-07 4.7E-12 75.5 7.1 218 31-254 66-386 (454)
228 PF13347 MFS_2: MFS/sugar tran 98.5 1.4E-06 3.1E-11 78.5 12.4 147 6-177 236-388 (428)
229 KOG3098|consensus 98.5 1.1E-05 2.3E-10 72.0 17.5 86 43-129 56-141 (461)
230 PRK09848 glucuronide transport 98.5 6E-07 1.3E-11 81.4 9.1 104 14-123 247-352 (448)
231 COG0477 ProP Permeases of the 98.5 7.4E-07 1.6E-11 75.6 8.5 113 10-129 17-134 (338)
232 COG2807 CynX Cyanate permease 98.4 4.5E-06 9.7E-11 71.0 11.3 154 15-196 228-382 (395)
233 PF00083 Sugar_tr: Sugar (and 98.3 3.8E-09 8.2E-14 95.8 -8.8 143 150-302 49-194 (451)
234 KOG3626|consensus 98.3 6.6E-06 1.4E-10 76.7 12.1 118 5-129 107-276 (735)
235 PRK09669 putative symporter Ya 98.3 2.6E-06 5.7E-11 77.2 9.2 147 150-302 48-207 (444)
236 PRK10429 melibiose:sodium symp 98.3 1.1E-05 2.4E-10 73.7 12.5 147 150-302 45-204 (473)
237 TIGR00788 fbt folate/biopterin 98.3 3.9E-06 8.5E-11 76.5 9.2 125 30-175 281-415 (468)
238 PF01306 LacY_symp: LacY proto 98.3 3.9E-06 8.5E-11 73.8 8.4 129 33-182 255-384 (412)
239 KOG4686|consensus 98.2 3.4E-06 7.3E-11 69.4 6.7 144 11-177 274-418 (459)
240 KOG2816|consensus 98.2 1.5E-05 3.2E-10 71.8 11.6 138 155-307 70-207 (463)
241 PF12832 MFS_1_like: MFS_1 lik 98.2 8.2E-07 1.8E-11 58.9 2.7 60 10-76 15-74 (77)
242 PF03209 PUCC: PUCC protein; 98.2 1.9E-05 4.1E-10 68.7 10.8 124 160-284 27-161 (403)
243 PRK11462 putative transporter; 98.2 7.3E-05 1.6E-09 68.1 15.1 147 150-302 48-207 (460)
244 COG0738 FucP Fucose permease [ 98.1 5.9E-05 1.3E-09 65.3 12.8 139 150-297 51-208 (422)
245 KOG3762|consensus 98.1 2E-06 4.2E-11 76.6 4.0 147 29-196 398-545 (618)
246 KOG0253|consensus 98.1 1.5E-05 3.3E-10 68.0 9.1 84 46-129 390-473 (528)
247 PF05978 UNC-93: Ion channel r 98.1 9.6E-05 2.1E-09 56.3 12.1 114 33-168 33-146 (156)
248 KOG0252|consensus 98.1 9.5E-06 2.1E-10 71.1 7.3 116 151-271 88-203 (538)
249 COG2211 MelB Na+/melibiose sym 98.0 0.00011 2.3E-09 65.7 13.0 141 14-178 255-401 (467)
250 KOG2325|consensus 97.9 0.00015 3.4E-09 64.9 11.8 180 93-302 39-232 (488)
251 PF06813 Nodulin-like: Nodulin 97.9 0.0001 2.2E-09 60.8 8.7 117 151-274 41-157 (250)
252 TIGR00926 2A1704 Peptide:H+ sy 97.9 0.0005 1.1E-08 64.9 14.4 142 152-297 28-180 (654)
253 TIGR00926 2A1704 Peptide:H+ sy 97.8 0.00034 7.4E-09 66.0 13.2 93 32-124 18-119 (654)
254 TIGR00769 AAA ADP/ATP carrier 97.8 0.013 2.9E-07 53.0 21.4 95 35-129 41-168 (472)
255 PF01770 Folate_carrier: Reduc 97.7 0.002 4.2E-08 56.9 14.3 97 32-129 35-132 (412)
256 PF05631 DUF791: Protein of un 97.7 0.0013 2.7E-08 56.6 12.7 144 150-305 72-222 (354)
257 KOG0637|consensus 97.5 0.00039 8.4E-09 61.2 7.6 107 16-129 53-182 (498)
258 PF06963 FPN1: Ferroportin1 (F 97.5 0.016 3.4E-07 52.0 17.7 116 150-267 296-411 (432)
259 PF03092 BT1: BT1 family; Int 97.4 0.00082 1.8E-08 60.7 9.0 139 154-301 29-177 (433)
260 TIGR00769 AAA ADP/ATP carrier 97.4 0.0045 9.8E-08 56.1 13.1 110 164-273 61-190 (472)
261 KOG2563|consensus 97.4 0.0019 4.1E-08 57.0 10.2 119 151-275 83-203 (480)
262 PF05978 UNC-93: Ion channel r 97.3 0.0036 7.7E-08 47.7 9.8 109 151-272 41-149 (156)
263 PF06963 FPN1: Ferroportin1 (F 97.2 0.018 3.9E-07 51.6 14.3 148 151-298 42-199 (432)
264 KOG3574|consensus 97.1 0.0057 1.2E-07 52.9 10.4 114 6-129 42-172 (510)
265 PF00854 PTR2: POT family; In 97.0 0.0038 8.2E-08 55.2 8.4 120 178-300 2-124 (372)
266 COG0477 ProP Permeases of the 96.7 0.031 6.7E-07 47.0 11.9 129 150-288 42-174 (338)
267 PF02487 CLN3: CLN3 protein; 96.7 0.075 1.6E-06 47.0 14.1 82 39-121 61-142 (402)
268 PF03219 TLC: TLC ATP/ADP tran 96.3 0.09 2E-06 48.1 12.3 114 160-273 72-205 (491)
269 KOG3626|consensus 95.9 0.06 1.3E-06 51.0 9.5 153 150-303 135-346 (735)
270 PF03137 OATP: Organic Anion T 95.7 0.0016 3.4E-08 60.3 -1.6 123 150-272 41-201 (539)
271 KOG3810|consensus 95.7 0.031 6.7E-07 47.9 6.0 97 32-129 36-133 (433)
272 PF01770 Folate_carrier: Reduc 95.2 0.42 9.1E-06 42.5 11.8 122 160-294 54-177 (412)
273 PF13000 Acatn: Acetyl-coenzym 94.3 2.3 5.1E-05 38.7 14.1 40 235-274 428-467 (544)
274 KOG3098|consensus 94.1 0.57 1.2E-05 42.4 10.1 107 151-270 54-160 (461)
275 PF12832 MFS_1_like: MFS_1 lik 94.1 0.13 2.8E-06 34.0 4.6 34 150-183 38-71 (77)
276 COG3202 ATP/ADP translocase [E 94.1 1.3 2.9E-05 40.1 12.1 116 159-274 74-210 (509)
277 PF00854 PTR2: POT family; In 93.9 0.17 3.8E-06 44.7 6.5 56 68-123 2-66 (372)
278 KOG1237|consensus 92.6 2.1 4.5E-05 40.2 11.6 90 32-121 68-183 (571)
279 PF02487 CLN3: CLN3 protein; 92.4 0.57 1.2E-05 41.6 7.3 132 151-300 63-196 (402)
280 PF13000 Acatn: Acetyl-coenzym 92.3 2.5 5.3E-05 38.6 11.1 28 90-117 2-29 (544)
281 PRK03612 spermidine synthase; 91.6 1.8 3.9E-05 40.2 9.9 51 246-296 143-194 (521)
282 PRK03612 spermidine synthase; 90.9 4.7 0.0001 37.5 11.9 32 32-63 45-76 (521)
283 KOG3097|consensus 90.0 12 0.00026 32.4 12.6 73 47-120 68-140 (390)
284 PF06779 DUF1228: Protein of u 88.9 2.7 5.8E-05 28.3 6.4 65 133-197 12-77 (85)
285 PF03219 TLC: TLC ATP/ADP tran 88.1 22 0.00047 32.9 19.3 47 238-284 308-355 (491)
286 KOG1237|consensus 87.8 4.8 0.0001 37.9 9.6 142 156-297 82-243 (571)
287 KOG3574|consensus 81.6 19 0.00041 32.1 9.5 21 88-108 31-51 (510)
288 KOG4332|consensus 80.9 9.8 0.00021 32.1 7.3 91 39-129 284-383 (454)
289 KOG1479|consensus 80.5 43 0.00093 30.0 18.3 56 209-265 341-396 (406)
290 TIGR00939 2a57 Equilibrative N 79.8 41 0.0009 30.6 11.8 35 151-185 49-83 (437)
291 TIGR00939 2a57 Equilibrative N 79.7 34 0.00073 31.2 11.2 58 210-268 371-428 (437)
292 COG5336 Uncharacterized protei 76.4 5.1 0.00011 28.0 3.8 53 242-294 36-90 (116)
293 KOG1479|consensus 74.2 50 0.0011 29.6 10.3 32 213-246 119-150 (406)
294 COG4262 Predicted spermidine s 74.0 48 0.001 29.2 9.7 86 32-117 38-132 (508)
295 KOG2601|consensus 65.7 54 0.0012 29.2 8.5 52 239-290 166-217 (503)
296 PF09605 Trep_Strep: Hypotheti 65.5 65 0.0014 25.4 10.8 54 46-102 37-90 (186)
297 COG5336 Uncharacterized protei 65.0 32 0.00069 24.2 5.6 38 38-75 43-81 (116)
298 PF05653 Mg_trans_NIPA: Magnes 63.5 96 0.0021 26.6 11.8 38 66-103 49-86 (300)
299 COG2119 Predicted membrane pro 62.9 73 0.0016 25.0 9.8 57 130-186 101-173 (190)
300 TIGR03173 pbuX xanthine permea 62.4 91 0.002 28.0 9.9 111 32-143 23-134 (406)
301 KOG0637|consensus 61.6 11 0.00024 34.2 3.8 82 40-121 335-416 (498)
302 PF06912 DUF1275: Protein of u 59.7 89 0.0019 25.0 11.5 27 151-177 166-192 (209)
303 PF01914 MarC: MarC family int 58.9 93 0.002 24.9 9.1 61 230-291 21-82 (203)
304 PF00860 Xan_ur_permease: Perm 57.6 1.3E+02 0.0028 26.9 10.0 119 17-145 20-145 (389)
305 COG0861 TerC Membrane protein 55.0 1.1E+02 0.0023 25.6 8.2 41 235-275 39-79 (254)
306 COG3619 Predicted membrane pro 53.4 1.2E+02 0.0027 24.7 11.1 34 150-183 171-204 (226)
307 PF01733 Nucleoside_tran: Nucl 53.2 3.6 7.8E-05 35.4 -0.6 116 152-268 187-304 (309)
308 COG3202 ATP/ADP translocase [E 52.9 1.9E+02 0.0042 26.8 19.7 54 34-87 58-112 (509)
309 PF11947 DUF3464: Protein of u 51.2 62 0.0013 24.6 5.7 32 232-263 114-145 (153)
310 PF07672 MFS_Mycoplasma: Mycop 51.1 93 0.002 26.1 7.2 32 152-183 146-177 (267)
311 KOG3810|consensus 48.1 1.2E+02 0.0026 26.9 7.6 93 169-274 64-156 (433)
312 COG1268 BioY Uncharacterized c 46.3 79 0.0017 24.9 5.9 24 44-67 89-112 (184)
313 COG4769 Predicted membrane pro 45.7 36 0.00079 26.0 3.7 51 46-102 82-132 (181)
314 PRK11111 hypothetical protein; 45.6 1.6E+02 0.0035 23.8 8.2 65 226-291 23-88 (214)
315 PF02632 BioY: BioY family; I 43.2 99 0.0022 23.3 5.9 41 44-84 60-100 (148)
316 TIGR00801 ncs2 uracil-xanthine 42.5 2.6E+02 0.0056 25.3 10.2 111 32-143 33-147 (415)
317 PF06645 SPC12: Microsomal sig 39.2 1.1E+02 0.0024 20.0 5.7 50 73-122 21-70 (76)
318 PF02694 UPF0060: Uncharacteri 38.4 47 0.001 23.3 3.2 48 37-84 54-101 (107)
319 TIGR02185 Trep_Strep conserved 37.6 2E+02 0.0044 22.7 10.3 55 45-102 38-92 (189)
320 PF06645 SPC12: Microsomal sig 37.1 1.2E+02 0.0025 20.0 4.7 33 261-295 20-52 (76)
321 PRK10995 inner membrane protei 36.4 2.3E+02 0.0051 23.0 8.9 64 226-290 21-85 (221)
322 PF10785 NADH-u_ox-rdase: NADH 33.8 1.5E+02 0.0032 20.0 5.0 44 47-90 28-78 (86)
323 PF11947 DUF3464: Protein of u 32.5 76 0.0016 24.1 3.7 67 59-129 56-133 (153)
324 PRK02237 hypothetical protein; 32.0 92 0.002 22.0 3.8 48 37-84 56-103 (109)
325 PF03741 TerC: Integral membra 30.7 2.7E+02 0.0058 21.9 6.8 37 238-274 22-58 (183)
326 PF13493 DUF4118: Domain of un 29.4 20 0.00044 24.9 0.3 25 43-67 81-105 (105)
327 KOG3880|consensus 28.9 1.5E+02 0.0033 25.8 5.3 91 37-129 288-381 (409)
328 PF12670 DUF3792: Protein of u 25.9 2.5E+02 0.0054 20.0 7.8 36 151-186 38-73 (116)
329 KOG3880|consensus 24.8 1.5E+02 0.0032 25.9 4.5 125 39-189 64-190 (409)
330 PF03812 KdgT: 2-keto-3-deoxyg 23.9 4.8E+02 0.01 22.6 9.8 28 247-274 285-312 (314)
331 PF03547 Mem_trans: Membrane t 23.7 2.3E+02 0.005 25.0 6.0 19 157-175 5-23 (385)
332 PRK11715 inner membrane protei 23.4 5.8E+02 0.013 23.4 9.6 35 158-192 308-342 (436)
333 TIGR00986 3a0801s05tom22 mitoc 23.4 1.3E+02 0.0028 22.5 3.5 23 238-260 59-81 (145)
334 TIGR02230 ATPase_gene1 F0F1-AT 23.2 2.7E+02 0.0058 19.5 6.5 33 160-192 56-88 (100)
335 TIGR00427 membrane protein, Ma 22.4 4.1E+02 0.0088 21.2 8.2 63 227-290 21-84 (201)
336 PF04281 Tom22: Mitochondrial 22.0 3.4E+02 0.0074 20.2 6.3 24 238-261 61-84 (137)
337 COG2095 MarC Multiple antibiot 21.8 4.3E+02 0.0092 21.2 7.1 52 238-289 31-83 (203)
338 PF06123 CreD: Inner membrane 21.7 6.2E+02 0.014 23.1 9.4 35 158-192 302-336 (430)
339 PF10183 ESSS: ESSS subunit of 21.3 1.6E+02 0.0034 20.7 3.5 36 270-305 52-87 (105)
340 PF09527 ATPase_gene1: Putativ 20.2 2.1E+02 0.0045 17.1 5.1 37 44-80 7-45 (55)
No 1
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.97 E-value=2e-29 Score=229.79 Aligned_cols=308 Identities=28% Similarity=0.490 Sum_probs=230.8
Q ss_pred cccccccccccccccccccccccccc-cccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTET-SVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS 80 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (318)
++.+..+++.+..++..|.+.+++.+ ...+++.++.+.+++.+.+.++..++++++|+++||+||||+++.+..+..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~ 98 (479)
T PRK10077 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (479)
T ss_pred HHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677899999999999988887543 23456899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH------------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------hhHhHH------
Q psy16658 81 WVLILFA------------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------GLSAII------ 136 (318)
Q Consensus 81 ~~~~~~~------------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------~~~~~~------ 136 (318)
.+.++++ +.++.+++.|+++|++.|...+...++++|++|+|+|+++++. ++..+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 178 (479)
T PRK10077 99 ALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178 (479)
T ss_pred HHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888763 2356788999999999999999999999999999999998880 000000
Q ss_pred -----------------hHHH---------------HHH----------h-----------------------h--c--c
Q psy16658 137 -----------------PMFI---------------GEI----------A-----------------------E--S--S 147 (318)
Q Consensus 137 -----------------p~~~---------------~~~----------~-----------------------~--~--~ 147 (318)
+... +|. + + + .
T Consensus 179 ~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (479)
T PRK10077 179 IARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGR 258 (479)
T ss_pred HhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhh
Confidence 0000 000 0 0 0 0
Q ss_pred c--c----------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658 148 I--R----------------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL 179 (318)
Q Consensus 148 ~--~----------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 179 (318)
+ + +......++...++.++.+++.||+|||+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~ 338 (479)
T PRK10077 259 KTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL 338 (479)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 0 0 011123445667788999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH
Q psy16658 180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI 259 (318)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 259 (318)
+..+..+.+++.+.+....... ...........+.+.++...+.+..+.++.|.+|+++|+++.|+.+...++
T Consensus 339 ~i~~~~~~~v~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 411 (479)
T PRK10077 339 QIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWI 411 (479)
T ss_pred HHHhHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHH
Confidence 9998888888777665432110 112223334444555555555566668899999999999999999999999
Q ss_pred HHHHHHHHHHHHH------HHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcC
Q psy16658 260 SAFIVTLCFVFLV------KNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316 (318)
Q Consensus 260 g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
+..+++.+.+.+. |..+++..+++.+..+.++.++.+.+.||+|+++.+|.++..++
T Consensus 412 g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 412 ANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP 474 (479)
T ss_pred HHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence 9999987776554 56777788888888877777777777889998888887776554
No 2
>KOG0569|consensus
Probab=99.97 E-value=7.6e-29 Score=218.71 Aligned_cols=311 Identities=30% Similarity=0.531 Sum_probs=248.7
Q ss_pred ccccccccccccccccccccccccc-cccCcC--CCCChh----HHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTET-SVLNEP--VDRGQA----SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCI 75 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~--~s~~~~----g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 75 (318)
+++-.|+..+..++-.+.+.+..++ ..+++| .++++. +.+.+++.+|.+++++..+.++||+|||..+.++.+
T Consensus 19 gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~ 98 (485)
T KOG0569|consen 19 GSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNL 98 (485)
T ss_pred hchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 4466777777777776655544422 123344 454444 567889999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------
Q psy16658 76 PFIISWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------------------- 129 (318)
Q Consensus 76 ~~~~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------------------- 129 (318)
+..++.++..++ ++++.++++|++.|+..|........++.|..|++.||....
T Consensus 99 l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilG 178 (485)
T KOG0569|consen 99 LAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLG 178 (485)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcC
Confidence 888888777764 789999999999999999999999999999999999997776
Q ss_pred -------hhhHhHHhHHH----------------------------------------------HHHhhc--c--cc---
Q psy16658 130 -------GGLSAIIPMFI----------------------------------------------GEIAES--S--IR--- 149 (318)
Q Consensus 130 -------~~~~~~~p~~~----------------------------------------------~~~~~~--~--~~--- 149 (318)
......+|.++ +|.+++ + ++
T Consensus 179 t~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl 258 (485)
T KOG0569|consen 179 TEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISL 258 (485)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcH
Confidence 11222222222 000000 0 00
Q ss_pred ------------------------------------------h-------HHHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658 150 ------------------------------------------G-------ISAIIVGIVQFIMTALSVVLVDKAGRRILL 180 (318)
Q Consensus 150 ------------------------------------------g-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 180 (318)
| +.....+..+.+.++++.++.||.|||+.+
T Consensus 259 ~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLl 338 (485)
T KOG0569|consen 259 RQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLL 338 (485)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 1 777788899999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658 181 LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS 260 (318)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 260 (318)
+.+..++.++.+++.......+... ....+..+.+.+++...++.+.+|+++-+.+|++|++.|.++.++.....+..
T Consensus 339 l~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~ 416 (485)
T KOG0569|consen 339 LISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLS 416 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 9999999998888877655544321 12234456778888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcC
Q psy16658 261 AFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGG 316 (318)
Q Consensus 261 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
+++-......+.+..|. ..|..+.+.+....+..++++||||+|+..|..++.++
T Consensus 417 ~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 417 NFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999997 78888999999999999999999999999888877654
No 3
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4e-29 Score=214.31 Aligned_cols=278 Identities=23% Similarity=0.288 Sum_probs=221.0
Q ss_pred cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
++.|..+..+....+++|++++| +++|..+.|+..+.|.++..++.++...+.||+.||++++..+.++.+++
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~d-------l~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n 92 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAAD-------LGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSN 92 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 56788899999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------------------------
Q psy16658 82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------------- 129 (318)
Q Consensus 82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------------- 129 (318)
+++++++||+.++++|++.|++.|..++...++..|..|+++|+++++
T Consensus 93 ~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ 172 (394)
T COG2814 93 LLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLA 172 (394)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred --hhhHhHHh---HHHH--HHhhcc------------cc--------------------------------------hHH
Q psy16658 130 --GGLSAIIP---MFIG--EIAESS------------IR--------------------------------------GIS 152 (318)
Q Consensus 130 --~~~~~~~p---~~~~--~~~~~~------------~~--------------------------------------g~~ 152 (318)
.+....+- ..++ +..++. ++ ++.
T Consensus 173 ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~ 252 (394)
T COG2814 173 IAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLV 252 (394)
T ss_pred HHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHH
Confidence 00000000 0002 111110 00 488
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
...+++++++|+.++|++.|| +.|+.+.............+.+. ..+.+.......++++.........
T Consensus 253 Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~----------~~~~~~~~~~~~~wg~a~~~~~~~~ 321 (394)
T COG2814 253 LLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFT----------GASPALALALLFLWGFAFSPALQGL 321 (394)
T ss_pred HHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhhhhhhHH
Confidence 899999999999999999999 88888887777777776666553 2233344444444333333322222
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
. ....+ .-||.+..+.+++....|+|...|..++|.+.|+.|+....++.+.....+..+.....
T Consensus 322 ~-~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~ 386 (394)
T COG2814 322 Q-TRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSA 386 (394)
T ss_pred H-HHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33444 33566899999999999999999999999999999998888888888777766665433
No 4
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.96 E-value=6.5e-28 Score=214.87 Aligned_cols=276 Identities=17% Similarity=0.166 Sum_probs=207.3
Q ss_pred cccccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
..+...++.++..|.+|.+. ++ +|.|+.+.|++.+++.++..+++++.|+++||+||||++..+.++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~l~~~i~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~ 95 (399)
T PRK05122 23 FTFISYLTIGLPLAVLPGYVHDQ-------LGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSG 95 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------cCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHH
Confidence 34556677788889999754 55 89999999999999999999999999999999999999999999888877
Q ss_pred HHHHHH--------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------------------------
Q psy16658 82 VLILFA--------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------------ 129 (318)
Q Consensus 82 ~~~~~~--------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------------ 129 (318)
+.+.++ .+++.+++.|+++|++.+...+...+++.|++|+|+|+++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~ 175 (399)
T PRK05122 96 LLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG 175 (399)
T ss_pred HHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence 666553 257789999999999999999999999999999999998877
Q ss_pred -----hhhHhHHhHH---H-HHHhh----ccc---------c----------------------------------hHHH
Q psy16658 130 -----GGLSAIIPMF---I-GEIAE----SSI---------R----------------------------------GISA 153 (318)
Q Consensus 130 -----~~~~~~~p~~---~-~~~~~----~~~---------~----------------------------------g~~~ 153 (318)
.......+.+ . .+..+ +++ + +...
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (399)
T PRK05122 176 GLAGLGLLIMLLALLGLLLARPRPAVPPVKGERLPFRRVLGRVWPYGMGLALASIGFGTIATFITLYYAARGWDGAALAL 255 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHH
Confidence 0000011100 0 10000 000 0 2444
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP 233 (318)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
....++.++++++.+++.||+++|+.+..+.....++...+... .+.+.......+.+.+.+..++...
T Consensus 256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~~~~~~~~~ 324 (399)
T PRK05122 256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----------PSPWMALIGAALTGFGFSLVFPALG 324 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56677788899999999999999998887777666666555442 1223334444555555554443333
Q ss_pred eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
....|..|+++|+++.|+.+...++|..+++.+.|.+.|+.|++..+++.+...+++.+....
T Consensus 325 -~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 325 -VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred -HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 455688899999999999999999999999999999999999999988888777776655554
No 5
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.96 E-value=1.8e-27 Score=211.32 Aligned_cols=275 Identities=14% Similarity=0.121 Sum_probs=206.2
Q ss_pred cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658 12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL 91 (318)
Q Consensus 12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~ 91 (318)
....+.+|.+.+| +|+|.++.+++.+.+.+++.+++++.|+++||+||||++..+..+.+++.+.+++++|++
T Consensus 26 ~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQA-------SGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA 98 (393)
T ss_pred hccchhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence 5567888999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhHHhH-----------------------
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAIIPM----------------------- 138 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~~p~----------------------- 138 (318)
.+++.|+++|++.+...+....++.|++| |+|+++++ .+...+.|.
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~ 177 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL 177 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 77888876 000000010
Q ss_pred --HH---HHH-h--hcc---------cc-------------------------------------hHHHHHHHHHHHHHH
Q psy16658 139 --FI---GEI-A--ESS---------IR-------------------------------------GISAIIVGIVQFIMT 164 (318)
Q Consensus 139 --~~---~~~-~--~~~---------~~-------------------------------------g~~~~~~~~~~~~~~ 164 (318)
.. ++. + +++ ++ |....+.++++++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~ 257 (393)
T PRK09705 178 FAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGA 257 (393)
T ss_pred HHHHHHhcCCCccccCCCcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHH
Confidence 00 010 0 000 00 477788889999999
Q ss_pred HHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc-ch
Q psy16658 165 ALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF-AP 243 (318)
Q Consensus 165 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~ 243 (318)
++.+++.||.+||+....+..+..++..++... . ..... ....+.+.+.+...+... ....+.. |+
T Consensus 258 ~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~--~--------~~~~~--~~~~l~g~g~g~~~~~~~-~~~~~~~~~~ 324 (393)
T PRK09705 258 LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWL--P--------LQLPV--LWAMVCGLGLGGAFPLCL-LLALDHSVQP 324 (393)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHc--c--------chHHH--HHHHHHHHhccchHHHHH-HHHHhhcCCH
Confidence 999999999999998888766666655544321 0 00111 112233333333333222 3334555 56
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658 244 EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPETKGKTL 307 (318)
Q Consensus 244 ~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
++|++..|+.+...+++..++|.+.|++.|+.| +...+.+....+.+..+..+...||+++++.
T Consensus 325 ~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 325 AIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 789999999999999999999999999999987 6666777666666666666666777766543
No 6
>PRK03545 putative arabinose transporter; Provisional
Probab=99.96 E-value=1.8e-27 Score=211.34 Aligned_cols=271 Identities=15% Similarity=0.108 Sum_probs=201.2
Q ss_pred ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Q psy16658 9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK 88 (318)
Q Consensus 9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 88 (318)
.......+.+|.+.+| +|.|+++.|++.+.+.+++.+++++.|++.||+||||++..+..+..++++.+.+++
T Consensus 23 ~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 95 (390)
T PRK03545 23 TTEFVPVGLLSDIAQS-------FHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAW 95 (390)
T ss_pred hHHHHHHcchHHHHhH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334455678888888 999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------------
Q psy16658 89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------------- 140 (318)
Q Consensus 89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------------- 140 (318)
|++.+++.|+++|++.+...+...+++.|++|+|+|+++++ .+...+.|.+.
T Consensus 96 ~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l 175 (390)
T PRK03545 96 NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALI 175 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999988 00000001000
Q ss_pred ---------HHHhhc--c----------cc--------------------------------------hHHHHHHHHHHH
Q psy16658 141 ---------GEIAES--S----------IR--------------------------------------GISAIIVGIVQF 161 (318)
Q Consensus 141 ---------~~~~~~--~----------~~--------------------------------------g~~~~~~~~~~~ 161 (318)
+|.+++ + ++ |......+++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~ 255 (390)
T PRK03545 176 TLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGI 255 (390)
T ss_pred HHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 110000 0 00 466677788899
Q ss_pred HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658 162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF 241 (318)
Q Consensus 162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (318)
+++++.+++.||+++|+.. .+......+...+... ..+.+.......+.+.+.... .+.....+.|..
T Consensus 256 ~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~ 323 (390)
T PRK03545 256 IGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA----------ANSEWHLSVLSIFWGIAIMCI-GLAMQVKVLKLA 323 (390)
T ss_pred HHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHH----------hchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHhC
Confidence 9999999999999987643 3433333333322221 112233334444444443322 222225556666
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
| ++|++++|+++...++|..+||.+.|.+.|+.|++..++..+.+.+++.+..+...
T Consensus 324 ~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 324 P-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 5 57899999999999999999999999999999999999888888877776665544
No 7
>PRK12382 putative transporter; Provisional
Probab=99.95 E-value=3.7e-27 Score=209.51 Aligned_cols=275 Identities=16% Similarity=0.178 Sum_probs=205.1
Q ss_pred ccccccccccccccccc-cccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPIL-TSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
+......++..|.+|.+ .+| +|.|..+.|++.+.+.++..++++++|+++||+||||++..+.+...++.+.
T Consensus 25 ~~~~~~~~~~~p~l~~~l~~~-------lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~ 97 (392)
T PRK12382 25 FLTYMTVGLPLPVIPLFVHHD-------LGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA 97 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHHh-------cCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 34445567777888875 455 8999999999999999999999999999999999999999988877766543
Q ss_pred HHH--------HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------------------
Q psy16658 84 ILF--------AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------- 129 (318)
Q Consensus 84 ~~~--------~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------- 129 (318)
... .++++.+++.|+++|++.+...+...+++.|++|+|+|+++++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 322 3688999999999999999888989999999999999999887
Q ss_pred ---hhhHhHHhHHH----HHHhh---cc---cc-----------------------------------------hHHHHH
Q psy16658 130 ---GGLSAIIPMFI----GEIAE---SS---IR-----------------------------------------GISAII 155 (318)
Q Consensus 130 ---~~~~~~~p~~~----~~~~~---~~---~~-----------------------------------------g~~~~~ 155 (318)
.......+... .+.++ ++ ++ +.....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (392)
T PRK12382 178 AALALTTMVLPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTA 257 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcccCchHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHhcCCchhHHHHHH
Confidence 01111111110 11110 00 00 244455
Q ss_pred HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
..++.+++++..|++.||+++||.+..+..+..++..++... .+.+.......+.+.+.+...+... .
T Consensus 258 ~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~~~~-~ 325 (392)
T PRK12382 258 FGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----------PTAWVALAGAALTGAGCSLIFPALG-V 325 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHHHHhHHHHHH-H
Confidence 666778889999999999999999888877777666554431 1223334444455555444333333 5
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
...|..|+++|+++.|+.+...+++..++|.+.|.+.|+.||+..+.+.+...++..++.+..
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 667889999999999999999999999999999999999999999988888777766655543
No 8
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.95 E-value=1.2e-26 Score=211.03 Aligned_cols=303 Identities=31% Similarity=0.558 Sum_probs=226.1
Q ss_pred ccccccccccccccccccccccccc-ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETS-VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
.++.+++.+...+.+|.+..+.+.. ..+.+.+..+.+++.+.+.++..++++++|+++||+|||+++..+.++..++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 116 (481)
T TIGR00879 37 GLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAI 116 (481)
T ss_pred HHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4556777788888888887773321 112235589999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh----------------
Q psy16658 83 LILFAK---NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP---------------- 137 (318)
Q Consensus 83 ~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p---------------- 137 (318)
++.+.+ +++.+++.|+++|++.+...+...+++.|++|+++|+++++ .++..+.|
T Consensus 117 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~ 196 (481)
T TIGR00879 117 LMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWR 196 (481)
T ss_pred HHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHH
Confidence 886643 45689999999999999999999999999999999998877 00000000
Q ss_pred ---------HHH--------HH------------H-----hh------------c-------------------------
Q psy16658 138 ---------MFI--------GE------------I-----AE------------S------------------------- 146 (318)
Q Consensus 138 ---------~~~--------~~------------~-----~~------------~------------------------- 146 (318)
.+. +| . ++ +
T Consensus 197 ~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (481)
T TIGR00879 197 IPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS 276 (481)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHh
Confidence 000 00 0 00 0
Q ss_pred --c--cc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhh
Q psy16658 147 --S--IR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSD 184 (318)
Q Consensus 147 --~--~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 184 (318)
+ .+ +.......+..+++.++.+++.||++||+.+..+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 356 (481)
T TIGR00879 277 STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356 (481)
T ss_pred cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 0 01 24556677788899999999999999999998887
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHH
Q psy16658 185 FVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIV 264 (318)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~ 264 (318)
....++...+...........+ ....+.......+...++..+..+....++.|.+|+++|+++.++.+...+++.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~ 435 (481)
T TIGR00879 357 AGMAICLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV 435 (481)
T ss_pred HHHHHHHHHHHHHhhcccCCcc-cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666543222111100 011233344445555566666667776787999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658 265 TLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307 (318)
Q Consensus 265 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
|.+.+.+.++.+++..|++.++++++..+..++..+|+++++.
T Consensus 436 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 436 GFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 9999999999999888998888888888877777787776554
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=99.95 E-value=4.1e-26 Score=209.42 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=203.8
Q ss_pred cccccccccccccccCcCCC---CChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658 16 PVLPILTSTTETSVLNEPVD---RGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM 92 (318)
Q Consensus 16 ~~lp~~~~~~~~~~~~~~~s---~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~ 92 (318)
+..|.+.+| ++++ +.+.++..+++.++..++.+++|+++||+|||++++++.++..++.++.+++++++.
T Consensus 110 ~~~~~i~~e-------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (505)
T TIGR00898 110 TFSSTIVTE-------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTV 182 (505)
T ss_pred cccccEEEE-------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 455666666 8888 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH-------------------hHHH-------
Q psy16658 93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII-------------------PMFI------- 140 (318)
Q Consensus 93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~-------------------p~~~------- 140 (318)
+++.|++.|++.+...+...+++.|++|+++|++..+ .++.... |.++
T Consensus 183 ~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~ 262 (505)
T TIGR00898 183 FLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWF 262 (505)
T ss_pred HHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998777 0000000 0000
Q ss_pred -HH-----------------------------------H--hh----cc----------cc-------------------
Q psy16658 141 -GE-----------------------------------I--AE----SS----------IR------------------- 149 (318)
Q Consensus 141 -~~-----------------------------------~--~~----~~----------~~------------------- 149 (318)
+| . ++ ++ ++
T Consensus 263 ~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 342 (505)
T TIGR00898 263 VPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFS 342 (505)
T ss_pred cCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 00 00
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658 150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP 214 (318)
Q Consensus 150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (318)
.....+.++..+++.++.+++.||+|||+.+..+.++.+++++.+.... ....+..
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 413 (505)
T TIGR00898 343 YYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP---------VDLYFLR 413 (505)
T ss_pred HHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC---------CCchHHH
Confidence 1334455677788899999999999999999988887777766655421 1111222
Q ss_pred HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q psy16658 215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLF 294 (318)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 294 (318)
.....+...+....+ +..+.+..|.+|++.|+++.|+.+....+|+.++|.+.+ + +..++...+.++++..+++.++
T Consensus 414 ~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 414 TALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHH
Confidence 333333333333333 344478899999999999999999999999999999998 4 4455556777777777766555
Q ss_pred hheeccCCCCCCHH
Q psy16658 295 TFVLVPETKGKTLN 308 (318)
Q Consensus 295 ~~~~~~~~~~~~~~ 308 (318)
.+ ++||+++++.+
T Consensus 491 ~~-~lpet~~~~l~ 503 (505)
T TIGR00898 491 TL-FLPETKGVPLP 503 (505)
T ss_pred HH-cCcCCCCCCCC
Confidence 44 56888876654
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.95 E-value=6.3e-27 Score=212.49 Aligned_cols=271 Identities=14% Similarity=0.038 Sum_probs=194.1
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH---
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF--- 86 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--- 86 (318)
+....++.+|.+.+| +|++..+.|++.+.+.+++.+++++.|+++||+||||++..+.+++++..+..++
T Consensus 44 ~r~~~~~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~ 116 (467)
T PRK09556 44 IRKNFKAAQNDMIST-------YGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLG 116 (467)
T ss_pred HhcChhhhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHh
Confidence 444556778888888 9999999999999999999999999999999999999999988888887776665
Q ss_pred --HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------hhhH---------------hHH
Q psy16658 87 --AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------GGLS---------------AII 136 (318)
Q Consensus 87 --~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------~~~~---------------~~~ 136 (318)
+++++.+++.|+++|++.+...|...+++.||+|+++|+++++ .... ...
T Consensus 117 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~ 196 (467)
T PRK09556 117 SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIF 196 (467)
T ss_pred cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHH
Confidence 5899999999999999999999999999999999999998887 0000 000
Q ss_pred ----------hHHH-----HHH----------------hh----c-c-------------cc------------------
Q psy16658 137 ----------PMFI-----GEI----------------AE----S-S-------------IR------------------ 149 (318)
Q Consensus 137 ----------p~~~-----~~~----------------~~----~-~-------------~~------------------ 149 (318)
+... +|. ++ + + ++
T Consensus 197 ~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (467)
T PRK09556 197 PSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIG 276 (467)
T ss_pred HHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 0000 110 00 0 0 00
Q ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcc
Q psy16658 150 --------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS 209 (318)
Q Consensus 150 --------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (318)
+.......++..++.++.|+++||++||+.+.........+...+... . ..
T Consensus 277 ~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~------~~ 347 (467)
T PRK09556 277 IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQ---H------AT 347 (467)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---h------cC
Confidence 355566778889999999999999999987765443333222211111 0 11
Q ss_pred cchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHH------------Hhc
Q psy16658 210 ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVK------------NLG 276 (318)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~------------~~g 276 (318)
+.+.......+.+.......... .....|.+|++.|+++.|+.+...++ |..++|.+.|.+.| ..|
T Consensus 348 ~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~ 426 (467)
T PRK09556 348 SEYMYLASLFALGFLVFGPQLLI-GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG 426 (467)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHH-HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC
Confidence 12222233333332221111111 14456999999999999999999997 77999999999999 578
Q ss_pred hhhHHHHHHHHHHHHHHHhhe
Q psy16658 277 SAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~ 297 (318)
|+..|++..+..+++.+..+.
T Consensus 427 ~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 427 WAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 988998887777766555443
No 11
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.95 E-value=1.8e-26 Score=207.37 Aligned_cols=260 Identities=20% Similarity=0.253 Sum_probs=193.6
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+..+++.....+.+|.+.++ +|.++.+.+++.+.+.++..++++++|+++||+|||+++.++..+.+++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 100 (426)
T PRK12307 28 VFDGFDFMLIFYIMYLIKAD-------LGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLS 100 (426)
T ss_pred HHHHhHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH----------------------
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII---------------------- 136 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~---------------------- 136 (318)
+++++++.+++.|+++|++.+...+....++.|++|+|+|+++.+ .++..+.
T Consensus 101 ~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 101 GLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998877 0000000
Q ss_pred hHHH--------HHH----h----hcc-------------------cc--------------------------------
Q psy16658 137 PMFI--------GEI----A----ESS-------------------IR-------------------------------- 149 (318)
Q Consensus 137 p~~~--------~~~----~----~~~-------------------~~-------------------------------- 149 (318)
+.+. +|. + +++ ++
T Consensus 181 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (426)
T PRK12307 181 PVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG 260 (426)
T ss_pred HHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 000 0 000 00
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHH
Q psy16658 150 --------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFF 221 (318)
Q Consensus 150 --------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
+.......++.++++++.+++.||++||+.+..+.....+....+... . .. ... .....++
T Consensus 261 ~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~------~~-~~~-~~~~~~~ 329 (426)
T PRK12307 261 EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---P------QD-NYL-LLGACLF 329 (426)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---c------cc-cHH-HHHHHHH
Confidence 234455667788889999999999999998887766655544333221 0 01 111 1222222
Q ss_pred HHHH-HhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q psy16658 222 IVMF-SLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFW 282 (318)
Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 282 (318)
+... ..+..+....++.|.+|+++|++++|+.+....+++.++|.+.|.+.++.|+....+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 330 GLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred HHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 2221 112223333667899999999999999999999999999999999999988654433
No 12
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.95 E-value=2.3e-27 Score=211.75 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=202.9
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.++.+++.....+..|.+.++ ++.++++.+++.+.+.++..++.++.|+++||+||||++..+..+..++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (406)
T PRK11551 24 ALLEGLDLQSAGVAAPRMAQE-------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLA 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 344566666777788888888 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hh-----------------------h--
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GG-----------------------L-- 132 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~-----------------------~-- 132 (318)
+.++++++.+++.|+++|++.+...+...+++.|++|+|+|+++++ .+ .
T Consensus 97 ~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (406)
T PRK11551 97 TAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG 176 (406)
T ss_pred HHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887 00 0
Q ss_pred ---HhHHhHH---HHHH----hh----ccc-------------c------------------------------------
Q psy16658 133 ---SAIIPMF---IGEI----AE----SSI-------------R------------------------------------ 149 (318)
Q Consensus 133 ---~~~~p~~---~~~~----~~----~~~-------------~------------------------------------ 149 (318)
....+.. .+|. ++ +++ +
T Consensus 177 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~ 256 (406)
T PRK11551 177 VGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQ 256 (406)
T ss_pred HHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 0000000 0110 00 000 0
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 150 -GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 150 -g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
|.......++.++++++.|++.||++||+.+..+.....++...+... ...+.......+.+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~- 324 (406)
T PRK11551 257 AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----------PSFAGMLLAGFAAGLFVVG- 324 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-----------CcHHHHHHHHHHHHHHHHh-
Confidence 366667778889999999999999999998887655555554443321 1122223333333333332
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhh
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 296 (318)
..+...++..|.+|+++|+++.|+.+...+++..++|.+.|.+.++.+ +...+.......+++.+..+
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 233344777899999999999999999999999999999999998754 44444444444444444443
No 13
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.95 E-value=1.2e-26 Score=216.91 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=110.2
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..+++.....+++|.+.++ ++++..+.+++.+++.++.+++.+++|+++||+|||++++++.++.++++++
T Consensus 176 ~~~~g~d~~~is~ilp~i~~~-------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll 248 (742)
T TIGR01299 176 LMADGVEVFVVGFVLPSAEKD-------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFF 248 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 344566666778888988888 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
++++++++.+++.|+++|++.++..+...+++.|++|+++|++.++
T Consensus 249 ~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g 294 (742)
T TIGR01299 249 SSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLS 294 (742)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776
No 14
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.95 E-value=2.6e-26 Score=210.21 Aligned_cols=300 Identities=27% Similarity=0.337 Sum_probs=216.2
Q ss_pred cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
++.+..+++.+..+.++|.+..+.. ..+.+.++.+.+++.+.+.++..++.+++|+++||+|||+++.++.++..++.
T Consensus 23 ~~~~~~g~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~ 100 (502)
T TIGR00887 23 VGFFTDSYDLFCISLVTKMLGYVYY--HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIAT 100 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 3456788888888888887765421 11245667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhH--------
Q psy16658 82 VLILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLS-------- 133 (318)
Q Consensus 82 ~~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~-------- 133 (318)
++++++++ ++.+++.|+++|++.|...+....++.|++|+|+|+++++ .+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~ 180 (502)
T TIGR00887 101 VASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH 180 (502)
T ss_pred HHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998866 7899999999999999999999999999999999999888 0000
Q ss_pred -----------------------------hHHhHHH--------------------H-HH-h----------------h-
Q psy16658 134 -----------------------------AIIPMFI--------------------G-EI-A----------------E- 145 (318)
Q Consensus 134 -----------------------------~~~p~~~--------------------~-~~-~----------------~- 145 (318)
..+|.++ + |. + +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 260 (502)
T TIGR00887 181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEV 260 (502)
T ss_pred ccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccc
Confidence 0011111 0 10 0 0
Q ss_pred -------ccc--------------c--------------------h-------------H-------------------H
Q psy16658 146 -------SSI--------------R--------------------G-------------I-------------------S 152 (318)
Q Consensus 146 -------~~~--------------~--------------------g-------------~-------------------~ 152 (318)
+.. + | . .
T Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~ 340 (502)
T TIGR00887 261 EKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGN 340 (502)
T ss_pred cchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHH
Confidence 000 0 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
..+..++.+++.++.+++.||+|||+.+..+..++.+++.++........ .. .......+....+..+..+.
T Consensus 341 ~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~ 412 (502)
T TIGR00887 341 LIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS------TH--GFLAIYVLAQFFANFGPNAT 412 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc------hh--HHHHHHHHHHHHHhcCCCch
Confidence 01111233446677889999999999988887777777666654321100 00 11222222233344556667
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------chhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL----------GSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.|.. ++...+.+++++++++.+. .+++||+
T Consensus 413 ~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt 491 (502)
T TIGR00887 413 TFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPET 491 (502)
T ss_pred hhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccC
Confidence 7788899999999999999999999999999999999998843 3455778888777776554 4667999
Q ss_pred CCCCHHHHHH
Q psy16658 303 KGKTLNQIQR 312 (318)
Q Consensus 303 ~~~~~~~~~~ 312 (318)
++++.+|.++
T Consensus 492 ~~~~leei~~ 501 (502)
T TIGR00887 492 KGKSLEELSG 501 (502)
T ss_pred CCCCHHhhhC
Confidence 9988877654
No 15
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.95 E-value=1.5e-26 Score=203.98 Aligned_cols=261 Identities=18% Similarity=0.162 Sum_probs=198.8
Q ss_pred ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658 13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM 92 (318)
Q Consensus 13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~ 92 (318)
...+.+|.+.++ +|+++++.|++.+.+.++..++++++|+++||+|||+++..+..+..++.+.++++++++.
T Consensus 21 ~~~~~~~~~~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (377)
T TIGR00890 21 TWTLLAPPLGRY-------FGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAA 93 (377)
T ss_pred hhhhHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 346778888888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH-hH---------------------------
Q psy16658 93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII-PM--------------------------- 138 (318)
Q Consensus 93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~-p~--------------------------- 138 (318)
+++.|++.|++.+..++.....+.|++| |+|+++.+ .+...+. |.
T Consensus 94 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 94 LYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888999987 56888777 0000000 00
Q ss_pred -H--HHHHhh-----c--------------ccc-------------------------------------hHHHHHHHHH
Q psy16658 139 -F--IGEIAE-----S--------------SIR-------------------------------------GISAIIVGIV 159 (318)
Q Consensus 139 -~--~~~~~~-----~--------------~~~-------------------------------------g~~~~~~~~~ 159 (318)
. .++.++ + +++ +....+..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (377)
T TIGR00890 173 GAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIF 252 (377)
T ss_pred HHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 011000 0 000 3566677888
Q ss_pred HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecc
Q psy16658 160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGE 239 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (318)
..+++++.+++.||++||+.+..+.....++...+.... ............+.+...+....... .+..|
T Consensus 253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~-~~~~~ 322 (377)
T TIGR00890 253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP---------MLNDVLFLATVALVFFTWGGTISLFP-SLVSD 322 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc---------cchhHHHHHHHHHHHHHhccchhccH-HHHHH
Confidence 889999999999999999998888777777665554320 01111122223333333333333333 67789
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658 240 LFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG 291 (318)
Q Consensus 240 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 291 (318)
.+|+++|+++.|+.+....+|..++|.+.|.+.|+.||+..+.+.+.+.+++
T Consensus 323 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 323 IFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988888776665554
No 16
>KOG0254|consensus
Probab=99.95 E-value=3.2e-25 Score=203.26 Aligned_cols=312 Identities=32% Similarity=0.597 Sum_probs=246.0
Q ss_pred cccccccc--ccccccccccccccccccccCcCCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHH
Q psy16658 3 GAVTIGTG--LAWTSPVLPILTSTTETSVLNEPVDR--GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFI 78 (318)
Q Consensus 3 ~~~~~~~~--~~~~~~~lp~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~ 78 (318)
+.+..|++ .+...++.+.+.++..... ...+. ++.+|+.+...++..+++++.|+++|++|||+.++++.++..
T Consensus 53 ~~~~fg~~g~~g~~s~~~~~~~~~~~~~~--~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~ 130 (513)
T KOG0254|consen 53 GGLLFGYDGDIGGISGALDFLQRFASLYD--LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFL 130 (513)
T ss_pred HHHHhCcccccccchhhHHHHHhcccccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34556665 6777888887777632111 12222 466999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------
Q psy16658 79 ISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------------------------- 129 (318)
Q Consensus 79 ~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------------------------- 129 (318)
++.+++++++|++.++++|+++|+|.|......+.+++|..|++.||...+
T Consensus 131 iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~ 210 (513)
T KOG0254|consen 131 IGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRI 210 (513)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHH
Confidence 999999999999999999999999999999999999999999999998877
Q ss_pred hhhHhHHhHHH-------------------------------------------HHHh----------hcc---------
Q psy16658 130 GGLSAIIPMFI-------------------------------------------GEIA----------ESS--------- 147 (318)
Q Consensus 130 ~~~~~~~p~~~-------------------------------------------~~~~----------~~~--------- 147 (318)
......+|.++ ++.+ +++
T Consensus 211 ~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (513)
T KOG0254|consen 211 PLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSP 290 (513)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCc
Confidence 00111111111 0000 000
Q ss_pred -cc--------------------------------h------HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHH
Q psy16658 148 -IR--------------------------------G------ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMA 188 (318)
Q Consensus 148 -~~--------------------------------g------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 188 (318)
.+ | ....+.++.+.++..++.++.||+|||+.+..+...+.
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~ 370 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMS 370 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Confidence 00 1 34566777788888898999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCC-CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658 189 LCLGVLGFYFYMMEDGK-DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC 267 (318)
Q Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 267 (318)
++.++++.......... ......+..+...+++...+..+..+++|.+..|.+|.+.|+++.++....++..+.+-...
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~ 450 (513)
T KOG0254|consen 371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF 450 (513)
T ss_pred HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99998887655543322 23455677788888888899999999999999999999999999999999999988877777
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHH-HhheeccCCCCCCHHHHHHHhcC
Q psy16658 268 FVFLVKNLGSAATFWIFSVICFVGTL-FTFVLVPETKGKTLNQIQRELGG 316 (318)
Q Consensus 268 ~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
...+.+..+....|..+...+.+... ..+++.||+|+++.+|.++.+++
T Consensus 451 ~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 451 FPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 77676665534677777777777777 78888999999999998887654
No 17
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.95 E-value=5.1e-26 Score=201.42 Aligned_cols=271 Identities=16% Similarity=0.163 Sum_probs=206.3
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
+.++.+...+...+.+|.+.++ +|.|+.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++..
T Consensus 14 ~~~~~~~~~~~~~~~lp~~~~~-------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~ 86 (381)
T PRK03633 14 GLLLLTLAIAVLNTLVPLWLAQ-------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999998 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------
Q psy16658 83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------------------------- 129 (318)
Q Consensus 83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------------------------- 129 (318)
.+++++|++.+++.|+++|++.+...+...+.+.|..++++|+++++
T Consensus 87 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 166 (381)
T PRK03633 87 GLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTG 166 (381)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 99999999999999999999999988888888889999999999887
Q ss_pred hhhHhHHhHHHHHHhh----c----c------cc-------------------------------------hHHHHHHHH
Q psy16658 130 GGLSAIIPMFIGEIAE----S----S------IR-------------------------------------GISAIIVGI 158 (318)
Q Consensus 130 ~~~~~~~p~~~~~~~~----~----~------~~-------------------------------------g~~~~~~~~ 158 (318)
.......+......++ + + ++ |.......+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~ 246 (381)
T PRK03633 167 LVLAAILPLLFTRILNQQAENHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVS 246 (381)
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0000111111100000 0 0 00 456667778
Q ss_pred HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658 159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG 238 (318)
Q Consensus 159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (318)
..+++++..|++.||+++|+.+..+.....++...+.. .........+.+..... ..|.......
T Consensus 247 ~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~l~g~~~~~-~~p~~~~~~~ 311 (381)
T PRK03633 247 AGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLS--------------QAAMAPALFILGAAGFT-LYPVAMAWAC 311 (381)
T ss_pred HHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 88899999999999999999888776666655443321 00111222333333222 2333436667
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHh
Q psy16658 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFT 295 (318)
Q Consensus 239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 295 (318)
|..|+++++...+..+...++|..++|.+.|.+.|+.+++..|.+.+.+.++..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 312 EKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 888888888888888888999999999999999999999888888777776554433
No 18
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.94 E-value=7.7e-26 Score=197.37 Aligned_cols=274 Identities=24% Similarity=0.375 Sum_probs=221.8
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+....+.....+.+|.+.++ ++.++.+.+++.+...++..++.+++|+++||+||||.+..+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 8 FFLSGLDRGLLSPALPLLAED-------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHhhhhhHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 345566677778888888887 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------------- 140 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------------- 140 (318)
..+.++++.+.+.|++.|++.+...+...+++.|++|+|+|++.++ .++....|.+.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888 00000001000
Q ss_pred --------------------------------------HHHhh------cccchHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy16658 141 --------------------------------------GEIAE------SSIRGISAIIVGIVQFIMTALSVVLVDKAGR 176 (318)
Q Consensus 141 --------------------------------------~~~~~------~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~ 176 (318)
+...+ +.+.+.......+...++.++.+++.||++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 240 (352)
T cd06174 161 ILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGR 240 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 1122678888899999999999999999999
Q ss_pred ee-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHH
Q psy16658 177 RI-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVA 255 (318)
Q Consensus 177 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~ 255 (318)
|+ .+..+.....++....... .+.+.......+.+.+.+.... ....+..|..|+++|++..|+.+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 308 (352)
T cd06174 241 RRLLLLIGLLLAALGLLLLALA-----------PSLALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNT 308 (352)
T ss_pred hhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHH
Confidence 99 8888888877777766652 2233445555555555555444 444888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 256 LNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 256 ~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
..+++..++|.+.+.+.|..+++..+.+.+...++..+..+
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999999999999888888777666543
No 19
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.94 E-value=2.1e-26 Score=203.87 Aligned_cols=279 Identities=16% Similarity=0.194 Sum_probs=201.4
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
+.+..+.......+.+|.+.+| +|.+.++.|++.+.+.++..++++++|+++||+|||+++..+..+.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~-------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 11 GTFGLGMAEFGIMGVLTELAHD-------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHhhHHHHHhChHHHHHH-------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 3456677777888999999988 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------hhHhHHh-------------------
Q psy16658 83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------GLSAIIP------------------- 137 (318)
Q Consensus 83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------~~~~~~p------------------- 137 (318)
++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++. +...+.|
T Consensus 84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 999999999999999999999999888888999999999999887760 0000000
Q ss_pred ----------HH--HHHHhhc-------------ccc-------------------------------------hHHHHH
Q psy16658 138 ----------MF--IGEIAES-------------SIR-------------------------------------GISAII 155 (318)
Q Consensus 138 ----------~~--~~~~~~~-------------~~~-------------------------------------g~~~~~ 155 (318)
.. .+|.+++ +++ +.....
T Consensus 164 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 243 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMML 243 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00 0111000 000 466777
Q ss_pred HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
..++.++++++.+++.||+++|+.+..+..+.+++.+++.... ...+.......+.+.+......+....
T Consensus 244 ~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~ 313 (382)
T PRK10091 244 VGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG----------GMKTASLIFAFICCAGLFALSAPLQIL 313 (382)
T ss_pred HHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8888999999999999999999988887776666655443320 111222333333333322222322323
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
...+..|++.++.+ ..+...++|..++|.+.|.+.|+ .+|+..+.+.+.++.+.........+
T Consensus 314 ~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 314 LLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred HHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555544 34677889999999999999996 57888888776666555544444333
No 20
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.94 E-value=3.6e-26 Score=208.61 Aligned_cols=286 Identities=16% Similarity=0.155 Sum_probs=192.2
Q ss_pred cccccccccccccccccccccccccccccCcCCCCCh-hHH-----HHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQ-ASL-----IGSLIAIGAIFGALPAGSIADKFGRKPVILAFCI 75 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~-~g~-----~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 75 (318)
++.++.+++.+......|.+.++ +..+.++ .++ +.++..+++.+++++.|+++||+|||+++.++.+
T Consensus 23 ~g~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 95 (490)
T PRK10642 23 LGNAMEWFDFGVYGFVAYALGKV-------FFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV 95 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34567788888888888988887 4322221 122 2577889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHH--------HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhH--
Q psy16658 76 PFIISWVLILFAKNVLM--------LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAI-- 135 (318)
Q Consensus 76 ~~~~~~~~~~~~~s~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~-- 135 (318)
+++++++++++++|++. +++.|+++|++.|..++...+++.|++|+|+|++..+ .+...+
T Consensus 96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~ 175 (490)
T PRK10642 96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175 (490)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 8899999999999999999999999999999998766 000000
Q ss_pred ------------------------HhHHH--------HH------H----hh--c------c----------cc------
Q psy16658 136 ------------------------IPMFI--------GE------I----AE--S------S----------IR------ 149 (318)
Q Consensus 136 ------------------------~p~~~--------~~------~----~~--~------~----------~~------ 149 (318)
.+.+. +| . ++ + + ++
T Consensus 176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (490)
T PRK10642 176 LISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLTC 255 (490)
T ss_pred HHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHHhHHHHHHH
Confidence 00000 10 0 00 0 0 00
Q ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHH
Q psy16658 150 ---------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGF 196 (318)
Q Consensus 150 ---------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 196 (318)
+.......++..++.++.|+++||+|||+.+..+.....+....+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 13344556667788889999999999999887765543332222111
Q ss_pred hhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658 197 YFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG 276 (318)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 276 (318)
... ............+.+...+....... .+..|.+|++.|+++.|..+.....++.++|.+.+.+.+..+
T Consensus 336 ~~~--------~~~~~~~~~~~~~~g~~~~~~~g~~~-~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~ 406 (490)
T PRK10642 336 LIN--------SNVIGLIFAGLLMLAVILNCFTGVMA-STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ 406 (490)
T ss_pred HHh--------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 100 11112222233333333333333333 566789999999999998777788888999999999988755
Q ss_pred -hhhHHHHHHHHHHHHHHHhheeccCCCC
Q psy16658 277 -SAATFWIFSVICFVGTLFTFVLVPETKG 304 (318)
Q Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
++..++.....+++..+..+ +.||+++
T Consensus 407 ~~~~~~~~~~~~~~i~~~~~~-~~pes~~ 434 (490)
T PRK10642 407 NLMMPAYYLMVVAVIGLITGV-TMKETAN 434 (490)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HhccccC
Confidence 44444444444444444333 3466544
No 21
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.94 E-value=8.9e-26 Score=201.19 Aligned_cols=261 Identities=18% Similarity=0.177 Sum_probs=196.1
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..+++.....+..|.+.++ +|.++.+.+++.+.+.++..++.++.|.++||+|||+++..+..+.+++.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~l~~~-------~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 93 (405)
T TIGR00891 21 WLLDAFDFFLVALVLAEVAGE-------FGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA 93 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 345566777778888888888 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH------------------------
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS------------------------ 133 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~------------------------ 133 (318)
++++++++.+++.|++.|++.+...+...+++.|++|+++|+++.+ .+..
T Consensus 94 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~ 173 (405)
T TIGR00891 94 CGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI 173 (405)
T ss_pred HHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 9999999999999999999999999999999999999999998888 0000
Q ss_pred hHHhHHH--------HH------H-hhc-------------c----c----------------c----------------
Q psy16658 134 AIIPMFI--------GE------I-AES-------------S----I----------------R---------------- 149 (318)
Q Consensus 134 ~~~p~~~--------~~------~-~~~-------------~----~----------------~---------------- 149 (318)
...+.+. +| . +++ + + +
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (405)
T TIGR00891 174 SILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLY 253 (405)
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 0000000 00 0 000 0 0 0
Q ss_pred -----------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCC
Q psy16658 150 -----------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKD 206 (318)
Q Consensus 150 -----------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (318)
+.......++.++++++.+++.||++||+.+..+.....+........
T Consensus 254 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------- 324 (405)
T TIGR00891 254 SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI--------- 324 (405)
T ss_pred HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh---------
Confidence 355566778888999999999999999998887765543322222111
Q ss_pred CcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHH
Q psy16658 207 VSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFW 282 (318)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 282 (318)
....+.......+.+........ ....++.|..|+++|+++.|+.+...+++..++|.+.|.+.|+.| |+..+.
T Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 325 -GANVAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred -CCchHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 01122222222333333333333 333777899999999999999999999999999999999999988 655443
No 22
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.94 E-value=4.7e-26 Score=204.02 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=216.2
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+...+..+...+.+|.+.++ ++.++.+.|++.+.+.++..+++++.|+++||+||||++..+..+.+++....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQM-------MTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence 34445566677788888877 77799999999999999999999999999999999999999888877776655
Q ss_pred HH-----HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-------------
Q psy16658 85 LF-----AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------- 140 (318)
Q Consensus 85 ~~-----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------- 140 (318)
.. .++++.+++.|+++|++.+...+...+++.|++|+++|+++.+ .+...+.|.+.
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~ 179 (417)
T PRK10489 100 ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNY 179 (417)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHH
Confidence 43 4678999999999999988888999999999999999988777 00000000000
Q ss_pred -----------------HHHhh----c---------------ccc-----------------------------------
Q psy16658 141 -----------------GEIAE----S---------------SIR----------------------------------- 149 (318)
Q Consensus 141 -----------------~~~~~----~---------------~~~----------------------------------- 149 (318)
++.++ + +++
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~ 259 (417)
T PRK10489 180 GLAAAGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALADEVWQMGAA 259 (417)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHHHhccCCChh
Confidence 11000 0 001
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHh
Q psy16658 150 --GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL 227 (318)
Q Consensus 150 --g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (318)
|.......++.+++.++.+++.||.++++.+..+..+..++.+++... .+.+.......+.+.+.+.
T Consensus 260 ~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 260 QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-----------PMWILAVLCLALFGYLSAI 328 (417)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHH
Confidence 466677788888999999999999777777777766655555444331 1122333344444443333
Q ss_pred cccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658 228 GYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
..+...+++.|..|++.|++++|+.+...++|..++|.+.|.+.|..|+...+...+.+..+...+.....+++|+++.
T Consensus 329 -~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (417)
T PRK10489 329 -SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQ 407 (417)
T ss_pred -HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 2333447778999999999999999999999999999999999999998888888877777766666666788888777
Q ss_pred HHHHHHhcC
Q psy16658 308 NQIQRELGG 316 (318)
Q Consensus 308 ~~~~~~~~~ 316 (318)
+|.|++..+
T Consensus 408 ~~~~~~~~~ 416 (417)
T PRK10489 408 TPPEVDASD 416 (417)
T ss_pred ccccCCCCC
Confidence 776665443
No 23
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.94 E-value=2.5e-25 Score=200.15 Aligned_cols=278 Identities=13% Similarity=0.106 Sum_probs=196.2
Q ss_pred cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658 12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL 91 (318)
Q Consensus 12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~ 91 (318)
......+|.+.++ +|++.++.|++.+.+.++..+++++.|++.||+|||+++.++.++.+++.++.+++++++
T Consensus 40 ~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 112 (434)
T PRK11663 40 KSFNAAMPEMLAD-------LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW 112 (434)
T ss_pred hhHHHhhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456778888887 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------hhhHh-H-H
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------------------------------GGLSA-I-I 136 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------------------------------~~~~~-~-~ 136 (318)
.+++.|++.|++.|...+...+++.|++|+|+|+++++ .+... . .
T Consensus 113 ~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~ 192 (434)
T PRK11663 113 AFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL 192 (434)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888 00000 0 0
Q ss_pred hHH--HHHH--------------------hh-c----c-----------cc-----------------------------
Q psy16658 137 PMF--IGEI--------------------AE-S----S-----------IR----------------------------- 149 (318)
Q Consensus 137 p~~--~~~~--------------------~~-~----~-----------~~----------------------------- 149 (318)
... ++|. ++ + + ++
T Consensus 193 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 272 (434)
T PRK11663 193 FLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSE 272 (434)
T ss_pred HHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0100 00 0 0 01
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658 150 ---------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS 217 (318)
Q Consensus 150 ---------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (318)
+.......+++.+++++.|++.||+ ++|+... ............+... . . .........
T Consensus 273 ~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~------~~~~~~~~~ 343 (434)
T PRK11663 273 TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F------ASYVMQAAC 343 (434)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c------ccHHHHHHH
Confidence 3455667788899999999999998 3333332 2111111111111111 0 0 011111111
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
....+.+ .............|.+|+++|+++.|+.++..++|..++|.+.|.+.|+.|++..|...+.+.++..+..+.
T Consensus 344 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 344 FFTIGFF-VFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHH-HhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 1222211 111111222455788999999999999999999999999999999999999999998888887777666655
Q ss_pred eccCCCCCC
Q psy16658 298 LVPETKGKT 306 (318)
Q Consensus 298 ~~~~~~~~~ 306 (318)
..+++++++
T Consensus 423 ~~~~~~~~~ 431 (434)
T PRK11663 423 FLNAQAPRE 431 (434)
T ss_pred HHhhhchhc
Confidence 454444433
No 24
>PRK03699 putative transporter; Provisional
Probab=99.94 E-value=7.8e-26 Score=201.07 Aligned_cols=273 Identities=11% Similarity=0.060 Sum_probs=201.9
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+..+.......+.+|.+.++ +|+|+++.+++.+.+.+++.++.+++|++.||+||||++..+..+..++.+++
T Consensus 17 ~~~~~~~~~~g~~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~ 89 (394)
T PRK03699 17 ALTGALVIVTGMVMGPIAEY-------FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL 89 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455556677788888888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------ 140 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------ 140 (318)
.++++++.+++.|+++|++.+...+...+++.|++|+|+|++.++ .+...+.|...
T Consensus 90 ~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~ 169 (394)
T PRK03699 90 MFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIG 169 (394)
T ss_pred HHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999988765 01111111110
Q ss_pred ---------------HHHhh----c-c---c----c--------------------------------------hHHHHH
Q psy16658 141 ---------------GEIAE----S-S---I----R--------------------------------------GISAII 155 (318)
Q Consensus 141 ---------------~~~~~----~-~---~----~--------------------------------------g~~~~~ 155 (318)
++.++ + + + + |.....
T Consensus 170 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 249 (394)
T PRK03699 170 LVYVAIFILTLFSEFPALGKHAPKADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSN 249 (394)
T ss_pred HHHHHHHHHHHhcCCccccccCccccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHH
Confidence 11100 0 0 0 0 355666
Q ss_pred HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
..++..+++++.+++.||+++|+.+.....+..+...++... .+.+.........+......++... +
T Consensus 250 ~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~~~~~~~~~-~ 317 (394)
T PRK03699 250 FWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT-----------DDPSHLLYAILGLGFFSSAIYTTII-T 317 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc-----------CCchHHHHHHHHHHHHHHHHHHHHH-H
Confidence 778889999999999999999998877665554443333221 1122233333444443333333323 4
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
...|..| +.+++..|......++|..++|.+.|.+.|..|++..++..+.+..++.+....
T Consensus 318 ~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 318 LGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence 5556555 346778899999999999999999999999999988888887777766554443
No 25
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.94 E-value=1.8e-25 Score=199.62 Aligned_cols=278 Identities=16% Similarity=0.175 Sum_probs=204.5
Q ss_pred ccccccccccccccccccccccccccccCcCCCCCh-----hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQ-----ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF 77 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (318)
+.++.++..+...+.+|.+.++ +|.+..+ .|++.+.+.++..++.+++|+++||+|||+++..+..+.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 94 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQ-------LGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGM 94 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHH-------hCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 3456667777888999999888 7777654 488999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH------------
Q psy16658 78 IISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF------------ 139 (318)
Q Consensus 78 ~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~------------ 139 (318)
.++.++..++++++.+++.|++.|++.+ ..+...+++.|++|+++|+++.+ .+...+.|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 173 (408)
T PRK09874 95 GIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRP 173 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999999999999999854 56778889999999999998877 0000000000
Q ss_pred -------------------HHHH----hh-c------------ccc----------------------------------
Q psy16658 140 -------------------IGEI----AE-S------------SIR---------------------------------- 149 (318)
Q Consensus 140 -------------------~~~~----~~-~------------~~~---------------------------------- 149 (318)
.+|. ++ + +++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNV 253 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0110 00 0 000
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHH
Q psy16658 150 -------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFI 222 (318)
Q Consensus 150 -------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
|....+.++...++.+..|++.||++||+.+..+.....++.+..... ...+.......+.+
T Consensus 254 ~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g 322 (408)
T PRK09874 254 SNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----------QTPLQLGILRFLLG 322 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH
Confidence 122233445566777788999999999999888776665555443331 12333344444455
Q ss_pred HHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
.+.+...+... +...+..|+++|++..++.+....+|..++|.+.|.+.++.|++..|.+.+++.++..++.+...+
T Consensus 323 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 323 AADGALLPAVQ-TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred hhhHhhHHHHH-HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333333 566677888999999999999999999999999999999999999999888888877766655443
No 26
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.4e-26 Score=192.10 Aligned_cols=272 Identities=17% Similarity=0.164 Sum_probs=204.3
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l 93 (318)
.+..+|.+.+| .++|.+|.|++.+++.+.+.++..+.|.++||.++|+.+..++++.++.++++++++|.+.+
T Consensus 48 F~~a~p~l~e~-------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~ 120 (448)
T COG2271 48 FNLAMPALIED-------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLF 120 (448)
T ss_pred HhhccHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHH
Confidence 45567888888 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH---------------------hHHH------
Q psy16658 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII---------------------PMFI------ 140 (318)
Q Consensus 94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~---------------------p~~~------ 140 (318)
.+..++.|..+|.-.|.+...+..|+|++|||+..+ .++.++. |.+.
T Consensus 121 ~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival 200 (448)
T COG2271 121 AVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVAL 200 (448)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998888 1111111 1111
Q ss_pred -------------------------HHH-hh-ccc----------------c----------------------------
Q psy16658 141 -------------------------GEI-AE-SSI----------------R---------------------------- 149 (318)
Q Consensus 141 -------------------------~~~-~~-~~~----------------~---------------------------- 149 (318)
.|. ++ +++ +
T Consensus 201 ~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~ 280 (448)
T COG2271 201 ILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLS 280 (448)
T ss_pred HHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 111 11 110 0
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658 150 ----------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS 217 (318)
Q Consensus 150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (318)
+....++-.++++|+++.|+++||+ |||....+.+.+....++...+ ..+ ..+.++..++
T Consensus 281 e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w-~~~-------~~~~~l~~~~ 352 (448)
T COG2271 281 EVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW-LAP-------NGSYLLDAIL 352 (448)
T ss_pred HhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-cCC-------CccHHHHHHH
Confidence 4778888899999999999999995 4555444333222222222211 111 1223333333
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+...++... +..-+......|..|++..|++.|+...+.++ |...+....|.+.|.+||...|.++.+.++++.++..
T Consensus 353 l~~iGf~Iy-GPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 353 LFIIGFLIY-GPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred HHHHHHHHh-hHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 333333322 22223336667999999999999999999999 8899999999999999999999998888888777766
Q ss_pred eeccC
Q psy16658 297 VLVPE 301 (318)
Q Consensus 297 ~~~~~ 301 (318)
...+.
T Consensus 432 ~~~~~ 436 (448)
T COG2271 432 PVWNA 436 (448)
T ss_pred HHHhh
Confidence 65543
No 27
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.93 E-value=4.9e-25 Score=198.22 Aligned_cols=280 Identities=19% Similarity=0.193 Sum_probs=177.4
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHH---HHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASL---IGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS 80 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~---~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (318)
.++..++........|.+.++++. .+.+..+.+. +.+...++..++++++|+++||+||||++..+..+++++
T Consensus 31 ~~~~~~d~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 31 NLVEWFDFYVYSFCSLYFAHIFFP----SGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 445567777777777888887321 1344554444 344455555599999999999999999999999999999
Q ss_pred HHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------hhhHh----H----
Q psy16658 81 WVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------GGLSA----I---- 135 (318)
Q Consensus 81 ~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~~~~~----~---- 135 (318)
++++++++++. .+++.|+++|++.|...+...+++.|++|+|+|++..+ ..... .
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 186 (432)
T PRK10406 107 SLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT 186 (432)
T ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 58899999999999999999999999999999998766 00000 0
Q ss_pred -------------------HhHHH--------HHH-----hh-cc---------cc------------------------
Q psy16658 136 -------------------IPMFI--------GEI-----AE-SS---------IR------------------------ 149 (318)
Q Consensus 136 -------------------~p~~~--------~~~-----~~-~~---------~~------------------------ 149 (318)
.+.++ +|. ++ ++ ++
T Consensus 187 ~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 266 (432)
T PRK10406 187 LEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYM 266 (432)
T ss_pred CCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 110 00 00 00
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658 150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP 214 (318)
Q Consensus 150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (318)
+....+..+...++.++.|+++||++||+.+.....+..+....+.... .. ....+..
T Consensus 267 p~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~ 339 (432)
T PRK10406 267 QKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN-----VSSPYAA 339 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc-----CCcHHHH
Confidence 2444555666777888899999999999887665444332222111100 00 0111111
Q ss_pred HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Q psy16658 215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGT 292 (318)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 292 (318)
.....+....... ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+.+ +..| +...+...+...++..
T Consensus 340 ~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~ 417 (432)
T PRK10406 340 FGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAF 417 (432)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHH
Confidence 1111111122222 1223336778999999999999999988775 344577777744 6556 4334444444445444
Q ss_pred HHhh
Q psy16658 293 LFTF 296 (318)
Q Consensus 293 ~~~~ 296 (318)
+..+
T Consensus 418 ~~~~ 421 (432)
T PRK10406 418 LVSL 421 (432)
T ss_pred HHHH
Confidence 4433
No 28
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.93 E-value=7.1e-25 Score=194.32 Aligned_cols=277 Identities=21% Similarity=0.241 Sum_probs=199.2
Q ss_pred ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658 7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
..++........|.+.++ +|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++..+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 78 (399)
T TIGR00893 6 NYLDRANLSFAAPMLQED-------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF 78 (399)
T ss_pred HHHHHHhhhHhHHHHHHh-------hCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence 344556666777887777 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH---------------------
Q psy16658 87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF--------------------- 139 (318)
Q Consensus 87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~--------------------- 139 (318)
+++++.+++.|+++|++.+...+...+++.|++|+|+|++.++ .+...+.|.+
T Consensus 79 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (399)
T TIGR00893 79 AGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLG 158 (399)
T ss_pred HcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888 0000000000
Q ss_pred --------H--H-----------HHhh----c----------------------ccc-----------------------
Q psy16658 140 --------I--G-----------EIAE----S----------------------SIR----------------------- 149 (318)
Q Consensus 140 --------~--~-----------~~~~----~----------------------~~~----------------------- 149 (318)
. + +.++ + +++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWF 238 (399)
T ss_pred HHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 0 0 0000 0 000
Q ss_pred ---------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhh-hhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658 150 ---------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLL-SDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213 (318)
Q Consensus 150 ---------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (318)
+.......+.+.++.++.+++.||++||+.... .......+............. ....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 314 (399)
T TIGR00893 239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY----VNIPYA 314 (399)
T ss_pred HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc----chhHHH
Confidence 356677778888999999999999998862211 111111111111111111110 011122
Q ss_pred HHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHH
Q psy16658 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGT 292 (318)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 292 (318)
............ +..+..+.+..|..|+++|+++.|+.+...+++..++|.+.|.+.|..| ++..+.+.+...+++.
T Consensus 315 -~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 392 (399)
T TIGR00893 315 -ALALVALGFFGL-GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGA 392 (399)
T ss_pred -HHHHHHHHHhch-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHH
Confidence 222222222222 2455566888999999999999999999999999999999999999988 8888887777766655
Q ss_pred HHhh
Q psy16658 293 LFTF 296 (318)
Q Consensus 293 ~~~~ 296 (318)
+..+
T Consensus 393 ~~~~ 396 (399)
T TIGR00893 393 LSYL 396 (399)
T ss_pred HHHH
Confidence 5443
No 29
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.93 E-value=2.7e-25 Score=203.53 Aligned_cols=268 Identities=17% Similarity=0.179 Sum_probs=198.6
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.++.+++.....+.+|.+.++ +|.++.+.+++.+.+.++..++.++.|+++||+|||+++..+..+.+++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 101 (496)
T PRK03893 29 YLLDGFDFVLITLVLTEVQGE-------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 345566777778888988888 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhh----------------------HhH
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGL----------------------SAI 135 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~----------------------~~~ 135 (318)
.+++++++.+++.|++.|++.+...+...+++.|++|+|+|+++++ .+. ...
T Consensus 102 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI 181 (496)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877 000 000
Q ss_pred HhHHH--------HH-----Hh--hc------------------------------------------------------
Q psy16658 136 IPMFI--------GE-----IA--ES------------------------------------------------------ 146 (318)
Q Consensus 136 ~p~~~--------~~-----~~--~~------------------------------------------------------ 146 (318)
.+... +| .+ ++
T Consensus 182 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (496)
T PRK03893 182 LPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAI 261 (496)
T ss_pred HHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 11100 00 00 00
Q ss_pred ------------------------------------------cc-------chHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658 147 ------------------------------------------SI-------RGISAIIVGIVQFIMTALSVVLVDKAGRR 177 (318)
Q Consensus 147 ------------------------------------------~~-------~g~~~~~~~~~~~~~~~~~g~l~d~~g~~ 177 (318)
+. -|.......++.++++++.|++.||++||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~ 341 (496)
T PRK03893 262 FISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR 341 (496)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 00 03555666777888999999999999999
Q ss_pred ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHH
Q psy16658 178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALN 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 257 (318)
+.+..+..+..+..+.+... . ....+.........+ ....+..+....++.|.+|+++|++++|+.+...
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 411 (496)
T PRK03893 342 KAYVCSLLISQLLIIPVFAI----G-----GANVWVLGLLLFFQQ-MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVG 411 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhc----c-----ccHHHHHHHHHHHHH-HHhcccchhhHHHHHhhCCHHHhhcccchhhhhh
Confidence 98877655544443322221 0 111111112222222 2222223333367789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q psy16658 258 WISAFIVTLCFVFLVKNLGSAATFWIFSVIC 288 (318)
Q Consensus 258 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 288 (318)
.+|..++|.+.|.+.|+.|++..+...+...
T Consensus 412 ~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 412 ALGGALAPILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred hHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 9999999999999999999877765554433
No 30
>PRK15075 citrate-proton symporter; Provisional
Probab=99.93 E-value=7.6e-25 Score=197.12 Aligned_cols=262 Identities=15% Similarity=0.168 Sum_probs=178.8
Q ss_pred cccccccccccccccccccccccccccccCcCCCCChhHHHH-HHH-----HHHHhhhhhhhhhhhhhhcchhHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIG-SLI-----AIGAIFGALPAGSIADKFGRKPVILAFCI 75 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~ 75 (318)
++.++..++....++..|.+.+| ++.++.+.+... +.. .+...+++++.|+++||+||||+++.+..
T Consensus 22 ~~~~~~~~d~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~ 94 (434)
T PRK15075 22 SGNFLEMFDFFLFGFYATAIAKT-------FFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence 35567778888888999999888 788777765443 222 22234788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh--------------hhH
Q psy16658 76 PFIISWVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG--------------GLS 133 (318)
Q Consensus 76 ~~~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~--------------~~~ 133 (318)
++.+++.+++++++++ .+++.|+++|++.+...+....++.|++|+|+|++.++. +..
T Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 468899999999999999999999999999999988860 000
Q ss_pred hH------------------------HhHHH------HHH----hh--c-----------ccc-----------------
Q psy16658 134 AI------------------------IPMFI------GEI----AE--S-----------SIR----------------- 149 (318)
Q Consensus 134 ~~------------------------~p~~~------~~~----~~--~-----------~~~----------------- 149 (318)
.+ .+... +|. ++ + +++
T Consensus 175 ~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (434)
T PRK15075 175 LLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAMTTVSF 254 (434)
T ss_pred HHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00 00000 110 00 0 000
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCC
Q psy16658 150 ----------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDV 207 (318)
Q Consensus 150 ----------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (318)
+....+..++++++.++.|+++||++||+.+..+............... ...
T Consensus 255 ~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~---- 328 (434)
T PRK15075 255 YLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL--VAA---- 328 (434)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH--HcC----
Confidence 2455566777888999999999999999987765443322111111110 000
Q ss_pred cccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchh
Q psy16658 208 SSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSA 278 (318)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 278 (318)
...........+.+...+. ..+..+.+..|.+|++.|+++.++.+..... ++.++|.+.+.+.|+.|++
T Consensus 329 -~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 329 -PSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred -CchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 1111111222222233332 2233336678999999999999997766665 5888999999999998853
No 31
>KOG0252|consensus
Probab=99.93 E-value=8.5e-26 Score=192.84 Aligned_cols=304 Identities=25% Similarity=0.324 Sum_probs=233.9
Q ss_pred ccccccccccccccccccccccccc-cccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTET-SVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
+-|..+++...++.+.|.+...+.. ...+-+.++...+.+..+..+|.++++++.|+++||+|||+++...++++.+++
T Consensus 49 GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t 128 (538)
T KOG0252|consen 49 GFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICS 128 (538)
T ss_pred hhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHH
Confidence 4577889999999999888776522 111233667777899999999999999999999999999999999999999999
Q ss_pred HHHHHHh-------hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------
Q psy16658 82 VLILFAK-------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------------- 129 (318)
Q Consensus 82 ~~~~~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------------- 129 (318)
+++++.. -..++...|++.|+|.|+.+|...++.+|...+++||...+
T Consensus 129 ~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe 208 (538)
T KOG0252|consen 129 ALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE 208 (538)
T ss_pred HHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh
Confidence 9888752 24788899999999999999999999999999999997776
Q ss_pred ------------------hhhHhHHhHHH--------------H-----H-------Hhhc--------c----------
Q psy16658 130 ------------------GGLSAIIPMFI--------------G-----E-------IAES--------S---------- 147 (318)
Q Consensus 130 ------------------~~~~~~~p~~~--------------~-----~-------~~~~--------~---------- 147 (318)
.+....+|.+. + + .+++ +
T Consensus 209 ~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~ 288 (538)
T KOG0252|consen 209 KIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPS 288 (538)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcc
Confidence 33333333333 0 0 0000 0
Q ss_pred cc--------------------------------------------h----------------HHHHHHHHHHHHHHHHH
Q psy16658 148 IR--------------------------------------------G----------------ISAIIVGIVQFIMTALS 167 (318)
Q Consensus 148 ~~--------------------------------------------g----------------~~~~~~~~~~~~~~~~~ 167 (318)
++ | ....+.....++|..+.
T Consensus 289 ~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~t 368 (538)
T KOG0252|consen 289 NSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFT 368 (538)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEE
Confidence 00 0 11222223333466666
Q ss_pred HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658 168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247 (318)
Q Consensus 168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 247 (318)
.++.|++|||+....++.++.+..+.+....... ....-..+...+..++...+.+.....+.+|.+|++.|+
T Consensus 369 v~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~-------~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~ 441 (538)
T KOG0252|consen 369 VYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL-------ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS 441 (538)
T ss_pred EEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc-------cccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence 7789999999999999999998888887754321 112233556666677777778888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-----HhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHh
Q psy16658 248 SATGIAVALNWISAFIVTLCFVFLVK-----NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL 314 (318)
Q Consensus 248 ~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
+..|+..+.+-.|.+++......+.+ ..|.+..+++++.++.+..+..+ ++||+++++.+|.+.+.
T Consensus 442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSLEEISNEE 512 (538)
T ss_pred hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCHHHhcChh
Confidence 99999999999999999999999999 67889999999999888766554 46799999988776544
No 32
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.93 E-value=5.1e-25 Score=196.76 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=188.3
Q ss_pred ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658 7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
..++....+...|.+.+| +|++.++.|++.+.+.+++.+++++.|++.||+||||++..+.++.+++++++++
T Consensus 20 ~~~d~~~~~~~~~~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~ 92 (412)
T TIGR02332 20 SFLDRINIGFAGLTMGKD-------LGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMF 92 (412)
T ss_pred HHhhhhhHHHHHHhhHhh-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777877777 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhH-------------------------
Q psy16658 87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAI------------------------- 135 (318)
Q Consensus 87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~------------------------- 135 (318)
++|++.+++.|+++|++.+...|....++.|++|+|+|+++++ .+...+
T Consensus 93 ~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~ 172 (412)
T TIGR02332 93 ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFL 172 (412)
T ss_pred hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHH
Confidence 9999999999999999999999999999999999999999888 000000
Q ss_pred ---HhHHH---------HHH----------hh-----------------c----c-----c--------c----------
Q psy16658 136 ---IPMFI---------GEI----------AE-----------------S----S-----I--------R---------- 149 (318)
Q Consensus 136 ---~p~~~---------~~~----------~~-----------------~----~-----~--------~---------- 149 (318)
.+.+. +|. ++ + + + +
T Consensus 173 ~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T TIGR02332 173 LEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTLAYF 252 (412)
T ss_pred HHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHHHHH
Confidence 00000 110 00 0 0 0 0
Q ss_pred -----------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehh-hhhhHHHHHHHHHHHHhhh
Q psy16658 150 -----------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILL-LLSDFVMALCLGVLGFYFY 199 (318)
Q Consensus 150 -----------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~ 199 (318)
+.......++..++.++.|+++||+++|+.. ........+.. .+...
T Consensus 253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~-- 329 (412)
T TIGR02332 253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASA-- 329 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHh--
Confidence 3455667788888999999999999977753 33322322222 11111
Q ss_pred hccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hh
Q psy16658 200 MMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SA 278 (318)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 278 (318)
. .. .........+...+... ..+..+....|.+|+++|+++.|+.+...++|++++|.+.|.+.|+.| |+
T Consensus 330 --~-----~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~ 400 (412)
T TIGR02332 330 --T-----DH-NLIQLLGIIMASMGSFS-AMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFN 400 (412)
T ss_pred --c-----CC-HHHHHHHHHHHHHHhhh-hhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCc
Confidence 0 01 11111112222222111 122233555678999999999999999999999999999999999875 87
Q ss_pred hHHHHHHHH
Q psy16658 279 ATFWIFSVI 287 (318)
Q Consensus 279 ~~~~~~~~~ 287 (318)
..+++.++.
T Consensus 401 ~~~~~~~~~ 409 (412)
T TIGR02332 401 SGLWFVAAL 409 (412)
T ss_pred hhHHHHHHH
Confidence 777665543
No 33
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.93 E-value=6.4e-25 Score=192.81 Aligned_cols=256 Identities=16% Similarity=0.110 Sum_probs=199.6
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
+.++..++.+...+.+|.+..+ ++.++.+.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~ 79 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLA-------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVA 79 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3455667777888888998888 889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------
Q psy16658 83 LILFAK-----NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------- 140 (318)
Q Consensus 83 ~~~~~~-----s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------- 140 (318)
+..+++ +++.+++.|+++|++.+...+...+++.|++|+++|++.++ .+...+.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 159 (365)
T TIGR00900 80 VLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKW 159 (365)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888 99999999999999999999999999999999999999888 00000000000
Q ss_pred ---------------------HHHhh---c------------------ccc-----------------------------
Q psy16658 141 ---------------------GEIAE---S------------------SIR----------------------------- 149 (318)
Q Consensus 141 ---------------------~~~~~---~------------------~~~----------------------------- 149 (318)
+|.++ + +++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (365)
T TIGR00900 160 AIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQS 239 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11000 0 011
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHH
Q psy16658 150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVI 219 (318)
Q Consensus 150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (318)
|.......++..++.++.+++.||.+||+.+..+....+++...+... ..+.+.......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 309 (365)
T TIGR00900 240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT----------PPNFPLFLVLWF 309 (365)
T ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------chhHHHHHHHHH
Confidence 466677788888999999999999999998887766666655554432 011334444555
Q ss_pred HHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658 220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG 276 (318)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 276 (318)
+.+.+.+.... ....+..|..|+++|+++.|+.+...+++..++|.+.|.+.|+.|
T Consensus 310 ~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 310 AIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55555554433 343778899999999999999999999999999999999998754
No 34
>PRK10504 putative transporter; Provisional
Probab=99.92 E-value=3e-24 Score=195.42 Aligned_cols=260 Identities=13% Similarity=0.125 Sum_probs=196.0
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
+.++..++....++.+|.+.++ +|.++.+.+++.+.+.++..++.+++|+++||+||||+++.+..+.+++.+
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 18 GFFMQSLDTTIVNTALPSMAQS-------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 3455666777778889999888 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------
Q psy16658 83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------- 140 (318)
Q Consensus 83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------- 140 (318)
.+.++++++.+++.|+++|++.+...+...+++.|++|+++|+++.+ .+...+.|.+.
T Consensus 91 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 91 FCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876 00000000000
Q ss_pred ---------------H----------------------------------------------------------HHhhc-
Q psy16658 141 ---------------G----------------------------------------------------------EIAES- 146 (318)
Q Consensus 141 ---------------~----------------------------------------------------------~~~~~- 146 (318)
+ |.+++
T Consensus 171 ~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (471)
T PRK10504 171 IPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNR 250 (471)
T ss_pred HHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0 00000
Q ss_pred --------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658 147 --------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILL 180 (318)
Q Consensus 147 --------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 180 (318)
+|+ |+......+...++.++.+++.||+++|+.+
T Consensus 251 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~ 330 (471)
T PRK10504 251 ALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVL 330 (471)
T ss_pred CccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 011 3555556666777778899999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658 181 LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS 260 (318)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 260 (318)
..+..+..+...++..... ....+.......+.+.+.+....+.. ....+..|++.++++.|+.++...+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g 401 (471)
T PRK10504 331 VATTLGLALVSLLFMLVAL--------LGWYYLLPFVLFLQGMVNSTRFSSMN-TLTLKDLPDNLASSGNSLLSMIMQLS 401 (471)
T ss_pred HHHHHHHHHHHHHHHhccc--------cccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCHHhccchHHHHHHHHHHH
Confidence 8887766666555443210 11122222233344444444444444 66678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchh
Q psy16658 261 AFIVTLCFVFLVKNLGSA 278 (318)
Q Consensus 261 ~~~~~~~~g~l~~~~g~~ 278 (318)
..+++.+.|.+.+..|+.
T Consensus 402 ~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 402 MSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999998887653
No 35
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.92 E-value=6.6e-29 Score=224.73 Aligned_cols=311 Identities=35% Similarity=0.634 Sum_probs=231.4
Q ss_pred cccccccccccccccccccccccccccccCc----CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNE----PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF 77 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~----~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (318)
++.+..|++.+......+..........++. +.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~ 86 (451)
T PF00083_consen 7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM 86 (451)
T ss_pred HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 3456677777777666655552211111111 113456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------
Q psy16658 78 IISWVLILFAK---NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------------- 129 (318)
Q Consensus 78 ~~~~~~~~~~~---s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------------- 129 (318)
.+++++.++++ +++.+.++|+++|++.|...+....++.|..|+++|++...
T Consensus 87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 166 (451)
T PF00083_consen 87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD 166 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 99999999999999999999999999999999999987777
Q ss_pred ------hhhHhHHhHHH--------H------------------------------H-------Hhhcc-----------
Q psy16658 130 ------GGLSAIIPMFI--------G------------------------------E-------IAESS----------- 147 (318)
Q Consensus 130 ------~~~~~~~p~~~--------~------------------------------~-------~~~~~----------- 147 (318)
.......|.+. + | .++++
T Consensus 167 ~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (451)
T PF00083_consen 167 NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFR 246 (451)
T ss_pred cccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 00011111111 0 0 00000
Q ss_pred --c---c------------------------------h-----HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH
Q psy16658 148 --I---R------------------------------G-----ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187 (318)
Q Consensus 148 --~---~------------------------------g-----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 187 (318)
+ + | .......+...++.++..++.||+|||+.+..+...+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~ 326 (451)
T PF00083_consen 247 NKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLM 326 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 1 3334555667777788889999999999999988888
Q ss_pred HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658 188 ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC 267 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 267 (318)
+++...+........+.+ .......+....+....+..+..+..+.+..|.+|++.|+++.|+....+++++.+.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~ 404 (451)
T PF00083_consen 327 AICSLILGIIFFLGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL 404 (451)
T ss_pred cccccccccccccccccc--cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 877776651111111110 111233344444555566667788888999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHh
Q psy16658 268 FVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL 314 (318)
Q Consensus 268 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
.+.+.+..+....+.+.++++.+..+..+++.|||++++.+|.++++
T Consensus 405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 99888887745678888888888888888999999999999988763
No 36
>PRK09952 shikimate transporter; Provisional
Probab=99.92 E-value=7.8e-24 Score=190.63 Aligned_cols=281 Identities=17% Similarity=0.176 Sum_probs=181.1
Q ss_pred ccccccccccccccccc-cccccccccCc-CCCCChhHHHH-----HHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPIL-TSTTETSVLNE-PVDRGQASLIG-----SLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF 77 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~-~~~~~~~~~~~-~~s~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 77 (318)
+...++......+.|.+ .+++ + +.++. .+++. ++..++..+++++.|+++||+|||+++..+..++
T Consensus 32 ~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~ 104 (438)
T PRK09952 32 VVDWYDFLLYGITAALVFNREF------FPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMM 104 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34455555555555543 3331 2 44544 45543 3455667789999999999999999999999999
Q ss_pred HHHHHHHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------h-hhH----hH
Q psy16658 78 IISWVLILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------G-GLS----AI 135 (318)
Q Consensus 78 ~~~~~~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~-~~~----~~ 135 (318)
++++++++++++++ .+++.|+++|++.|...+....++.|++|+|+|++..+ . +.. .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 105 GIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 58889999999999999999999999999999987766 0 000 00
Q ss_pred ---------------HhHHH---------------HH------Hh-h--c---c---------cc---------------
Q psy16658 136 ---------------IPMFI---------------GE------IA-E--S---S---------IR--------------- 149 (318)
Q Consensus 136 ---------------~p~~~---------------~~------~~-~--~---~---------~~--------------- 149 (318)
.++.. +| .+ + + + ++
T Consensus 185 ~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 264 (438)
T PRK09952 185 SMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELL 264 (438)
T ss_pred HHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHH
Confidence 00000 11 00 0 0 0 00
Q ss_pred -----------------h-------HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC
Q psy16658 150 -----------------G-------ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK 205 (318)
Q Consensus 150 -----------------g-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (318)
| ......+....++.++.|+++||++||+.+..+.++..++...+..... .
T Consensus 265 ~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~--- 339 (438)
T PRK09952 265 TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE--A--- 339 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--c---
Confidence 0 1222344555667778899999999999888776554443322222110 0
Q ss_pred CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--chhhHHH
Q psy16658 206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW-ISAFIVTLCFVFLVKNL--GSAATFW 282 (318)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~--g~~~~~~ 282 (318)
....+.......+.+...+..... .+++..|.+|++.|+++.|+.+.... +++.++|.+.+.+.|.. +|...+.
T Consensus 340 --~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~ 416 (438)
T PRK09952 340 --QSIFWIVFFSIMLANIAHDMVVCV-QQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAI 416 (438)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 011122222233333333333333 34778899999999999999777655 78999999999999864 3555565
Q ss_pred HHHHHHHHHHHHhheeccC
Q psy16658 283 IFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ 301 (318)
..+...+++.+..+ ..++
T Consensus 417 ~~~~~~~i~~v~~~-~~~~ 434 (438)
T PRK09952 417 YLLAGCLISAMTAL-LMKD 434 (438)
T ss_pred HHHHHHHHHHHHHH-Hccc
Confidence 55555555544443 3444
No 37
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.92 E-value=1.1e-23 Score=186.75 Aligned_cols=276 Identities=17% Similarity=0.175 Sum_probs=198.3
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-----h
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-----K 88 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~ 88 (318)
.+|+.+.+.++ |+++|++|.+++.+++.+++.+..++.|++.||+|+|+++.++.++.++.++..+++ +
T Consensus 53 ~~~l~~~~~~~------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~ 126 (462)
T PRK15034 53 FSAVTVNLNKI------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNT 126 (462)
T ss_pred HHHHHHHhhhh------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence 34555555542 299999999999999999999999999999999999999999999999999999987 8
Q ss_pred hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH----------hhhHhHHhH--------------------
Q psy16658 89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT----------GGLSAIIPM-------------------- 138 (318)
Q Consensus 89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~----------~~~~~~~p~-------------------- 138 (318)
|++.+++.|++.|++ +..++.....+++|+|+|+||++++ .+...+.|.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g 205 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADG 205 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999999998 7788999999999999999999888 100111111
Q ss_pred ---------------HH----------HHHh-hcc----------cc-----------------h---------------
Q psy16658 139 ---------------FI----------GEIA-ESS----------IR-----------------G--------------- 150 (318)
Q Consensus 139 ---------------~~----------~~~~-~~~----------~~-----------------g--------------- 150 (318)
.+ ++.+ ++. ++ |
T Consensus 206 ~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~ 285 (462)
T PRK15034 206 SVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPD 285 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 10 1100 000 00 0
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658 151 ----ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226 (318)
Q Consensus 151 ----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (318)
....+..+...+.++++|+++||+|+||++..++..+.++...+.... +.. ...+.+.............+
T Consensus 286 ~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-p~~----~~~~~~~~~~~~~~l~~~~G 360 (462)
T PRK15034 286 VNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-PGT----GSGNFIAFYAVFMGLFLTAG 360 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-ccc----cccHHHHHHHHHHHHHHHhc
Confidence 112334566778889999999999999999988877666654433221 110 01122222333333334444
Q ss_pred hcccccceeeeccccch---------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHH
Q psy16658 227 LGYGPIPWMMVGELFAP---------------------EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIF 284 (318)
Q Consensus 227 ~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 284 (318)
.+...+. .++.+.+|+ ++-|.+.|+....+.+|+++-|.+.|...+..| +...++.+
T Consensus 361 ~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~ 439 (462)
T PRK15034 361 LGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVF 439 (462)
T ss_pred ccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHH
Confidence 4444444 566666664 156889999999999999999999999988866 67778888
Q ss_pred HHHHHHHHHHhheeccCC
Q psy16658 285 SVICFVGTLFTFVLVPET 302 (318)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~ 302 (318)
.+...++..+.+.++.|+
T Consensus 440 ~~~~~~~~~~~w~~y~r~ 457 (462)
T PRK15034 440 LIFYIVCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 888888888777665443
No 38
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.92 E-value=7.5e-24 Score=188.16 Aligned_cols=261 Identities=18% Similarity=0.218 Sum_probs=188.8
Q ss_pred ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy16658 13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLM 92 (318)
Q Consensus 13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~ 92 (318)
...+.+|.+.++ +|.++++.++..+.+.++..+++++.|++.||+||||++..+..+.+++.+.+.++++++.
T Consensus 38 ~~~~~l~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (394)
T PRK10213 38 LPVSLLTPMAQD-------LGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL 110 (394)
T ss_pred HHHhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH
Confidence 445567888777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH----------------------------
Q psy16658 93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM---------------------------- 138 (318)
Q Consensus 93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~---------------------------- 138 (318)
+++.|+++|++.+...+...+++.|++|+|+|+++.+ .+...+.|.
T Consensus 111 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~ 190 (394)
T PRK10213 111 LLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW 190 (394)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888 000000000
Q ss_pred HH---HHHhhcc------------cc--------------------------------------hHHHHHHHHHHHHHHH
Q psy16658 139 FI---GEIAESS------------IR--------------------------------------GISAIIVGIVQFIMTA 165 (318)
Q Consensus 139 ~~---~~~~~~~------------~~--------------------------------------g~~~~~~~~~~~~~~~ 165 (318)
.. +|.++++ ++ |......+++..++.+
T Consensus 191 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~ 270 (394)
T PRK10213 191 IIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTS 270 (394)
T ss_pred HHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 00 1110000 00 4666777788899999
Q ss_pred HHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhh
Q psy16658 166 LSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEV 245 (318)
Q Consensus 166 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (318)
+.+++.||.+ |+.+..+..........+... ....+.......+.+.++........ +.+.+..| ++
T Consensus 271 ~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~G~~~~~~~~~~~-~~~~~~~~-~~ 337 (394)
T PRK10213 271 LSSFILKRSV-KLALAGAPLVLAVSALVLTLW----------GSDKIVATGVAIIWGLTFALVPVGWS-TWITRSLA-DQ 337 (394)
T ss_pred HHHHHHhccc-hhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHCc-cc
Confidence 9999999954 444333333322222222211 11233444455555655554444344 56667676 44
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658 246 KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL 293 (318)
Q Consensus 246 r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 293 (318)
+++..+......++|..+||.+.|.+.|+.|++..+...+.+..+..+
T Consensus 338 ~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 338 AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 667888888888999999999999999998887766665555544433
No 39
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.92 E-value=5.2e-24 Score=186.90 Aligned_cols=264 Identities=14% Similarity=0.127 Sum_probs=171.2
Q ss_pred ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658 11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV 90 (318)
Q Consensus 11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~ 90 (318)
.....|.+|.+.+| +|+|+++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......+|+
T Consensus 7 ~~~~~~~lp~i~~~-------~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 79 (368)
T TIGR00903 7 WVTFSPVLSLVAED-------IDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY 79 (368)
T ss_pred HHHHHhhHHHHHHH-------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence 34567889999998 99999999999999999999999999999999999988766655554443323333799
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhH---
Q psy16658 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPM--- 138 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~--- 138 (318)
+.+++.|+++|++.+. .+.....++|++|+|+|+++++ ......++.
T Consensus 80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 9999999999999986 4566667799999999999988 000001110
Q ss_pred -----HHHHHhh---------c---------ccc------------------------------h---HHHHHHHHHHHH
Q psy16658 139 -----FIGEIAE---------S---------SIR------------------------------G---ISAIIVGIVQFI 162 (318)
Q Consensus 139 -----~~~~~~~---------~---------~~~------------------------------g---~~~~~~~~~~~~ 162 (318)
.++|..+ + +++ | .......+....
T Consensus 159 ~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~ 238 (368)
T TIGR00903 159 ILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILA 238 (368)
T ss_pred HHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 0122110 0 011 1 001122233334
Q ss_pred HHHHHHHHhhccCCe---ehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658 163 MTALSVVLVDKAGRR---ILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG 238 (318)
Q Consensus 163 ~~~~~g~l~d~~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (318)
+.+..+++.||..|| +... ......++....+... ...+.......+.+.+....+ +..+++.+
T Consensus 239 g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 306 (368)
T TIGR00903 239 GLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE-----------LNRLALFAFIGIAGLLMLPAY-AIIMDWIG 306 (368)
T ss_pred HHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc-----------cccHHHHHHHHHHHHhhhhhH-HHHHHHHH
Confidence 445567888887654 2222 1222222222222210 112222223333333332222 33447888
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +.+..|.+++...+++.+...
T Consensus 307 ~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 307 KFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988873 666777777777777666553
No 40
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-23 Score=179.41 Aligned_cols=275 Identities=20% Similarity=0.270 Sum_probs=214.5
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH---
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV--- 90 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~--- 90 (318)
..++.+.+.+| +++|++|.+++.+...+...+..++.|.+.||+|.|++...+.++..+.++..+++.++
T Consensus 33 ~s~l~~~i~~~-------~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~ 105 (417)
T COG2223 33 FSPLGVFIKSD-------FGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST 105 (417)
T ss_pred HHHHHhhhccc-------cCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 34555666655 99999999999999999999999999999999999999999999999999999998654
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH---------hhhHhHHhHHH---------------------
Q psy16658 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------GGLSAIIPMFI--------------------- 140 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------~~~~~~~p~~~--------------------- 140 (318)
+++++.+.+.|++ |..+.+.++.+++|+|||++|.+++ .+.....|.+.
T Consensus 106 ~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 106 WQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5999999999998 8888999999999999999999999 11111222211
Q ss_pred ------------HHHhh-------------cccc--------------------------------------hHHHHHHH
Q psy16658 141 ------------GEIAE-------------SSIR--------------------------------------GISAIIVG 157 (318)
Q Consensus 141 ------------~~~~~-------------~~~~--------------------------------------g~~~~~~~ 157 (318)
+|.++ .+++ |.......
T Consensus 185 ~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~ 264 (417)
T COG2223 185 AAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFP 264 (417)
T ss_pred HHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 22111 0011 57778888
Q ss_pred HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeee
Q psy16658 158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMV 237 (318)
Q Consensus 158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (318)
+.+.+.++++|+++||+|.+|++...+..++++..++........+ ..................+.+...+. ..+
T Consensus 265 ~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~l~~~~G~GnGsvf-k~I 339 (417)
T COG2223 265 LIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----GGSFVVFVAVFLALFVFAGLGNGSVF-KMI 339 (417)
T ss_pred HHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc----CcchHHHHHHHHHHHHHhccCcchhe-eec
Confidence 9999999999999999999999998888888888777764322221 12233334444445555555555555 777
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
...+|++ .|.+.|+...++.+|+..-|...+...|..| +...|+++.....++.++.+....+.
T Consensus 340 p~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 340 PVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred hHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777764 6999999999999999999999999999988 88889988888888877766655443
No 41
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.92 E-value=1.5e-23 Score=187.25 Aligned_cols=262 Identities=16% Similarity=0.092 Sum_probs=191.1
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+...+..+...|.+|.+.++ ++.++.+.++..+.+.++..++.++.|+++||+||||++..+..+..++.+..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 23 FATYIANDMIQPGMLAVVED-------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI 95 (406)
T ss_pred HHHHhhhhhHhcchHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 33445667778888888887 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------ 140 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------ 140 (318)
.++++++.+++.|+++|++.+...+...+.+.|++|+++|.+..+ .....+.|.+.
T Consensus 96 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 96 LLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred HHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 999999999999999999999888889999999999999887666 00001111110
Q ss_pred -------------HHHh----hc--------------ccc--------------------------------------hH
Q psy16658 141 -------------GEIA----ES--------------SIR--------------------------------------GI 151 (318)
Q Consensus 141 -------------~~~~----~~--------------~~~--------------------------------------g~ 151 (318)
+|.+ ++ +++ |.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~ 255 (406)
T PRK15402 176 LAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGL 255 (406)
T ss_pred HHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHH
Confidence 1110 00 001 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP 231 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
......++..++.++.+++.||+++|+.+..+.....++...+....... ....++......+.+.+.+....+
T Consensus 256 ~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~g~g~~~~~~~ 329 (406)
T PRK15402 256 LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS------SHAYLWLTAGLSLYAFGIGLANAG 329 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc------cccHHHHHHHHHHHHHHHHHHhhh
Confidence 33444556778889999999999999988887776666665554432111 112333344455555555544333
Q ss_pred cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHH
Q psy16658 232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATF 281 (318)
Q Consensus 232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 281 (318)
.. ... ...++++|+++.+..+.....+..+++.+.+.+.+..++....
T Consensus 330 ~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 377 (406)
T PRK15402 330 LY-RLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFN 377 (406)
T ss_pred HH-HHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHH
Confidence 32 232 2334578999999999999999999999999998887754433
No 42
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.92 E-value=1.2e-23 Score=185.70 Aligned_cols=274 Identities=16% Similarity=0.164 Sum_probs=193.5
Q ss_pred cccccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHH-HHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVIL-AFCIPFIIS 80 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~ 80 (318)
..+..++..+...|.+|.+. ++ +|.++.+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~ 77 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEE-------VRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA 77 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 34667788888899999864 45 8999999999999999999999999999999999998755 466666777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHH--H------hhhHhHHhHH-------------
Q psy16658 81 WVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVA--T------GGLSAIIPMF------------- 139 (318)
Q Consensus 81 ~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~--~------~~~~~~~p~~------------- 139 (318)
.++++++++++.+++.|+++|.+.+...|...++..|+.|+++|++.+ + .+...+.|.+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 888899999999999999999888888888888999999888776431 2 0000000000
Q ss_pred ------------------HHHHhhc--------------ccc--------------------------------------
Q psy16658 140 ------------------IGEIAES--------------SIR-------------------------------------- 149 (318)
Q Consensus 140 ------------------~~~~~~~--------------~~~-------------------------------------- 149 (318)
.+|.+++ +++
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLA 237 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence 1111000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|...........++.++.|++.||++||+.+..+.....+....+... .+.+.......+.+.+.+...
T Consensus 238 g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~g~~~ 306 (375)
T TIGR00899 238 GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD-----------NSLWALLMLQLLNAIFIGILA 306 (375)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 234444445566778889999999999998877655544433332221 112233333334444444333
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+....+..|..|++ ++++.++.+...++|..++|.+.|.+.|..|++..+.+.+...+++.++..
T Consensus 307 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 307 -GIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred -HHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 33336667877765 679999999999999999999999999999998888888777766655543
No 43
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.92 E-value=9.7e-24 Score=192.82 Aligned_cols=257 Identities=16% Similarity=0.112 Sum_probs=198.0
Q ss_pred cccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
++.++..++....+..+|.+.+| +|.+.++.+|+.+.+.++.....+++|+++||+|||++++.+..+..+++
T Consensus 13 ~~~~~~~ld~tiv~~a~p~i~~~-------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~ 85 (495)
T PRK14995 13 LVYIPVAIDATVLHVAAPTLSMT-------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLAS 85 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34566778888889999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH------hhhHhHHhHHH--------------
Q psy16658 82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT------GGLSAIIPMFI-------------- 140 (318)
Q Consensus 82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~~~~~~~p~~~-------------- 140 (318)
+.+++++|++.++++|+++|++.+...+.....+.+++ |+|+|+++++ .+...+.|.+.
T Consensus 86 ~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 86 LAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 99999999999999999999999998888888887776 7789998887 00000111100
Q ss_pred -----------------HH-----------------------------------------------------------Hh
Q psy16658 141 -----------------GE-----------------------------------------------------------IA 144 (318)
Q Consensus 141 -----------------~~-----------------------------------------------------------~~ 144 (318)
++ .+
T Consensus 166 i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~ 245 (495)
T PRK14995 166 INVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLA 245 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 00
Q ss_pred hc---------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658 145 ES---------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR 177 (318)
Q Consensus 145 ~~---------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~ 177 (318)
.+ +++ |.......+...++.++.|++.||+++|
T Consensus 246 ~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~ 325 (495)
T PRK14995 246 ASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR 325 (495)
T ss_pred CCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 00 000 4556666778888999999999999999
Q ss_pred ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHH
Q psy16658 178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALN 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 257 (318)
+.+..+..+..++...+..... ....+.......+.+.+.+....+.. ....+..|+++++.+.++.++..
T Consensus 326 ~~~~~g~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~ 396 (495)
T PRK14995 326 LVATGGMALSALSFYGLAMTDF--------STQQWQAWGLMALLGFSAASALLAST-SAIMAAAPPEKAAAAGAIETMAY 396 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhHHHHHHHHH-HHHHhcCCHHhcchHHHHHHHHH
Confidence 8887777666666554433210 11123334455566666666555555 55667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16658 258 WISAFIVTLCFVFLVKN 274 (318)
Q Consensus 258 ~~g~~~~~~~~g~l~~~ 274 (318)
++|+.+|+.+.+.+.++
T Consensus 397 ~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 397 ELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 44
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.92 E-value=5.4e-23 Score=186.01 Aligned_cols=267 Identities=13% Similarity=0.109 Sum_probs=181.8
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhccccc
Q psy16658 33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK----NVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~ 108 (318)
|.+..+.+++.+.+.++..++++++|+++||+|||++++.+..+.+++.+.+++++ +++.+++.|++.|++.+...
T Consensus 59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999888764 78889999999999999988
Q ss_pred cccchhhhhccCchhhhHHHH------hhhHhH-HhHH-------------------------------HH---HH----
Q psy16658 109 AIIPMFIGEIAESSIRAGVAT------GGLSAI-IPMF-------------------------------IG---EI---- 143 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~r~~~~~------~~~~~~-~p~~-------------------------------~~---~~---- 143 (318)
+.....+.|++|+|+|+++++ .++... .|.. .+ +.
T Consensus 139 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (452)
T PRK11273 139 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP 218 (452)
T ss_pred hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC
Confidence 888889999999999998887 000000 0100 01 10
Q ss_pred -----h----------hc--------------ccc--------------------------------------hHHHHHH
Q psy16658 144 -----A----------ES--------------SIR--------------------------------------GISAIIV 156 (318)
Q Consensus 144 -----~----------~~--------------~~~--------------------------------------g~~~~~~ 156 (318)
+ ++ +++ +....+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~ 298 (452)
T PRK11273 219 PIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 298 (452)
T ss_pred ChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00 001 2445566
Q ss_pred HHHHHHHHHHHHHHhhccC--Ceehhhh-hhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658 157 GIVQFIMTALSVVLVDKAG--RRILLLL-SDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP 233 (318)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~g--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
.++.+++.++.|+++||++ ||+.... ...+..++...+.. .. ....+.........+.... ......
T Consensus 299 ~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~--~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~ 368 (452)
T PRK11273 299 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL--NP-------AGNPTVDMACMIVIGFLIY-GPVMLI 368 (452)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH--hc-------ccChHHHHHHHHHHHHHHH-hHHHHH
Confidence 7778889999999999984 4443222 11111222211111 00 0111222222222222211 111112
Q ss_pred eeeeccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHH
Q psy16658 234 WMMVGELFAPEVKGSATGIAVALNWISAFI-VTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQI 310 (318)
Q Consensus 234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
.....|.+|++.|+++.|+.+...++++.+ +|.+.|.+.|+.|++..|++.++.++++.+....+. +.++|+.+|.
T Consensus 369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 445 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM-IGEKRHHEEL 445 (452)
T ss_pred HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh-ccccchHHHH
Confidence 245568999999999999999999998765 799999999999999999888887777766655433 3333443333
No 45
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.91 E-value=1.4e-23 Score=186.62 Aligned_cols=255 Identities=21% Similarity=0.255 Sum_probs=181.5
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
..+.....+.+|.+.++ +|.++++.++..+.+.++..+++++.|+++||+||||.+..+..+..++......+
T Consensus 16 ~~~~~~~~~~lp~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~ 88 (392)
T PRK10473 16 PAGIDMYLVGLPRIAAD-------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHhhhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence 33445556788988888 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------------
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI--------------------- 140 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~--------------------- 140 (318)
++++.+++.|+++|++.+...+...+++.|++|+++|++..+ .+...+.|.+.
T Consensus 89 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~ 168 (392)
T PRK10473 89 ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI 168 (392)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence 999999999999999999989999999999999999998877 00001111110
Q ss_pred ----------HHHhhc----------------ccc--------------------------------------hHHHHHH
Q psy16658 141 ----------GEIAES----------------SIR--------------------------------------GISAIIV 156 (318)
Q Consensus 141 ----------~~~~~~----------------~~~--------------------------------------g~~~~~~ 156 (318)
+|.+++ +++ |......
T Consensus 169 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 248 (392)
T PRK10473 169 LVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALT 248 (392)
T ss_pred HHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHH
Confidence 111100 000 3556667
Q ss_pred HHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658 157 GIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM 236 (318)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (318)
++..+++.++.+++.||++||+.+..+.....++...+.... ..+.......+...+....... ..
T Consensus 249 ~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~g~~~~~~~---~~ 314 (392)
T PRK10473 249 AGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSP-----------SHAVSLFGITLICAGFSVGFGV---AM 314 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHH---HH
Confidence 788889999999999999999998888777666666555421 1112222223333333322222 12
Q ss_pred eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658 237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV 286 (318)
Q Consensus 237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 286 (318)
..+..|.++|+ |..+.....+..+++.+.+.+.++.|+.......+.
T Consensus 315 ~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 315 SQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 23444554443 455566677888888888888888887544444333
No 46
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.91 E-value=8.1e-24 Score=193.22 Aligned_cols=258 Identities=15% Similarity=0.163 Sum_probs=199.9
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
+.++..++....++.+|.+.++ +|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGD-------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3455667778888899999988 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh-------------------
Q psy16658 83 LILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP------------------- 137 (318)
Q Consensus 83 ~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p------------------- 137 (318)
.+++++|++.+++.|+++|++.+...+...+++.|++|+|+|+++.+ .+...+.|
T Consensus 83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 99999999999999999999999999999999999999999999888 00000000
Q ss_pred ------------HHHHH------------------------------------------------------------Hhh
Q psy16658 138 ------------MFIGE------------------------------------------------------------IAE 145 (318)
Q Consensus 138 ------------~~~~~------------------------------------------------------------~~~ 145 (318)
...+| .++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTD 242 (485)
T ss_pred hHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00000 000
Q ss_pred cc---------cc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCee
Q psy16658 146 SS---------IR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRI 178 (318)
Q Consensus 146 ~~---------~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 178 (318)
++ ++ |.......++..++.++.|++.||++||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 322 (485)
T TIGR00711 243 DNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK 322 (485)
T ss_pred CCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH
Confidence 00 00 46667777888999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH
Q psy16658 179 LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 258 (318)
.+..+.....++...+...... ....+.......+.+.+.+....+.. ....+..|+++|+++.|+.+....
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 394 (485)
T TIGR00711 323 LVTIGLILYAVGFYWRAFTFTP-------DTPFLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSLSNFTRQ 394 (485)
T ss_pred HHHHHHHHHHHHHHHHhccCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHH
Confidence 9888877766666655421110 11223334445555555555444554 445577899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy16658 259 ISAFIVTLCFVFLVKNL 275 (318)
Q Consensus 259 ~g~~~~~~~~g~l~~~~ 275 (318)
+|+.+++.+.+.+.++.
T Consensus 395 ~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 395 LGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 47
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.91 E-value=4.2e-23 Score=184.06 Aligned_cols=277 Identities=14% Similarity=0.138 Sum_probs=192.8
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+......+...+.+|.+.+| +|.++++.|++.+.+.++..++.++.|++.||+||||++..+..+..++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~ 95 (402)
T TIGR00897 23 VVFMTGDGLEQGWLSPFLKA-------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF 95 (402)
T ss_pred HHHHHhhhhHHHhHHHHHHH-------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 33444445555667777766 89999999999999999999999999999999999999999999998887765
Q ss_pred H---H-HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH-hHHhHHH-------------
Q psy16658 85 L---F-AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS-AIIPMFI------------- 140 (318)
Q Consensus 85 ~---~-~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~-~~~p~~~------------- 140 (318)
. . .++++.+++.|+++|++.+...+...+.+.|++|+|+|+++++ .+.. ...|.+.
T Consensus 96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~ 175 (402)
T TIGR00897 96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTL 175 (402)
T ss_pred HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 3 2 3578889999999999988888888888999999999999988 1110 0111110
Q ss_pred ------------------HHH-----hhc---------------ccc---------------------------------
Q psy16658 141 ------------------GEI-----AES---------------SIR--------------------------------- 149 (318)
Q Consensus 141 ------------------~~~-----~~~---------------~~~--------------------------------- 149 (318)
++. +++ +++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s 255 (402)
T TIGR00897 176 WSALAFVLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFS 255 (402)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 110 000 011
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhccCCeehhh-hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658 150 ----GISAIIVGIVQFIMTALSVVLVDKAGRRILLL-LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM 224 (318)
Q Consensus 150 ----g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
+.......+++.++++..|++.||++||+.+. .+.+...++...+....... ....+.......+.+..
T Consensus 256 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~G~~ 329 (402)
T TIGR00897 256 TSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF------GHSFAVALIIAIALGIF 329 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHHH
Confidence 24445566788999999999999999888764 22222333222222111000 01123333344444444
Q ss_pred HHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 225 FSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
... ..+.. ....|. +|++|+++.|+.+...++++.++|.+.|.+.|..|+...+++.+++.++..++..+
T Consensus 330 ~~~-~~~~~-~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 330 LAG-YVPLA-AVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHH-HHHHH-HHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 23333 444565 45679999999999999999999999999999999988888888777766655543
No 48
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.91 E-value=3.6e-23 Score=183.32 Aligned_cols=254 Identities=18% Similarity=0.195 Sum_probs=185.8
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (318)
....+.....|.+|.+.++ +|.++++.+++.+.+.++..++++++|+++||+||||++..+..+..++.+...
T Consensus 16 ~~~~~~~~~~~~~p~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 16 LGPLGIDMYLPAFPEIAAD-------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred HHHHHHHHhcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 3455667788889998888 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-------------------
Q psy16658 86 FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------- 140 (318)
Q Consensus 86 ~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------- 140 (318)
++++++.+++.|++.|++.+...+...+++.|++|+|+|++..+ .+...+.|.+.
T Consensus 89 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 89 LSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred HHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888 00000001000
Q ss_pred ------------HHHhhc-----------------ccc--------------------------------------hHHH
Q psy16658 141 ------------GEIAES-----------------SIR--------------------------------------GISA 153 (318)
Q Consensus 141 ------------~~~~~~-----------------~~~--------------------------------------g~~~ 153 (318)
+|.+++ +++ |...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 248 (385)
T TIGR00710 169 GILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLF 248 (385)
T ss_pred HHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHH
Confidence 111000 000 4566
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP 233 (318)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
....+..+++.++.+++.||+++|+.+..+.....++..++....... ............+.+.+.+.......
T Consensus 249 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~ 322 (385)
T TIGR00710 249 ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG------LGSWAMIIGPMMFVGIGNSMISSIAM 322 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788899999999999999999988877766666655554421111 01111222233344444444333333
Q ss_pred eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
....|..| ++|+++.++.+...+.++.+.+.+.+.+.+.
T Consensus 323 -~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~ 361 (385)
T TIGR00710 323 -AYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGN 361 (385)
T ss_pred -HHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55567666 5689999999999887666666666644433
No 49
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.91 E-value=1.6e-23 Score=184.84 Aligned_cols=262 Identities=16% Similarity=0.138 Sum_probs=186.3
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+...++....++.+|.+.++ +|.+..+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 5 AAYYLVRKNFALAMPYLVEE-------IGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hHHHHhHHhhhhhhHHHHHH-------hCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence 34445566677788888877 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH-HH-----------------
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM-FI----------------- 140 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~-~~----------------- 140 (318)
.++++++.+++.|++.|++.+...+...+++.|++|+|+|++.++ .+...+.|. ..
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (379)
T TIGR00881 78 GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPG 157 (379)
T ss_pred HHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 999999999999999999999999999999999999999988776 111111110 00
Q ss_pred --------------HHHh-------------hc------------c-----------cc---------------------
Q psy16658 141 --------------GEIA-------------ES------------S-----------IR--------------------- 149 (318)
Q Consensus 141 --------------~~~~-------------~~------------~-----------~~--------------------- 149 (318)
+|.. ++ + ++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (379)
T TIGR00881 158 IIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD 237 (379)
T ss_pred HHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00 0 00
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658 150 -----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF 212 (318)
Q Consensus 150 -----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (318)
+.......+...+++++.+++.||..+|+...............+....... ....+
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 311 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP------AANPL 311 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc------chhHH
Confidence 3566677788889999999999986433322222111111111111110000 01112
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Q psy16658 213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAAT 280 (318)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 280 (318)
.........+... .+..+.......|..|+++|+++.|+.+....++..++|.+.|.+.|+.||+..
T Consensus 312 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 312 MDLICLFALGFLV-YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHHHHHHH-hhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 2222233333222 222223335678999999999999999999999999999999999999988654
No 50
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.91 E-value=3.5e-23 Score=183.79 Aligned_cols=268 Identities=13% Similarity=0.052 Sum_probs=188.9
Q ss_pred ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658 7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
..++.......++.+.+| ++.++.+.+++.+.+.+++.+..+++|+++||+||||+++++..+.+++++.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~ 87 (393)
T PRK11195 15 SALADNALLFAAIALLKE-------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLF 87 (393)
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHH
Confidence 333333344445555566 7888999999999999999999999999999999999999999999999888887
Q ss_pred HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH----------------------
Q psy16658 87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM---------------------- 138 (318)
Q Consensus 87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~---------------------- 138 (318)
+++. ++.|+++|++.+...|+..+++.|++|+|+|+++++ .....+.|.
T Consensus 88 ~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~ 164 (393)
T PRK11195 88 GIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYL 164 (393)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7764 678999999999999999999999999999999998 000000000
Q ss_pred -------HHHHHh---h---c-----------------ccc--------------------------------------h
Q psy16658 139 -------FIGEIA---E---S-----------------SIR--------------------------------------G 150 (318)
Q Consensus 139 -------~~~~~~---~---~-----------------~~~--------------------------------------g 150 (318)
.++|.+ + + +++ |
T Consensus 165 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G 244 (393)
T PRK11195 165 LAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPA 244 (393)
T ss_pred HHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH
Confidence 001100 0 0 000 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
......+++.+++.+..+++.||.++|+.+..+.. .++....+... .+.+.......+.+.+.+....
T Consensus 245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-----------~~~~~~~~~~~~~G~~~g~~~~ 312 (393)
T PRK11195 245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ-----------HSLLPAYPLLILIGALGGFFVV 312 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH-----------hHHHHHHHHHHHHHHhhhhhhh
Confidence 66777778888999999999999888887766643 23322222221 1233334444455555555455
Q ss_pred ccceeeeccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 231 PIPWMMVGELFAPEV-KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+.. +...|..|++. +|++.++.+...+++..++..+.+.+ +..|-+..+.+.+...+.+..+.+.+
T Consensus 313 ~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 313 PMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred hHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 555 56667666654 79999999999999999999998855 67787777766555555555544443
No 51
>PRK10054 putative transporter; Provisional
Probab=99.91 E-value=4.3e-23 Score=183.38 Aligned_cols=275 Identities=16% Similarity=0.200 Sum_probs=196.1
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.++.....+...|.+|.+.++. +|+++.++|++.+.+.++..+.+++.|+++||+|||+++..+.++..++.+.
T Consensus 16 ~~~~~~g~~~~~~~l~~~l~~~------~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~ 89 (395)
T PRK10054 16 SLLLTIGRGATLPFMTIYLSRQ------YSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIA 89 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHH
Confidence 3455566677778887766442 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------------hh-
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------------GG- 131 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------------~~- 131 (318)
.+++++++.+++.|++.|.+.+...+...++..|..|+++|+++++ ..
T Consensus 90 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~ 169 (395)
T PRK10054 90 IPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAI 169 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 9999999999999999998888788889999999999999999877 00
Q ss_pred --hHhHHhH--HHHHHhh----c-----------ccc----------------------------------------hHH
Q psy16658 132 --LSAIIPM--FIGEIAE----S-----------SIR----------------------------------------GIS 152 (318)
Q Consensus 132 --~~~~~p~--~~~~~~~----~-----------~~~----------------------------------------g~~ 152 (318)
....+.. ..++.++ + +++ |..
T Consensus 170 ~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 249 (395)
T PRK10054 170 CSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVV 249 (395)
T ss_pred HHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHH
Confidence 0000111 0111110 0 011 123
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
.....+.........+++.||.++|+.+..+.....++...+... ..+.+.......+.+.+... ..|.
T Consensus 250 ~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~-~~p~ 318 (395)
T PRK10054 250 LPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS----------GNSLLLWGMSAAVFTVGEII-YAPG 318 (395)
T ss_pred HHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc----------chHHHHHHHHHHHHHHHHHH-HHhh
Confidence 333333334455677888999999998887776666665554431 11122233344444444433 2334
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
....+.+..|++.|+++.+..+ ...+|..+||.+.|.+.|+.|+...+++.+....+..++..
T Consensus 319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 4467788899999999988755 67789999999999999999987777776655555444443
No 52
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.90 E-value=3e-22 Score=179.06 Aligned_cols=283 Identities=13% Similarity=0.056 Sum_probs=192.1
Q ss_pred ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHHHHHHH
Q psy16658 9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGR-KPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~ 87 (318)
...+...|.++.+..+ ++|.+.+|+|++.+.+.++..++++++|+++||+|| |+++.++.++..+...+..+.
T Consensus 16 ~~~~~~~~~l~~~l~~------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~ 89 (418)
T TIGR00889 16 FIWGSWLVTLGSYMSK------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV 89 (418)
T ss_pred HHHHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 3444554445444433 289999999999999999999999999999999965 778888888888888888899
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhh--------hccCchhhhHHHHhhhHhHHhHHH-------------------
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIG--------EIAESSIRAGVATGGLSAIIPMFI------------------- 140 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~p~~~------------------- 140 (318)
++++.+.+.|++.|++.+...+...++.. |......|.|..+.++..+.|.+.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~~~~~~~~f~~~~~~~ 169 (418)
T TIGR00889 90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLDIELSNIQLYITAGSS 169 (418)
T ss_pred cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999999987777666655432 222223344444411111111000
Q ss_pred ----------HHHh---h-c----------------ccc-----------------------------------------
Q psy16658 141 ----------GEIA---E-S----------------SIR----------------------------------------- 149 (318)
Q Consensus 141 ----------~~~~---~-~----------------~~~----------------------------------------- 149 (318)
+|.+ + + +++
T Consensus 170 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 249 (418)
T TIGR00889 170 ALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFV 249 (418)
T ss_pred HHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhh
Confidence 1110 0 0 000
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHH
Q psy16658 150 ----GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMF 225 (318)
Q Consensus 150 ----g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (318)
|....+..+..+++.+..+++.||+|+|+.+..+.+...++...+.... . .....+.......+.+...
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~---~----~~~~~~~l~l~~~l~g~~~ 322 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD---P----EYFGYALLFLSMIVYGCAF 322 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC---c----chhhHHHHHHHHHHHHHHH
Confidence 1222334455667788999999999999999988887777655554410 0 0001122333444555554
Q ss_pred HhcccccceeeeccccchhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh------chhhHHHHHHHHHHHHHHHhhee
Q psy16658 226 SLGYGPIPWMMVGELFAPEVKGSATGIAV-ALNWISAFIVTLCFVFLVKNL------GSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+....... .++.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|+. ||+..|.+.++...+..++.+++
T Consensus 323 ~~~~~~~~-~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~ 401 (418)
T TIGR00889 323 DFFNISGS-VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIF 401 (418)
T ss_pred HHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333 67789999999999999997 567899999999999999984 57888888888877777777777
Q ss_pred ccCCCCC
Q psy16658 299 VPETKGK 305 (318)
Q Consensus 299 ~~~~~~~ 305 (318)
.+|++++
T Consensus 402 ~~~~~~~ 408 (418)
T TIGR00889 402 FKYSHNA 408 (418)
T ss_pred hCCcccC
Confidence 7766443
No 53
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.90 E-value=1.2e-22 Score=180.69 Aligned_cols=269 Identities=12% Similarity=0.079 Sum_probs=186.0
Q ss_pred cccccccccccccccccc-ccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILT-STTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~-~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
++.........|.+|.+. ++ +|.+..+.|++.+...++..+..++.|+++||+|||+++..+..+..++.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 20 MLVVLGFFVVFPLISIRFVDQ-------LGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 344555566677777654 44 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh--------------------
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP-------------------- 137 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p-------------------- 137 (318)
+.++++++.+++.|+++|++.+...|...+++.|++|+|+|+++++ .+...+.|
T Consensus 93 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~ 172 (400)
T PRK11646 93 MAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAV 172 (400)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999998888999999999999999999988 00000000
Q ss_pred ----------HHHHHHhhc--------------ccc-------------------------------------hHHHHHH
Q psy16658 138 ----------MFIGEIAES--------------SIR-------------------------------------GISAIIV 156 (318)
Q Consensus 138 ----------~~~~~~~~~--------------~~~-------------------------------------g~~~~~~ 156 (318)
...+|.+++ +++ |......
T Consensus 173 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~ 252 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIE 252 (400)
T ss_pred HHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHH
Confidence 000111000 001 2333344
Q ss_pred HHHHHHHHHHHHHHhh-ccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 157 GIVQFIMTALSVVLVD-KAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 157 ~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
++.........+++.| |++.++.+..+.....++...+... ++.+.......+.+.+.....++.. +
T Consensus 253 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~l~~~g~~~~~p~~~-~ 320 (400)
T PRK11646 253 ACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV-----------SNLQQLFTLICLFYIGSIIAEPARE-T 320 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHccHH-H
Confidence 4444444444455554 4565665666655555555444331 1122333333444444444333444 7
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHHHH
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG----SAATFWIFSVICFVGT 292 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~ 292 (318)
...|..|+++|+++.|+.+....+|..++|.+.|.+.|+.+ ....+......+++..
T Consensus 321 ~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 321 LSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 77899999999999999999999999999999999999853 2344444444444443
No 54
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.89 E-value=1.2e-22 Score=184.71 Aligned_cols=265 Identities=16% Similarity=0.214 Sum_probs=178.2
Q ss_pred cccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHH
Q psy16658 12 AWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL 91 (318)
Q Consensus 12 ~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~ 91 (318)
....|.+|.+.++ +|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++++++
T Consensus 53 ~~~~~~~~~l~~~-------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~ 125 (476)
T PLN00028 53 FAAAPLLPIIRDN-------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT 125 (476)
T ss_pred HHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3455777888887 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhh----------hHhHHhHH----------------------
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGG----------LSAIIPMF---------------------- 139 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~----------~~~~~p~~---------------------- 139 (318)
.+++.|+++|++.+... ....++.|++|+++|+++++.. ...+.|.+
T Consensus 126 ~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~ 204 (476)
T PLN00028 126 GFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVP 204 (476)
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHH
Confidence 99999999999987654 4567899999999999887710 00001110
Q ss_pred -------------H-HH--------Hhhc---c-------------cc--------------------------------
Q psy16658 140 -------------I-GE--------IAES---S-------------IR-------------------------------- 149 (318)
Q Consensus 140 -------------~-~~--------~~~~---~-------------~~-------------------------------- 149 (318)
+ ++ .+++ + ++
T Consensus 205 g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g 284 (476)
T PLN00028 205 GLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFG 284 (476)
T ss_pred HHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 0 00 0000 0 00
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh-----hh--hhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHH
Q psy16658 150 ------GISAIIVGIVQFIMTALSVVLVDKAGRRIL-----LL--LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLL 216 (318)
Q Consensus 150 ------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (318)
+....+..+++.+++++.|+++||++||+. .. ....+.++....+.. ....+....
T Consensus 285 ~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----------~~~~~~~~~ 353 (476)
T PLN00028 285 LSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR-----------ANSLGAAIV 353 (476)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHH
Confidence 356677778899999999999999986531 11 111111111111111 011222233
Q ss_pred HHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 217 SVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
.+.+++.+....... .+.+..+.. ++++++..|+.+..+++|+.++|.+.+ ..+..+|+..|.+.+++.+++.++.+
T Consensus 354 ~~~l~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~ 430 (476)
T PLN00028 354 VMILFSIFVQAACGA-TFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVA 430 (476)
T ss_pred HHHHHHHHHHHhhhh-hcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHH
Confidence 333444433332222 335555654 568999999998887777777776654 11233577888888777777666554
Q ss_pred ee
Q psy16658 297 VL 298 (318)
Q Consensus 297 ~~ 298 (318)
+.
T Consensus 431 ~~ 432 (476)
T PLN00028 431 FI 432 (476)
T ss_pred he
Confidence 43
No 55
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.89 E-value=3.7e-22 Score=176.48 Aligned_cols=245 Identities=21% Similarity=0.279 Sum_probs=173.5
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
-+..++..|.+|.+.++ +|.++++.+++.+.+.++..++.+++|+++||+|||+++..+..+.+++...+.++
T Consensus 4 ~~~~~~~~p~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~ 76 (377)
T PRK11102 4 PLAIDMYLPALPVIAAD-------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA 76 (377)
T ss_pred chHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 34566778999999988 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH----------------------
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF---------------------- 139 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~---------------------- 139 (318)
++++.+++.|+++|++.+...+...+++.|++|+|+|++.++ .+...+.|.+
T Consensus 77 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 156 (377)
T PRK11102 77 QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAI 156 (377)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887 0000000100
Q ss_pred ---------HHHHh---h--c--------------ccc--------------------------------------hHHH
Q psy16658 140 ---------IGEIA---E--S--------------SIR--------------------------------------GISA 153 (318)
Q Consensus 140 ---------~~~~~---~--~--------------~~~--------------------------------------g~~~ 153 (318)
.+|.. + + +++ |...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 236 (377)
T PRK11102 157 LAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYF 236 (377)
T ss_pred HHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHH
Confidence 01110 0 0 001 4666
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP 233 (318)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
....+..+++.++.+++.||+++|+.+..+.....+..+.+...... ....+.......+.............
T Consensus 237 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (377)
T PRK11102 237 ALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-------DLGFWALVVGVAAFVGCVSMISSNAM 309 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77788888999999999999999998887766544433322221110 01122222222233333322222222
Q ss_pred eeeeccccchhhhhhHHHHHHHHHH-HHHHHHHHHH
Q psy16658 234 WMMVGELFAPEVKGSATGIAVALNW-ISAFIVTLCF 268 (318)
Q Consensus 234 ~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~ 268 (318)
....|..| ++++++.++.+.... ++..+++.+.
T Consensus 310 -~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 310 -AVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred -HHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665 778999999877654 4455555543
No 56
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.89 E-value=1.5e-22 Score=182.50 Aligned_cols=265 Identities=15% Similarity=0.157 Sum_probs=182.1
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHhhcccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----KNVLMLFAARFIAGVATGGL 107 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~~~g~~ 107 (318)
+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+...+. ++++.+.+.|++.|++.+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~ 135 (438)
T TIGR00712 56 QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMG 135 (438)
T ss_pred cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcc
Confidence 68999999999999999999999999999999999999999999999988887764 46788889999999999999
Q ss_pred ccccchhhhhccCchhhhHHHH------hhhHhHHhH--------------------------------HHHHHh-----
Q psy16658 108 SAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM--------------------------------FIGEIA----- 144 (318)
Q Consensus 108 ~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~--------------------------------~~~~~~----- 144 (318)
.+.....+.|++|+|+|+++++ .+...+.|. ..+|..
T Consensus 136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~ 215 (438)
T TIGR00712 136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL 215 (438)
T ss_pred hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence 9989999999999999999888 000000000 001100
Q ss_pred ---------------h--c--------------ccc--------------------------------------hHHHHH
Q psy16658 145 ---------------E--S--------------SIR--------------------------------------GISAII 155 (318)
Q Consensus 145 ---------------~--~--------------~~~--------------------------------------g~~~~~ 155 (318)
+ + +++ +....+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 295 (438)
T TIGR00712 216 PPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFL 295 (438)
T ss_pred CCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHH
Confidence 0 0 000 356667
Q ss_pred HHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 156 VGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
..+.+++++++.|++.||+++++....+................ .. ..+.+.........+... .+.......
T Consensus 296 ~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 368 (438)
T TIGR00712 296 YEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM--NP----AGNPLVDMICMIVIGFLI-YGPVMLIGL 368 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh--cC----CCchHHHHHHHHHHHHHH-ccHHHHHHH
Confidence 77888999999999999996543322232222221111111100 00 011122222222222211 111111113
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISA-FIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
...|.+|++.|+++.|+.+...+.++ .++|.+.|.+.|+.|+...+.+..+...++.+..+...+|+|
T Consensus 369 ~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 369 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45688999999999999999988874 689999999999999999988888877777777766666654
No 57
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.89 E-value=3e-22 Score=177.61 Aligned_cols=265 Identities=21% Similarity=0.209 Sum_probs=177.8
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHH-----HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSL-----IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
.++.....+..+.+.+++. .+.++++.+.+.+. ..++..+++++.|+++||+||||++..+.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 80 (394)
T TIGR00883 6 WFDFYLYGFAAVLVFHTFF-----PPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTL 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHhc-----CCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444445555566655531 23556667665543 3334457899999999999999999999999999999
Q ss_pred HHHHHhhHH--------HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHh-----------
Q psy16658 83 LILFAKNVL--------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIP----------- 137 (318)
Q Consensus 83 ~~~~~~s~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p----------- 137 (318)
+++++++++ .+++.|+++|++.+...+...+++.|++|+|+|++..+ .++..+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 81 LIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred HHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998875 47889999999999999999999999999999988776 00000000
Q ss_pred ------------HHH---------------HH----Hh---h-cc------------cc---------------------
Q psy16658 138 ------------MFI---------------GE----IA---E-SS------------IR--------------------- 149 (318)
Q Consensus 138 ------------~~~---------------~~----~~---~-~~------------~~--------------------- 149 (318)
... +| .+ + ++ ++
T Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T TIGR00883 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITT 240 (394)
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 10 00 0 00 00
Q ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658 150 -----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF 212 (318)
Q Consensus 150 -----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (318)
+.......+...++.++.+++.||++||+.+.....+..+.......... . ....+
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~ 313 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL--D-----SGSFT 313 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh--c-----CCchH
Confidence 35566677888899999999999999999776554433332211111110 0 11223
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhc-hhhHHHHHH
Q psy16658 213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVAL-NWISAFIVTLCFVFLVKNLG-SAATFWIFS 285 (318)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 285 (318)
.......+.+...+....+.. ....|.+|+++|+++.++.+.. ..++..++|.+.|.+.|+.| ++..++...
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 314 LFFFLVLGLALIGGMYTGPMG-SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 333444444554544444444 7888999999999999985444 56788899999999999988 655444433
No 58
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.89 E-value=1.5e-22 Score=176.92 Aligned_cols=247 Identities=25% Similarity=0.337 Sum_probs=186.8
Q ss_pred ccccccccccccccccc-cccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLP-ILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW 81 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~ 81 (318)
+.+...++.+...+.+| .+.++ +|.++.+.+++.+.+.++..++.++.|+++||+||||++..+..+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 76 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEE-------LGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGS 76 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCC-------STTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHH
Confidence 44566677777888888 67777 89999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------
Q psy16658 82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI--------------- 140 (318)
Q Consensus 82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~--------------- 140 (318)
+...++++++.+++.|++.|++.+...+...+++.|++|+|+|++.++ .+...+.|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 77 LLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred HHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 777777888899999999999999999999999999999999999998 11111111111
Q ss_pred ----------------H--------HHhhcc---------c--c------------------------------------
Q psy16658 141 ----------------G--------EIAESS---------I--R------------------------------------ 149 (318)
Q Consensus 141 ----------------~--------~~~~~~---------~--~------------------------------------ 149 (318)
. +.++++ + +
T Consensus 157 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV 236 (352)
T ss_dssp HHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred ccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc
Confidence 0 000000 0 0
Q ss_pred ---------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658 150 ---------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF 220 (318)
Q Consensus 150 ---------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (318)
+....+..+.+.++.++.+++.||+++|+..........+....+...... .+..+......+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~ 308 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS--------SSPVWLIIALFL 308 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH--------CHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHH
Confidence 244566677777789999999999999888777766666655555443221 122344445555
Q ss_pred HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy16658 221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT 265 (318)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~ 265 (318)
.+.+.+....... .+..|..|+++|+++.|+.+...+++..++|
T Consensus 309 ~g~~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 309 IGFGFGIVFPILF-SLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHCHHHH-HHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 6665555444444 8889999999999999999999999999987
No 59
>PRK11043 putative transporter; Provisional
Probab=99.89 E-value=7.1e-22 Score=176.16 Aligned_cols=254 Identities=17% Similarity=0.164 Sum_probs=178.9
Q ss_pred ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh
Q psy16658 9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK 88 (318)
Q Consensus 9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~ 88 (318)
+..+...|.+|.+.++ ++.++++.++..+++.++..++++++|+++||+|||+++..+..+..++.+.+.+++
T Consensus 20 ~~~~~~~p~~~~i~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 20 LATDMYLPAFKAIQAD-------LQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHhhHHHHHHH-------HCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 4455667777888777 899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH----------------------
Q psy16658 89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI---------------------- 140 (318)
Q Consensus 89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~---------------------- 140 (318)
+++.+++.|+++|++.+...+...+++.|++|++++++..+ .+...+.|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 99999999999999988888888899999999998876655 00001111110
Q ss_pred ---------HHH---hhcc----------cc-------------------------------------hHHHHHHHHHHH
Q psy16658 141 ---------GEI---AESS----------IR-------------------------------------GISAIIVGIVQF 161 (318)
Q Consensus 141 ---------~~~---~~~~----------~~-------------------------------------g~~~~~~~~~~~ 161 (318)
++. ++++ ++ |.......++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~ 252 (401)
T PRK11043 173 LILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFL 252 (401)
T ss_pred HHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 000 0000 00 344445556777
Q ss_pred HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658 162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF 241 (318)
Q Consensus 162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (318)
++.+..+++.||+++|+..........++...+....... ....+.......+.+.+.+..++... ....|..
T Consensus 253 ~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (401)
T PRK11043 253 VGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS------HPSLVPLLIPFCVMAAANGAIYPIVV-AQALRPF 325 (401)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cCcHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhC
Confidence 7888889999999988876655554444443332221110 11122223333444444444333333 4444555
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
| ++|+++.|+.+.....+...++.+.+.+.|....
T Consensus 326 ~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 326 P-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred c-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 5 5699999999999999999999999998875443
No 60
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.89 E-value=9.4e-22 Score=178.71 Aligned_cols=262 Identities=17% Similarity=0.103 Sum_probs=176.8
Q ss_pred CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHhhccccc
Q psy16658 31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA--KNVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~l~G~~~g~~~ 108 (318)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 689999999999999999999999999999999999999999999999998887654 568889999999999999999
Q ss_pred cccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------------------------H------
Q psy16658 109 AIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI-----------------------------------G------ 141 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~-----------------------------------~------ 141 (318)
+....++.||+|+++|+++++ .+...+.|.+. +
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~ 229 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI 229 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence 999999999999999999988 00000011000 0
Q ss_pred ---HHh-------hc--c--c---c---------------------------------------------hHHHHHHHHH
Q psy16658 142 ---EIA-------ES--S--I---R---------------------------------------------GISAIIVGIV 159 (318)
Q Consensus 142 ---~~~-------~~--~--~---~---------------------------------------------g~~~~~~~~~ 159 (318)
|.+ ++ + + . |....+..++
T Consensus 230 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~ 309 (465)
T TIGR00894 230 SKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLF 309 (465)
T ss_pred CHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHH
Confidence 000 00 0 0 0 4666777888
Q ss_pred HHHHHHHHHHHhhccCCeehhhh---hhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658 160 QFIMTALSVVLVDKAGRRILLLL---SDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM 236 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (318)
..++.++.|+++||.++|+.... ......++.............. ....+..+....+.+...... .+..+..
T Consensus 310 ~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ 385 (465)
T TIGR00894 310 AWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL---SAAFYLTIIILTLANAVSSGP-LAGVLIN 385 (465)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHhhhh-hhhhhhc
Confidence 99999999999999765432210 1111111111111100000000 011222222333333322222 2223244
Q ss_pred eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHhhe
Q psy16658 237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL---GSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
..|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.++..+++.++...
T Consensus 386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 4565654 7999999999999999999999999988753 3777888887777776655544
No 61
>TIGR00895 2A0115 benzoate transport.
Probab=99.88 E-value=9.8e-22 Score=174.62 Aligned_cols=246 Identities=23% Similarity=0.279 Sum_probs=183.6
Q ss_pred ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658 7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
.+++.....+..|.+.++ +|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+..+..++.++..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 101 (398)
T TIGR00895 29 DGYDLAAMGFAAPAISAE-------WGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCAL 101 (398)
T ss_pred HHHHHHHHHhhHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778888887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhH-----------------------Hh
Q psy16658 87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAI-----------------------IP 137 (318)
Q Consensus 87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~-----------------------~p 137 (318)
+++++.+++.|++.|++.+...+...+++.|++|+++|+++++ .+...+ .+
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~ 181 (398)
T TIGR00895 102 ATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAP 181 (398)
T ss_pred ccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHH
Confidence 9999999999999999999999999999999999999998887 000000 00
Q ss_pred H-----HH---H-------HH------------------------h---hcc------------c---c-----------
Q psy16658 138 M-----FI---G-------EI------------------------A---ESS------------I---R----------- 149 (318)
Q Consensus 138 ~-----~~---~-------~~------------------------~---~~~------------~---~----------- 149 (318)
. .. + +. . +++ + +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (398)
T TIGR00895 182 LLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFM 261 (398)
T ss_pred HHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHH
Confidence 0 00 0 00 0 000 0 0
Q ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccC
Q psy16658 150 --------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED 203 (318)
Q Consensus 150 --------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (318)
+.......++.+++.++.+++.||+++|+... ......+...++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~------ 334 (398)
T TIGR00895 262 LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGST------ 334 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH------
Confidence 35666777888899999999999999984433 333333332222221
Q ss_pred CCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 204 GKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL 271 (318)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l 271 (318)
....+......++.+.+.+...... .++..|.+|+++|+++.|+.+....++..++|.+.|.+
T Consensus 335 ----~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 335 ----LFSPTLLLLLGAIAGFFVNGGQSGL-YALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ----hhCHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 0112333444555555555444444 47889999999999999999999999999999998875
No 62
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.88 E-value=3.6e-22 Score=180.55 Aligned_cols=259 Identities=17% Similarity=0.178 Sum_probs=183.3
Q ss_pred ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16658 15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF 94 (318)
Q Consensus 15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~ 94 (318)
...+|.+.++ +|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++.++++++++.++
T Consensus 39 ~~~~~~i~~~-------~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~ 111 (455)
T TIGR00892 39 TVFFKELQQI-------FQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELY 111 (455)
T ss_pred hhhHHHHHHH-------hCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence 3445666666 999999999999999999999999999999999999999999999999999999999999886
Q ss_pred H-HHHHHHhhccccccccchhhhhccCchhhhHHHH---------------------------------hhh---HhHHh
Q psy16658 95 A-ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT---------------------------------GGL---SAIIP 137 (318)
Q Consensus 95 ~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~---------------------------------~~~---~~~~p 137 (318)
+ .|+++|++.+...+...+++.|+++ ++|+++.+ ... ..+..
T Consensus 112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~ 190 (455)
T TIGR00892 112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG 190 (455)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5 5799999998877777888899996 78988887 000 00000
Q ss_pred HHH----HH-----Hh--h---------c-------------------ccc-----------------------------
Q psy16658 138 MFI----GE-----IA--E---------S-------------------SIR----------------------------- 149 (318)
Q Consensus 138 ~~~----~~-----~~--~---------~-------------------~~~----------------------------- 149 (318)
... ++ .+ + + +++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 270 (455)
T TIGR00892 191 ALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD 270 (455)
T ss_pred HHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 000 00 00 0 0 000
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhh--HHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658 150 --------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSD--FVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS 217 (318)
Q Consensus 150 --------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (318)
|....+.+++.++++++.+++.||. ++|+...... +..+++.+.... ..+.+.....
T Consensus 271 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~~~~~~~i~ 339 (455)
T TIGR00892 271 KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL-----------AGDYTGLVIY 339 (455)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH-----------hchHHHHHHH
Confidence 3666677788888899999999974 3333333222 222222222211 1123334444
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHH
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTL 293 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 293 (318)
..+.+.+.+..... ..+.+.|.+|+++++++.|+.+...++|..++|.+.|.+.|..+ |+..|++.+++.+++.+
T Consensus 340 ~~~~G~~~g~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 340 CIFFGLSFGSVGAL-LFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHhchHHHH-HHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 55555554443333 33777789999999999999999999999999999999999874 87888777666555444
No 63
>KOG1330|consensus
Probab=99.88 E-value=3.6e-22 Score=171.38 Aligned_cols=256 Identities=15% Similarity=0.119 Sum_probs=176.2
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKN 89 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s 89 (318)
+......+.+..+.. +|++++..|++.+.+.+.+.+.+|+.|+++||++||+++.+|..++.++.++++++..
T Consensus 48 Dr~~iagv~~~v~~~-------fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~ 120 (493)
T KOG1330|consen 48 DRYTIAGVLKEVQTY-------FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH 120 (493)
T ss_pred hhhhhhhhhHHHHHh-------cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH
Confidence 334444455555555 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-------------------------------------hhh
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-------------------------------------GGL 132 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-------------------------------------~~~ 132 (318)
||+++++|.+.|+|.+...|+.+++++|.+|+.+|+++++ +++
T Consensus 121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi 200 (493)
T KOG1330|consen 121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVI 200 (493)
T ss_pred HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHH
Confidence 9999999999999999999999999999999999999999 122
Q ss_pred HhHHhHHH-HHHhh--------ccc----c--------------------------------------------------
Q psy16658 133 SAIIPMFI-GEIAE--------SSI----R-------------------------------------------------- 149 (318)
Q Consensus 133 ~~~~p~~~-~~~~~--------~~~----~-------------------------------------------------- 149 (318)
..++-.++ .|.++ +.+ .
T Consensus 201 ~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~ 280 (493)
T KOG1330|consen 201 VGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGF 280 (493)
T ss_pred HHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCC
Confidence 22222222 22211 000 0
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHhhccCCe----ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658 150 -----GISAIIVGIVQFIMTALSVVLVDKAGRR----ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF 220 (318)
Q Consensus 150 -----g~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (318)
-++..+...++.+|...+|.++||+.|+ .......+.++.+.............. ..........+++
T Consensus 281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~---~~~s~~~~~il~~ 357 (493)
T KOG1330|consen 281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAF---TSSSMIFGLILFL 357 (493)
T ss_pred ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhh---hhHHHHHHHHHHH
Confidence 1556677788889999999999994321 222222222222222111111111100 1112223333344
Q ss_pred HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q psy16658 221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNL 275 (318)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~ 275 (318)
++............-...|..||+.|.++.++-..+..+ |.+-+|++.|.+.|+.
T Consensus 358 ~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 358 VGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred HHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 443333333333335556889999999999999877654 5666777999999874
No 64
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.88 E-value=3.7e-21 Score=168.76 Aligned_cols=245 Identities=16% Similarity=0.139 Sum_probs=178.2
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhh
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKN 89 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s 89 (318)
......|.+|.+.++ +|.+.++.+++.+.+.++..++.++.|++.||+||||++.++.++..++.+.+ .+++
T Consensus 15 ~~~~~~~~lp~l~~~-------~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~ 86 (355)
T TIGR00896 15 ALTSVGPLLPQIRSA-------LGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG 86 (355)
T ss_pred ccccCcccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence 345667899999988 99999999999999999999999999999999999999999998888888777 7889
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHH---------------------------
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAII--------------------------- 136 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~--------------------------- 136 (318)
++.+++.|++.|++.+...+....++.|++| ++|+++++ .+...+.
T Consensus 87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999888888889999986 57887777 0000000
Q ss_pred -h--HHHHHHhhc-------c---------cc-------------------------------------hHHHHHHHHHH
Q psy16658 137 -P--MFIGEIAES-------S---------IR-------------------------------------GISAIIVGIVQ 160 (318)
Q Consensus 137 -p--~~~~~~~~~-------~---------~~-------------------------------------g~~~~~~~~~~ 160 (318)
. ...++.+++ + ++ |.......++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~ 245 (355)
T TIGR00896 166 LALLAWIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQ 245 (355)
T ss_pred HHHHHHhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 000111100 0 00 46777788899
Q ss_pred HHHHHHHHHHhhccC-CeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec-
Q psy16658 161 FIMTALSVVLVDKAG-RRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG- 238 (318)
Q Consensus 161 ~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (318)
++++++.|++.||++ ||+.+..+.....++...+.+.. . ... .....+.+.+.+...+... ....
T Consensus 246 i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~-~~~~~l~g~~~g~~~~~~~-~~~~~ 312 (355)
T TIGR00896 246 AASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP----------M-HGL-WAWALVLGLGQGGAFPLAL-TLIGL 312 (355)
T ss_pred HHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh----------h-hHH-HHHHHHHHHhhhhHhHHHH-HHHHH
Confidence 999999999999995 55566666666666555444321 0 111 1123344444433333222 3333
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG 276 (318)
Q Consensus 239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 276 (318)
+..+++++++..++.+...+++..++|.+.|.+.|+.|
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 313 RSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456777999999999999999999999999999887
No 65
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.88 E-value=3.2e-21 Score=172.34 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=107.6
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+...+......|.+|.+.++ ++.+.++.++..+.+.+++.++++++|+++||+||||++..+..+..++++++
T Consensus 26 ~~~~~~~~~~~p~l~~i~~~-------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~ 98 (413)
T PRK15403 26 FAAYLTTDLIQPGIINVVRD-------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT 98 (413)
T ss_pred HHHHHHHHhhccCHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 33445667788999998888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
.++++++.+++.|+++|++.+...+....++.|++|+++|++.++
T Consensus 99 ~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (413)
T PRK15403 99 LFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMA 143 (413)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999988767777888999999999988766
No 66
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.88 E-value=2.8e-21 Score=175.33 Aligned_cols=268 Identities=16% Similarity=0.207 Sum_probs=202.8
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH--
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-- 87 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-- 87 (318)
+..+....++-+..+ ..-|+..++++.++..+...+.++++|.++||++|||+++.+..+..+..+..++.
T Consensus 25 G~~~~~va~~wlv~~-------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~ 97 (524)
T PF05977_consen 25 GDWMQTVALAWLVTQ-------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAF 97 (524)
T ss_pred HHHHHHHHHHHHHHH-------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555 66788899999999999999999999999999999999999988877665555442
Q ss_pred ---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhHhHH-------hHHH---
Q psy16658 88 ---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLSAII-------PMFI--- 140 (318)
Q Consensus 88 ---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~~~~-------p~~~--- 140 (318)
.+.+.+++.-++.|++.+...|+.++++.|.+|+++...+.+ .++..++ .+.+
T Consensus 98 ~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inal 177 (524)
T PF05977_consen 98 FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINAL 177 (524)
T ss_pred hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999887777 0000000 0000
Q ss_pred -------------HHHhhc---c----------------cc--------------------------------------h
Q psy16658 141 -------------GEIAES---S----------------IR--------------------------------------G 150 (318)
Q Consensus 141 -------------~~~~~~---~----------------~~--------------------------------------g 150 (318)
.+.+++ + ++ |
T Consensus 178 sfl~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yG 257 (524)
T PF05977_consen 178 SFLISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYG 257 (524)
T ss_pred HHHHHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHH
Confidence 000000 0 00 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
++....+++.+++.++.+++.+|.++++.+..+.+..+++.+.+.+. .+.+......++.+.+......
T Consensus 258 ll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~-----------~~~~~~~~~l~l~G~~~~~~~~ 326 (524)
T PF05977_consen 258 LLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS-----------PSFWLALIALFLAGAAWIIANS 326 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998888887777777766652 3345555556666666555444
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
... +..++..|++.||++++++.+....+..+|..+.|.+.|+.|.+..+.+.++..++..++..
T Consensus 327 ~~~-t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 327 SLN-TLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHH-HHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 444 77789999999999999999999999999999999999999988888766665555544443
No 67
>PRK10133 L-fucose transporter; Provisional
Probab=99.88 E-value=1.5e-21 Score=175.51 Aligned_cols=264 Identities=17% Similarity=0.147 Sum_probs=193.9
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
++.++......+.+|.++++ ++.++.+.|++.+.+.+++.+++++.|++.||+||||++..+..+++++++++
T Consensus 36 ~~~~~~~~~~~~~~p~i~~~-------~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 36 FLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 44566666777888998777 99999999999999999999999999999999999999999999999999875
Q ss_pred ---HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhHhHH-----------
Q psy16658 85 ---LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLSAII----------- 136 (318)
Q Consensus 85 ---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~~~~----------- 136 (318)
.++++++.++++|+++|++.+...+..++++.|+.|+++|.+.++ .+...+.
T Consensus 109 ~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~ 188 (438)
T PRK10133 109 WPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhh
Confidence 468899999999999999999999999999999887777765444 0100000
Q ss_pred ----------------------hHH--H---------------HHHh--h-c---------------ccc----------
Q psy16658 137 ----------------------PMF--I---------------GEIA--E-S---------------SIR---------- 149 (318)
Q Consensus 137 ----------------------p~~--~---------------~~~~--~-~---------------~~~---------- 149 (318)
|.. . +|.+ + + +++
T Consensus 189 ~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~ 268 (438)
T PRK10133 189 LDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQF 268 (438)
T ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCchHHHHHHHHH
Confidence 000 0 1100 0 0 001
Q ss_pred -----------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhh
Q psy16658 150 -----------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYM 200 (318)
Q Consensus 150 -----------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (318)
|.......++.++++++.+++.||+++|+.+..+..+..+.+.+....
T Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--- 345 (438)
T PRK10133 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--- 345 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc---
Confidence 466677888899999999999999999998887766655544433321
Q ss_pred ccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhh
Q psy16658 201 MEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAA 279 (318)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~ 279 (318)
... .......+.+.+.+..++... +...|..|++ .+++.++.. ....++.++|.+.|.+.|..| .+.
T Consensus 346 --------~~~-~~~~~~~l~glg~~~i~P~~~-s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~ 413 (438)
T PRK10133 346 --------GGH-VGLIALTLCSAFMSIQYPTIF-SLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_pred --------CCh-HHHHHHHHHHHHHHHHHHHHH-HHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHH
Confidence 011 223445556666666666555 6666766654 577888776 455788999999999999887 667
Q ss_pred HHHHHHHHHHH
Q psy16658 280 TFWIFSVICFV 290 (318)
Q Consensus 280 ~~~~~~~~~~~ 290 (318)
.|++.......
T Consensus 414 ~~~v~~~~~~~ 424 (438)
T PRK10133 414 AELIPALCFAV 424 (438)
T ss_pred HHHHHHHHHHH
Confidence 77654444333
No 68
>KOG2532|consensus
Probab=99.87 E-value=2.9e-21 Score=172.45 Aligned_cols=259 Identities=21% Similarity=0.223 Sum_probs=186.4
Q ss_pred cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhhcccc
Q psy16658 30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVLMLFAARFIAGVATGGL 107 (318)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~ 107 (318)
.+++++.+|.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|++||++.|..
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 46999999999999999999999999999999999999999999999999999999985 4467899999999999999
Q ss_pred ccccchhhhhccCchhhhHHHH-------------------------------------hhhHhHHhHHH----------
Q psy16658 108 SAIIPMFIGEIAESSIRAGVAT-------------------------------------GGLSAIIPMFI---------- 140 (318)
Q Consensus 108 ~~~~~~~i~~~~~~~~r~~~~~-------------------------------------~~~~~~~p~~~---------- 140 (318)
+|+...+..+|.|++||++..+ +++..++...+
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~ 225 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPN 225 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCC
Confidence 9999999999999999998888 11111111111
Q ss_pred ---HHHhh---------ccc--c------------------------------------------------hHHHHHHHH
Q psy16658 141 ---GEIAE---------SSI--R------------------------------------------------GISAIIVGI 158 (318)
Q Consensus 141 ---~~~~~---------~~~--~------------------------------------------------g~~~~~~~~ 158 (318)
+|.+. .++ + |+...+..+
T Consensus 226 is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l 305 (466)
T KOG2532|consen 226 ISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFL 305 (466)
T ss_pred CCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHH
Confidence 22211 000 0 789999999
Q ss_pred HHHHHHHHHHHHhhccCCe--------e-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 159 VQFIMTALSVVLVDKAGRR--------I-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 159 ~~~~~~~~~g~l~d~~g~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
...+..+++|.++||..+| | ...++....+++++.+.+. . ....+..+.++.+.....+...
T Consensus 306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~---~------~~~~~~a~~~l~~~~~~~g~~~ 376 (466)
T KOG2532|consen 306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT---S------DEHRLLAVILLTIAIGLSGFNI 376 (466)
T ss_pred HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec---C------CCcchHHHHHHHHHHHHcccch
Confidence 9999999999999998663 1 1123333333333333332 0 1112222322222222222211
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK---NLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.... .-..+. -|++.+..+|+.+....+.++++|.+.+.+.. ...|+..|.+.+++.+++.++..++-
T Consensus 377 ~Gf~-~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 377 SGFY-KNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred hhhH-hhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 1111 222222 56778999999999999999999999999983 34699999999999888876655553
No 69
>KOG0253|consensus
Probab=99.87 E-value=3.8e-21 Score=160.14 Aligned_cols=260 Identities=17% Similarity=0.210 Sum_probs=201.6
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
++.+..|..++....+.+..+++-.||..+|++||||.+....+...+...+.+.++++..+++.|.+.|+|.|+ .|..
T Consensus 108 w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~ 186 (528)
T KOG0253|consen 108 WGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVD 186 (528)
T ss_pred hchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred chhhhhccCchhhhHHHH---------------------------hhhHhHHhHHH------------------------
Q psy16658 112 PMFIGEIAESSIRAGVAT---------------------------GGLSAIIPMFI------------------------ 140 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~---------------------------~~~~~~~p~~~------------------------ 140 (318)
.++-.|..|..+|..-+- .+.....|..+
T Consensus 187 ~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kA 266 (528)
T KOG0253|consen 187 SAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKA 266 (528)
T ss_pred HHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHH
Confidence 999999999888864332 12222234433
Q ss_pred -------------------------HHHhhc-------------ccc---------------------------------
Q psy16658 141 -------------------------GEIAES-------------SIR--------------------------------- 149 (318)
Q Consensus 141 -------------------------~~~~~~-------------~~~--------------------------------- 149 (318)
++.+++ +.+
T Consensus 267 letL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~V 346 (528)
T KOG0253|consen 267 LETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSV 346 (528)
T ss_pred HHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 000000 000
Q ss_pred -------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658 150 -------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG 192 (318)
Q Consensus 150 -------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 192 (318)
=.-..+..+...+|.++.+++.||+|||+++..+.++++++.+
T Consensus 347 Llttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflf 426 (528)
T KOG0253|consen 347 LLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLF 426 (528)
T ss_pred HHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 0445677889999999999999999999999999998888887
Q ss_pred HHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 193 VLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV 272 (318)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~ 272 (318)
.+.... ......+..+..-.+... .....+.|..|.+|+..|+++.|..+.+..+|+++.|.+. +.
T Consensus 427 ll~~c~-----------~rn~~tvllf~arafisg-~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~ 492 (528)
T KOG0253|consen 427 LLTTCK-----------TRNAYTVLLFTARAFISG-AFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MR 492 (528)
T ss_pred HHHHhc-----------CcchhHHHHHHHHHHHhc-hheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HH
Confidence 776631 122223333333333333 3445569999999999999999999999999999999998 33
Q ss_pred HHhchhhHHHHHHHHHHHHHHHhheeccCCCCCC
Q psy16658 273 KNLGSAATFWIFSVICFVGTLFTFVLVPETKGKT 306 (318)
Q Consensus 273 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
..........+++++++++.+...++-.|+|+|+
T Consensus 493 ~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 493 AELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred hccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 3333345666778888888887777667888775
No 70
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.87 E-value=9.4e-21 Score=168.45 Aligned_cols=273 Identities=14% Similarity=0.165 Sum_probs=174.0
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHH-HHhhhhhhhhhhhhhhcchhHH-HHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAI-GAIFGALPAGSIADKFGRKPVI-LAFCIPFIISW 81 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~ 81 (318)
.++.+.......|.+|.+..+. +|.++++.|++.+...+ +..++.++.++ .||+||||.+ ..+.++.+++.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~------~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~ 96 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDE------VHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC 96 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence 3455666677788888865442 89999999999876655 55555555555 9999999874 56667777888
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhH--HHH------hhhHhHHhH---------------
Q psy16658 82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAG--VAT------GGLSAIIPM--------------- 138 (318)
Q Consensus 82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~--~~~------~~~~~~~p~--------------- 138 (318)
.+.+++++++.+++.+.+.+...+...|...++..|+.++++|.. ..+ .+...+.|.
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f 176 (393)
T PRK15011 97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMY 176 (393)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHH
Confidence 888899999988766555554446677888888899887766532 111 000001111
Q ss_pred --------------H--HHHHhhc------------cc-c--------------------------------------hH
Q psy16658 139 --------------F--IGEIAES------------SI-R--------------------------------------GI 151 (318)
Q Consensus 139 --------------~--~~~~~~~------------~~-~--------------------------------------g~ 151 (318)
. .+|.+++ ++ + |.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~ 256 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGV 256 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 0 1211100 01 1 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP 231 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
......+..+++.++.|+++||++||+.+..+.....+........ ...+..+....+.....+.....
T Consensus 257 ~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~l~~~~~g~~~~~ 325 (393)
T PRK15011 257 MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-----------HSPAILLGLQLLNAIYIGILGGI 325 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556677788999999999999987766544443332222110 11222222222222222222222
Q ss_pred cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
.. .+..|..|++ |+++.++++...++|..++|.+.|.+.|+.||+..+.+.....++..+..+
T Consensus 326 ~~-~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK15011 326 GM-LYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL 388 (393)
T ss_pred HH-HHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 22 4557888754 899999999999999999999999999999998888776666666544443
No 71
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.87 E-value=4.8e-21 Score=170.76 Aligned_cols=258 Identities=19% Similarity=0.162 Sum_probs=190.1
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..|+..+...|.+|.++++ +|.++.+.|++.+.+.+++.+++++.|++.||+||||++..+..+.+++.++
T Consensus 12 f~~~G~~~~~~~~l~~~~~~~-------~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l 84 (410)
T TIGR00885 12 FALWGFANDITNPMVPQFQQA-------FTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL 84 (410)
T ss_pred HHHHHHHHHhHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 345677788888999999888 8999999999999999999999999999999999999999999999999988
Q ss_pred HHH---HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH---------------------
Q psy16658 84 ILF---AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS--------------------- 133 (318)
Q Consensus 84 ~~~---~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~--------------------- 133 (318)
... .++++.+++.|++.|++.|...+...+++.+..|+++|++.++ .++.
T Consensus 85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~ 164 (410)
T TIGR00885 85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQD 164 (410)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh
Confidence 654 3689999999999999999999999999999999999987776 0000
Q ss_pred --------------------hHHhHHH-----------------HHHh---hc------------ccc------------
Q psy16658 134 --------------------AIIPMFI-----------------GEIA---ES------------SIR------------ 149 (318)
Q Consensus 134 --------------------~~~p~~~-----------------~~~~---~~------------~~~------------ 149 (318)
.-.|... +|.+ ++ +++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~y 244 (410)
T TIGR00885 165 VLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFY 244 (410)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHHH
Confidence 0011110 1100 00 001
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhcc
Q psy16658 150 ---------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMME 202 (318)
Q Consensus 150 ---------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (318)
+...........+++++++++.||+++|+.+..+.....+++++....
T Consensus 245 vg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~----- 319 (410)
T TIGR00885 245 VGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA----- 319 (410)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 012333445567899999999999999998888777777666655542
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------c
Q psy16658 203 DGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL------G 276 (318)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g 276 (318)
. .........+.+.+.+..+ |..+....+..+++.+....++.... +|+.+.|++.|.+.|+. +
T Consensus 320 ------~-~~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~ 389 (410)
T TIGR00885 320 ------G-GHVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPA 389 (410)
T ss_pred ------C-ChHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCc
Confidence 1 1122455555566665556 44447777888877654455544443 99999999999999964 3
Q ss_pred hhhHHHH
Q psy16658 277 SAATFWI 283 (318)
Q Consensus 277 ~~~~~~~ 283 (318)
.+..|.+
T Consensus 390 ~~~~~~~ 396 (410)
T TIGR00885 390 VNTSFIL 396 (410)
T ss_pred cchHHHH
Confidence 5555654
No 72
>KOG0255|consensus
Probab=99.87 E-value=6.5e-20 Score=168.95 Aligned_cols=272 Identities=25% Similarity=0.329 Sum_probs=204.0
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
++.+.....+..+++.+|..++++++|.++||+|||++++++.++..++.+..++++|++.+++.|+++|++.+......
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~ 192 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVG 192 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHh
Confidence 66788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCchhhhHHHHh-----hhHh--------------------HHhH--------HH------------------
Q psy16658 112 PMFIGEIAESSIRAGVATG-----GLSA--------------------IIPM--------FI------------------ 140 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~~-----~~~~--------------------~~p~--------~~------------------ 140 (318)
..++.|++++|+|+.+... .+.. ..|. +.
T Consensus 193 ~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~ 272 (521)
T KOG0255|consen 193 FGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK 272 (521)
T ss_pred HhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence 9999999999999988771 0000 0000 00
Q ss_pred --HHHhh--------------c------c-----c-c-------------------------------------------
Q psy16658 141 --GEIAE--------------S------S-----I-R------------------------------------------- 149 (318)
Q Consensus 141 --~~~~~--------------~------~-----~-~------------------------------------------- 149 (318)
++..+ . . + .
T Consensus 273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~ 352 (521)
T KOG0255|consen 273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNI 352 (521)
T ss_pred HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchH
Confidence 00000 0 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
.......+....+.....+...|+.|||.....+.....++++...+...... .+.......+...+...++
T Consensus 353 ~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 424 (521)
T KOG0255|consen 353 YLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG--------GWLHWILPLLGKFFIGSAF 424 (521)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch--------hHHHHHHHHHHHHHHHHHH
Confidence 14555555677777888889999999999999999998888888877532211 0223444444444455555
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQ 309 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
... +.+..|++|+..|+.+.+..+....++.+++|.+.-.... ......+.+++....+..++...++||++++...+
T Consensus 425 ~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 425 NLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred HHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 555 4888999999999999999999999999999988754444 22222333346666666677767899998877654
Q ss_pred HHHH
Q psy16658 310 IQRE 313 (318)
Q Consensus 310 ~~~~ 313 (318)
..++
T Consensus 503 t~~~ 506 (521)
T KOG0255|consen 503 TLLD 506 (521)
T ss_pred hHHH
Confidence 4333
No 73
>KOG3764|consensus
Probab=99.86 E-value=1.9e-21 Score=163.64 Aligned_cols=262 Identities=19% Similarity=0.112 Sum_probs=188.4
Q ss_pred cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccc
Q psy16658 30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSA 109 (318)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~ 109 (318)
++.+.+++++|++.+...+...+.+++.|.+.||+|+|-.++++...+..++++.++.++|+.+++.|.+||+|.+...+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~t 178 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADT 178 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccCchh-hhHHHH------hhhHhHHhHHH-------------------------------H--HHhh----
Q psy16658 110 IIPMFIGEIAESSI-RAGVAT------GGLSAIIPMFI-------------------------------G--EIAE---- 145 (318)
Q Consensus 110 ~~~~~i~~~~~~~~-r~~~~~------~~~~~~~p~~~-------------------------------~--~~~~---- 145 (318)
+..++++|.+|+++ |++++| +++..+.|.+. + |.++
T Consensus 179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~ 258 (464)
T KOG3764|consen 179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE 258 (464)
T ss_pred hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCccccc
Confidence 99999999999776 699999 11111111110 0 1111
Q ss_pred -cccc---------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658 146 -SSIR---------------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL 179 (318)
Q Consensus 146 -~~~~---------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 179 (318)
.+++ |..+....+...++..+.|.++||++..+.
T Consensus 259 ~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w 338 (464)
T KOG3764|consen 259 QGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW 338 (464)
T ss_pred cCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH
Confidence 0000 566777888899999999999999995444
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchh---hhhhHHHHHHHH
Q psy16658 180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPE---VKGSATGIAVAL 256 (318)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~ 256 (318)
+.....+...+......+.. +. -...|.......+.+........|.. .++.|....+ ..|.+.++....
T Consensus 339 l~~~~gl~~~G~~~~~iP~~---~~---~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a 411 (464)
T KOG3764|consen 339 LLSLGGLATVGVSSGPIPFA---TS---IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAA 411 (464)
T ss_pred HHHHHHHHHHHHHhchhHhh---hh---HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHH
Confidence 43322222222222221110 00 01122333333344444444445555 3444544444 678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 257 NWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 257 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
..++.++||.+.|.+.+..|++|...+.+...+...-++..+
T Consensus 412 ~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 412 FSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred HHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888887766555443
No 74
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.86 E-value=2e-20 Score=167.86 Aligned_cols=275 Identities=14% Similarity=0.088 Sum_probs=169.8
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (318)
+.....+...|.+|.+.++. +|+++.+.|++.+.+.++..++++++|+++||+||||++.++..+..+......
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~------~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 94 (420)
T PRK09528 21 FFFFIWSSWFSFFPIWLHDI------NGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFF 94 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33444556677777776653 899999999999999999999999999999999999998887666554433211
Q ss_pred ---HHhh-----HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------
Q psy16658 86 ---FAKN-----VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------- 140 (318)
Q Consensus 86 ---~~~s-----~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------- 140 (318)
.++. .....+.++..|.+.....+....+..+. + +++++.++ .++..+.|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~ 172 (420)
T PRK09528 95 IYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV-S-RRSGFEYGRARMWGSLGWALCAFIAGILFNINPQIN 172 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH-H-hhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHh
Confidence 1111 11122334444443333333333332222 1 22332222 00111111000
Q ss_pred ----------------------HHHh-----h---cc------------cc-----------------------------
Q psy16658 141 ----------------------GEIA-----E---SS------------IR----------------------------- 149 (318)
Q Consensus 141 ----------------------~~~~-----~---~~------------~~----------------------------- 149 (318)
++.. + ++ ++
T Consensus 173 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 252 (420)
T PRK09528 173 FWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFAS 252 (420)
T ss_pred HHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 00 11
Q ss_pred ------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658 150 ------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS 217 (318)
Q Consensus 150 ------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (318)
|....+..+...++.++.|++.||+++|+.+..+..+..+...+..+. .+.+.....
T Consensus 253 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----------~~~~~~~~~ 321 (420)
T PRK09528 253 FFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----------TGPLEVSIL 321 (420)
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----------ccHHHHHHH
Confidence 233444555677888999999999999999888777777766655542 223333443
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGI-AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
..+.+........... .+..|.+|++.|++..+. .+....+|..++|.+.|.+.|..||+..|...+.+..+..++.+
T Consensus 322 ~~l~g~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 322 KLLHAFEVPFLLVGVF-KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 4444444333323233 667788899999888766 67778899999999999999999999999888887776665555
Q ss_pred eecc
Q psy16658 297 VLVP 300 (318)
Q Consensus 297 ~~~~ 300 (318)
...+
T Consensus 401 ~~~~ 404 (420)
T PRK09528 401 FTLS 404 (420)
T ss_pred HHhc
Confidence 4443
No 75
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.85 E-value=4.1e-20 Score=163.70 Aligned_cols=264 Identities=16% Similarity=0.043 Sum_probs=194.3
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHH----HHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVI----LAFCIPFIIS 80 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~----~~~~~~~~~~ 80 (318)
+......+...|.+|.+.+| +|.|.+++|++.+.+.+...++++++|.++||+|||+.. ..+..+..+
T Consensus 14 ~~~~~~~~~~~p~l~~~l~~-------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 14 FGYFCAYGIFLPFFPAWLKG-------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 34445667888999999988 899999999999999999999999999999999985432 222222222
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHH---------------
Q psy16658 81 WVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMF--------------- 139 (318)
Q Consensus 81 ~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~--------------- 139 (318)
..+..+++++.+++.|.++|.+.+...|...++..|+ +++|++..+ .++..+.|.+
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~ 162 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILA 162 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 2444678999999999999999998899988887765 456665555 1111111111
Q ss_pred --------------H-HHHhhc------------------ccc-------------------------------------
Q psy16658 140 --------------I-GEIAES------------------SIR------------------------------------- 149 (318)
Q Consensus 140 --------------~-~~~~~~------------------~~~------------------------------------- 149 (318)
. ++.+++ +++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~ 242 (382)
T TIGR00902 163 ILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASAT 242 (382)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHH
Confidence 0 110000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+..++..++.+++.||+++|+.+..+.....+....+... ++.+.......+.+..++...
T Consensus 243 g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~q~l~g~~~~~~~ 311 (382)
T TIGR00902 243 GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI-----------EAFPLIFLLQILHCGTFAVCH 311 (382)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH-----------hhHHHHHHHHHHHHHHHHHHH
Confidence 567777888888899999999999999999998888888777766542 334555666777777777766
Q ss_pred cccceeeeccccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVA-LNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL 293 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 293 (318)
.... .++.+. |+++|+++.++++. ...+|..++|.+.|.+.|+.|+ ..|...+.+.+++.+
T Consensus 312 ~~~~-~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 312 LAAM-RYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHH-HHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 6655 777777 99999999999875 5678999999999999999986 667777776665543
No 76
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.85 E-value=3.3e-20 Score=169.09 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=190.2
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchhH-HHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKPV-ILAFCIPFI 78 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~ 78 (318)
+..|...+...+.+|.+.++ .|.+.+++|.+ +.....+ +..+++|+++||+ ||||. +..+.+..+
T Consensus 22 ~~~gl~~~~~~~~l~~~l~~-------~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~ 92 (491)
T PRK11010 22 FASGLPLALTSGTLQAWMTV-------ENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL 92 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------CCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence 34566777778888888888 78999999997 4444444 5899999999999 99985 667777777
Q ss_pred HHHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH----------------
Q psy16658 79 ISWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS---------------- 133 (318)
Q Consensus 79 ~~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~---------------- 133 (318)
++....++. ++++.+.+.+++.+++.+...+...++..|++|+|||+++.+ .++.
T Consensus 93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 777777775 478889999999999999999999999999999999998777 0000
Q ss_pred -----------hHHhH----HHHHHh-----hc---------------ccc-----------------------------
Q psy16658 134 -----------AIIPM----FIGEIA-----ES---------------SIR----------------------------- 149 (318)
Q Consensus 134 -----------~~~p~----~~~~~~-----~~---------------~~~----------------------------- 149 (318)
..+.. ..+|.+ ++ +++
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~ 252 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG 252 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 001110 00 000
Q ss_pred --------hHHH-HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658 150 --------GISA-IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF 220 (318)
Q Consensus 150 --------g~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (318)
|... ....++.+++.++.|++.||+++|+.+..+..+..+....+..... . ..+.+.......+
T Consensus 253 ~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~------~~~~~~l~~~~~l 325 (491)
T PRK11010 253 VGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-T------DKNLYSMGAAVFF 325 (491)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-c------cccHHHHHHHHHH
Confidence 3443 3445678899999999999999988777655544444333222111 0 0112222222233
Q ss_pred HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
.....+...... ++...+..|++.+++..|+.+....+|..+++.+.|.+.|..||+..|.+..++++.+.++.+..
T Consensus 326 ~~~~~g~~~~~~-~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 326 ENLCGGMGTAAF-VALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223 36667888898999999999999999999999999999999999888888888777776655543
No 77
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.84 E-value=5.7e-20 Score=163.52 Aligned_cols=251 Identities=18% Similarity=0.145 Sum_probs=170.6
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
.+......|.+|.+.++ +|.++.+.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+...++
T Consensus 21 ~~~~~~~~p~~~~i~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~ 93 (394)
T PRK11652 21 QMAQTIYVPAIADMARD-------LNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA 93 (394)
T ss_pred HHHHHHHhccHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhH-----------------------
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPM----------------------- 138 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~----------------------- 138 (318)
++++.+++.|++.|++.+...+....+..|.+++++|+++.+ .+...+.|.
T Consensus 94 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~ 173 (394)
T PRK11652 94 HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGA 173 (394)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 999999999999999988888888889999999999987765 000000000
Q ss_pred --------HHHHHhh----c-----------ccc--------------------------------------hHHHHHHH
Q psy16658 139 --------FIGEIAE----S-----------SIR--------------------------------------GISAIIVG 157 (318)
Q Consensus 139 --------~~~~~~~----~-----------~~~--------------------------------------g~~~~~~~ 157 (318)
..+|.++ + +++ |.......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 253 (394)
T PRK11652 174 GVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPI 253 (394)
T ss_pred HHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHH
Confidence 0011100 0 000 23334445
Q ss_pred HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeee
Q psy16658 158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMV 237 (318)
Q Consensus 158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (318)
.+..++..+.+++.||.+++. .............+....... ....+.......+.+.+.+...+... .+.
T Consensus 254 ~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 324 (394)
T PRK11652 254 PAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPGWFG------VMNVWTLLVPAALFFFGAGMLFPLAT-SGA 324 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 555666677777777776322 222222222222211111000 11223334444555555555444444 666
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658 238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL 275 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 275 (318)
.|..| ++++++.++.+....+|..+++.+.+.+.++.
T Consensus 325 ~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 361 (394)
T PRK11652 325 MEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG 361 (394)
T ss_pred Hhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 67776 56899999999999999999999988776553
No 78
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.83 E-value=6.4e-20 Score=161.46 Aligned_cols=236 Identities=17% Similarity=0.137 Sum_probs=167.8
Q ss_pred ccccccccccccc-ccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPI-LTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 8 ~~~~~~~~~~lp~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
........+.+|. +.++ +|+++.+.+++.+.+.++..++.+++|+++||+|||+.+.++..+..++.+++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~-------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDD-------LGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHhHHhhhHHHHHH-------hCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 3344556778885 6666 9999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------------------hhhH--------------
Q psy16658 87 AK-NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------------------GGLS-------------- 133 (318)
Q Consensus 87 ~~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------------------~~~~-------------- 133 (318)
++ +++.+++.|+++|++.+ ..+...+++.|++|+|+|+++++ .+..
T Consensus 87 ~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 87 AVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 99 99999999999999855 45667899999999999998877 0000
Q ss_pred --------hHHhHHH--------HH--------Hhhc--------------c------cc--------------------
Q psy16658 134 --------AIIPMFI--------GE--------IAES--------------S------IR-------------------- 149 (318)
Q Consensus 134 --------~~~p~~~--------~~--------~~~~--------------~------~~-------------------- 149 (318)
.....+. +| .+.+ + ++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLGVS 245 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 0000000 00 0000 0 00
Q ss_pred ------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccc
Q psy16658 150 ------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSIS 211 (318)
Q Consensus 150 ------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (318)
|....+..+.+++++++.|++.||+++|+.+..+......+..++...... ....
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 318 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS-------PLSL 318 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC-------cchH
Confidence 356667778888999999999999999987776665555544444332100 0012
Q ss_pred hhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHH
Q psy16658 212 FLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWIS 260 (318)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g 260 (318)
+.......+.....+....... ....|..| +++|+++|+.+..+++|
T Consensus 319 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 319 AVFIVLFVALFFFSGAGNGSTF-ALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhccccchhh-hcchhhch-hhcccHHHHHHHhccCC
Confidence 2223333333344444444333 67778776 57999999999887765
No 79
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.83 E-value=2.6e-19 Score=159.73 Aligned_cols=271 Identities=15% Similarity=0.137 Sum_probs=179.4
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchh-HHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKP-VILAFCIPFII 79 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~ 79 (318)
..|+..+.....+|.+.++ .|.+.+++|++...... .+..+++|+++||+ |||| .+.++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~l~~-------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTV-------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHhhhHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 4566777788889999999 89999999999776665 58899999999999 8876 68888888888
Q ss_pred HHHHHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hh-----------
Q psy16658 80 SWVLILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GG----------- 131 (318)
Q Consensus 80 ~~~~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~----------- 131 (318)
+.....+. ++++.+.+..++.+...+...++..+++.|++|+|||+++.+ .+
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw 160 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW 160 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH
Confidence 88887776 357778888888888888889999999999999999998777 00
Q ss_pred -----hHh---H---HhHH-HHHHh-----hc--------------ccc-------------------------------
Q psy16658 132 -----LSA---I---IPMF-IGEIA-----ES--------------SIR------------------------------- 149 (318)
Q Consensus 132 -----~~~---~---~p~~-~~~~~-----~~--------------~~~------------------------------- 149 (318)
..+ . .+.. .+|.+ ++ +++
T Consensus 161 ~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~ 240 (402)
T PRK11902 161 GNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGA 240 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 000 0 0000 01110 00 000
Q ss_pred -------hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH-
Q psy16658 150 -------GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF- 220 (318)
Q Consensus 150 -------g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (318)
|......+ .+.+++.++.+++.||+++|+.+..+.....+..+.+....... .+.+.......+
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~-------~~~~~~~~~~~~~ 313 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP-------KHLWTMALAIGIE 313 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHH
Confidence 23332323 35778899999999999999887766555544433332211110 112222222222
Q ss_pred ---HHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 221 ---FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 221 ---~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
.+..... .......++.+.+|.+. .+..+....++...++.+.|.+.|+.||+..|...+.+++++.++.+.
T Consensus 314 ~~~~g~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 314 NLCGGMGTAA-FVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHH-HHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 22233366667666554 455555666777767778999999999998888887777776555433
No 80
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.82 E-value=5.9e-19 Score=159.12 Aligned_cols=253 Identities=17% Similarity=0.177 Sum_probs=174.6
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchh-HHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKP-VILAFCIPFIISWV 82 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~ 82 (318)
+...+...+.++.+..+. +|+++.+.|++.++..+...+..|+.|+++|| +|||| .++.+....+++.+
T Consensus 12 ~~~~~~~~~~l~~~~~~~------~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~ 85 (437)
T TIGR00792 12 NFIFAIVSTYLLFFYTDV------LGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLV 85 (437)
T ss_pred HHHHHHHHHHHHHHHHHc------cCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHH
Confidence 333444444444444432 89999999999999999999999999999998 67755 56778888888888
Q ss_pred HHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH---------hhhH--hHHhHH-----
Q psy16658 83 LILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT---------GGLS--AIIPMF----- 139 (318)
Q Consensus 83 ~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~---------~~~~--~~~p~~----- 139 (318)
++...++ ...+++.+++.+++.+...+...++..|.. +++||++..+ .... ...|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~ 165 (437)
T TIGR00792 86 LLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG 165 (437)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7777654 456677888899988888888888999987 5688887766 0000 000110
Q ss_pred ------------H----------------HHHh----h--cc-------------cc-----------------------
Q psy16658 140 ------------I----------------GEIA----E--SS-------------IR----------------------- 149 (318)
Q Consensus 140 ------------~----------------~~~~----~--~~-------------~~----------------------- 149 (318)
. +|.+ + ++ ++
T Consensus 166 ~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (437)
T TIGR00792 166 GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQ 245 (437)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchh
Confidence 0 2111 0 00 11
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHH
Q psy16658 150 --------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPL 215 (318)
Q Consensus 150 --------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (318)
+....+..+..+++.++.+++.||+|+|+.+..+..+..++.+.+.+.. ...+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 315 (437)
T TIGR00792 246 VYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG----------SNLPLIL 315 (437)
T ss_pred heeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----------hhHHHHH
Confidence 2445556788888999999999999999999888777766665544320 1122333
Q ss_pred HHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 216 LSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
....+.+.+.+... +..++..+|..| ++.+|+..|+.+....++..+++.+.|.+.+..|+
T Consensus 316 ~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 316 VLIILAGFGQNFVT-GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444444444333 334466666654 55679999999999999999999999999998776
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.82 E-value=9.4e-19 Score=155.06 Aligned_cols=261 Identities=14% Similarity=0.079 Sum_probs=178.4
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcch----hHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRK----PVILAFCIPFIISW 81 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~ 81 (318)
.+..+.+...|.+|.+.+| ++.|.+++|++.+++.++..++++++|++.||+||| +.+.+...+. ..
T Consensus 15 ~~~~~~g~~~p~l~~~l~~-------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~ 85 (382)
T PRK11128 15 GYFFAYGVFLPFWSVWLKG-------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AV 85 (382)
T ss_pred HHHHHHHHHhhhHHHHHHh-------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HH
Confidence 3445678888999999988 899999999999999999999999999999999984 3333222221 22
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH----------------------
Q psy16658 82 VLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS---------------------- 133 (318)
Q Consensus 82 ~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~---------------------- 133 (318)
.....+++++.+++.|++.|++.+...|...++..++.+ +|++..+ .+..
T Consensus 86 ~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 86 AFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 233446889999999999999999999988888887743 3443322 0000
Q ss_pred ----hHHhHHH----HHHh-----hcc-------------cc-------------------------------------h
Q psy16658 134 ----AIIPMFI----GEIA-----ESS-------------IR-------------------------------------G 150 (318)
Q Consensus 134 ----~~~p~~~----~~~~-----~~~-------------~~-------------------------------------g 150 (318)
...+.+. +|.+ +++ ++ |
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g 243 (382)
T PRK11128 164 LTAGVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIG 243 (382)
T ss_pred HHHHHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHH
Confidence 1111110 1100 000 00 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.......+..++..++.+++.||+++|+.+..+.....++...+... ++.+.......+.+........
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~ 312 (382)
T PRK11128 244 YLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST-----------TALPWLIVIQILHCGTFTVCHL 312 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh-----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 55566677788888899999999999999888877777766555432 2344455556666666665444
Q ss_pred ccceeeeccccchhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVAL-NWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG 291 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 291 (318)
... .+..+. +++++++..+..+.. ...|..++|.+.|.+.|+.|. ..+...+.+.+.+
T Consensus 313 ~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T PRK11128 313 AAM-RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA 371 (382)
T ss_pred HHH-HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 444 566565 566678899988744 456778999999999999887 4555555554443
No 82
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.82 E-value=1.6e-18 Score=173.87 Aligned_cols=242 Identities=17% Similarity=0.125 Sum_probs=172.0
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL---FAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
+....+++.+++.++..++++++|+++||+|||++++++.++..+..++.. .+++++.+++.|+++|++.+...++.
T Consensus 45 ~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 124 (1146)
T PRK08633 45 QVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAK 124 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHH
Confidence 344579999999999999999999999999999999998877666555444 45789999999999999999999999
Q ss_pred chhhhhccCchhhhHHHH--------------hhhHhHHhH-----------------HH---------------HHHhh
Q psy16658 112 PMFIGEIAESSIRAGVAT--------------GGLSAIIPM-----------------FI---------------GEIAE 145 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~--------------~~~~~~~p~-----------------~~---------------~~~~~ 145 (318)
.+++.|++|+++|+++++ .+...+... +. ++..+
T Consensus 125 ~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1146)
T PRK08633 125 YGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPA 204 (1146)
T ss_pred HhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence 999999999999999888 000000000 00 10000
Q ss_pred ---c---------------------ccc---------------------------------------hHHHHHHHHHHHH
Q psy16658 146 ---S---------------------SIR---------------------------------------GISAIIVGIVQFI 162 (318)
Q Consensus 146 ---~---------------------~~~---------------------------------------g~~~~~~~~~~~~ 162 (318)
+ +++ |++.....++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~ 284 (1146)
T PRK08633 205 AAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGI 284 (1146)
T ss_pred CCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 0 000 3455666777788
Q ss_pred HHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658 163 MTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA 242 (318)
Q Consensus 163 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (318)
+.++.+++.||+++++.+.++.+..+++.+++... ...+..++..++++.+.+....+.. +++.+..|
T Consensus 285 g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p 352 (1146)
T PRK08633 285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA-----------PSLASVLVLFFLFGFSAGLFIVPLN-ALIQFRAP 352 (1146)
T ss_pred HHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHhhHHHH-HHHhhcCC
Confidence 99999999999998888877776666666555442 1233444555555555555444444 77788999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHH
Q psy16658 243 PEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVIC 288 (318)
Q Consensus 243 ~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~ 288 (318)
++.|++++|+.+.+..++..+++.+.+.+... .++...+.+.+.+.
T Consensus 353 ~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 399 (1146)
T PRK08633 353 EKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT 399 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999988887776655432 23333444444333
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.81 E-value=1.3e-18 Score=154.87 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=178.0
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (318)
+.....+...|.+|.+.++. +|.++.+.|++.+.+.++..++++++|+++||+||||.++.+....+++.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~ 86 (396)
T TIGR00882 13 LYFFIMSAYFPFFPIWLHDV------NGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF 86 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888776653 899999999999999999999999999999999999999887666655443221
Q ss_pred ---HH-----hhHHHHHHHHHHHHhhccccccccchhhhhccCchhh--hH--HHHhhhHh-------------------
Q psy16658 86 ---FA-----KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIR--AG--VATGGLSA------------------- 134 (318)
Q Consensus 86 ---~~-----~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r--~~--~~~~~~~~------------------- 134 (318)
+. +.+..+++.|++.|++.+...+....+..|..+++.+ ++ ..+.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~ 166 (396)
T TIGR00882 87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFW 166 (396)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHH
Confidence 11 2234456778899999888888888777775443311 11 11100000
Q ss_pred ---HHhH------HH--HH---Hh---------hcc-----------cc-------------------------------
Q psy16658 135 ---IIPM------FI--GE---IA---------ESS-----------IR------------------------------- 149 (318)
Q Consensus 135 ---~~p~------~~--~~---~~---------~~~-----------~~------------------------------- 149 (318)
.++. .. +| .+ +++ ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~ 246 (396)
T TIGR00882 167 LGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF 246 (396)
T ss_pred HHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 00 11 00 000 11
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHH
Q psy16658 150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVI 219 (318)
Q Consensus 150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (318)
|....+..+...++.+..+++.||+++|+.+..+..+.++...+.... .+.+.......
T Consensus 247 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~-----------~~~~~~~~~~~ 315 (396)
T TIGR00882 247 ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA-----------TTALEVVILKM 315 (396)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc-----------CChHHHHHHHH
Confidence 233344445566777888999999999999888777666655543331 22333344444
Q ss_pred HHHHHHHhcccccceeeeccccchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGI-AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.+........ ....+..+..|++.+++..+. .+....+|..+++.+.|.+.|..|++..|.+.+.+..+..++..
T Consensus 316 l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 316 LHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 44443332222 222455666788888887766 67788999999999999999999999999888887766655543
No 84
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.80 E-value=2.4e-18 Score=156.19 Aligned_cols=286 Identities=12% Similarity=0.056 Sum_probs=199.4
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILF 86 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~ 86 (318)
.+.+....+.+|.+.++ ..++|++..+.+++.+.+.++..++++++|+++|| +||||++.++..+.+++.++.++
T Consensus 23 ~~~~~~~~~~L~~yl~~----~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~ 98 (475)
T TIGR00924 23 RFSYYGMQGILAVYLVQ----QAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM 98 (475)
T ss_pred HHHHHHHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Confidence 34445566777777654 12378999999999999999999999999999999 89999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHhhccccccccchhhhhccCchh---hhHHHH------hhhHhHHhH-------------------
Q psy16658 87 AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSI---RAGVAT------GGLSAIIPM------------------- 138 (318)
Q Consensus 87 ~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~---r~~~~~------~~~~~~~p~------------------- 138 (318)
+++++.+.+.|.+.|++.|...+...++++|++|+++ |+++.+ .++..+.|.
T Consensus 99 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 99 SIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred cccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999999999999999999999999999998764 655444 000000000
Q ss_pred ----------HH-H---------------HH-------------------------------------------------
Q psy16658 139 ----------FI-G---------------EI------------------------------------------------- 143 (318)
Q Consensus 139 ----------~~-~---------------~~------------------------------------------------- 143 (318)
.. . +.
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (475)
T TIGR00924 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA 258 (475)
T ss_pred HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00
Q ss_pred hh------cccc--------------------------------------------hHHHHHHHHHHHHHHHHHHH----
Q psy16658 144 AE------SSIR--------------------------------------------GISAIIVGIVQFIMTALSVV---- 169 (318)
Q Consensus 144 ~~------~~~~--------------------------------------------g~~~~~~~~~~~~~~~~~g~---- 169 (318)
.+ ++++ +.+..++.+.-++..++..+
T Consensus 259 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~ 338 (475)
T TIGR00924 259 FKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTR 338 (475)
T ss_pred HhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 00 0011 25566666666666666444
Q ss_pred Hhhc-cCCeehh--hhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhh
Q psy16658 170 LVDK-AGRRILL--LLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVK 246 (318)
Q Consensus 170 l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 246 (318)
+.|| .+.+... ..+.++.++++..+......... ....+.++.+....+.+.+.....+... ++..|..|++.|
T Consensus 339 l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~--~~~~s~~~~i~~~~~~~~ge~~~~p~~~-~~~~~~aP~~~~ 415 (475)
T TIGR00924 339 LGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA--GGLTSPWFMVLIYLFQTLGELMISPLGL-SWWTKIAPQRLM 415 (475)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCccCHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhCCHHHH
Confidence 3333 2223333 56677777776666543221111 1124556666677777776666544444 888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 247 GSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 247 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
|+++|+......+|..+++.+.....+..++...+...+....+..++.++..|
T Consensus 416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887777767766676666666655555544433
No 85
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.80 E-value=3.7e-18 Score=171.00 Aligned_cols=250 Identities=12% Similarity=0.070 Sum_probs=170.1
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccch
Q psy16658 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILA---FCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPM 113 (318)
Q Consensus 37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~ 113 (318)
...++..+++.+++.+.++++|+++||+|||+++.. ..+......+.....+|++.+++.|+++|++.+...|+..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 457888999999999999999999999999997543 22233333333334589999999999999999999999999
Q ss_pred hhhhccCchhhhHHHH------hhhHhHHhHHH------------------------------HHHhh-----c------
Q psy16658 114 FIGEIAESSIRAGVAT------GGLSAIIPMFI------------------------------GEIAE-----S------ 146 (318)
Q Consensus 114 ~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------------------~~~~~-----~------ 146 (318)
++.|++|+++|+++++ .+...+.|.+. ++.++ +
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNII 211 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchH
Confidence 9999999999999888 00000000000 00000 0
Q ss_pred -----------ccc--------------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658 147 -----------SIR--------------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR 177 (318)
Q Consensus 147 -----------~~~--------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~ 177 (318)
+++ |......+++.+++.++.|++.||..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~ 291 (1140)
T PRK06814 212 RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL 291 (1140)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 000 5777888899999999999999888777
Q ss_pred ehhhhhhHHHHHHHHHHHHhhhhccCCC---------CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhh
Q psy16658 178 ILLLLSDFVMALCLGVLGFYFYMMEDGK---------DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGS 248 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 248 (318)
+.+..+.++.+++.+.+.+......... ......+...+..++++.+.+....+.. +.+.+..|++.||+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~~~G~ 370 (1140)
T PRK06814 292 LYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLF-AALQAWANPAHRAR 370 (1140)
T ss_pred eeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHH-HHHHhhCCccccee
Confidence 7666555555544443333100000000 0012234445555556665555555544 78889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHH
Q psy16658 249 ATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVI 287 (318)
Q Consensus 249 ~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~ 287 (318)
++|..+....++..+++.+.+.+.+. .++...+.+.+.+
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999999999999999999998754 3454444444443
No 86
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.78 E-value=1.2e-17 Score=151.90 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=181.2
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhhcccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKNVLM-LFAARFIAGVATGGLSA 109 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s~~~-l~~~r~l~G~~~g~~~~ 109 (318)
+|.++++.+++.+.+.....+..+++|+++|| +||||+++++.+++.++++.++++++... +.+.|.++|+|.|...|
T Consensus 45 lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~ 124 (489)
T PRK10207 45 LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKA 124 (489)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccC
Confidence 89999999999999998888889999999999 99999999999999999999999876444 55899999999999999
Q ss_pred ccchhhhhccCchh--hhHHHH------hhhHhHHhHH------------------------H----------H------
Q psy16658 110 IIPMFIGEIAESSI--RAGVAT------GGLSAIIPMF------------------------I----------G------ 141 (318)
Q Consensus 110 ~~~~~i~~~~~~~~--r~~~~~------~~~~~~~p~~------------------------~----------~------ 141 (318)
...+++.|.+|+++ |+++++ .++..+.|.+ + +
T Consensus 125 ~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 204 (489)
T PRK10207 125 NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEP 204 (489)
T ss_pred CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCC
Confidence 99999999998875 344333 0000000000 0 0
Q ss_pred ----------------------------------------------------HHhhc---ccc-----------------
Q psy16658 142 ----------------------------------------------------EIAES---SIR----------------- 149 (318)
Q Consensus 142 ----------------------------------------------------~~~~~---~~~----------------- 149 (318)
+.+.+ ++|
T Consensus 205 ~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~ 284 (489)
T PRK10207 205 DHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRNKMFVAFVLMLEAVVFYIL 284 (489)
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 011
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeeh-------hhhhhHHHHHHHHHHH
Q psy16658 150 ---------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRIL-------LLLSDFVMALCLGVLG 195 (318)
Q Consensus 150 ---------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~ 195 (318)
.....++.+..++..++.+++.||.++|+. +..+.++.+++++.+.
T Consensus 285 ~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 285 YAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 123333456666778888999999998873 6667777666655443
Q ss_pred HhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q psy16658 196 FYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-- 273 (318)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-- 273 (318)
.......... ...+.++......+.+.+.....++.. ..+.+..|++.++.++|+.+....+|+.++..+......
T Consensus 365 ~~~~~~~~~~-~~~s~~~~i~~~~l~g~Ge~~~~~~g~-~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~ 442 (489)
T PRK10207 365 AAGMWFADAQ-GLTSPWFIVLVYLFQSLGELFISALGL-AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPD 442 (489)
T ss_pred HHHHhhcCCC-CccCHHHHHHHHHHHHHHHHHHhHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2111111111 122345556666667777666555544 777788999999999999999999999999887764421
Q ss_pred --------HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 274 --------NLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 274 --------~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
...+.+.|...+....++.++.+...
T Consensus 443 ~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 443 NITDPLETLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11234556666666655555554433
No 87
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.78 E-value=5.8e-18 Score=143.58 Aligned_cols=266 Identities=16% Similarity=0.155 Sum_probs=204.4
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
++-|+......+++|.+.+. ++++..|.+++..+++.++.+.+++.|++.+|+|+|+-++.+..++++++.+.
T Consensus 23 fl~G~~~~l~diLip~l~~~-------f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF 95 (422)
T COG0738 23 FLWGFITCLNDILIPHLKEV-------FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALF 95 (422)
T ss_pred HHHHHHhhcchhhHHHHHHH-------hCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34566677778889999888 99999999999999999999999999999999999999999999999999988
Q ss_pred H---HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH---------------
Q psy16658 85 L---FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI--------------- 140 (318)
Q Consensus 85 ~---~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~--------------- 140 (318)
. ...+|..++.+-++.|.|.+...++.++++....|+++..+.+. +++....|.+.
T Consensus 96 ~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~ 175 (422)
T COG0738 96 WPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAA 175 (422)
T ss_pred hhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHH
Confidence 5 55789999999999999999999999999999999965554444 33444444333
Q ss_pred ------------------------------------HHHhh-------cc---------cc-------------------
Q psy16658 141 ------------------------------------GEIAE-------SS---------IR------------------- 149 (318)
Q Consensus 141 ------------------------------------~~~~~-------~~---------~~------------------- 149 (318)
++.++ ++ ++
T Consensus 176 ~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~ 255 (422)
T COG0738 176 QILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAI 255 (422)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHH
Confidence 00000 00 00
Q ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCccc
Q psy16658 150 -------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210 (318)
Q Consensus 150 -------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (318)
.........+.++|++++.++.+|+...|.+....++..+.++...+. .
T Consensus 256 gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~------------~ 323 (422)
T COG0738 256 GSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI------------G 323 (422)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh------------c
Confidence 377788889999999999999999999999988776665555555542 1
Q ss_pred chhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q psy16658 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFV 290 (318)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 290 (318)
..+.+....+.+.+.+..++.+. +...+..| + ..+..|....+..+|+++-|++.|++.|+.|....+...-..|.+
T Consensus 324 g~v~~~~l~~ig~F~simfPTIf-slal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~l 400 (422)
T COG0738 324 GVVALYALFLIGLFNSIMFPTIF-SLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYL 400 (422)
T ss_pred ChHHHHHHHHHHHHhHHHHHHHH-HHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23445566666666666665555 77777777 3 355666677788899999999999999999876666655555555
Q ss_pred HH
Q psy16658 291 GT 292 (318)
Q Consensus 291 ~~ 292 (318)
..
T Consensus 401 yV 402 (422)
T COG0738 401 YV 402 (422)
T ss_pred HH
Confidence 44
No 88
>KOG2504|consensus
Probab=99.76 E-value=6.8e-18 Score=152.71 Aligned_cols=253 Identities=19% Similarity=0.253 Sum_probs=190.8
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhhccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR-FIAGVATGGLSAI 110 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r-~l~G~~~g~~~~~ 110 (318)
++.+.++++|+.++......+..|+.+.+.||+|.|++.+.+.++..++.++.++++++|++++.. ++.|+|.|..+..
T Consensus 76 f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~p 155 (509)
T KOG2504|consen 76 FGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLP 155 (509)
T ss_pred hCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcc
Confidence 899999999999999999999999999999999999999999999999999999999999988865 8999999999999
Q ss_pred cchhhhhccCchhhhHHHH------hhhHhHHhHHH------------------------------HH------------
Q psy16658 111 IPMFIGEIAESSIRAGVAT------GGLSAIIPMFI------------------------------GE------------ 142 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~------------------------------~~------------ 142 (318)
...++..+++ |+|+.+.+ +++..+.|.+. ++
T Consensus 156 aiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~ 234 (509)
T KOG2504|consen 156 AVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKD 234 (509)
T ss_pred hhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhh
Confidence 9999998876 55888887 22222222222 00
Q ss_pred ----------------Hhh------ccc----------------c-----------------------------------
Q psy16658 143 ----------------IAE------SSI----------------R----------------------------------- 149 (318)
Q Consensus 143 ----------------~~~------~~~----------------~----------------------------------- 149 (318)
.+. ..+ +
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 235 LRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGF 314 (509)
T ss_pred hccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHH
Confidence 000 000 0
Q ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHhhccCCee--hhhhhhHHHHHHHHHHHHhhhhccCCCC
Q psy16658 150 ---------------------GISAIIVGIVQFIMTALSVVLVDKAGRRI--LLLLSDFVMALCLGVLGFYFYMMEDGKD 206 (318)
Q Consensus 150 ---------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (318)
.....+.++..++++++.|+++|+...++ ...++.+..+++...+...
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--------- 385 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--------- 385 (509)
T ss_pred HHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh---------
Confidence 38888999999999999999999988443 3344444444444333331
Q ss_pred CcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHH
Q psy16658 207 VSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFS 285 (318)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 285 (318)
...+.......+++...+. +.......+.|+.+.++-..+.|+...+..++..++|++.|.+.|..| |...|+..+
T Consensus 386 --~~~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g 462 (509)
T KOG2504|consen 386 --TTYVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG 462 (509)
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence 2233444444455544444 333333567899999999999999999999999999999999999988 877887777
Q ss_pred HHHHHHHHHhhe
Q psy16658 286 VICFVGTLFTFV 297 (318)
Q Consensus 286 ~~~~~~~~~~~~ 297 (318)
....++....++
T Consensus 463 ~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 463 LCFLLSAVLLLI 474 (509)
T ss_pred hHHHHHHHHHHH
Confidence 766666544433
No 89
>KOG2615|consensus
Probab=99.75 E-value=9.2e-18 Score=140.84 Aligned_cols=97 Identities=26% Similarity=0.427 Sum_probs=89.1
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
.+.+..-.|.+.+.+.+...++++.+|.++||+|||.++.+|....++...+.+.++|+..+++.|++.|+..| .....
T Consensus 63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~ 141 (451)
T KOG2615|consen 63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVI 141 (451)
T ss_pred ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHH
Confidence 34566677999999999999999999999999999999999999999999999999999777788999999866 56788
Q ss_pred chhhhhccCchhhhHHHH
Q psy16658 112 PMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~ 129 (318)
.++++|.+++|+|+++++
T Consensus 142 rAiisdV~sek~r~l~ms 159 (451)
T KOG2615|consen 142 RAIISDVVSEKYRPLGMS 159 (451)
T ss_pred HHHHHhhcChhhccceee
Confidence 899999999999999888
No 90
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.75 E-value=1e-16 Score=141.53 Aligned_cols=278 Identities=16% Similarity=0.186 Sum_probs=196.7
Q ss_pred ccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-chhHHHHHHHHHHHHHHHHH
Q psy16658 7 IGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-RKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 7 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~ 85 (318)
.-...|...|.+|.+.++ .|.|..|+|.+.+...+...++++++|.++||.+ +||.+.++.++.++......
T Consensus 14 ~f~~~G~~~p~~~~~L~~-------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 14 YFFAYGAFLPYLPLYLES-------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888888 8999999999999999999999999999999986 57788888888888777777
Q ss_pred HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhh----HHHHhhhHhHH-------------------------
Q psy16658 86 FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA----GVATGGLSAII------------------------- 136 (318)
Q Consensus 86 ~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~----~~~~~~~~~~~------------------------- 136 (318)
..++++.++...++..+......|...++..+...++++. |..|.++..+.
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 166 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAA 166 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 8889998888888888888888888888888887643321 22220000000
Q ss_pred ---------hHHHHHHh----hc-c--------------cc--------------------------------------h
Q psy16658 137 ---------PMFIGEIA----ES-S--------------IR--------------------------------------G 150 (318)
Q Consensus 137 ---------p~~~~~~~----~~-~--------------~~--------------------------------------g 150 (318)
...+++.. ++ + ++ |
T Consensus 167 ~~~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g 246 (400)
T PF03825_consen 167 ILSLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIG 246 (400)
T ss_pred HHHHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHH
Confidence 00001100 00 0 00 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH----HHHHHHHHH
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS----VIFFIVMFS 226 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 226 (318)
....+..+..++.-...+++.+|+|.|+.+.++....++=..+.... +.+.+..... ..+.+..++
T Consensus 247 ~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~----------~~~~~~~~~~~~l~q~lhG~tf~ 316 (400)
T PF03825_consen 247 ILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF----------SDPWPFIVALQLLGQLLHGLTFG 316 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHhhhhHHHH
Confidence 45556667888888899999999999999999887777776666552 1112222222 234666666
Q ss_pred hcccccceeeeccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhh------HHHHHHHHHHHHHHHhheec
Q psy16658 227 LGYGPIPWMMVGELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGSAA------TFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~ 299 (318)
..+.... .++.+..|++.|+++.++++... .+|..+|..+.|++.|+.|.+. .+.+.+++..+..++.+++.
T Consensus 317 ~~~~a~~-~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 317 LFHAASV-RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHH-HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6555555 88889999999999999998875 6899999999999999987553 33444444455555555555
Q ss_pred cCC
Q psy16658 300 PET 302 (318)
Q Consensus 300 ~~~ 302 (318)
||+
T Consensus 396 k~~ 398 (400)
T PF03825_consen 396 KPK 398 (400)
T ss_pred cCC
Confidence 544
No 91
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.75 E-value=2.9e-17 Score=144.20 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=160.1
Q ss_pred ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-----cchhH-HHHHHHHHHHHHH
Q psy16658 9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-----GRKPV-ILAFCIPFIISWV 82 (318)
Q Consensus 9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~ 82 (318)
+-.+...+.+|.+.+| +|+|.+++|+.... .+...+ .+++|++.||+ ||||. ++.+..+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 2 LPLGLVGNTLPYWLRS-------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred CCchhHHhHHHHHHHH-------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence 3456677888999888 99999999999655 555555 99999999998 89996 5677777777777
Q ss_pred HHHHH---hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH--------------hhhH---hHHh-----
Q psy16658 83 LILFA---KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT--------------GGLS---AIIP----- 137 (318)
Q Consensus 83 ~~~~~---~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~--------------~~~~---~~~p----- 137 (318)
..++. .+.+.+....++.+++.+...++..+++.|++|+|+|+++.+ .+.. ....
T Consensus 73 ~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 73 ILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 77776 466677777888899888889999999999999999998877 0000 0000
Q ss_pred -------H--------------H--HHHHhh------c-------------ccc--------------------------
Q psy16658 138 -------M--------------F--IGEIAE------S-------------SIR-------------------------- 149 (318)
Q Consensus 138 -------~--------------~--~~~~~~------~-------------~~~-------------------------- 149 (318)
. . .+|.++ + +++
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLT 232 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 011100 0 000
Q ss_pred --------------hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658 150 --------------GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP 214 (318)
Q Consensus 150 --------------g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (318)
|......+ +..+++.++.+++.||+|+|+.+..+.++..+....+.+...............+..
T Consensus 233 ~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (356)
T TIGR00901 233 TLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLML 312 (356)
T ss_pred HHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 23333333 456788999999999999999988777776665554433211100000000112333
Q ss_pred HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHH
Q psy16658 215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNW 258 (318)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 258 (318)
.....+.+.+.+....... +++.|..|+++||+..|+.+...+
T Consensus 313 ~~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 313 FLTITLEAVTGGLGTVAFV-AFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHHHhcCCCccHHHHHHHHHHHh
Confidence 3344444555555444444 888999999999999999887654
No 92
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.72 E-value=2.6e-16 Score=143.80 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=87.0
Q ss_pred ccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHh-hH
Q psy16658 13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAK-NV 90 (318)
Q Consensus 13 ~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-s~ 90 (318)
...+.+|.+..+. +|+++++.+++.+.+........+++|+++|| +|||+++..+..+..++..++++++ +.
T Consensus 39 ~~~~~l~~yl~~~------lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~ 112 (500)
T PRK09584 39 GLQGIMAVYLVKQ------LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDA 112 (500)
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3444555555332 89999999998888776666667899999999 5999999999999999999998874 56
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSI 123 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 123 (318)
+.+.+.|+++|++.|...+...+++.|++|+++
T Consensus 113 ~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 113 GIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD 145 (500)
T ss_pred HHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence 677788999999999999999999999998654
No 93
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.69 E-value=1.3e-15 Score=135.33 Aligned_cols=276 Identities=11% Similarity=-0.002 Sum_probs=169.5
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHH--HHHHHHHHhhhhhhhh-hhhhhhcchhHHHHHHHHH-HHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLI--GSLIAIGAIFGALPAG-SIADKFGRKPVILAFCIPF-IIS 80 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~--~s~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~-~~~ 80 (318)
+..|+..+...|.+|.+.+| .|.+.+++|++ .+...+...+..|+++ +..||+||||.+++...+. ...
T Consensus 11 ~~~g~~~~~~~p~lp~~l~~-------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~ 83 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLRE-------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC 83 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence 44567777888999999999 89999999997 4677888888888885 4799999999875555332 212
Q ss_pred HHHHH---HHhh-HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhh------------------
Q psy16658 81 WVLIL---FAKN-VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGL------------------ 132 (318)
Q Consensus 81 ~~~~~---~~~s-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~------------------ 132 (318)
..... ..++ ...++...++.++..+...+...++..|..++|+++...+ .++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~ 163 (390)
T TIGR02718 84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQR 163 (390)
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 22222 1222 3334445556667777777888888999998888876443 000
Q ss_pred -----------HhHHhH-HH-HHHh-h-c--c-----------cc-----------------------------------
Q psy16658 133 -----------SAIIPM-FI-GEIA-E-S--S-----------IR----------------------------------- 149 (318)
Q Consensus 133 -----------~~~~p~-~~-~~~~-~-~--~-----------~~----------------------------------- 149 (318)
....+. .. ++.+ + + + ++
T Consensus 164 ~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~ 243 (390)
T TIGR02718 164 PAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLE 243 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHH
Confidence 001110 00 1100 0 0 0 01
Q ss_pred --hHHHHHHH-HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658 150 --GISAIIVG-IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226 (318)
Q Consensus 150 --g~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (318)
|......+ ...+++.++.|++.||+++|+.+..+....++............. ....+.......+.....+
T Consensus 244 ~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 244 WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL-----APGIAVAWSCSAFGSLITG 318 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc-----CCcHHHHHHHHHHHHHHHH
Confidence 34444444 355667889999999999999888776554333222221111000 0111111222222222233
Q ss_pred hcccccceeeeccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658 227 LGYGPIPWMMVGELFAP-EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL 293 (318)
Q Consensus 227 ~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 293 (318)
....... ....+..++ +.+++.++..+...++|..++|.+.|.+.|+.|++..|...+.+.+++.+
T Consensus 319 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 319 ITSVAIY-TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHH-HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 3333333 343344554 78999999999999999999999999999999998888777666655443
No 94
>PRK09669 putative symporter YagG; Provisional
Probab=99.69 E-value=2.4e-15 Score=135.95 Aligned_cols=236 Identities=13% Similarity=0.141 Sum_probs=155.2
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWVLILFAKN------VLMLFAARFIA 100 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~ 100 (318)
+|++..++|.+.++..+...+..|+.|+++|| +||||. ++.+....++...+....++ ...+++..++.
T Consensus 40 ~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~ 119 (444)
T PRK09669 40 FGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILL 119 (444)
T ss_pred cCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 787654 55677777777665554443 45566666677
Q ss_pred Hhhccccccccchhhhhcc-CchhhhHHHH------hhhHh-----HHhHHH----------------------------
Q psy16658 101 GVATGGLSAIIPMFIGEIA-ESSIRAGVAT------GGLSA-----IIPMFI---------------------------- 140 (318)
Q Consensus 101 G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~~~~~-----~~p~~~---------------------------- 140 (318)
+.+.........++.+|+. +++||++..+ .++.. ..|...
T Consensus 120 ~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~ 199 (444)
T PRK09669 120 SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 7776777777789999998 5677886544 00000 001000
Q ss_pred -----HHH---hhc-------------ccc-------------------------------------hHHHHHHHHHHHH
Q psy16658 141 -----GEI---AES-------------SIR-------------------------------------GISAIIVGIVQFI 162 (318)
Q Consensus 141 -----~~~---~~~-------------~~~-------------------------------------g~~~~~~~~~~~~ 162 (318)
+|. +++ +|+ +.......+..++
T Consensus 200 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii 279 (444)
T PRK09669 200 CFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLF 279 (444)
T ss_pred HhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHH
Confidence 111 000 011 1333344566677
Q ss_pred HHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658 163 MTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA 242 (318)
Q Consensus 163 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (318)
+.++.+++.||+|+|+.+..+.....+....+... . ....+.......+.+.+.+. ..+..+++++|..+
T Consensus 280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d 349 (444)
T PRK09669 280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI--P-------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVD 349 (444)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--C-------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhh
Confidence 88889999999999998887765544333222221 0 12233334444455555544 33555577777765
Q ss_pred -------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 243 -------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 243 -------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
++..|...|..+....+|..+++.+.|.+.+..|+
T Consensus 350 ~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 350 YEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23346678899999999999999999999998776
No 95
>KOG4686|consensus
Probab=99.68 E-value=2.5e-16 Score=127.25 Aligned_cols=255 Identities=17% Similarity=0.210 Sum_probs=171.8
Q ss_pred ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhhc
Q psy16658 29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLIL---FAKNVLMLFAARFIAGVAT 104 (318)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~~~s~~~l~~~r~l~G~~~ 104 (318)
+.|.+++.++..++.+.|.....+-+.+.|++.|| +|-|..-++-+....++.+..+ ..+++|.+.++|++.|+|.
T Consensus 71 k~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGg 150 (459)
T KOG4686|consen 71 KLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGG 150 (459)
T ss_pred hcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCc
Confidence 45588999999999999999999999999999996 5777654444444455555554 4689999999999999998
Q ss_pred cccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhHHH---------------
Q psy16658 105 GGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPMFI--------------- 140 (318)
Q Consensus 105 g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~~~--------------- 140 (318)
.....+..++...|+..||.+.+++ +.+-..+...+
T Consensus 151 ESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical 230 (459)
T KOG4686|consen 151 ESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL 230 (459)
T ss_pred hhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999998888 00000000000
Q ss_pred -----HHHhh-----cccc-----------------------------------------------------hHHHHHHH
Q psy16658 141 -----GEIAE-----SSIR-----------------------------------------------------GISAIIVG 157 (318)
Q Consensus 141 -----~~~~~-----~~~~-----------------------------------------------------g~~~~~~~ 157 (318)
++..+ +++. |.+.....
T Consensus 231 ~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy 310 (459)
T KOG4686|consen 231 SLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVY 310 (459)
T ss_pred HhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhh
Confidence 11000 1100 35555666
Q ss_pred HHHHHHHHHHHHHhhccCCeehhhhhhHH-HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceee
Q psy16658 158 IVQFIMTALSVVLVDKAGRRILLLLSDFV-MALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMM 236 (318)
Q Consensus 158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (318)
....+.+++.|.++||.|++-..+.+..+ ...+-..+.+. ..++ ...+.+.+..+..... ..|..
T Consensus 311 ~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----------~lsP---y~~m~~lGLsysllAc-slWP~ 376 (459)
T KOG4686|consen 311 GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----------FLSP---YTSMTFLGLSYSLLAC-SLWPC 376 (459)
T ss_pred hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----------hccH---HHHHHHHhhhHHHHHH-HHhhh
Confidence 66777888999999999999776655333 33333333332 1223 3444444444433211 12244
Q ss_pred eccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-h---hhHHHHHHHHHHHHHHHhhe
Q psy16658 237 VGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-S---AATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 237 ~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~~ 297 (318)
++.+.|+++.|++.|..+.+.++|-.+.|.+.|.+.|+.| + +..|.+....++....+.+.
T Consensus 377 va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~ 441 (459)
T KOG4686|consen 377 VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY 441 (459)
T ss_pred hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4677899999999999999999999999999999999766 2 22334444444444444443
No 96
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.68 E-value=4.5e-15 Score=135.05 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=93.7
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l 93 (318)
...++|.+..| +|-+ ....|+.+.+.++..++.++.|+++|.+|||+.++.+.++..+|++.++.++|...+
T Consensus 63 ~a~~l~~I~~d-------iG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~ 134 (599)
T PF06609_consen 63 PASILPYINAD-------IGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTF 134 (599)
T ss_pred cHHHHHHHHHh-------cCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHH
Confidence 34556777777 6654 677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
+.+..+.|+|.|... .....++|..|.|.|.....
T Consensus 135 iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~ 169 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLA 169 (599)
T ss_pred HHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhH
Confidence 999999999977665 45566899999999986666
No 97
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.67 E-value=4e-15 Score=135.43 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=170.0
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchh-HHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKP-VILAFCIPFIISWV 82 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~-~~~~~~~~~~~~~~ 82 (318)
++..+...+.++.+..+. +|++..++|.+..+..+..++..|++|+++| |+|||| .++++....+++..
T Consensus 19 ~~~~~~~~~~l~~yyt~v------~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDV------VGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred hHHHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 344445555566666654 8999999999999999999999999999999 669955 56667777777765
Q ss_pred HHHHHh------hHHHHHHHHHHHHhhccccccccchhhhhcc-CchhhhHHHH------h---hhH-h-HHhHH-----
Q psy16658 83 LILFAK------NVLMLFAARFIAGVATGGLSAIIPMFIGEIA-ESSIRAGVAT------G---GLS-A-IIPMF----- 139 (318)
Q Consensus 83 ~~~~~~------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~~~~r~~~~~------~---~~~-~-~~p~~----- 139 (318)
+.-..+ .+..+++..++.+++.........++..|.. +++||.+..+ . ... . ..|.+
T Consensus 93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 172 (473)
T PRK10429 93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG 172 (473)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 554322 2345566667778888888888899999999 6888987665 0 110 1 11110
Q ss_pred ---------H-------------------HHH---h-----h-c------------ccc---------------------
Q psy16658 140 ---------I-------------------GEI---A-----E-S------------SIR--------------------- 149 (318)
Q Consensus 140 ---------~-------------------~~~---~-----~-~------------~~~--------------------- 149 (318)
. +|. + + + +||
T Consensus 173 ~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~ 252 (473)
T PRK10429 173 GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIING 252 (473)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 221 0 0 0 011
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658 150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213 (318)
Q Consensus 150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (318)
+.......+..+++.++.+++.||+|+|+.+..+..+..++.+.+....... ....+.
T Consensus 253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 326 (473)
T PRK10429 253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAA------PHNALL 326 (473)
T ss_pred heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC------chhHHH
Confidence 2445555677888999999999999999998877766555544433221111 112233
Q ss_pred HHHHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
..+...+.+.+.+... ...+++++|..+ .+..|...|..+....++..+++.+.|.+.+..|+
T Consensus 327 ~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 327 IVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334444444444433 334467777754 33346688999999999999999999999987765
No 98
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.67 E-value=6.8e-15 Score=129.20 Aligned_cols=132 Identities=17% Similarity=0.217 Sum_probs=117.4
Q ss_pred ccccccccccccccCcCCCCCh-hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16658 17 VLPILTSTTETSVLNEPVDRGQ-ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFA 95 (318)
Q Consensus 17 ~lp~~~~~~~~~~~~~~~s~~~-~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 95 (318)
..|.+.+| +|+|++| .|.+.+.++.++.+..++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+
T Consensus 48 a~p~L~~e-------lglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i 120 (511)
T TIGR00806 48 ITPYLLTV-------LNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQL 120 (511)
T ss_pred HHHHHHHH-------cCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 9999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658 96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG 175 (318)
Q Consensus 96 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g 175 (318)
.|++.|++.|... +...++.+|+|+++|+++.+ .......++.+++.++.++ ...+|
T Consensus 121 ~R~llGvaEA~~~-A~~syI~~WfP~kER~rats---------------------i~~sg~~vG~~Ia~~L~ql-l~s~g 177 (511)
T TIGR00806 121 MEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAA---------------------YSRAAVLLGVFLSSVLGQL-LVTLG 177 (511)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 9999999999999 99999999999999999999 6666677777777777777 34455
Q ss_pred Cee
Q psy16658 176 RRI 178 (318)
Q Consensus 176 ~~~ 178 (318)
.|.
T Consensus 178 Wr~ 180 (511)
T TIGR00806 178 WIS 180 (511)
T ss_pred chh
Confidence 543
No 99
>KOG2533|consensus
Probab=99.66 E-value=1.6e-15 Score=136.10 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=96.6
Q ss_pred ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658 29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 108 (318)
++|.+....+.+.+.+++.++++++.++++.+.||++..+.+....+++++-.++.....|++.+++.|++.|+.++..+
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccc
Confidence 34488999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cccchhhhhccCchhhhHHHH
Q psy16658 109 AIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~r~~~~~ 129 (318)
|....+++.|+.++||+..++
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~ 173 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMG 173 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHH
Confidence 999999999999999999998
No 100
>PRK09848 glucuronide transporter; Provisional
Probab=99.66 E-value=4.9e-15 Score=134.10 Aligned_cols=251 Identities=13% Similarity=0.098 Sum_probs=158.9
Q ss_pred ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh----cchhHH-HHHHHHHHHHHHHHH
Q psy16658 11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF----GRKPVI-LAFCIPFIISWVLIL 85 (318)
Q Consensus 11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~ 85 (318)
.+...+.++.+..+. .|++..++|.+.+...+...+..++.|+++||. ||||.. .++.+...+...+..
T Consensus 24 ~~~~~~~l~~y~~~~------~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~ 97 (448)
T PRK09848 24 FAMGALFLLSYYTDV------AGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVF 97 (448)
T ss_pred HHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 333444454454443 799999999999999999999999999999996 777754 555554444444332
Q ss_pred HHh-------hHHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHH-----------hhhHhHHhHHH------
Q psy16658 86 FAK-------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVAT-----------GGLSAIIPMFI------ 140 (318)
Q Consensus 86 ~~~-------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~-----------~~~~~~~p~~~------ 140 (318)
..+ ....++....+.+++.+...+...++..|..++ ++|.+..+ .+.....|.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~ 177 (448)
T PRK09848 98 WVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEE 177 (448)
T ss_pred hCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 111 223344555677888888888777877776654 56776543 01111111110
Q ss_pred ---------------------------HHHhh---c------------ccc-----------------------------
Q psy16658 141 ---------------------------GEIAE---S------------SIR----------------------------- 149 (318)
Q Consensus 141 ---------------------------~~~~~---~------------~~~----------------------------- 149 (318)
+|..+ + +||
T Consensus 178 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (448)
T PRK09848 178 MVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRY 257 (448)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEee
Confidence 11100 0 011
Q ss_pred --------h-HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHH
Q psy16658 150 --------G-ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF 220 (318)
Q Consensus 150 --------g-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (318)
+ +......+..+++.++.+++.||+++|+.+..+..+..++.+.+.+. +....+.......+
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~---------~~~~~~~~~~~~~l 328 (448)
T PRK09848 258 VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV---------SVWSLPVALVALAI 328 (448)
T ss_pred ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---------CchhHHHHHHHHHH
Confidence 1 22222345567788899999999999999998887777766555431 01123333344444
Q ss_pred HHHHHHhcccccceeeeccccchh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 221 FIVMFSLGYGPIPWMMVGELFAPE-------VKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
.+.+.+.... ..++...|..|.+ .+|...|+.+....+|..+++.+.+.+.+..|+
T Consensus 329 ~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 329 ASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5555444443 3336666776543 358999999999999999999999999887665
No 101
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.65 E-value=9.8e-15 Score=122.40 Aligned_cols=265 Identities=14% Similarity=0.174 Sum_probs=191.6
Q ss_pred ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658 11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV 90 (318)
Q Consensus 11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~ 90 (318)
.....|+++.+.+| +|+|.+..|+++++..+...+.+++..+++.|+|.+|.+..++++..++.++-... +.
T Consensus 28 itsvgPLL~~Ir~~-------~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~ 99 (395)
T COG2807 28 ITSVGPLLDEIRQD-------LGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GL 99 (395)
T ss_pred hhhhhhhHHHHHHH-------hcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cH
Confidence 44567788888888 99999999999999999999999999999999999999999999999999998887 77
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------------------hhhHhHHhHHH-
Q psy16658 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------------------GGLSAIIPMFI- 140 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------------------~~~~~~~p~~~- 140 (318)
+.++.+-.+.|.+.+......++.+-+.+|+| -+..++ .+....+|.++
T Consensus 100 ~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allA 178 (395)
T COG2807 100 PLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLA 178 (395)
T ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999976 444444 11111122211
Q ss_pred -----HH-Hhh-----ccc----c-------------------------------------------hHHHHHHHHHHHH
Q psy16658 141 -----GE-IAE-----SSI----R-------------------------------------------GISAIIVGIVQFI 162 (318)
Q Consensus 141 -----~~-~~~-----~~~----~-------------------------------------------g~~~~~~~~~~~~ 162 (318)
++ .++ +.+ + |....+..+.+.+
T Consensus 179 l~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~ 258 (395)
T COG2807 179 LLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLP 258 (395)
T ss_pred HHHHhhhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHH
Confidence 11 111 000 0 6888899999999
Q ss_pred HHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccc-
Q psy16658 163 MTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGEL- 240 (318)
Q Consensus 163 ~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (318)
.++....+++|. ++|+.......++.++.+.+.+.. .+..+. .+.+.+.+.+..++-.. ..+.+.
T Consensus 259 ~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P---------~~~~~l---w~~llG~G~G~~F~laL-~li~~rs 325 (395)
T COG2807 259 TALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP---------GQLPIL---WALLLGLGQGGAFPLAL-TLILLRS 325 (395)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh---------hhHHHH---HHHHHhCccchHHHHHH-HHHHhhc
Confidence 999999999974 466666666666677776665431 111111 13444444443333322 333333
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhhe
Q psy16658 241 FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 241 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 297 (318)
-.+++.++-.|+.+.++++-...||++.|.+.|..| |......++...+...+..+.
T Consensus 326 ~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 326 SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence 346666888999999999999999999999999987 655555555555544444433
No 102
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.63 E-value=4.6e-14 Score=127.15 Aligned_cols=256 Identities=18% Similarity=0.205 Sum_probs=173.5
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhH-HHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHhhccccccccch
Q psy16658 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPV-ILAFCIPFIISWVLILFA-K-NVLMLFAARFIAGVATGGLSAIIPM 113 (318)
Q Consensus 37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~-~-s~~~l~~~r~l~G~~~g~~~~~~~~ 113 (318)
+..++..++..+...+..|+.|.++|+-|+||. +.+...+..+.+.+..+. + +++...+.-++.-++.+.......+
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999997774 555666666777777774 3 4555555566666777888888999
Q ss_pred hhhhccCchhh--------------------------hHHHH-----hhhH-----------------------------
Q psy16658 114 FIGEIAESSIR--------------------------AGVAT-----GGLS----------------------------- 133 (318)
Q Consensus 114 ~i~~~~~~~~r--------------------------~~~~~-----~~~~----------------------------- 133 (318)
++.|..+++++ ++..+ +.+.
T Consensus 150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~ 229 (477)
T PF11700_consen 150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF 229 (477)
T ss_pred HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence 99999999988 77766 0000
Q ss_pred ---------hHHhHHH--HHHhh-cc------------------------cc----------------------------
Q psy16658 134 ---------AIIPMFI--GEIAE-SS------------------------IR---------------------------- 149 (318)
Q Consensus 134 ---------~~~p~~~--~~~~~-~~------------------------~~---------------------------- 149 (318)
..+|.+. +|..+ +. .|
T Consensus 230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~ 309 (477)
T PF11700_consen 230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYAT 309 (477)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11100 00 00
Q ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhccCCe--ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHH
Q psy16658 150 ----------GISAIIVGIVQFIMTALSVVLVDKAGRR--ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLS 217 (318)
Q Consensus 150 ----------g~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (318)
.....+..+.+++|+++.+++.||+|.| +++..+.....+..+.- ......... .....+...+.
T Consensus 310 ~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g-~~G~~~~~~--g~~~~~~f~~~ 386 (477)
T PF11700_consen 310 EVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYG-LFGFWPSFF--GLKSPWEFWVL 386 (477)
T ss_pred HhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-HHHhhhccc--CcccHHHHHHH
Confidence 2666778899999999999999999988 67666554442222211 111111100 11234444555
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhh
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 296 (318)
..+.+...+. ..+..-++.+|+.|+++.+...|++...+.....+||.+.|.+.+..| .+..+....++.+++.++..
T Consensus 387 a~~~G~~~G~-~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 387 AVLIGLFMGG-IQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHhhh-HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHh
Confidence 5555555444 344555888999999999999999999999999999999999999987 77777777777666655553
No 103
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.63 E-value=1.4e-15 Score=132.47 Aligned_cols=278 Identities=18% Similarity=0.212 Sum_probs=178.2
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHH--HHHHHH-HHH
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPF--IISWVL-ILF 86 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~~~-~~~ 86 (318)
..+...|..|...++. .|+|.+++|.+.++..+...+.+|+.|.++||+|.||-++....+. ..+... ..+
T Consensus 22 ~~gi~~pF~~iWL~~~------~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~ 95 (412)
T PF01306_consen 22 IWGIFLPFFPIWLTQV------AGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVF 95 (412)
T ss_dssp HHHHHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTH
T ss_pred HHHHHHHHHHHHHccc------cCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666543 7999999999999999999999999999999999777554433222 122222 222
Q ss_pred Hh----hH-HHHHHHHHHHHhhccccccccchhhhhccCchh----hhHHHHhhhHhHH-----------hH--------
Q psy16658 87 AK----NV-LMLFAARFIAGVATGGLSAIIPMFIGEIAESSI----RAGVATGGLSAII-----------PM-------- 138 (318)
Q Consensus 87 ~~----s~-~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----r~~~~~~~~~~~~-----------p~-------- 138 (318)
.| |. ...+++-+..|+......|+..+++.++..+++ |.|.-|.++.++. |.
T Consensus 96 ~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~ 175 (412)
T PF01306_consen 96 GPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASA 175 (412)
T ss_dssp HHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHH
Confidence 22 22 122222233344444444555444444432221 2233331111100 00
Q ss_pred -------HH---H-HHh------h----cc-------------cc-----------------------------------
Q psy16658 139 -------FI---G-EIA------E----SS-------------IR----------------------------------- 149 (318)
Q Consensus 139 -------~~---~-~~~------~----~~-------------~~----------------------------------- 149 (318)
++ + +.. + ++ +|
T Consensus 176 ~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~ 255 (412)
T PF01306_consen 176 AAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAG 255 (412)
T ss_dssp HHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 00 1 000 0 00 00
Q ss_pred ------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHH
Q psy16658 150 ------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIV 223 (318)
Q Consensus 150 ------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (318)
|....+..+..++...+..++.+|+|.|+.+.++..++.+=..+.++. .+++.....-.+.+.
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~-----------~~~~~i~~~klLH~~ 324 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA-----------TNPWVISLIKLLHAL 324 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh-----------cchHHHHHHHHHHHH
Confidence 577888888899999999999999999999999988888887777763 445666666677777
Q ss_pred HHHhcccccceeeeccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 224 MFSLGYGPIPWMMVGELFAPEVKGSATGIA-VALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
-+.....+.. -++.+.+|++..++...+. +...+++..+.+.+.|.+.|+.|++.+|++.+.+.+...++..+.++++
T Consensus 325 e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 325 EFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 7666666566 8889999999999998886 5667899999999999999999999999999988888778777777655
Q ss_pred CCC
Q psy16658 303 KGK 305 (318)
Q Consensus 303 ~~~ 305 (318)
++.
T Consensus 404 ~~~ 406 (412)
T PF01306_consen 404 KKQ 406 (412)
T ss_dssp SST
T ss_pred Ccc
Confidence 543
No 104
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.63 E-value=8.5e-14 Score=119.29 Aligned_cols=255 Identities=15% Similarity=0.133 Sum_probs=177.2
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHHHHHHhh--H-HHHHHHHHHHHhhccccccc
Q psy16658 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKP-VILAFCIPFIISWVLILFAKN--V-LMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~s--~-~~l~~~r~l~G~~~g~~~~~ 110 (318)
+.+..+...++..+...+..|+.|.++|+.|+|| .+-....+..++.....++++ + +..++...+..++.......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 3455677888899999999999999999999766 556677777777777777765 4 44555678889999999999
Q ss_pred cchhhhhccCchhhhHHHH-----------------------------------------------------hhhHhHHh
Q psy16658 111 IPMFIGEIAESSIRAGVAT-----------------------------------------------------GGLSAIIP 137 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~-----------------------------------------------------~~~~~~~p 137 (318)
-.+++.+..++++-++..+ -.....+|
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP 215 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP 215 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence 9999999999988887766 11112223
Q ss_pred HHH--HHHh----------------------hcccc---------------------------------------hHHHH
Q psy16658 138 MFI--GEIA----------------------ESSIR---------------------------------------GISAI 154 (318)
Q Consensus 138 ~~~--~~~~----------------------~~~~~---------------------------------------g~~~~ 154 (318)
.+. +|.. |..++ .....
T Consensus 216 m~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~ 295 (438)
T COG2270 216 MILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGI 295 (438)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 322 1100 00000 25666
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658 155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234 (318)
Q Consensus 155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
..++..++++++.|++.||+|.|+++..+.++..+.++...+. ...........+.+...+. .....-
T Consensus 296 ~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~-----------~~~~~f~i~gll~g~s~G~-~qA~SR 363 (438)
T COG2270 296 ALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL-----------EGELDFWILGLLVGTSLGG-AQASSR 363 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc-----------cccHHHHHHHHHHHHhcch-HHHHHH
Confidence 6788899999999999999999999988877766666555442 1111222232333333333 334455
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
++..++.|+++-++..|+++..+......+|++.+.+.+..| .+..+.....+..++.+ .+...|..
T Consensus 364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~v~~~ 431 (438)
T COG2270 364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLRVKVP 431 (438)
T ss_pred HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEeecCC
Confidence 788899999999999999999999999999999999999876 44444444444444433 33444444
No 105
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.61 E-value=3.9e-14 Score=126.97 Aligned_cols=287 Identities=19% Similarity=0.243 Sum_probs=192.9
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhHHHHH-HHHHHHHHHHH
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPVILAF-CIPFIISWVLI 84 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~ 84 (318)
..+...+.++.+.++ +|.+..+.+++..+..+...+.+|+.|+++| |+||||.++.. .....++..+.
T Consensus 19 ~~~l~~~~l~~yl~~-------lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll 91 (477)
T TIGR01301 19 GWALQLSLLTPYVQE-------LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI 91 (477)
T ss_pred HHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 334445666667666 8999999999999999999999999999999 59999987774 66666777777
Q ss_pred HHHhhHH-----------------HHHHHHHHHHhhccccccccchhhhhccCchhhh--HHHH---------hhhHhHH
Q psy16658 85 LFAKNVL-----------------MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA--GVAT---------GGLSAII 136 (318)
Q Consensus 85 ~~~~s~~-----------------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~---------~~~~~~~ 136 (318)
++++++. .++++-.+..++.+...+...++++|.+|+++|. .+.+ .+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~ 171 (477)
T TIGR01301 92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA 171 (477)
T ss_pred HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776643 2333344555677888888899999999988763 3444 0000000
Q ss_pred ----------hHH-----------------H----------------HHHh----------h---c-cc---c-------
Q psy16658 137 ----------PMF-----------------I----------------GEIA----------E---S-SI---R------- 149 (318)
Q Consensus 137 ----------p~~-----------------~----------------~~~~----------~---~-~~---~------- 149 (318)
|.. + +|.. + + ++ +
T Consensus 172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 251 (477)
T TIGR01301 172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFG 251 (477)
T ss_pred HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHH
Confidence 100 0 2210 0 0 00 0
Q ss_pred -------------------------------------------------------h-HHHHHHHHHHHHHHHHHHHHhhc
Q psy16658 150 -------------------------------------------------------G-ISAIIVGIVQFIMTALSVVLVDK 173 (318)
Q Consensus 150 -------------------------------------------------------g-~~~~~~~~~~~~~~~~~g~l~d~ 173 (318)
| +....+++...+.+++..++.+|
T Consensus 252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~ 331 (477)
T TIGR01301 252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG 331 (477)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 44555666666777788889999
Q ss_pred cCC-eehhhhhhHHHHHHHHHHHHhhhhccCC----------CCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc
Q psy16658 174 AGR-RILLLLSDFVMALCLGVLGFYFYMMEDG----------KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA 242 (318)
Q Consensus 174 ~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (318)
+|+ |+....+.++.++++....+.....++. .+.....+..++.....++..+.. ..++++++++..|
T Consensus 332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~ 410 (477)
T TIGR01301 332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAIT-YSIPFALASIRSS 410 (477)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHH-HHHhHHHHHHHcc
Confidence 985 6666888777777777776543211100 000111245555666666666553 4467788888888
Q ss_pred h--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheeccCCCC
Q psy16658 243 P--EVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVPETKG 304 (318)
Q Consensus 243 ~--~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
+ +..|..+|+.|.+..+.+.+.....|.+.+..| ...++.+.++..+++.+..++.+|+.++
T Consensus 411 ~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 411 NLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred ccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4 455999999999999999999998888766665 3456666677777778888888887654
No 106
>PTZ00207 hypothetical protein; Provisional
Probab=99.61 E-value=2.5e-14 Score=130.94 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=92.4
Q ss_pred cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH------hh
Q psy16658 16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA------KN 89 (318)
Q Consensus 16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~s 89 (318)
...|.+.++ +|+|.++.+++.+.. ......+++.|++.||+|||+++.++.+++.+++++++++ ++
T Consensus 48 v~s~~L~~~-------lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s 119 (591)
T PTZ00207 48 LISGAMQAR-------YNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS 119 (591)
T ss_pred HHHHHHHHH-------hCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 344666666 999999999998774 4455678889999999999999999999999999999998 68
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
++.+.+.|++.|++.+...+.....+.+|+| ++||++.+
T Consensus 120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~G 158 (591)
T PTZ00207 120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVA 158 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHH
Confidence 9999999999999999998999999999997 67898888
No 107
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.60 E-value=1.3e-13 Score=124.16 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=85.5
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh-hHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK-NVL 91 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-s~~ 91 (318)
....+|.+..+. +|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+..+ +..
T Consensus 28 ~~~~L~~yL~~~------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~ 101 (493)
T PRK15462 28 MRALLILYLTNQ------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS 101 (493)
T ss_pred HHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 445666665542 899999999999999999999999999999999 999999999999999987776543 223
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCch--hhhHHHH
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESS--IRAGVAT 129 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~ 129 (318)
.+.+...+..++.|...+...++++|.+|++ +|..+.+
T Consensus 102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~ 141 (493)
T PRK15462 102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFS 141 (493)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceeh
Confidence 3444444555667777788889999999876 5655555
No 108
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.59 E-value=1e-14 Score=136.35 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=117.3
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
....++.++.+|.+.++ ++++..+.|++.+.+.+++.++.++.++++||+||||.+.++.++++++++++++.
T Consensus 46 ~~~~g~~~~~l~~iek~-------F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 46 LLYNGLVNSSLTTIERR-------FKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHHHHHhhchhhhhh-------hCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 34567788888999888 99999999999999999999999999999999999999999999999999998876
Q ss_pred h---------------------------------------------------hHHHHHHHHHHHHhhccccccccchhhh
Q psy16658 88 K---------------------------------------------------NVLMLFAARFIAGVATGGLSAIIPMFIG 116 (318)
Q Consensus 88 ~---------------------------------------------------s~~~l~~~r~l~G~~~g~~~~~~~~~i~ 116 (318)
+ .+..++++|+++|+|.+..++...+++.
T Consensus 119 hf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 119 HFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYID 198 (633)
T ss_pred HHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence 3 2566789999999999999999999999
Q ss_pred hccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q psy16658 117 EIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVD 172 (318)
Q Consensus 117 ~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 172 (318)
|++|+++|++..+ .......++..++.++++++.+
T Consensus 199 d~~~~~~~~~~~~---------------------i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 199 DFAKSKNSPLYIG---------------------ILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred ccCCccccHHHHH---------------------HHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999999988 4444455555555555555543
No 109
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.59 E-value=5.7e-14 Score=126.38 Aligned_cols=237 Identities=19% Similarity=0.220 Sum_probs=177.1
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhH-HHHHHHHHHHHHHHHHHH-h-------hHHHHHHHHH
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPV-ILAFCIPFIISWVLILFA-K-------NVLMLFAARF 98 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------s~~~l~~~r~ 98 (318)
.++++...|.+.....+..++..|+.|.++| |+||||. ++++....+++..+.... | ....+.+..+
T Consensus 32 ~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~ 111 (428)
T PF13347_consen 32 LGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYI 111 (428)
T ss_pred cCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHH
Confidence 8999999999999999999999999999999 8998875 556778888877777765 4 2344567777
Q ss_pred HHHhhccccccccchhhhhccC-chhhhHHHH---------h-hhHhHHhHHH---------------------------
Q psy16658 99 IAGVATGGLSAIIPMFIGEIAE-SSIRAGVAT---------G-GLSAIIPMFI--------------------------- 140 (318)
Q Consensus 99 l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~---------~-~~~~~~p~~~--------------------------- 140 (318)
+..++.........++..|..+ +++|.+..+ . +...+.|.+.
T Consensus 112 l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~ 191 (428)
T PF13347_consen 112 LFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF 191 (428)
T ss_pred HHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence 7799999999999999999998 467877666 1 1111111111
Q ss_pred -------HHH----hhcc--------------cc-------------------------------------hHHHHHHHH
Q psy16658 141 -------GEI----AESS--------------IR-------------------------------------GISAIIVGI 158 (318)
Q Consensus 141 -------~~~----~~~~--------------~~-------------------------------------g~~~~~~~~ 158 (318)
+|. ++++ || +.......+
T Consensus 192 ~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~ 271 (428)
T PF13347_consen 192 LITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFV 271 (428)
T ss_pred hhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 230 0000 11 366667788
Q ss_pred HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658 159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG 238 (318)
Q Consensus 159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (318)
..+++.++.++++||+|+|+.+..+..+.+++.+.+.+... .+.+...+...+.+.+.+... ..++++.+
T Consensus 272 ~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~a 341 (428)
T PF13347_consen 272 ASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP---------GSPWLVLILFILAGIGYGAFF-VIPWAMLA 341 (428)
T ss_pred HHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHhHhhhcccc-cccccccc
Confidence 88999999999999999999999999988888887766421 234555666666666665544 55668888
Q ss_pred cccch-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q psy16658 239 ELFAP-------EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA 278 (318)
Q Consensus 239 ~~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 278 (318)
|..+. +..|...|+.+....++..+++.+.+.+.+..|+.
T Consensus 342 d~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 342 DVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred cchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 88763 33588999999999999999999999998876643
No 110
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.5e-12 Score=114.83 Aligned_cols=254 Identities=19% Similarity=0.190 Sum_probs=181.2
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWV 82 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~ 82 (318)
+...+.....+..+..|. +|+++..+|.+..+.-+--++.-|+.|.+.|| +||+|. ++++.+..++.+.
T Consensus 25 ~~~~~~~~~yLl~fYTdv------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 25 NFAFGIVVLYLLFFYTDV------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred HHHHHHHHHHHHHHHhcc------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 344444555566666665 99999999999999999999999999999995 788664 6668788888888
Q ss_pred HHHHHhh------HHHHHHHHHHHHhhccccccccchhhhhccC-chhhhHHHH---------hhhHhHHh-HHH-----
Q psy16658 83 LILFAKN------VLMLFAARFIAGVATGGLSAIIPMFIGEIAE-SSIRAGVAT---------GGLSAIIP-MFI----- 140 (318)
Q Consensus 83 ~~~~~~s------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~---------~~~~~~~p-~~~----- 140 (318)
++-.+++ .....+...+.+++.......-.++.+|..+ ++||.+..+ .......+ .+.
T Consensus 99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~ 178 (467)
T COG2211 99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG 178 (467)
T ss_pred HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8887763 4566677888899999999899999999984 677877666 11111111 111
Q ss_pred -----------------------------HHHhh-----c---------------ccc----------------------
Q psy16658 141 -----------------------------GEIAE-----S---------------SIR---------------------- 149 (318)
Q Consensus 141 -----------------------------~~~~~-----~---------------~~~---------------------- 149 (318)
+|... + +||
T Consensus 179 ~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~ 258 (467)
T COG2211 179 GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSI 258 (467)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhh
Confidence 11000 0 111
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658 150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213 (318)
Q Consensus 150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (318)
...........+++.++..++.+|+|+|+.+.++.++..++.+++.+.. .++.+.
T Consensus 259 ~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---------~~~~~l 329 (467)
T COG2211 259 MVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---------AGSVVL 329 (467)
T ss_pred hheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc---------CcchHH
Confidence 2455555566666688999999999999999999888888888877752 122233
Q ss_pred HHHHHHHHHHHHHhcccccceeeeccccc-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFA-------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
.++..++.+.+.+ ..++++|++++|..+ .+.-|...|....+.-+|.+++..+.|++.+..|+
T Consensus 330 ~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 330 IVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3333344444444 456778888888763 23347888999999999999999999999987664
No 111
>PRK11462 putative transporter; Provisional
Probab=99.54 E-value=5e-13 Score=121.10 Aligned_cols=236 Identities=14% Similarity=0.119 Sum_probs=151.0
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh----hcchhH-HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHH
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK----FGRKPV-ILAFCIPFIISWVLILFAKN------VLMLFAARFIA 100 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~-~~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~ 100 (318)
.|+++..+|.+..+.-+..++.-|+.|+++|| +||||. ++++....+++..++-..++ ...+.+.-++.
T Consensus 40 ~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~ 119 (460)
T PRK11462 40 FGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLL 119 (460)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999995 798875 44566777777666554442 34556666777
Q ss_pred HhhccccccccchhhhhccC-chhhhHHHH------hh---hH-h-HHhHHH----------------------------
Q psy16658 101 GVATGGLSAIIPMFIGEIAE-SSIRAGVAT------GG---LS-A-IIPMFI---------------------------- 140 (318)
Q Consensus 101 G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~------~~---~~-~-~~p~~~---------------------------- 140 (318)
.++.......-.++..|..+ ++||.+..+ .+ .. . ..|.+-
T Consensus 120 ~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i 199 (460)
T PRK11462 120 TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF 199 (460)
T ss_pred HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999987 778887777 00 00 0 011100
Q ss_pred -----HHHhh-c--------------ccc-------------------------------------hHHHHHHHHHHHHH
Q psy16658 141 -----GEIAE-S--------------SIR-------------------------------------GISAIIVGIVQFIM 163 (318)
Q Consensus 141 -----~~~~~-~--------------~~~-------------------------------------g~~~~~~~~~~~~~ 163 (318)
+|..+ + +|| +.......+.++++
T Consensus 200 ~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig 279 (460)
T PRK11462 200 CFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIG 279 (460)
T ss_pred HHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHH
Confidence 11110 0 011 23445566777888
Q ss_pred HHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccc-
Q psy16658 164 TALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA- 242 (318)
Q Consensus 164 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 242 (318)
.++.++++||+++|+....+.....+...++.+. . ....+......++.+.+. ....+..+++..|..+
T Consensus 280 ~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~ 349 (460)
T PRK11462 280 SALAKPLTDWKCKVTIFWWTNALLAVISLAMFFV--P-------MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDY 349 (460)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--c-------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhh
Confidence 8999999999999987765444333322222111 0 011112222233333333 2234444456666554
Q ss_pred ------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q psy16658 243 ------PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGS 277 (318)
Q Consensus 243 ------~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 277 (318)
.+..|...+..+....+|..+++.+.|.+.+..|+
T Consensus 350 ~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 350 GEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred hHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22235556777788999999999999999887655
No 112
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.53 E-value=1.5e-13 Score=124.60 Aligned_cols=241 Identities=13% Similarity=0.097 Sum_probs=167.4
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHHHHHHHH-HHHHHHHHHhhHH-HHHHHHHHHHhhc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILAFCIPFI-ISWVLILFAKNVL-MLFAARFIAGVAT 104 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~s~~-~l~~~r~l~G~~~ 104 (318)
+|++.++++...+...+...+-.+ +|.++||++ ||+.++++.++.. +.....+..++.. ...+.+++.+++.
T Consensus 56 lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 134 (468)
T TIGR00788 56 LGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAK 134 (468)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 899999999999999999999555 999999998 6777777776653 3333333334543 4444789999999
Q ss_pred cccccccchhhhhccCchhhhHH------------HH--------------------hhhHhH---Hh----HHHHHHh-
Q psy16658 105 GGLSAIIPMFIGEIAESSIRAGV------------AT--------------------GGLSAI---IP----MFIGEIA- 144 (318)
Q Consensus 105 g~~~~~~~~~i~~~~~~~~r~~~------------~~--------------------~~~~~~---~p----~~~~~~~- 144 (318)
+...++..++..|..+ |+++.. .| ....+. ++ ...+|.+
T Consensus 135 a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~ 213 (468)
T TIGR00788 135 ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRA 213 (468)
T ss_pred HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999998 444221 12 001011 11 1112211
Q ss_pred ---hc--c------------------c-----------c--------------------------------------hHH
Q psy16658 145 ---ES--S------------------I-----------R--------------------------------------GIS 152 (318)
Q Consensus 145 ---~~--~------------------~-----------~--------------------------------------g~~ 152 (318)
++ + + + |..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~ 293 (468)
T TIGR00788 214 FVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMS 293 (468)
T ss_pred cccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhH
Confidence 00 0 0 0 577
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
....+++.+++....+++.+|++.|+.+..+.++.+++...........+... .....+.......+.....+....+.
T Consensus 294 ~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~-gi~~~~~~~~~~~l~~~~~g~~~~~~ 372 (468)
T TIGR00788 294 KVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAF-GISDEVFVLGDSIIAEVLAQLKFMPF 372 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccccc-CCCCeeeeeehhHHHHHHHHHHHccH
Confidence 77788999999999999999999999988887777666544332211111000 00112233445556666667777777
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG 276 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 276 (318)
. .++.+..|++.+++..++.+++.++|..+++.+.+.+.++.|
T Consensus 373 ~-~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 373 L-VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred H-HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6 888899999999999999999999999999999999999887
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.47 E-value=1.5e-12 Score=115.23 Aligned_cols=142 Identities=13% Similarity=0.103 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
.|+......++..++.++.|++.||+|||+.+..+.....++..+.... .+.+...+...+.+.+.+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~ 99 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-----------GAYVSLYILRVLLGAAEAPF 99 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------cCHHHHHHHHHHHHHHHHhh
Confidence 3688899999999999999999999999999998888877777766653 23445555556666665554
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
..... .++.|.+|+++|++++++.+....+|..++|.+.+.+.++.+|+..+.+.+....+..+..+...+++
T Consensus 100 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 100 FPGII-LIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred hhHHH-HHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence 44444 78889999999999999999999999999999999999999999999888777776666555555544
No 114
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.46 E-value=6.4e-13 Score=116.60 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......+...++.++.|+++||+|||+.+..+..+..++..+........ ..+.+...+...+.+.+.+...
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~~~~~ 110 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------GLNIWQVYVLAGILAIAQAFFT 110 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH
Confidence 5788888899999999999999999999999988777776666655432111 1134445555555555555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
++.. +++.|..|+++|+++.|+.+....+|..++|.+.+.+.++.||+..+++.+...++..+...
T Consensus 111 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 176 (365)
T TIGR00900 111 PAYQ-AMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV 176 (365)
T ss_pred HHHH-HHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444 88899999999999999999999999999999999999999999988877666655544443
No 115
>PRK10054 putative transporter; Provisional
Probab=99.45 E-value=1.4e-12 Score=116.16 Aligned_cols=178 Identities=13% Similarity=0.172 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658 89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV 168 (318)
Q Consensus 89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 168 (318)
+.+.+++.+++..++.+...|....++.|...-+. .+-|+......+...+.+++.|
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~-----------------------~~~g~~~s~~~~~~~~~~~~~G 64 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSV-----------------------DLIGYAMTIALTIGVVFSLGFG 64 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655555543221110 1114677778888899999999
Q ss_pred HHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhh
Q psy16658 169 VLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGS 248 (318)
Q Consensus 169 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 248 (318)
+++||+|||+.+..+.....++.+.+.+. ++.+..+....+.+..... ..+....+..|..|+++|++
T Consensus 65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 132 (395)
T PRK10054 65 ILADKFDKKRYMLLAITAFASGFIAIPLV-----------NNVTLVVLFFALINCAYSV-FSTVLKAWFADNLSSTSKTK 132 (395)
T ss_pred HHHhhcCcchhHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHhHHHH
Confidence 99999999999988887777766655542 1222333333333333332 33334477789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 249 ATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 249 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+...++..++..+..+|+
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875 6899888887776666554444434443
No 116
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.44 E-value=2.2e-12 Score=114.23 Aligned_cols=142 Identities=20% Similarity=0.134 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+.....++....... .+.+.......+.+.+.+...
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~ 111 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-----------NNIETLLVLRFVQAFGASAGS 111 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHcchhHHH
Confidence 578888899999999999999999999999998887777777666542 223333444444554444444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.... .++.|.+|+++|+++.+..+....++..++|.+.+.+.++.+|+..+.+.+....+..+..+...||++
T Consensus 112 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (385)
T TIGR00710 112 VISQ-ALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL 184 (385)
T ss_pred HHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4444 778899999999999999999999999999999999999999999988887777766666555555543
No 117
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.42 E-value=3.7e-12 Score=112.91 Aligned_cols=142 Identities=10% Similarity=0.096 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..+++++.|++.||+|||+.+..+..+.+++.++.... .+.+...+...+.+.+.+...
T Consensus 41 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~-----------~~~~~l~~~r~l~G~~~~~~~ 109 (382)
T PRK10091 41 GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS-----------SSYLMLAIGRLVSGFPHGAFF 109 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhHHHH
Confidence 477888899999999999999999999999999988888877766652 334445555555555544433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.... ....|..|+++|+++++.......++..++|.+.+.+.+..+|++.|.+.+....+..+......||.+
T Consensus 110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 110 GVGA-IVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHH-HHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3333 667788999999999999999999999999999999999999999999888777666555555566643
No 118
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.42 E-value=6.7e-13 Score=99.85 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=107.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCch
Q psy16658 43 GSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESS 122 (318)
Q Consensus 43 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 122 (318)
.+.+.++..++.++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+...+++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 34567788899999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658 123 IRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183 (318)
Q Consensus 123 ~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 183 (318)
+|++..+ .......++..++..+.+.+.|+.+.+......
T Consensus 84 ~~~~~~~---------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 84 ERGVALG---------------------LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred hhhHHHH---------------------HHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 9999988 778888889999999999999988876655544
No 119
>PRK03545 putative arabinose transporter; Provisional
Probab=99.41 E-value=4.2e-12 Score=112.88 Aligned_cols=141 Identities=16% Similarity=0.073 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......+...++.+..|++.||+|||+.+..+.....++.+..... ++.+...+.-.+.+.+.+...
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~~~G~~~~~~~ 115 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----------WNFTVLLISRIGIAFAHAIFW 115 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence 477777888888899999999999999999999988888877766652 234444444444444444333
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+...+++.|..|+++|++++|+......++..++|.+.+.+.++.||++.|++.+.++++..+......|+.
T Consensus 116 -~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 116 -SITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred -HHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333367789999999999999999999999999999999999999999999998887777665555545543
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.41 E-value=3.5e-12 Score=115.03 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......++..+++++.|++.||+|||+.+..+.+...++.++.... .+.+.......+.+.+.+...
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~g~~~ 129 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-----------SSLWAFALLWVLNAFFQGWGW 129 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHccc
Confidence 688888999999999999999999999999999988888877766552 223333333444455555444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.+.. .++.|.+|+++|++++|+.+....+|..++|.+.+.+.++.||++.|.+.+....+..++..+.++|
T Consensus 130 ~~~~-~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 130 PVCA-KLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred hHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444 7888999999999999999999999999999999999999999999988777665544444433443
No 121
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.40 E-value=4.7e-12 Score=116.05 Aligned_cols=157 Identities=17% Similarity=0.055 Sum_probs=116.7
Q ss_pred hHHhHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658 134 AIIPMFIGEIAESS-IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF 212 (318)
Q Consensus 134 ~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (318)
...|.+.+|+..+. .-++....+.++.....+..|+++||+|||+.+..+..+..++.++.... .+.+
T Consensus 27 ~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a-----------~~~~ 95 (495)
T PRK14995 27 VAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS-----------PTAS 95 (495)
T ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc-----------CCHH
Confidence 33444444443322 22577788888888999999999999999999999998888888777662 3344
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q psy16658 213 LPLLSVIFFIVMFSLGYGPIPWMMVGEL-FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVG 291 (318)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 291 (318)
..++.-.+.+.+.+...+... ..+.+. .|+++|+++.|+......+|..++|.+.+.+.++.||++.|++...++.+.
T Consensus 96 ~li~~r~l~G~g~~~~~~~~~-~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~ 174 (495)
T PRK14995 96 WLIATRALLAIGAAMIVPATL-AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVV 174 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence 555555566665554333333 334344 478899999999999999999999999999999999999999988777776
Q ss_pred HHHhheeccCC
Q psy16658 292 TLFTFVLVPET 302 (318)
Q Consensus 292 ~~~~~~~~~~~ 302 (318)
.++..+..|++
T Consensus 175 ~~l~~~~l~~~ 185 (495)
T PRK14995 175 MGLTARYVPRQ 185 (495)
T ss_pred HHHHHHhCCCC
Confidence 66666656654
No 122
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.38 E-value=9.4e-12 Score=110.75 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+...+++++.|++.||+|||+.+..+..+.+++.+..... .+.+..+..-.+.+.+.+...
T Consensus 58 g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~ 126 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA-----------NSFSLLLIGRACLGLALGGFW 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH-----------ChHHHHHHHHHHHHHhhHHHH
Confidence 467778888899999999999999999999999988888877666552 224444555556666655543
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.. ...++.|.+|+++|+++.+......+++..++|.+.+.+.+..||+..|++.+.++.+..+......||+
T Consensus 127 ~~-~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 127 AM-SASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HH-HHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 33 3377889999999999999999999999999999999999999999999888776665544444334543
No 123
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.38 E-value=9.9e-12 Score=111.28 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++++..|++.||+|||+.+..+.++..++..+..+. .+.+.....-.+.+.+.+...
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~~ 114 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA-----------TGPESLYLLRILVGIAEAGFL 114 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHhhHH
Confidence 578888889999999999999999999999998888888877777652 223444555555565555443
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK------NLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+ ..||++.|.+.+...++..++.+++.||++
T Consensus 115 -~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 115 -PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred -HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 3333677899999999999999999999999999999998875 358999999887777766666666666654
No 124
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.38 E-value=2.3e-12 Score=112.61 Aligned_cols=139 Identities=21% Similarity=0.300 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......+...++.++.|+++||+|||+.+..+..+.+++..+..+. .+.+.......+.+.+.+...
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~ 103 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----------SNFWLLLIARFLLGIGSGFFS 103 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----------hhHHHHhhhcccccccccccc
Confidence 578888899999999999999999999999999988888884444431 123445555556666655544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
.... .++.|.+|+++|++++++.+....+|..++|.+.+.+.++.+|+..+++.+...++..++...+.+
T Consensus 104 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 173 (352)
T PF07690_consen 104 PASN-ALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLP 173 (352)
T ss_dssp HHHH-HHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC-
T ss_pred cccc-ccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhh
Confidence 4444 888999999999999999999999999999999999998889999999998888887765444443
No 125
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.37 E-value=7.8e-12 Score=110.58 Aligned_cols=141 Identities=14% Similarity=0.169 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......++..++.++.|++.||+|||+.+..+.....++....... .+.+.......+.+.+.+...
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~ 97 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----------QTIDQLIYMRFLHGLAAAAAS 97 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999888888777776552 223334444445554444433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.+.. .++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+++.+....+..+......+|+
T Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 98 VVIN-ALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3333 77889999999999999999999999999999999999999999999888877777666555555554
No 126
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.37 E-value=7.7e-12 Score=111.27 Aligned_cols=142 Identities=9% Similarity=0.122 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+.....++....... .+.+.......+.+.+.+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~ 109 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA-----------ETSSLFLAGRFLQGIGAGCCY 109 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhhhHHH
Confidence 577778888899999999999999999999998887777777665542 122333333344444433333
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
. ....++.|.+|+++|+++.+..+....++..++|.+.+.+.+..+|+..+++.+....+..++.....+|++
T Consensus 110 ~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 110 V-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3 333777899999999999999999999999999999998888889999898888777776666555555543
No 127
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.37 E-value=3.4e-12 Score=95.98 Aligned_cols=136 Identities=20% Similarity=0.284 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccc
Q psy16658 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIP 233 (318)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (318)
....++..++.+..+++.||++||+.+..+.....++....... .+.+.......+.+...+.... ..
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~-~~ 72 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----------SNITVLIIARFLQGFGAAFALV-AG 72 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHH-hH
Confidence 34567788899999999999999999988877777666655442 2233344445555555444333 34
Q ss_pred eeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 234 WMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 234 ~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
..+..|..|+++|+++.+..+....++..++|.+.+.+.+..+|+..+.+.+....+..+..+...||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 37788999999999999999999999999999999999998889888888877777766666554443
No 128
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.2e-11 Score=106.90 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|...+.+.++..++.++...+.||+.||+.+.....++.++.++..+. .+.+..++.=.+.+...+..+
T Consensus 51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA-----------p~f~~Ll~aR~~~g~a~G~f~ 119 (394)
T COG2814 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA-----------PSFAVLLLARALAGLAHGVFW 119 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999888873 444555555555555555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
. +..+...++.||++|+++.++......++..+|.++..++-|.+|||..|+..+.++++..+..+..+|
T Consensus 120 ~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 120 S-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred H-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 444888899999999999999999999999999999999999999999999999999999888888888
No 129
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.36 E-value=2.1e-11 Score=107.23 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=109.7
Q ss_pred hHHhHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch
Q psy16658 134 AIIPMFIGEIAES-SIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF 212 (318)
Q Consensus 134 ~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (318)
...|.+.+|..-+ +.-|+....+.++..++++..|++.||+|||+.+.........+...... ..+.+
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----------~~~~~ 80 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLD-----------PFNYE 80 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-----------hccHH
Confidence 3445555554332 23378888889999999999999999999888765443333332211111 01233
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy16658 213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGT 292 (318)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 292 (318)
..+..-.+.+.+.+. ..+.. ....|.+|+++|++++++.+....+|..+++.+.+.+.++.||+..|.+.+.+..+..
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~-~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAF-APAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 445555555555443 22223 4457899999999999999999999999999999999999999999998888877777
Q ss_pred HHhheeccCCC
Q psy16658 293 LFTFVLVPETK 303 (318)
Q Consensus 293 ~~~~~~~~~~~ 303 (318)
++.++..||++
T Consensus 159 ~~~~~~lp~~p 169 (368)
T TIGR00903 159 ILVLAALPALP 169 (368)
T ss_pred HHHHHHcCCCC
Confidence 76666677643
No 130
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.35 E-value=4.8e-12 Score=111.59 Aligned_cols=141 Identities=13% Similarity=0.148 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+..+..++.++.... .+.+..++...+.+.+.+...
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~ 101 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-----------TSLWVMAALWALNGIFQGMGW 101 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHhhccccC
Confidence 688889999999999999999999999999999988888877776653 223444555555555544444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT-LCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+ ...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..+.+.+.+..+..++.+...+++
T Consensus 102 ~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 102 P-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred C-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 4 4447888999999999999999999999999999 4666677778899888888777766666666555543
No 131
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.35 E-value=4.6e-12 Score=115.84 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+..+..++..+.... .+.+.......+.+.+.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~G~~~~~~~ 108 (485)
T TIGR00711 40 QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA-----------PNLELMIIFRVIQGFGGGPLI 108 (485)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc-----------CCHHHHHHHHHHHHhhhhhHH
Confidence 588888999999999999999999999999999888888777766542 233444555555555544433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.+|++.|++.+....+..++..+..|++
T Consensus 109 -~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 109 -PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred -HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 334478889999999999999999999999999999999999999999999887777666655555555543
No 132
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.35 E-value=1.7e-11 Score=109.77 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
....++.++..+++++.|+++||+|||+.+..+..+..++.+..... .+.+..++.-.+.+.+.+. ..
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----------~~~~~l~~~r~l~Gi~~~~-~~ 122 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT-----------TSMTQFLIARFIQGTSICF-IA 122 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHH-HH
Confidence 66777788889999999999999999999998888777777666552 2333444444555554433 23
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
+..+....|.+|+++|++.+++.+....++..++|.+.+.+.++.||++.|++.+...++..+..++..||++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 123 TVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3334677889999999999999999999999999999999999889999999888877776655555566653
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.35 E-value=3.4e-11 Score=107.63 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|....+..+...++.++.|+++||+|||+.+..+.....++..+.... .+.+...+...+.+...+ .
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~--~ 123 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA-----------QNIWQFLILRALLGLLGG--F 123 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHhhh--h
Confidence 367778888899999999999999999999998877777766655442 223334444444444322 2
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.+.......|..|+++|+++.+..+....+|..++|.+.+.+.+..+|+..+++.+....+..+......+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 124 VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 2333356678899999999999999999999999999999999999999999888877766655555545543
No 134
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.34 E-value=1.9e-11 Score=109.21 Aligned_cols=141 Identities=14% Similarity=0.065 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+..+..++.+..... .+.+...+...+.+.+.+...
T Consensus 53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~~~~~ 121 (406)
T PRK11551 53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA-----------WDFPSLLVARLLTGVGLGGAL 121 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhHHHHH
Confidence 688888999999999999999999999999999887777766555442 223444555555555555444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.... .++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+|+..+++.+....+..++.....||+
T Consensus 122 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 122 PNLI-ALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred HHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3333 77889999999999999999999999999999988888888999888887766555554444445554
No 135
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.33 E-value=9.7e-12 Score=108.35 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=134.6
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchh-HHHHHHHHHHHHHHHHHHHh
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKP-VILAFCIPFIISWVLILFAK 88 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~ 88 (318)
.........|.+.++. ++.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....+
T Consensus 190 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 263 (352)
T cd06174 190 GYYGLLTYLPLYLQEV------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP 263 (352)
T ss_pred HHHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3344455566666663 5889999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658 89 NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV 168 (318)
Q Consensus 89 s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 168 (318)
+.+.+.+..++.|++.+...+...+++.|..|+|+|++.++ .......++..++..+.+
T Consensus 264 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~i~~~i~g 322 (352)
T cd06174 264 SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASG---------------------LFNTFGSLGGALGPLLAG 322 (352)
T ss_pred cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 888889999999999999
Q ss_pred HHhhccCCeehhhhhhHHHHHH
Q psy16658 169 VLVDKAGRRILLLLSDFVMALC 190 (318)
Q Consensus 169 ~l~d~~g~~~~~~~~~~~~~~~ 190 (318)
.+.|+.+.+........+..++
T Consensus 323 ~l~~~~~~~~~~~~~~~~~~i~ 344 (352)
T cd06174 323 LLLDTGGYGGVFLILAALALLA 344 (352)
T ss_pred HHhcccCcchHHHHHHHHHHHH
Confidence 9999888887766554444443
No 136
>KOG1330|consensus
Probab=99.32 E-value=5.2e-13 Score=115.52 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|++.....+...+++++.|+++||++||+++..|..+..++.+..++. ...|...+.-.+.+.+-+...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs-----------~~Fwq~~l~R~~vGiGeAs~~ 139 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS-----------NHFWQVLLCRGFVGIGEASYS 139 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhccchhhhc
Confidence 799999999999999999999999999999999999999988888874 335666666677777776654
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCCCCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPETKGKT 306 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
+..+ .+++|.+|.++|+++.++.+....+|..+|-.....+.+..+ |++.|...+++.++..++..++.+|.+++.
T Consensus 140 ~ia~-s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga 216 (493)
T KOG1330|consen 140 PIAP-SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGA 216 (493)
T ss_pred ccch-hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccc
Confidence 4444 999999999999999999999999999999888888888777 999999999999998888888777765443
No 137
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.31 E-value=5.4e-11 Score=106.00 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+....+++.+...+. .+.+.......+.+.+.+...
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~ 118 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA-----------PGYITMFIARLVIGIGMGGEY 118 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhhhhhh
Confidence 578888899999999999999999999999998888777777666542 223444555555555555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.... +++.|..|+++|+++.++.+....+|..+++.+.+.+.+..+ |+..+.+.+...++. ++.....||+
T Consensus 119 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~ 191 (405)
T TIGR00891 119 GSSA-AYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEA 191 (405)
T ss_pred HHHH-HHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCC
Confidence 4444 778899999999999999999999999999999999988776 888877654444433 3333334543
No 138
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.31 E-value=7.9e-11 Score=105.06 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+...+.+++.|+++||+|||+.+..+.....++.+..... ++.+.......+.+.+.+...
T Consensus 49 gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~ 117 (400)
T PRK11646 49 GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA-----------HEPWLLWLSCILSGLGGTLFD 117 (400)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH
Confidence 577777788888889999999999999999999988888877776552 223444444455555444333
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
++.. +.+.|..|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+....+..++.....|+
T Consensus 118 ~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 118 PPRT-ALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3333 77789999999999999999999999999999999998 6799998888777766655444444454
No 139
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.2e-12 Score=108.33 Aligned_cols=141 Identities=18% Similarity=0.236 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.+.+.+.+..-++.++.|.++||.+.|+.+..+++++++..+++++. .+.+...+...+-+.+.+.++
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----------~s~~~~~~l~~lng~fQg~Gw 135 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----------PSLFLFAVLWVLNGWFQGMGW 135 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhcCCC
Confidence 688889999999999999999999999999999999999999999984 345666777778888899999
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF--VFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~--g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+|.. ..+...+|+++||+..++-|+..++|+.+.|.+. +.+.++.+|+..|++-++++++..++.++..+++
T Consensus 136 pp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 136 PPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred cHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9988 7778999999999999999999999999999999 9999999999999999999988888887766554
No 140
>KOG2563|consensus
Probab=99.30 E-value=1.3e-10 Score=100.51 Aligned_cols=261 Identities=16% Similarity=0.146 Sum_probs=177.3
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh------hHH--HHHHHHHHHHhh
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK------NVL--MLFAARFIAGVA 103 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~------s~~--~l~~~r~l~G~~ 103 (318)
++ +.+..-|+..+|.+.+....+++-|+.||+|-|...+++..+..+++.+-..+. .++ ....+..+.+.+
T Consensus 75 Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~A 153 (480)
T KOG2563|consen 75 YG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAA 153 (480)
T ss_pred hc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHh
Confidence 56 777788999999999999999999999999999999999999999999888762 345 667888899988
Q ss_pred ccccccccchhhhhccCchhhhHHHH----------------------------------------hhhHhHHhHHHHHH
Q psy16658 104 TGGLSAIIPMFIGEIAESSIRAGVAT----------------------------------------GGLSAIIPMFIGEI 143 (318)
Q Consensus 104 ~g~~~~~~~~~i~~~~~~~~r~~~~~----------------------------------------~~~~~~~p~~~~~~ 143 (318)
+-........+..-|++++||..+.. ....+.+|+.+...
T Consensus 154 q~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~ 233 (480)
T KOG2563|consen 154 QPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLF 233 (480)
T ss_pred hhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777888999999999987776 01111222211000
Q ss_pred ----------------hhc-----------ccc-------------------------------------hHHHHHHHHH
Q psy16658 144 ----------------AES-----------SIR-------------------------------------GISAIIVGIV 159 (318)
Q Consensus 144 ----------------~~~-----------~~~-------------------------------------g~~~~~~~~~ 159 (318)
..+ +|+ |....+..+.
T Consensus 234 ~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~ 313 (480)
T KOG2563|consen 234 VFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVA 313 (480)
T ss_pred hcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHH
Confidence 000 000 6788888899
Q ss_pred HHHHHHHHHHHhhccCCe-ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeec
Q psy16658 160 QFIMTALSVVLVDKAGRR-ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVG 238 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (318)
+++++.+.|.+.||.++- .+.........++...+...... ....++ +...+.....+..+..|+-..+-.
T Consensus 314 Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-------~~~~vi-v~~t~~~~g~~~~~~~Pig~Elgv 385 (480)
T KOG2563|consen 314 GMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-------LGDSVI-VFTTCGLLGFFGTGYLPIGFELGV 385 (480)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-------CCceEe-hhhhHHHHHHhhcCCCCcceeeee
Confidence 999999999999998754 44444433333332222211111 111222 233333334445566777778888
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG----SAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
|..-|..-++..|+.+..+++-+.+-..+.+...+..+ +...-+.....+.+...+..+..++
T Consensus 386 E~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~ 452 (480)
T KOG2563|consen 386 ETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD 452 (480)
T ss_pred eeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence 88656666889999999999999899999998888766 4333334444444444444444433
No 141
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.30 E-value=7.2e-11 Score=105.07 Aligned_cols=174 Identities=14% Similarity=0.162 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS 167 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (318)
++++.+.+++++..++..........++.|...... .-++....+.+...+..++.
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------------------------~~~~~~~~~~l~~~l~~~~~ 58 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDW------------------------SQPLLQMFFVLAYIVLAPFV 58 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH------------------------HHHHHHHHHHHHHHHHHhhh
Confidence 355666667777776655444444333333322111 11367778888999999999
Q ss_pred HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658 168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247 (318)
Q Consensus 168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 247 (318)
|+++||+|||+++..+..+..++.+.+... ... .....+.+.+.+. ..|...+++.|.+|+++|+
T Consensus 59 G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----------~~~---~~~r~l~G~~~a~-~~pa~~a~i~~~~~~~~~~ 123 (393)
T PRK11195 59 GAFADSFPKGRVMFIANGIKLLGCLLMLFG-----------IHP---LLAYGLVGIGAAA-YSPAKYGILTELLPGEKLV 123 (393)
T ss_pred hHhhhccCCchhhHHHHHHHHHHHHHHHHH-----------HHH---HHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHH
Confidence 999999999999999988877766554332 011 2333344444444 3444448889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 248 SATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 248 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+++|+.+.....+..+||.+.|.+.+.. ++..+.+.+....+. .+.....||.
T Consensus 124 ~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~ 176 (393)
T PRK11195 124 KANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRL 176 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 9999999999999999999999999864 555555544443333 2333445543
No 142
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.29 E-value=2.9e-10 Score=99.98 Aligned_cols=264 Identities=14% Similarity=0.080 Sum_probs=178.2
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhhccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK--NVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--s~~~l~~~r~l~G~~~g~~~ 108 (318)
+|.++++..-+.+.|..-.=...+++|+++||+ |+||++.++.++..+|.+..+... +...+.++-.+.++|.|..=
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K 135 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFK 135 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccc
Confidence 679999998888888888888999999999996 999999999999999999999984 78899999999999999999
Q ss_pred cccchhhhhccCchhhhHHHH-----------------------------------------------------------
Q psy16658 109 AIIPMFIGEIAESSIRAGVAT----------------------------------------------------------- 129 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~r~~~~~----------------------------------------------------------- 129 (318)
+...++++|.+|+++..+--+
T Consensus 136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~ 215 (498)
T COG3104 136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGV 215 (498)
T ss_pred ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCC
Confidence 999999999998776433333
Q ss_pred ------------------hhhHhHHh---HHH--------------------------HHHhhcccc-------------
Q psy16658 130 ------------------GGLSAIIP---MFI--------------------------GEIAESSIR------------- 149 (318)
Q Consensus 130 ------------------~~~~~~~p---~~~--------------------------~~~~~~~~~------------- 149 (318)
.......+ ... ++..++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~i 295 (498)
T COG3104 216 PDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVI 295 (498)
T ss_pred CCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 000011111
Q ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCe-------ehhhhhhHHHHHHH
Q psy16658 150 -------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRR-------ILLLLSDFVMALCL 191 (318)
Q Consensus 150 -------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~ 191 (318)
.+...++.+.-++..++..++-.|.+++ .-+..+...++.++
T Consensus 296 FW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~f 375 (498)
T COG3104 296 FWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGF 375 (498)
T ss_pred HHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHH
Confidence 3777888888888888888887774433 12345555666666
Q ss_pred HHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-
Q psy16658 192 GVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF- 270 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~- 270 (318)
+++.......... +...+.++.+....+..++- ...+|+-.+++..+.|++..+..++........++.++..+.+.
T Consensus 376 l~l~~~~~~~~~~-~~~~s~~~lil~y~l~s~gE-L~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~ 453 (498)
T COG3104 376 LILLLAGIWFGGP-SGLVSVWWLVLSYVLQSFGE-LFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLT 453 (498)
T ss_pred HHHHHHHHhhcCC-CCCcCHHHHHHHHHHHHHHH-HHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccc
Confidence 6665542222221 12233444454555554444 44566665888899999988888888877777777777766662
Q ss_pred -----HHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 271 -----LVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 271 -----l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
..+.......|+..+....+.......
T Consensus 454 ~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 454 AVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 333444555666666666655554444
No 143
>TIGR00895 2A0115 benzoate transport.
Probab=99.29 E-value=1.5e-11 Score=109.22 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......++..++.++.|++.||+|||+.+..+..+..++..+.... .+.+.......+.+.+.+...
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~ 123 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-----------TNVTQLLILRFLAGLGLGGLM 123 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc-----------cchHHHHHHHHHHhcccccch
Confidence 467778888899999999999999999999998887777776665542 223334444445554444444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.... +++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+....+..++.....|++
T Consensus 124 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 124 PNLN-ALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred hhHH-HHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 4344 88889999999999999999999999999999999999999999888887666655555555555554
No 144
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.29 E-value=9.1e-11 Score=105.31 Aligned_cols=144 Identities=20% Similarity=0.160 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+...+++++.|+++||++||+.+..+....+++...+....... ....+.......+.+.+.+...
T Consensus 55 g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~~~~ 128 (417)
T PRK10489 55 GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP------EPSLLAIYLLGLWDGFFGSLGV 128 (417)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999999999888777666655544321110 1122333444444444444443
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.+.. ..+.|..|+++|+++.++.+....+|..++|.+.+.+.+..+|++.+.+.+...++..+... ..|+
T Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 198 (417)
T PRK10489 129 TALL-AATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPA 198 (417)
T ss_pred HHHh-hhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCC
Confidence 4444 67789999999999999999999999999999999999998998888777666555544433 3444
No 145
>PRK10504 putative transporter; Provisional
Probab=99.28 E-value=9.7e-11 Score=106.82 Aligned_cols=140 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......+...++.++.|+++||+|||+.+..+.....++.+..... .+.+.......+.+.+.+...
T Consensus 48 ~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~ 116 (471)
T PRK10504 48 HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----------GTLNELLLARVLQGVGGAMMV 116 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhhhHHHH
Confidence 466777788888999999999999999999988877777666554431 223344455555555555433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
+ .....+.|.+|+++|+++.|+.+....++..++|.+.+.+.++.||++.|.+......+..+......++
T Consensus 117 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 117 P-VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3 3337778999999999999999999999999999999999999999999988777666666555554444
No 146
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.28 E-value=1.2e-10 Score=103.77 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+...++.++.|+++||+|||+.+..+.....++....... .+.+.......+.+.+.+..
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~~~- 113 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----------HSLTVLIAASAIQGLGTGVG- 113 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHhhhhHH-
Confidence 577888889999999999999999999999988877777766655442 12233344444444433322
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.+.......|..++++++.+++..+....++..++|.+.+.+.++.||+..+++.+....+..+......||++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 114 GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 22333566788888899999999999999999999999999999889999998877766655554444456543
No 147
>PRK03699 putative transporter; Provisional
Probab=99.28 E-value=1.5e-10 Score=103.10 Aligned_cols=134 Identities=11% Similarity=0.104 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......++..++.++.|++.||+|||+.+..+.....++..+.... ++.+...+...+.+.+.+...
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~-----------~~~~~~~~~~~l~G~~~g~~~ 113 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS-----------HSLALFSIAMFVLGVVSGITM 113 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----------chHHHHHHHHHHHHHhhHhhc
Confidence 577788889999999999999999999999988887777777666552 223344445555555555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHh
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFT 295 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~ 295 (318)
.... ..+.|.+|+++|++..+..+....+++.++|.+.+.+.+ ..+|+..|.+.+...++..++.
T Consensus 114 ~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 114 SIGT-FLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred cchh-HHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 4444 677899999999999999988888999999999888875 4689999988777665554433
No 148
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.27 E-value=1.3e-10 Score=103.97 Aligned_cols=141 Identities=15% Similarity=0.078 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.......++..++.++.|+++||+|||+.+..+.....++....... .+.+.......+.+...+...
T Consensus 52 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~- 119 (406)
T PRK15402 52 TSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----------QSIEQFTLLRFLQGIGLCFIG- 119 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHhHhhhHH-
Confidence 56677888899999999999999999999998887777776665542 223333444444444433322
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
+.....+.|.+|+++|.+..++......++..++|.+.+.+.++.+|++.+++.+....+..+..+...||++
T Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3333667899999999999999998888999999999999999899999998888777766665555556543
No 149
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.26 E-value=2e-11 Score=107.50 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHhhcccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV--LMLFAARFIAGVATGGLSA 109 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~--~~l~~~r~l~G~~~g~~~~ 109 (318)
++.++++.+++.+...++..++.++.|++.||+|||+.+..+..+..++.+...+.++. ..++...++.|++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 77888889999999999999999999999999999999999998888888877776643 3345667888998888888
Q ss_pred ccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658 110 IIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183 (318)
Q Consensus 110 ~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 183 (318)
...+++.|.+|+++|++..+ .......++..++.++.|.+.|..|.+......
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g---------------------~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~ 367 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYG---------------------FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVT 367 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhH---------------------HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Confidence 88899999999999999988 788888899999999999999999877655543
No 150
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.26 E-value=9e-11 Score=105.59 Aligned_cols=124 Identities=21% Similarity=0.155 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+.......++..++.++.|++.||+|||+.+..+.....++..+..+. .+.+...+.-.+.+.+.+...
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r~l~G~g~g~~~ 124 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA-----------SGVIMLTLSRFIVGMGMAGEY 124 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHhhHH
Confidence 477788889999999999999999999999999988888887766653 223444555555555554444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFS 285 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 285 (318)
.... .++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+..+++..
T Consensus 125 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 125 ACAS-TYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHH-HHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 4444 777899999999999999999999999999999999988889998887643
No 151
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.26 E-value=5.9e-11 Score=108.03 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
|.......+...++.+++|+++|| +|||+++..+..+..++..++... ...+.......+.+.+.+..
T Consensus 51 g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----------IYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----------ccHhHHHHHHHHHHhccccc
Confidence 477788888999999999999999 899999999998888888776652 11223333344444444433
Q ss_pred ccccceeeeccccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q psy16658 229 YGPIPWMMVGELFAPEV---KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTL 293 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 293 (318)
.+ ...+..+|.+|+++ |+++.++.+...++|..++|.+.+.+.++.||+..|.+.+...+++.+
T Consensus 120 ~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l 186 (475)
T TIGR00924 120 KA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL 186 (475)
T ss_pred cC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 33 33377778887654 888999999999999999999999999999999999887655544433
No 152
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.25 E-value=4e-11 Score=106.33 Aligned_cols=137 Identities=12% Similarity=0.102 Sum_probs=121.0
Q ss_pred ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658 11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV 90 (318)
Q Consensus 11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~ 90 (318)
........|.+.+| .|.++.+.|++.+...++..+..++++++.||+|+|+.+.++.++..+..+..+++++.
T Consensus 221 ~~~~~~~~~~~l~~-------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~ 293 (382)
T TIGR00902 221 HAAYYGFSAIYWQA-------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAF 293 (382)
T ss_pred HHHHHHHHHHHHHH-------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 33344455666666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHH
Q psy16658 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVV 169 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~ 169 (318)
+.+++.+++.|+..+...+....++.+. |+++|++..+ ... ...+++..+++.++|+
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~---------------------~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQA---------------------LYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 9888887666 443 4567889999999999
Q ss_pred HhhccCC
Q psy16658 170 LVDKAGR 176 (318)
Q Consensus 170 l~d~~g~ 176 (318)
+.|++|.
T Consensus 352 l~~~~g~ 358 (382)
T TIGR00902 352 IYPTLGA 358 (382)
T ss_pred HHHhccH
Confidence 9999985
No 153
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.25 E-value=5.8e-11 Score=105.88 Aligned_cols=134 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhh
Q psy16658 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGE 117 (318)
Q Consensus 38 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 117 (318)
+.++..+.+.++..++.++.|++.||+||||.+..+..+..++.++..+.++.+.+++.+++.|++.+...+.......|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45667778888999999999999999999999999988888888888888888888889999999999888888888899
Q ss_pred ccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658 118 IAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG 192 (318)
Q Consensus 118 ~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 192 (318)
..|+++|+++.+ .......++..++.++.|++.|+.|.+..+.....+..++.+
T Consensus 330 ~~~~~~~g~~~g---------------------~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 383 (399)
T PRK05122 330 RVPPQNRGAALG---------------------AYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLA 383 (399)
T ss_pred hCCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999998 777778888888899999999999977666655444444433
No 154
>PRK11043 putative transporter; Provisional
Probab=99.25 E-value=2.3e-10 Score=102.15 Aligned_cols=137 Identities=18% Similarity=0.055 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......++..++.++.|+++||+|||+.+..+.....++....... .+.+.......+.+.+.+...
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~ 112 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----------ESAAQLLVLRFVQAVGVCSAA 112 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhhHHHH
Confidence 578888899999999999999999999999998877777666655542 223333444444444333222
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
. .......|.+|+++++...+..+....++..++|.+.+.+.++.||+..+++.+....+..+.....
T Consensus 113 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 113 V-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred H-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2235667889999899999999999999999999999999999999998888877776665554443
No 155
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.23 E-value=6.4e-11 Score=107.83 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.....+.++..+++++.|++.||+|+|+.+..+.++..++.++...... ...+..++.-.+.+.+.+...
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG---------GGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH---------cCchHHHHHHHHHHHhcccch
Confidence 68888899999999999999999999999999888777766655433210 112233444445555544444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHhheecc
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-GSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
+... .++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||+..|.+.++..++..++.+...+
T Consensus 150 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 150 PATH-KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred hhHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 4444 78899999999999999999999999999999999999984 9999999888777666555544443
No 156
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.22 E-value=8.1e-11 Score=105.53 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=105.1
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHhhccccccc
Q psy16658 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK----NVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
+.++.+...+...++..++.++.|++.||+|||+++..+.++..++........ +++.+++.+++.|++.+...+.
T Consensus 249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~ 328 (418)
T TIGR00889 249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS 328 (418)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 446779999999999999999999999999999999999999888876666632 3466778899999999988889
Q ss_pred cchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCC
Q psy16658 111 IPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGR 176 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~ 176 (318)
...++.|++|+++|+++.+ ... ...+++..++.++.|++.|+.|.
T Consensus 329 ~~~~i~~~~p~~~~g~~~g---------------------~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 329 GSVFVEKEVPVHIRASAQG---------------------LFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred HHHHHHHHCCHHHHHHHHH---------------------HHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999998 664 45778999999999999999764
No 157
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.22 E-value=9.9e-11 Score=110.60 Aligned_cols=114 Identities=14% Similarity=0.115 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhc
Q psy16658 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEI 118 (318)
Q Consensus 39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 118 (318)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++.+++.|++.+..++...++++|+
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl 676 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL 676 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677899999999999999999999999999999999999999999888888889999998888899999999999
Q ss_pred cCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658 119 AESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDK 173 (318)
Q Consensus 119 ~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 173 (318)
+|.++|+++++ +......++.+++.++.+.+.+.
T Consensus 677 ~Pt~~Rgta~G---------------------i~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 677 YPSDKRATAFG---------------------FLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred cCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 88888889999999999988765
No 158
>KOG2325|consensus
Probab=99.22 E-value=1.7e-11 Score=108.57 Aligned_cols=120 Identities=16% Similarity=0.183 Sum_probs=96.8
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcc-hhHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGR-KPVILAFCIPFIISWV 82 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~ 82 (318)
+++.+.......+..-.+.++. |.+.+.+..|++.++..++.+++.+..|++..|.+. |+.++.+.++..++++
T Consensus 43 sfl~~v~~sI~~~s~wpYl~~l-----D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~l 117 (488)
T KOG2325|consen 43 SFLVAVQFSIYLTSMWPYLQKL-----DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNL 117 (488)
T ss_pred HHHHhhhheEEEeecchhhhhc-----CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHH
Confidence 3445555555555554444432 378889999999999999999999999999999997 8899999999999999
Q ss_pred HH-HHH---h-hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 83 LI-LFA---K-NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 83 ~~-~~~---~-s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
+. ++. + .-+.++++|++.|+|.| .....-+|+++....++|.++++
T Consensus 118 lY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a 168 (488)
T KOG2325|consen 118 LYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFA 168 (488)
T ss_pred HHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHH
Confidence 88 443 3 56889999999999966 45677899999888888888887
No 159
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.22 E-value=7.7e-09 Score=89.30 Aligned_cols=234 Identities=15% Similarity=0.006 Sum_probs=165.1
Q ss_pred CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHH-HHHHHHHHHHHHHHH-----h--------hH-
Q psy16658 31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILA-FCIPFIISWVLILFA-----K--------NV- 90 (318)
Q Consensus 31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~--------s~- 90 (318)
|++++....+...+...+... ..+.+|+.+|+.+ ||..+++ +..+...+..+.+++ . .+
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 388999999999999888765 5999999999998 7776554 666666655555553 2 22
Q ss_pred --HHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhh------------------------------------h
Q psy16658 91 --LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGG------------------------------------L 132 (318)
Q Consensus 91 --~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~------------------------------------~ 132 (318)
....+...+.|+|.+...+...+++.|..|+|+|+++.+.+ .
T Consensus 88 g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i 167 (403)
T PF03209_consen 88 GLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI 167 (403)
T ss_pred HHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence 23445667899999999999999999999999999998800 0
Q ss_pred Hh---HHhHHHHHHhh-------cccc----------------------------------------------------h
Q psy16658 133 SA---IIPMFIGEIAE-------SSIR----------------------------------------------------G 150 (318)
Q Consensus 133 ~~---~~p~~~~~~~~-------~~~~----------------------------------------------------g 150 (318)
.. .+...-.|.+. ++++ -
T Consensus 168 ~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT 247 (403)
T PF03209_consen 168 ALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETT 247 (403)
T ss_pred HHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHH
Confidence 00 00000011110 0000 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVD-KAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
.++...+.+..++....|++.. |.++++....++.....++..+..... ..+.+.......+++.+.+...
T Consensus 248 ~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--------~~~~~~~~~~~~l~G~g~G~f~ 319 (403)
T PF03209_consen 248 RLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGP--------LGSPWLFRPGVFLLGLGNGLFT 319 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHhhhHHH
Confidence 5666777777888888887766 677788888888888887776665422 2335566666777777666654
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
.... +.+-++.++++.|..+|.-...+.....++..+.|.+.|.
T Consensus 320 vgal-s~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 320 VGAL-SLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHH-HHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4555888888899999999999999999999999999885
No 160
>PRK12382 putative transporter; Provisional
Probab=99.22 E-value=8.2e-11 Score=104.68 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhh
Q psy16658 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGE 117 (318)
Q Consensus 38 ~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 117 (318)
+.++..+.+.++..++.++.|++.||+||||.+..+..+..++.++..+.++.+.+.+.+++.|++.+...+...+.+.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 250 MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35666777888888999999999999999999999999988888888888888888889999999999888888889999
Q ss_pred ccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHH
Q psy16658 118 IAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMAL 189 (318)
Q Consensus 118 ~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 189 (318)
.+|+|+|+++.+ .......++..++.++.|++.|+.|.+..+.....+..+
T Consensus 330 ~~~~~~~g~~~g---------------------~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~ 380 (392)
T PRK12382 330 RVPSQVRGTALG---------------------GYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVL 380 (392)
T ss_pred hcCHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 999999999998 788888899999999999999999977766655443333
No 161
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.22 E-value=2.5e-10 Score=104.76 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+.......++..++.++.|++.||+|||+.+..+.++..++.+..... .+.+.......+.+.+.+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~ 126 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA-----------PGYWTLFIARLVIGMGMAGEY 126 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 577888888999999999999999999999998888887777776652 223344444555555444433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV 286 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 286 (318)
.... .++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.+|+..+.+...
T Consensus 127 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~ 182 (496)
T PRK03893 127 GSSA-TYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL 182 (496)
T ss_pred HHHH-HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4334 7778999999999999999999999999999999999999999988876433
No 162
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.21 E-value=3e-10 Score=101.41 Aligned_cols=129 Identities=15% Similarity=0.044 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.....+.++..+++++.|++.||+||||.+..+..+..++.......... ..+.+.......+.+.+.+...
T Consensus 51 g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~i~G~g~~~~~ 123 (402)
T TIGR00897 51 ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLG-------HANYPLILLFYGIRGLGYPLFA 123 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHcchHHHH
Confidence 477888999999999999999999999999998888877765543221000 0122233333334444433322
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISA-FIVTLCFVFLVKNLGSAATFWIFSV 286 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~ 286 (318)
.... ....|..|+++|++++|+.+....+|. ..+|.+.+.+.+..|++..++....
T Consensus 124 ~~~~-~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 124 YSFL-VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred hHHH-HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 2233 556688899999999999999999986 5889999998888886555444433
No 163
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.21 E-value=1.5e-10 Score=103.15 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=114.1
Q ss_pred cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy16658 16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFA 95 (318)
Q Consensus 16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~ 95 (318)
..+|.+.++. ++.++.+.+++.+...+...++.++.|+++||+|||+.+..+.....+........++++.+++
T Consensus 237 ~~~p~~l~~~------~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 310 (393)
T PRK15011 237 INMPLFIINE------LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG 310 (393)
T ss_pred HHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3456555432 7889999999888888888889999999999999999888777666665555556778888888
Q ss_pred HHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658 96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG 175 (318)
Q Consensus 96 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g 175 (318)
.+++.+++.+...+....+..|..|+ +|+++.+ .......++..++..+.|.+.|++|
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~---------------------~~~~~~~lg~~~g~~l~G~i~~~~g 368 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATT---------------------LYTNTSRVGWIIAGSLAGIVAEIWN 368 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99988888777777777888898885 4887777 6666778899999999999999998
Q ss_pred CeehhhhhhHHHHHH
Q psy16658 176 RRILLLLSDFVMALC 190 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~ 190 (318)
.+.....+.....++
T Consensus 369 ~~~~~~~~~~~~~~~ 383 (393)
T PRK15011 369 YHAVFWFALVMIIAT 383 (393)
T ss_pred hHHHHHHHHHHHHHH
Confidence 776655444333333
No 164
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.20 E-value=1e-09 Score=94.28 Aligned_cols=185 Identities=12% Similarity=0.102 Sum_probs=127.0
Q ss_pred HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH-------------------------
Q psy16658 85 LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS------------------------- 133 (318)
Q Consensus 85 ~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~------------------------- 133 (318)
....+|+.++++-++.|.|.+..++..+.++++..|+|++.+.++ +++.
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 356789999999999999999999999999999999998887777 1111
Q ss_pred ------hHHhHHH-----------------HHHhh--------cc---------cc------------------------
Q psy16658 134 ------AIIPMFI-----------------GEIAE--------SS---------IR------------------------ 149 (318)
Q Consensus 134 ------~~~p~~~-----------------~~~~~--------~~---------~~------------------------ 149 (318)
.-.|.+. +|.++ ++ ++
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~ 164 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLV 164 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123221 11000 00 00
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchh
Q psy16658 150 ----------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213 (318)
Q Consensus 150 ----------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (318)
+.....+..+.++++++.+++.||+++||.+..+..+..++..+.... . ...
T Consensus 165 ~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----------~-~~~ 232 (310)
T TIGR01272 165 NFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----------H-GYV 232 (310)
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----------C-CHH
Confidence 355677888899999999999999999998877766666555333321 1 111
Q ss_pred HHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF 284 (318)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 284 (318)
......+.+.+.+..++... +...+..|++ .+++.++. ....+|+.+.|.+.|.+.|+.|.+..+++.
T Consensus 233 ~~~~~~l~g~~~s~i~P~~~-s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 233 AMWFVLALGLFNSIMFPTIF-SLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 23344455555555555544 5555666654 46667764 677899999999999999999987777643
No 165
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.20 E-value=3.8e-10 Score=99.33 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+..+..++.++..... .+.+.......+.+.+.. ..
T Consensus 40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~g~~~~-~~ 108 (366)
T TIGR00886 40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAV----------QSYSVLLLLRLFIGIAGG-SF 108 (366)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHhch-hh
Confidence 5888889999999999999999999999999999888888877766531 023334444444444422 23
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hchhhHH-HHHHHHHHHHHHHhhee
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN----------LGSAATF-WIFSVICFVGTLFTFVL 298 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~-~~~~~~~~~~~~~~~~~ 298 (318)
.+.. .++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+|++.+ ...+....+..++....
T Consensus 109 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 187 (366)
T TIGR00886 109 ASCM-PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV 187 (366)
T ss_pred HhHH-HHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 3333 6778999999999999999988888888888888777653 3688777 33344444333333333
Q ss_pred ccC
Q psy16658 299 VPE 301 (318)
Q Consensus 299 ~~~ 301 (318)
.++
T Consensus 188 ~~~ 190 (366)
T TIGR00886 188 GAD 190 (366)
T ss_pred ccc
Confidence 333
No 166
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.20 E-value=2.9e-10 Score=101.22 Aligned_cols=128 Identities=14% Similarity=0.039 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+....+.++..++.+..|++.||+|||+++..+..+.+++.+...+. ++.+..+..-.+.+.+.+...
T Consensus 47 g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a-----------~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 47 ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY-----------PQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------cchHHHHHHHHHHHhHHHHHh
Confidence 688888889999999999999999999999999999999999888773 334455556666666666554
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-GSAATFWIFSVICFV 290 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~ 290 (318)
.... ..+.|.+| ++|+.++|........|..+++.+.+.+.++. +|+..+...+...++
T Consensus 116 ~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~ 175 (393)
T PRK09705 116 AVMP-SVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV 175 (393)
T ss_pred hhhh-HHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444 66777776 67999999999999999999999999998885 788877665554443
No 167
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.19 E-value=1.2e-10 Score=106.38 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=139.9
Q ss_pred cccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 8 GTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 8 ~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
++..+....++|.+.++. +|.++...|++.+++.+|..++.++.+++.+|+++++.+..+.+..+++.+..+++
T Consensus 231 ~l~~~a~~aLlPl~a~~~------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~ 304 (524)
T PF05977_consen 231 NLFASAVWALLPLFARDV------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS 304 (524)
T ss_pred HHhhhHHHHhhhHHHHHH------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc
Confidence 334444556788888765 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS 167 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (318)
++.+..++..++.|++.....+...+.+.+..|++.|||+++ ........+..+|..+.
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~s---------------------i~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFS---------------------IYQMVFFGGMPLGSLLW 363 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988889999999999999999999 77888888889999999
Q ss_pred HHHhhccCCeehhhhhhHHHHHHHHHH
Q psy16658 168 VVLVDKAGRRILLLLSDFVMALCLGVL 194 (318)
Q Consensus 168 g~l~d~~g~~~~~~~~~~~~~~~~~~~ 194 (318)
|.++|.+|.+..+.++.+...++.++.
T Consensus 364 G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 364 GFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999888876655544444433
No 168
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.19 E-value=7.3e-10 Score=101.11 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.......++..++.++.|+++||+|||+.+..+.+..+++.++..+. .+.+...+...+.+.+.+. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----------~s~~~l~~~r~l~G~~~~~-~~ 142 (476)
T PLN00028 75 NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV-----------SSATGFIAVRFFIGFSLAT-FV 142 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHh-hH
Confidence 55667777888899999999999999999988877777766655542 1223333333444444332 23
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK---------NLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+.. .++.|.+|+++|++++|+.+...++|..+++.+.+.+.+ ..||++.|.+.+.+.++..++.+++.
T Consensus 143 ~~~-~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 143 SCQ-YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred HHH-HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 333 456899999999999999998888888888777765543 14799999988887776665555433
No 169
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.19 E-value=1.5e-10 Score=104.57 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+.++.+++.......... ..+.+.......+.+.+.+..+
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~g~~~g~~~ 136 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-------TSSIAIMFVLLFLNGWFQGMGW 136 (438)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-------cchHHHHHHHHHHHHHHhhcch
Confidence 377788889999999999999999999999988877777766655432100 0112222333444455555444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
++.. ..+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.+..+++..+..++..||+
T Consensus 137 ~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 137 PPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4444 666789999999999999999999999999988876554 46899999988887777665555555543
No 170
>KOG3762|consensus
Probab=99.18 E-value=9.8e-11 Score=103.19 Aligned_cols=135 Identities=17% Similarity=0.251 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|....+.-.+.++.-++.+++.+|+|+-+++..++.+..+=++.+... .++|..+-.-.+-+...+..+
T Consensus 409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----------~n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----------QNPWMVLPIEILQGITHALIW 477 (618)
T ss_pred eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------cCchheeeHHHHHHHHHHHHH
Confidence 455666667788888999999999999999998877777766666553 567777778888888888888
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhh
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
..+. +|+....||+.|.++.++..... .+|-.+|++++|.+.+++|.+..|.++++.+++..++..
T Consensus 478 aa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 478 AAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred HHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 8888 99999999999999999998775 578899999999999999999999998888777655443
No 171
>KOG3764|consensus
Probab=99.18 E-value=4.5e-11 Score=101.67 Aligned_cols=145 Identities=17% Similarity=0.239 Sum_probs=124.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
-|++.....+.+.+.+++.|.+.||+|+|..+..+..++..+.+++++. +..+..+++=.+-+.+.+..
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg-----------~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG-----------NSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc-----------chhHHHHHHHHHhhhhHHHH
Confidence 3899999999999999999999999999999999999999999998883 44556666666777776665
Q ss_pred ccccceeeeccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCC
Q psy16658 229 YGPIPWMMVGELFAPEV-KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK 305 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
...-. ++++|.+|+++ |++++|+.-....+|-.++|..+|.++|..|++..|.+.+.++++-..+.++.++.++.+
T Consensus 177 ~tsgl-amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 177 DTSGL-AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HhhhH-HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 55555 78889998776 699999999999999999999999999999999999999999999888887776654433
No 172
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.17 E-value=1.7e-10 Score=101.91 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=110.0
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
+|.++.+.+++.+.......++.++.|++.||+|||+++..+..+..+......+.++.+.+.+.+++.|++.+...+..
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 309 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIG 309 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999998888877778889999999999999999888877766666666677888888889999999988888888
Q ss_pred chhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658 112 PMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 186 (318)
..+..|..|++ |+++.+ .......++..++..+.|.+.|+.|.+.........
T Consensus 310 ~~~~~~~~~~~-~~~~~~---------------------~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~ 362 (375)
T TIGR00899 310 MLYFQDLMPGR-AGAATT---------------------LYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVM 362 (375)
T ss_pred HHHHHHhCcch-hhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88999988764 557776 677777788999999999999999877665544333
No 173
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.17 E-value=4.1e-10 Score=102.18 Aligned_cols=135 Identities=17% Similarity=0.214 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHH-HHHHHHHHhc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSV-IFFIVMFSLG 228 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 228 (318)
++......+...++.++.|+++||+|||+.+..+..+..++.+...+. .+.+...... .+.+.+.+..
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~l~G~~~~~~ 125 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS-----------SNVIELYLTAGFITGLGLAFN 125 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHhcchhh
Confidence 566677777778888999999999999999998887777766665442 1122222222 3334444333
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
..+.. ..+.+.+| ++|+++.|+.+....++..++|.+.+.+.+..||+..|++.+.+.++..+..++
T Consensus 126 ~~~~~-~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 126 FQPSL-TMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred hhHHH-HHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 33333 55667775 679999999999999999999999999999999999999988877655444333
No 174
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.17 E-value=1.3e-10 Score=105.77 Aligned_cols=144 Identities=12% Similarity=-0.023 Sum_probs=105.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
-|+....+.++..++.++.|+++||+|+|+.+..+.+..++....+....... ..+.+..+..-.+.+.+.+..
T Consensus 66 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G~~~~~~ 139 (467)
T PRK09556 66 LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG------SVSLGLMIALWALSGFFQSTG 139 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHHHHHHHHHhcc
Confidence 37888889999999999999999999999999888877777666655421111 122344455555566665655
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---chhhHHHHHHHHHHHHHHHhheec
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL---GSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.+... .++.|.+|+++|++++|+......+|..+++.+...+.+.. +|+..|.+.+.+.++..++.++..
T Consensus 140 ~~~~~-~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~ 212 (467)
T PRK09556 140 GPCSY-STITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYG 212 (467)
T ss_pred chHHH-HHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhC
Confidence 54444 78899999999999999999999999999998887776653 477777766666655545444443
No 175
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.16 E-value=2.1e-10 Score=103.54 Aligned_cols=131 Identities=19% Similarity=0.257 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
.....+.....++.+++|+++||+ ||||.+..+.+...++..++... ............+...+.+...
T Consensus 49 ~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~----------~~~~~~~~l~l~li~iG~G~~~ 118 (493)
T PRK15462 49 ELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS----------EIHPSFLYLSLAIIVCGYGLFK 118 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHhccccc
Confidence 566677778888999999999998 99999999988888777655431 0001112222222323333322
Q ss_pred cccceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGT 292 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 292 (318)
+... ++..|.+|++ +|.++.++.+...++|+.++|.+.+.+.++.||+..|.+.+....++.
T Consensus 119 ~~~~-alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 119 SNVS-CLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred ccHH-HHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence 3333 7789999875 699999999999999999999999999999999999987655444433
No 176
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.16 E-value=7.2e-10 Score=101.92 Aligned_cols=145 Identities=13% Similarity=0.083 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.......++..++.++.|+++||+|||+.+..+.++..++.++...... .. .....+..++.-.+.+.+.+...+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~----~~-~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG----SS-PKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC----cc-cchHHHHHHHHHHHHHHHHhhhhH
Confidence 6778888999999999999999999999999888877777665554210 00 001123445555666666666555
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhchhhHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-----------------------NLGSAATFWIFSVI 287 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~ 287 (318)
... .+..|.+|+++|+++.++.+....+|..+++.+...+.. ..+|+..+.+.+..
T Consensus 135 ~~~-~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip 213 (502)
T TIGR00887 135 LSA-IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVP 213 (502)
T ss_pred HHH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHH
Confidence 555 899999999999999999999999999999988776542 13688888655554
Q ss_pred HHHHHHHhheeccCC
Q psy16658 288 CFVGTLFTFVLVPET 302 (318)
Q Consensus 288 ~~~~~~~~~~~~~~~ 302 (318)
.++. .+..+.+||+
T Consensus 214 ~~i~-~~~~~~lpES 227 (502)
T TIGR00887 214 ALLA-LYFRLTIPET 227 (502)
T ss_pred HHHH-HHHHHhCCCC
Confidence 4443 3334456775
No 177
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.16 E-value=2.4e-10 Score=102.63 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=113.6
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
.+.+..+.|++.++..+...++.+++|++.||+|||+.+..+..+..++.++.+++++.+.+++.+++.|++.+...+..
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 336 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV 336 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788999999999999999999999999999999999999999988888899999999999999999988887888
Q ss_pred chhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658 112 PMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 186 (318)
..++.|.+|++.|+...+ . ......++.+++.++.|++.|..|.+........+
T Consensus 337 ~~~~~~~~~~~~~a~~~~---------------------~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~ 391 (420)
T PRK09528 337 FKYITLNFDVRLSATIYL---------------------VGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI 391 (420)
T ss_pred HHHHHHHcCccceeeeee---------------------ehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence 889999999988875543 2 34456788889999999999999977666654333
No 178
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.16 E-value=5.1e-10 Score=101.52 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..+++++.|+++||+|||+.+..+..+.+++.+.+.+.... ..+.+.......+.+.+.+...
T Consensus 66 g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~l~gi~~g~~~ 138 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------TSSIAVMFVLLFLCGWFQGMGW 138 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc-------cccHHHHHHHHHHHHHHHhccc
Confidence 477788889999999999999999999999999888877777666543100 1122333444455555555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFI-VTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
++.. ..+.|.+|+++|++++|+.+....+|..+ +|.+...+....||+..|++.+....+..++..++.||+
T Consensus 139 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 139 PPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred hHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4444 56678899999999999999998888654 554433343445899999888777666655555555543
No 179
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.15 E-value=8e-10 Score=101.00 Aligned_cols=152 Identities=15% Similarity=0.089 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCc-ccchhHHHHHHHHHHHHHhc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVS-SISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 228 (318)
|+......++..++.++.|+++||+|||+.+..+..+..++.+................ ...+..++.-++.+.+.+..
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence 47888899999999999999999999999999988887777665554211110000001 11222334445555555554
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
.+... +++.|.+|+++|+++.++.+....+|..+++.+.+.+. +..||++.|++.+...++..+. .+++|
T Consensus 138 ~~~~~-~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~ 215 (479)
T PRK10077 138 SMLSP-MYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVP 215 (479)
T ss_pred hhHHH-HHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCC
Confidence 45445 88899999999999999999998999888877665443 3468999988776666655443 44566
Q ss_pred CCC
Q psy16658 301 ETK 303 (318)
Q Consensus 301 ~~~ 303 (318)
|+.
T Consensus 216 ~s~ 218 (479)
T PRK10077 216 ETP 218 (479)
T ss_pred CCc
Confidence 653
No 180
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.13 E-value=2e-09 Score=96.32 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++++..|++.||+|||+.+..+..+.+++..+...... ..+.+..+....+.+.+.+...
T Consensus 41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------~~~~~~~l~~~~l~G~g~g~~~ 112 (410)
T TIGR00885 41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------IMNYTLFLVGLFILTAGLGFLE 112 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHhhHHHHH
Confidence 57888899999999999999999999999999999888888766543210 1223444555556666666555
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HhchhhHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK--------------------------NLGSAATFWI 283 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~--------------------------~~g~~~~~~~ 283 (318)
.+.. .+..+..|+++|++..++.+....+|..++|.+.+.+.. ..+|+..|.+
T Consensus 113 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~ 191 (410)
T TIGR00885 113 TAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMI 191 (410)
T ss_pred hhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 566788899999999999999999999999999887752 2358888887
Q ss_pred HHHHHHHHHHHh
Q psy16658 284 FSVICFVGTLFT 295 (318)
Q Consensus 284 ~~~~~~~~~~~~ 295 (318)
.+.+.++..++.
T Consensus 192 ~a~~~~~~~~~~ 203 (410)
T TIGR00885 192 IGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHH
Confidence 777666554443
No 181
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.12 E-value=5.5e-09 Score=93.53 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
.++...+..+...+.++..|++.||+|.|+.+..+..+..+......+.... ...+.+..++...+.+.+ +..
T Consensus 72 ~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~------~~~s~~~lli~r~l~Gig-g~~ 144 (462)
T PRK15034 72 LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN------PNTPFGIFIVIALLCGFA-GAN 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc------cCCCHHHHHHHHHHHHHH-HHh
Confidence 3688888899999999999999999999999998888877777666542100 012234445555555554 334
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----H-------------HhchhhHHHHHHHHHHH
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV-----K-------------NLGSAATFWIFSVICFV 290 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~-----~-------------~~g~~~~~~~~~~~~~~ 290 (318)
+.+.. ..+++.+|+++||++.|+....+++|..+++.+.+.+. + ..+++.+..++..+.++
T Consensus 145 f~~~~-~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv 223 (462)
T PRK15034 145 FASSM-GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAI 223 (462)
T ss_pred HHHHH-HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence 44444 77889999999999999998788888777766665544 2 23355666666666666
Q ss_pred HHHHhheeccC
Q psy16658 291 GTLFTFVLVPE 301 (318)
Q Consensus 291 ~~~~~~~~~~~ 301 (318)
..++.++..++
T Consensus 224 ~~i~~~~~~~~ 234 (462)
T PRK15034 224 ATIAAWSGMND 234 (462)
T ss_pred HHHHHHHhCCC
Confidence 66666655544
No 182
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.12 E-value=8.6e-10 Score=101.09 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
.....++..++.++.|+++||+|||+.+..+.++++++.++..+........ .......+..-.+.+.+.+..++..
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g---~~a~~~l~~~R~l~G~g~g~~~~~~ 139 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIG---IWAPILLLLCKMAQGFSVGGEYTGA 139 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHH---HHHHHHHHHHHHHHHhHhHhhHHHH
Confidence 3556677889999999999999999999999999988888877631100000 0000113344445555555544444
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
. .++.|.+|+++|+...++......+|..+++.+...+. ++.||+..|++.+...++. ++.....||+
T Consensus 140 ~-~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~es 215 (490)
T PRK10642 140 S-IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEET 215 (490)
T ss_pred H-HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence 4 88899999999999999988888788877776655443 2578999998866544433 3333345554
No 183
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.11 E-value=2.5e-09 Score=96.42 Aligned_cols=136 Identities=19% Similarity=0.101 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP 231 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
......++..+++++.|+++||+|||+.+..+....+++.+...+....... ...........-.+.+.+.+..++.
T Consensus 68 ~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~R~l~G~g~g~~~~~ 144 (432)
T PRK10406 68 VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETI---GTWAPALLLLARLFQGLSVGGEYGT 144 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 3444556666999999999999999999999988888888776653110000 0000112333444555554444444
Q ss_pred cceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHHHHHHHH
Q psy16658 232 IPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFSVICFVG 291 (318)
Q Consensus 232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~ 291 (318)
.. +++.|..|+++|++..++.......|..+++.+...+. +..||+..|.+.+...++.
T Consensus 145 ~~-~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 145 SA-TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HH-HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 44 88899999999999999888777777777776655443 2578999998766655543
No 184
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.11 E-value=6.4e-10 Score=101.49 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+....+........+++|+++|| +||||.+..+.++..++.+.+.... ...........+.+.+.+...
T Consensus 54 ~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~----------~~~~ll~~~~~l~~ig~g~~~ 123 (489)
T PRK10207 54 ITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL----------LKPDLIFIALGTIAVGNGLFK 123 (489)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHhcccccc
Confidence 44455555666677799999999 9999999999999988887776521 111112233444444444444
Q ss_pred cccceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSV 286 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 286 (318)
+... +.+.|.+|++ +|+++.++.+...++|..++|.+.|.+.++.||++.|++.+.
T Consensus 124 ~~~~-~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 124 ANPA-SLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred CCHH-HHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 4444 8888999877 457899999999999999999999999999999999988544
No 185
>TIGR00898 2A0119 cation transport protein.
Probab=99.10 E-value=1.6e-09 Score=99.82 Aligned_cols=137 Identities=15% Similarity=0.096 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+.++..++.++..+. .+.+...+...+.+.+.+..
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~- 197 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS-----------PNYTVFLVFRLLVGMGIGGI- 197 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHhhccch-
Confidence 588888999999999999999999999999999888877777666552 22344444445544444433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.+....++.|.+|+++|+.+.++......+|..+++.+...+.+ |++.+++.+...++..+.. ++.||+
T Consensus 198 ~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 198 WVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred HHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 44444888999999999999999988888898888887765543 8888888777666655544 445553
No 186
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.10 E-value=8.2e-10 Score=100.43 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+..+..++.++...... ....+..++...+.+.+.+...
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~~~ 145 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF--------ALSVEMLIVGRVLLGIGVGIAS 145 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHH
Confidence 47888899999999999999999999999999888887777766644211 1112344555555666555544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF---VFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
... ..++.|.+|+++|+++.++.+....+|..+++.+. +...+..+|+..|.+.+...++..+ ...+++|+
T Consensus 146 ~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~-~~~~l~~~ 219 (481)
T TIGR00879 146 ALV-PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL-GLFFLPES 219 (481)
T ss_pred hHH-HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH-HHhcCCCC
Confidence 433 37889999999999999999999999999999988 5555667899888885555444433 33445553
No 187
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.09 E-value=2.4e-09 Score=94.99 Aligned_cols=152 Identities=12% Similarity=0.109 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALS 167 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (318)
.+.+.+..+-++.+++.+...+....+..|.--.+. .-|+......++..+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~------------------------~~G~~~s~~~l~~~~~~~~~ 61 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTW------------------------QVGVVSSSYFTGNLVGTLLA 61 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHH------------------------HHHHHHHHHHHHHHHHHHhH
Confidence 456666677777777777776666655554321110 11478888999999999999
Q ss_pred HHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658 168 VVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247 (318)
Q Consensus 168 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 247 (318)
|++.||+|||+.+..+.....++....... ++.+...+...+.+.+.+....... ....+..|+++|+
T Consensus 62 g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~G~~~~~~~~~~~-~~~~~~~~~~~~~ 129 (381)
T PRK03633 62 GYVIKRIGFNRSYYLASLIFAAGCAGLGLM-----------VGFWSWLAWRFVAGIGCAMIWVVVE-SALMCSGTSRNRG 129 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHH
Confidence 999999999999999888888777766552 2344445555555555544333333 4445778888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658 248 SATGIAVALNWISAFIVTLCFVFLVKNL 275 (318)
Q Consensus 248 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 275 (318)
++.+..+...++|..++|.+.+.+.+..
T Consensus 130 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 130 RLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999887653
No 188
>KOG2532|consensus
Probab=99.08 E-value=2.5e-09 Score=96.19 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|++......+.+++.+..|++.||+|-|+++..+.++.++..++..+.... ..+..++.-.+.+...+..+
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---------~~~~~~~~R~lqGl~~g~~~ 146 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---------GFYLLLVLRFLQGLGQGVLF 146 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---------cchhhHHHHHHhHHHHhHHH
Confidence 688899999999999999999999999999999999999888888775322 22344666666777777766
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
+.+. ....+..|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+.++.+..++.+.+..
T Consensus 147 pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 147 PAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred hhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 6666 8888999999999999999999999999999999999999 99999999999998887776655554
No 189
>PRK15075 citrate-proton symporter; Provisional
Probab=99.08 E-value=2.1e-09 Score=97.05 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccc
Q psy16658 161 FIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGEL 240 (318)
Q Consensus 161 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (318)
.++.++.|++.||+|||+.+..+.....++..+..+........ .......++.-.+.+.+.+...+... .++.|.
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~-~~~~e~ 145 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIG---LAAPLLVLLGRLLQGFSAGVELGGVS-VYLAEI 145 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHH---HHHHHHHHHHHHHhhccccccHHHHH-HHHHhh
Confidence 46788999999999999999999888888877776631100000 00000122333344444433333344 788999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhchhhHHHHHH
Q psy16658 241 FAPEVKGSATGIAVALNWISAFIVTLCFVFLV--------KNLGSAATFWIFS 285 (318)
Q Consensus 241 ~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~ 285 (318)
+|+++|+++.++.....+.+..+++.+.+.+. +..||+..|++..
T Consensus 146 ~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 146 ATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 99999999999999988888888777776653 4678998887643
No 190
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.07 E-value=6.8e-08 Score=82.20 Aligned_cols=140 Identities=20% Similarity=0.225 Sum_probs=105.5
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
+|.++.|++.+....+....+..++.|.++||+||||.-+...++.+++++ +-..++++.++++|++-|++.+..+.+-
T Consensus 64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~F 142 (354)
T PF05631_consen 64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAF 142 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999998885 5566899999999999999999988887
Q ss_pred chhh-hhccC----chhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCC--eehhhhh
Q psy16658 112 PMFI-GEIAE----SSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGR--RILLLLS 183 (318)
Q Consensus 112 ~~~i-~~~~~----~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~ 183 (318)
.++. .|.-. ++..+..++ ... ..+++..+...+++-+++|+.+. +.....+
T Consensus 143 EsW~V~Eh~~~g~~~~~L~~tF~---------------------~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a 201 (354)
T PF05631_consen 143 ESWMVHEHNKRGFPQEWLSDTFS---------------------LATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAA 201 (354)
T ss_pred HHHHHHHHHHcCCChHHHHHHHH---------------------HHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHH
Confidence 7765 44321 111111111 233 34566777777788888888764 5555555
Q ss_pred hHHHHHHHHH
Q psy16658 184 DFVMALCLGV 193 (318)
Q Consensus 184 ~~~~~~~~~~ 193 (318)
.....++.++
T Consensus 202 ~~~l~~~~~~ 211 (354)
T PF05631_consen 202 IVLLAVAAVL 211 (354)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 191
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.07 E-value=3.9e-09 Score=92.65 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=99.4
Q ss_pred HhHHhHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHhhcc-----CCeehh-hhhhHHHHHHHHHHHHhhhhccCCC
Q psy16658 133 SAIIPMFIGEIAESSI-RGISAIIVGIVQFIMTALSVVLVDKA-----GRRILL-LLSDFVMALCLGVLGFYFYMMEDGK 205 (318)
Q Consensus 133 ~~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (318)
....|.+.+|..-+.. -|..... .+...+ .++.|.+.||+ ||||.+ ..+.+..+++...+.+...
T Consensus 8 ~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~------ 79 (356)
T TIGR00901 8 GNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP------ 79 (356)
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc------
Confidence 3455555555432211 1333322 333333 88999999997 788864 5555555555444433210
Q ss_pred CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------h
Q psy16658 206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--------S 277 (318)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~ 277 (318)
....+.......+.+...... .+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.++.+ |
T Consensus 80 --~~~l~~l~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w 156 (356)
T TIGR00901 80 --STDLPLLAGLAFLIAFFSATQ-DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW 156 (356)
T ss_pred --chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 111222233333333333332 33334778899999999999999999999999999999999998888 9
Q ss_pred hhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 278 AATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+..|++.+....+..+...+..||+
T Consensus 157 r~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999888777666555444444554
No 192
>KOG2615|consensus
Probab=99.07 E-value=3.3e-10 Score=95.98 Aligned_cols=111 Identities=17% Similarity=0.210 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|++-..+++...+.++..|.++||+|||.++..|++..++...+.+.. . ....++..=+.+..+-...
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----------~-~F~afv~aR~l~Gi~kgnl 138 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----------R-NFAAFVLARFLGGIFKGNL 138 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHhhhhccCch
Confidence 688889999999999999999999999999999999988887777662 2 2222333233344444444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~ 273 (318)
+..- ++++|+.++++|+.+++..+....+|-.+||.++|++..
T Consensus 139 ~v~r-AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 139 SVIR-AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHH-HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 4444 889999999999999999999999999999999999987
No 193
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.06 E-value=3.3e-09 Score=107.10 Aligned_cols=115 Identities=15% Similarity=0.217 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
+...++.+...+++++.|+++||+|||+++..+.++..+..++..+.... ...+..++..++.+.+.+...
T Consensus 51 ~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~- 121 (1146)
T PRK08633 51 IVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL--------GWFWLAFAVTFLLGAQSAIYS- 121 (1146)
T ss_pred HHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH--------ccHHHHHHHHHHHHHHHHhhc-
Confidence 66777888889999999999999999999988776655544443332111 123444555555555555444
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
+...+++.|.+|+++|++++|+......+|..+++.+.+.+.+.
T Consensus 122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44448899999999999999999999999999999999999876
No 194
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.05 E-value=1.1e-09 Score=97.13 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=112.2
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l 93 (318)
....+|.+.+| .|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.....++.+..+.+++.+.+
T Consensus 224 ~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 296 (382)
T PRK11128 224 YYGFSAIYWQA-------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWL 296 (382)
T ss_pred HHHHHHHHHHH-------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34445666555 78899999999999999999999999999999999999999999999888888889999999
Q ss_pred HHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhh
Q psy16658 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVD 172 (318)
Q Consensus 94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d 172 (318)
++..++.|++.+...+....++.+. +++++++..+ ... ...+++..++..++|++.|
T Consensus 297 ~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQA---------------------LYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888888886 5566666655 343 3345666889999999999
Q ss_pred ccCCe
Q psy16658 173 KAGRR 177 (318)
Q Consensus 173 ~~g~~ 177 (318)
++|..
T Consensus 355 ~~g~~ 359 (382)
T PRK11128 355 HLGAG 359 (382)
T ss_pred hccHH
Confidence 99863
No 195
>PRK09952 shikimate transporter; Provisional
Probab=99.05 E-value=2.4e-09 Score=96.72 Aligned_cols=132 Identities=12% Similarity=0.084 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658 155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234 (318)
Q Consensus 155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
+..+...+++++.|+++||+|||+.+..+....+++..+..+........ ....+..+..-.+.+.+.+..++...
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~G~~~g~~~~~~~- 147 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG---WWAPVLLVTLRAIQGFAVGGEWGGAA- 147 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHH---HHHHHHHHHHHHHHHhhhcccHHHHH-
Confidence 34466778889999999999999999999888888877776631100000 00001223333445555554444444
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhchhhHHHHHHHHHHH
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK--------NLGSAATFWIFSVICFV 290 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~ 290 (318)
.++.|..|+++|+...+..+....+|..+++.+...+.. ..||+..|.+.+...++
T Consensus 148 ~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 148 LLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 788899999999999999888888888888777666543 46899888876655433
No 196
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.03 E-value=5.3e-10 Score=99.05 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=105.1
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH--HHHHHH--hh
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW--VLILFA--KN 89 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~~--~s 89 (318)
....+|.+.++. ++.++.+.+...+...++..++.++.|++.||+|||+.+.....+..+.. ....+. ++
T Consensus 238 ~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (394)
T TIGR00883 238 ITTYLPTYLTQT------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGS 311 (394)
T ss_pred HHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 344566666432 78889999999999999999999999999999999998775554443333 222222 46
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHH
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSV 168 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g 168 (318)
.+.+....++.|++.+...+...+++.|.+|+++|+++.+ ... ....++..++.++.|
T Consensus 312 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------------------~~~~~~~~~g~~~~p~~~g 370 (394)
T TIGR00883 312 FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGAS---------------------LAYNLAGAIFGGFAPYIAA 370 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEee---------------------ehhHhHHHHHhhHHHHHHH
Confidence 6777778889999988899999999999999999988776 433 334456668889999
Q ss_pred HHhhccCCe
Q psy16658 169 VLVDKAGRR 177 (318)
Q Consensus 169 ~l~d~~g~~ 177 (318)
++.|+.|..
T Consensus 371 ~l~~~~g~~ 379 (394)
T TIGR00883 371 ALVAMTGDW 379 (394)
T ss_pred HHHHHcCcc
Confidence 999999843
No 197
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.98 E-value=1.9e-08 Score=88.29 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|++.||+|||+.+..+.....++.... .. .+.+..+....+.+.+.+...
T Consensus 38 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~-----------~~~~~l~~~~~~~g~g~~~~~ 105 (355)
T TIGR00896 38 GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA-----------PGTALLFAGTALIGVGIAIIN 105 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh-----------ccHHHHHHHHHHHHHHHHHHh
Confidence 688889999999999999999999999999988876665554433 11 123333444444555544433
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFV 290 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~ 290 (318)
.... ....|.+| ++|+++.+..+....+|..+++.+.+.+.++.+ |+..+...+...++
T Consensus 106 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~ 166 (355)
T TIGR00896 106 VLLP-SLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL 166 (355)
T ss_pred ccch-HHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3333 55667775 579999999999999999999999998887753 77777666554443
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.98 E-value=9.1e-09 Score=103.82 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
+...+..+...+.+++.|+++||++||+++................... ..+.+.+++..++.+.+.+.. .
T Consensus 56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~l~~~~~l~gi~~a~~-~ 126 (1140)
T PRK06814 56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--------LNSVPLLFAALFLMGIHSALF-G 126 (1140)
T ss_pred HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHhh-c
Confidence 5666777888899999999999999999764322221111111111100 122445555555666555554 4
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
|...+.+.|.+|+++|+.++|+.++...+|..++|.+.|.+.+..+|+..|...+...++ .++.....+++
T Consensus 127 p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 197 (1140)
T PRK06814 127 PIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT 197 (1140)
T ss_pred hHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence 455588899999999999999999999999999999999999999998777333333333 33343444443
No 199
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.97 E-value=6.2e-09 Score=95.46 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658 156 VGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
.........+++|+++|| +|||+.+..+..+..++..++.+. ....+.......+.+.+.+...+ ...
T Consensus 66 ~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~----------~~~~~~l~~~~~l~gig~g~~~~-~~~ 134 (500)
T PRK09584 66 FSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS----------GHDAGIVYMGMATIAVGNGLFKA-NPS 134 (500)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhhhcccC-CHH
Confidence 333334445689999999 599999999988888776666542 01122223333444444444333 333
Q ss_pred eeeccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q psy16658 235 MMVGELFAPEV--KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFV 290 (318)
Q Consensus 235 ~~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 290 (318)
++..|.+|++. |..+.++.+...++|..++|.+.+++.|+.||++.|.+.+....+
T Consensus 135 ~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 135 SLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 67788887543 456788889999999999999999999999999999887654444
No 200
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.96 E-value=1.8e-08 Score=90.05 Aligned_cols=132 Identities=19% Similarity=0.283 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhcc-----CCee-hhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658 161 FIMTALSVVLVDKA-----GRRI-LLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234 (318)
Q Consensus 161 ~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
.+..++.|+++||+ |||| .+..+....+++...+.+.. .....+.......+.+..... ..+...
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--------~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 116 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--------PHAALWPLAGLAVLVAFLSAS-QDIVFD 116 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC--------ccchHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 57789999999999 7765 67777777766666554421 011223333333333433333 344444
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-LGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+++.|..|+++|+++.++......+|..+++.+.+.+.+. .||+..|++.+....+..+.. ...+|+
T Consensus 117 al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~ 184 (402)
T PRK11902 117 AYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEP 184 (402)
T ss_pred HHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 8889999999999999999999999999999999999886 489999998887766554433 334544
No 201
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.96 E-value=4.7e-09 Score=96.14 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=111.5
Q ss_pred HHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q psy16658 135 IIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLP 214 (318)
Q Consensus 135 ~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (318)
++|.+..|+...++..++.....+...+..++.|+++|.+|||..++.+.++..++.++.... ++....
T Consensus 66 ~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA-----------~~~~~~ 134 (599)
T PF06609_consen 66 ILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA-----------QNMNTF 134 (599)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC-----------CcHHHH
Confidence 345555777777777888999999999999999999999999999999999988888877663 334455
Q ss_pred HHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Q psy16658 215 LLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLF 294 (318)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 294 (318)
+....+.+.+.+... +....++|+.|.+.|..+.++...........++.+...+..+.+||+.|++.+....+..++
T Consensus 135 iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 666666666544332 233457899999999887776665544445567777776666678999999988877666555
Q ss_pred hhee
Q psy16658 295 TFVL 298 (318)
Q Consensus 295 ~~~~ 298 (318)
.+++
T Consensus 213 ~~~f 216 (599)
T PF06609_consen 213 IFFF 216 (599)
T ss_pred HHHH
Confidence 4433
No 202
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.7e-08 Score=85.79 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=110.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHh
Q psy16658 148 IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL 227 (318)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (318)
+.+++..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+..... +.+..+....+.+...+
T Consensus 50 q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~--------~~~~ll~~gll~G~~Ga- 120 (417)
T COG2223 50 QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP--------STWQLLVIGLLLGLAGA- 120 (417)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC--------chHHHHHHHHHHhcccc-
Confidence 447999999999999999999999999999999999888888777777642211 11333444444433322
Q ss_pred cccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 228 GYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG---SAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.+. ....++++.+|||++|.++|++. .+|+|..+...+.+.+....| |+....++.....+..+..++..++
T Consensus 121 sFa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 121 SFA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred eeh-cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233 33377889999999999999999 999999999999999999988 8888888887777777777665543
No 203
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.90 E-value=1.1e-08 Score=96.11 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCC-------------------------
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDG------------------------- 204 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 204 (318)
|++...+.++..++.++.+++.||.+|||.+.++.++++++.++..++.+....-
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~ 150 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLT 150 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCC
Confidence 5788888999999999999999999999999999999999998887753221000
Q ss_pred ------------CCCc--c-cchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658 205 ------------KDVS--S-ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV 269 (318)
Q Consensus 205 ------------~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g 269 (318)
.+.. . .....++.-++.+.+.+. ..+...+++.|.+|+++|+...|+.+....+|..+++.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~-~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg 229 (633)
T TIGR00805 151 QALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP-IFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGS 229 (633)
T ss_pred CCccccccccccccccCCCceehhhHHHHHHHhccCCc-chhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0000 0 112233344444444433 33444489999999999999999999999999999999999
Q ss_pred HHHHHh----------------------chhhHHHHHHHHHHHHHHHhh
Q psy16658 270 FLVKNL----------------------GSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 270 ~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~ 296 (318)
.+.+.+ +|+..|.+.+.+.++..+..+
T Consensus 230 ~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 230 FCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred HHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988643 155567776666666554443
No 204
>KOG0255|consensus
Probab=98.90 E-value=2.7e-08 Score=92.00 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
.+...++.++..+|.++.|.++||+|||+++..+.++..++.+...+. .+.+..++.-++.+++.....
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a-----------~~~~~~~~~Rfl~G~~~~~~~ 189 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA-----------PNYWMFLIFRFLSGFFGSGPL 189 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHHhhccchh
Confidence 478888999999999999999999999999999999988888766662 444455555555555555444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
. ..+.+..|.+++++|+.+..+ ......++..++...+++.. +|++.+++.........++ ++..+|.
T Consensus 190 ~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 190 T-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred H-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 4 444888999999999999999 88888999999999998887 6888888877777766554 3434343
No 205
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.89 E-value=5.8e-08 Score=88.98 Aligned_cols=131 Identities=16% Similarity=0.252 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcc-----CCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccccee
Q psy16658 162 IMTALSVVLVDKA-----GRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWM 235 (318)
Q Consensus 162 ~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (318)
.+.++.+.++||+ ||||. +..+.+..+++...+.+.. +....+.......+.+.+.+. ..+...+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~--------~~~~l~~l~~~~~l~~~~~a~-~~i~~~a 130 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE--------PGTQLRWLAALAVVIAFCSAS-QDIVFDA 130 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5789999999999 98885 5566666666655554421 012233334344444444443 3333448
Q ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 236 MVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 236 ~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
+..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|++.+...++..+..+. .||+
T Consensus 131 ~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~ 197 (491)
T PRK11010 131 WKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEP 197 (491)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 88899999999999999999999999999999999998 469999999988777666554443 4554
No 206
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.88 E-value=3.2e-08 Score=87.68 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=99.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
.|.+...+..+..+..+..|+++||+|.|+.+..+.+..++...+.++. ...+.+.+.-++.+.+.+..
T Consensus 64 ~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa-----------~Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 64 TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG-----------TSVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999999999999999999999998888888888773 23445566667777777766
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFW 282 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 282 (318)
+ +.. .++.+.+|+++|++++|+.+....+|.++++++.+. ....||+....
T Consensus 133 ~-A~~-syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~ 183 (511)
T TIGR00806 133 I-AYS-SYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYST 183 (511)
T ss_pred H-HHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHH
Confidence 6 444 888899999999999999999999999999999999 55678765443
No 207
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.88 E-value=7.4e-08 Score=86.89 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh----ccCCeehhhhh-hHHHHHHHHHHHHhhhhcc---CCCCCcccc---hhHHHHH
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVD----KAGRRILLLLS-DFVMALCLGVLGFYFYMME---DGKDVSSIS---FLPLLSV 218 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~ 218 (318)
+....+..+.+.+.+++.|+++| |+||||.+... .....+++.++.+...... ...+..... +..+...
T Consensus 42 ~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~ 121 (477)
T TIGR01301 42 SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGF 121 (477)
T ss_pred HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHH
Confidence 47788888999999999999999 59999988764 4444455454444221110 000000111 1222333
Q ss_pred HHHHHHHHhcccccceeeeccccchhhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------------chhhHH
Q psy16658 219 IFFIVMFSLGYGPIPWMMVGELFAPEVK--GSATGIAVALNWISAFIVTLCFVFL--VKNL-------------GSAATF 281 (318)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~~~~~~~g~l--~~~~-------------g~~~~~ 281 (318)
.+..........|.. +++.|..|+++| +.+.++.+...++|+.+++.+.+.. .+.. +.+..|
T Consensus 122 ~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F 200 (477)
T TIGR01301 122 WILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCF 200 (477)
T ss_pred HHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHH
Confidence 333444554555555 888999998865 5799999999999999999988865 2221 456788
Q ss_pred HHHHHHHHHHHHHhheeccCCC
Q psy16658 282 WIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.+.+.+..++.++..+..+|+.
T Consensus 201 ~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 201 LIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHeeeeeccC
Confidence 8888888888888888777754
No 208
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.87 E-value=9.9e-09 Score=91.30 Aligned_cols=141 Identities=11% Similarity=-0.017 Sum_probs=105.3
Q ss_pred ccccccccccccccccCcCCCCChhHHHHHHHHH-HHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH------H
Q psy16658 15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAI-GAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF------A 87 (318)
Q Consensus 15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~ 87 (318)
....|.+.+| .|.++++.|++...... ...++.++.|++.||+|+||.+..+..+.+...+.... .
T Consensus 228 ~~~~~~~l~~-------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 300 (390)
T TIGR02718 228 FGLSKLYLVD-------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA 300 (390)
T ss_pred HHHhhHHHHh-------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 3345666666 79999999999888764 66677899999999999999988877665333332221 1
Q ss_pred hhHHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q psy16658 88 KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTAL 166 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 166 (318)
++.+.+.....+.++..+...+...+...+..++ +++++.++ .......++..++..+
T Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~---------------------~~~~~~~lg~~~g~~~ 359 (390)
T TIGR02718 301 PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVT---------------------AVQSTRDLGELIASSI 359 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 2333444555666777787878888888788776 78888888 7888889999999999
Q ss_pred HHHHhhccCCeehhhhh
Q psy16658 167 SVVLVDKAGRRILLLLS 183 (318)
Q Consensus 167 ~g~l~d~~g~~~~~~~~ 183 (318)
.|.+.|+.|.+.....+
T Consensus 360 ~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 360 AGYLTDRFGYAGGFLSG 376 (390)
T ss_pred HHHHHHHHccHHHHHHH
Confidence 99999999876555443
No 209
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.86 E-value=4.3e-08 Score=88.76 Aligned_cols=126 Identities=23% Similarity=0.291 Sum_probs=112.8
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcch--hHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHH
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRK--PVILAFCIPFIISWVLILF--------AKNVLMLFAARFIAG 101 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~s~~~l~~~r~l~G 101 (318)
+|++..+...+.-...+...++.+++|++.||+|.| ++++.+...+.+..+...+ .++-+.+.+.-++.|
T Consensus 312 lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G 391 (477)
T PF11700_consen 312 LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIG 391 (477)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 8988888888666666555 567788888999999
Q ss_pred hhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCee
Q psy16658 102 VATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRI 178 (318)
Q Consensus 102 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~ 178 (318)
+..|..++..-++.+|..|+++.+..+| +.....-....+|.++.|.+.|..|..|
T Consensus 392 ~~~G~~qs~sRs~~~~LiP~g~e~efFg---------------------ly~i~gk~ss~lGPll~g~i~~~tg~~r 447 (477)
T PF11700_consen 392 LFMGGIQSASRSLFSRLIPPGREAEFFG---------------------LYAITGKASSWLGPLLFGLITDATGSQR 447 (477)
T ss_pred HHhhhHHHHHHHHHHHhCCCchhhHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence 9999999999999999999999998888 7777777889999999999999998443
No 210
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.83 E-value=5e-10 Score=102.67 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=3.0
Q ss_pred ccccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy16658 3 GAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV 82 (318)
Q Consensus 3 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~ 82 (318)
..+..+...++....++.+.+. |+++.++.|++.+.+-++..+..++..++.+|-.|-|.+-.+.++.+++++
T Consensus 11 ~~~~q~~~~g~~~~~lttiErR-------F~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 11 LGLFQMMVSGYVNSSLTTIERR-------FGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 3444566777778888888888 999999999999999999999999999999999888899999999999999
Q ss_pred HHHHH------------h--------------------------------------hHHHHHHHHHHHHhhccccccccc
Q psy16658 83 LILFA------------K--------------------------------------NVLMLFAARFIAGVATGGLSAIIP 112 (318)
Q Consensus 83 ~~~~~------------~--------------------------------------s~~~l~~~r~l~G~~~g~~~~~~~ 112 (318)
++++= . -+..+++++++.|+|....++...
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 88760 0 036678899999999999999999
Q ss_pred hhhhhccCchhhhHHHH
Q psy16658 113 MFIGEIAESSIRAGVAT 129 (318)
Q Consensus 113 ~~i~~~~~~~~r~~~~~ 129 (318)
+|+-|.+++++-+...|
T Consensus 164 tYiDDnv~~~~splYiG 180 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIG 180 (539)
T ss_dssp -----------------
T ss_pred eeeccccccccCccchh
Confidence 99999999999887777
No 211
>PRK10133 L-fucose transporter; Provisional
Probab=98.82 E-value=1.4e-07 Score=85.16 Aligned_cols=114 Identities=15% Similarity=0.024 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+....+.++..++.+..|++.||+|||+++..+..+..++.++...... ..+.+..+....+.+.+.+...
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~--------a~~~~~ll~~r~l~G~g~g~~~ 135 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------IMNYTLFLVGLFIIAAGLGCLE 135 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999888888866532110 1234445556666666666655
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV 272 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~ 272 (318)
.... .++.|..|+++|...++..+....+|..+++.+.+.+.
T Consensus 136 ~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 136 TAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred hhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444 56667777777767899999999999999998877654
No 212
>KOG0254|consensus
Probab=98.82 E-value=4.3e-08 Score=90.38 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+++.....++..++.++.|+++|++|||+.+..+.+...++.++.... .+.+...+.-++.+.+.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a-----------~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA-----------PSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHhccchhhhh
Confidence 488899999999999999999999999999999999999998888874 345666777778887777777
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL--GSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
...+ .+.+|..|++.||...+..+....+|..++ .+.+...++. +|+..+.+....+++..+. ..+.||+
T Consensus 161 ~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 161 VLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 7677 999999999999999999999988887777 5555555543 7987777776666666665 5556654
No 213
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.82 E-value=3.1e-08 Score=88.36 Aligned_cols=133 Identities=12% Similarity=0.075 Sum_probs=104.7
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658 33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP 112 (318)
Q Consensus 33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 112 (318)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.++...+...+++.+.+++.+++.|++.........
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 329 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF 329 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999998888888878888999889999999988665555555
Q ss_pred hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658 113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186 (318)
Q Consensus 113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 186 (318)
.+..+..+++.++...+ . ......+++.++.++.|++.|..|.+..+....++
T Consensus 330 ~~~~~~~~~~~~at~~~---------------------~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~ 383 (396)
T TIGR00882 330 KYITSQFDVRLSATIYL---------------------IGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCI 383 (396)
T ss_pred HHHHHhCCcceEEEeeh---------------------HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHH
Confidence 56666666666554333 2 34567889999999999999999876655544333
No 214
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.80 E-value=1.4e-07 Score=84.76 Aligned_cols=242 Identities=15% Similarity=0.179 Sum_probs=150.0
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhc-----chhHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHh
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFG-----RKPVILAFCIPFIISWVLILFA----KNVLMLFAARFIAGV 102 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~r~l~G~ 102 (318)
+|+++++.....+...+...+ .++.|.++|.+. ||+-++++.++..++.+..+.. .+.....+.-++..+
T Consensus 20 l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~ 98 (433)
T PF03092_consen 20 LGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASF 98 (433)
T ss_pred cCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHH
Confidence 999999999999988888766 788999999873 4445666777776666655553 346666677788889
Q ss_pred hccccccccchhhhhccCchh--hhHHHH-----------------------------hhhHhHHhHHH--------HH-
Q psy16658 103 ATGGLSAIIPMFIGEIAESSI--RAGVAT-----------------------------GGLSAIIPMFI--------GE- 142 (318)
Q Consensus 103 ~~g~~~~~~~~~i~~~~~~~~--r~~~~~-----------------------------~~~~~~~p~~~--------~~- 142 (318)
|......+..+++.|...++. |+..-+ ..+...+|.+. +|
T Consensus 99 g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~ 178 (433)
T PF03092_consen 99 GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER 178 (433)
T ss_pred HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999985443 333332 11111111111 21
Q ss_pred -------Hh---hc--c-----cc-------------------------------------------------------h
Q psy16658 143 -------IA---ES--S-----IR-------------------------------------------------------G 150 (318)
Q Consensus 143 -------~~---~~--~-----~~-------------------------------------------------------g 150 (318)
.. ++ + .+ |
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~ 258 (433)
T PF03092_consen 179 KVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYG 258 (433)
T ss_pred cccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHH
Confidence 00 00 0 00 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
....+..++.+++..+..+...++..|+++....++..+..+.-.......+..-..+.. +..+.-..+........+-
T Consensus 259 ~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~m 337 (433)
T PF03092_consen 259 TLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEVIGMIAFM 337 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHH
Confidence 344445555566666666655566666666655444433332222211111110000111 2223334445555555566
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG 276 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 276 (318)
|.. ..++|+.|+..-|+..++..++.++|..++..+...+.+..+
T Consensus 338 P~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 338 PSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 666 677899999999999999999999999999999999887755
No 215
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.79 E-value=1.8e-08 Score=86.59 Aligned_cols=139 Identities=11% Similarity=0.019 Sum_probs=106.7
Q ss_pred ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy16658 15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF 94 (318)
Q Consensus 15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~ 94 (318)
...++.+.+| .+.+|.++++.++..+.+..+..++.++.+++.||+|+||++.++..+..++.++....++...+
T Consensus 160 ~~w~~~yl~~----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~- 234 (310)
T TIGR01272 160 GSFLVNFLSD----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM- 234 (310)
T ss_pred HHHHHHHHHh----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-
Confidence 3344555544 23378999999999999999999999999999999999999888888888777666655544333
Q ss_pred HHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16658 95 AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKA 174 (318)
Q Consensus 95 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~ 174 (318)
..-++.|++.+..+|...+...+..|++ .+++.+ . .....+++.+..++.|.++|+.
T Consensus 235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asa---------------------i-~~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 235 WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSG---------------------I-LCLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHH---------------------H-HHHHHhcchHHHHHHHHHHHhc
Confidence 3555789999999999999999988764 333333 3 3456677888888999999999
Q ss_pred CCeehhh
Q psy16658 175 GRRILLL 181 (318)
Q Consensus 175 g~~~~~~ 181 (318)
|.+..+.
T Consensus 292 g~~~a~~ 298 (310)
T TIGR01272 292 GIQLAFA 298 (310)
T ss_pred cchHHHH
Confidence 8665543
No 216
>KOG2816|consensus
Probab=98.76 E-value=4.6e-07 Score=81.43 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=146.6
Q ss_pred HHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--hccccccccchhhhhccCch
Q psy16658 45 LIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGV--ATGGLSAIIPMFIGEIAESS 122 (318)
Q Consensus 45 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~--~~g~~~~~~~~~i~~~~~~~ 122 (318)
...+...+..+..|.++||+|||..+........+......+.. ||.++ +.++ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 44678889999999999999999999999888888777777666 44444 3333 23455778899999999999
Q ss_pred hhhHHHH------hhhHhHHhHHH-------------------------------HH----Hhhc--c------cc----
Q psy16658 123 IRAGVAT------GGLSAIIPMFI-------------------------------GE----IAES--S------IR---- 149 (318)
Q Consensus 123 ~r~~~~~------~~~~~~~p~~~-------------------------------~~----~~~~--~------~~---- 149 (318)
+|....+ .....+.|... +| .+++ + .+
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~ 224 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSS 224 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccch
Confidence 9998888 12222333322 11 0110 0 00
Q ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHHHH-HHhhc
Q psy16658 150 -------------------------------------------------------GISAIIVGIVQFIMTALSV-VLVDK 173 (318)
Q Consensus 150 -------------------------------------------------------g~~~~~~~~~~~~~~~~~g-~l~d~ 173 (318)
+......+..+.+++.+.. .+...
T Consensus 225 ~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~ 304 (463)
T KOG2816|consen 225 HVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI 304 (463)
T ss_pred hhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777778777666 67777
Q ss_pred cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHH
Q psy16658 174 AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIA 253 (318)
Q Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 253 (318)
++.|+....+.....+......+. ...|......... .......|...+..+...+++++|++.++.
T Consensus 305 l~~~~~i~lGl~~~~~~~~~~af~-----------~~~w~~~~~~v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~i 371 (463)
T KOG2816|consen 305 LGEKRLISLGLLSEFLQLLLFAFA-----------TETWMMFAAGVVV--ALAGIVFPAIRAFASILVSPEEQGKVFGII 371 (463)
T ss_pred HhhhhHhhHHHHHHHHHHHHHHHh-----------ccchhhhHHHHHH--HhhcchhHHHHhHHHhhcccccccchhhHH
Confidence 888888888877777777777763 2233322222222 222223344447777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16658 254 VALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 254 ~~~~~~g~~~~~~~~g~l~~~ 274 (318)
..+..+.+.++|.+.+.+...
T Consensus 372 s~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 372 SGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred HHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999988654
No 217
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.73 E-value=5.9e-08 Score=87.60 Aligned_cols=120 Identities=17% Similarity=0.328 Sum_probs=98.5
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhhccccccccch
Q psy16658 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-KNVLMLFAARFIAGVATGGLSAIIPM 113 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~g~~~~~~~~ 113 (318)
+..+.+++.+...++..++.+++++++||+|||+++..+..+..++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 334 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA 334 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999999999988888887777665 45677777888899999999999999
Q ss_pred hhhhccC-------chhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658 114 FIGEIAE-------SSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG 175 (318)
Q Consensus 114 ~i~~~~~-------~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g 175 (318)
+++|..| ++++|...+ .......++..++..+.|.+.|..|
T Consensus 335 ~~~~~~~~~~~~~~~~~~G~~~~---------------------~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 335 LVADTVDYGEWKTGVRAEGLVYS---------------------VRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHhhhhhhhhhhcCccchHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999876 334555555 6667778888888888888888766
No 218
>KOG0569|consensus
Probab=98.70 E-value=1.1e-07 Score=85.05 Aligned_cols=144 Identities=17% Similarity=0.136 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 149 RGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
|+....++.+++++|++..++++||+|||..+..+.+....+.++....... .........-++.+...+..
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~--------~~~e~li~GR~i~Gl~~gl~ 133 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA--------PSFEMLILGRLIVGLACGLS 133 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHhHHH
Confidence 3588889999999999999999999999999888887777776666654221 23445566666677677776
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHH-hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF-VFLVKN-LGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~-g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
....+ .++.|..|++.||....+......+|..++..+. ..+... ..|+..+......+++.. +.+.+.||+
T Consensus 134 ~~~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PES 207 (485)
T KOG0569|consen 134 TGLVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPES 207 (485)
T ss_pred HHHHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence 67677 8999999999999988888888888888874443 333322 236555555544444443 344456664
No 219
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.70 E-value=9.8e-08 Score=82.55 Aligned_cols=128 Identities=20% Similarity=0.330 Sum_probs=114.8
Q ss_pred CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658 31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
++|++..+...+.....+...++++++|++.||+|.|+++..+.++..+.++..-+...-..+.+.-.+.|...|..+..
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~ 361 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQAS 361 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHH
Confidence 49999999999999999999999999999999999999999999999999888888777677777778899999999999
Q ss_pred cchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCeeh
Q psy16658 111 IPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRIL 179 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 179 (318)
+-++..+.+|++|-++.+| +.....-.....+.+..+.+.|..+.-|.
T Consensus 362 SRSy~~~lvp~~k~~~fFg---------------------lyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 362 SRSYLARLVPKGKEGRFFG---------------------LYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHHHHHhCCCccccceee---------------------hhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999888887 77777778888899999999999886443
No 220
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.64 E-value=7.7e-07 Score=73.19 Aligned_cols=115 Identities=19% Similarity=0.202 Sum_probs=96.3
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHhhc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-------KNVLMLFAARFIAGVAT 104 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~r~l~G~~~ 104 (318)
+|+|.+|...+...-.+|..+ +++.|.+.||+|+|.++.++.+...+|......+ .++|.+.+..++.|.+.
T Consensus 32 l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~ 110 (250)
T PF06813_consen 32 LGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSS 110 (250)
T ss_pred hCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccH
Confidence 999999999999999999887 5889999999999999999999999999888764 46788888888988888
Q ss_pred cccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy16658 105 GGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVV 169 (318)
Q Consensus 105 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 169 (318)
+....+......+.+|+ +||.+.+ +.....++.+.+.+.+...
T Consensus 111 ~~~~ta~lvt~~~NFP~-~RG~vvg---------------------ilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 111 CWFNTASLVTCVRNFPR-SRGTVVG---------------------ILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred HHhhhHHHHHHHHhCcc-ccCceeh---------------------hhhHHHHhHHHHHHHHHHH
Confidence 87778877777888984 7998888 6666677776665444433
No 221
>PTZ00207 hypothetical protein; Provisional
Probab=98.63 E-value=5.2e-07 Score=83.32 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecccc
Q psy16658 162 IMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELF 241 (318)
Q Consensus 162 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (318)
...+..|++.||+|+|+++.++.+...++.++.++..... ...+.+.+.+...+.+.+.+....... ..+.+.+
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~-----i~~s~~~l~l~r~l~G~G~~~~~~~~~-~~i~~~F 149 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV-----IEGSVVRLSVYNGLMTLGCMLFDLGAV-VTVLSVF 149 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence 4566789999999999999999999999888777631110 012234444444455555443333333 4556778
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
| ++||++.|+......+|..+.+.+...+.+ .+++..+++.+.+..+..++.+.+.+
T Consensus 150 p-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 150 P-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhhee
Confidence 6 679999999999999998764444444443 34667777777777766666655543
No 222
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.63 E-value=4.7e-08 Score=65.39 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=75.5
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (318)
..|++-..+.|++|.+++| .++|.++.|++.+...+|+.++.+...++.++..+++.+..+.+...+..+.++
T Consensus 3 amGigRFayTplLP~M~~~-------~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 3 AMGIGRFAYTPLLPLMQAD-------GGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred chhhHHHHHHhHhHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999 899999999999999999999999999999998889999999999999999999
Q ss_pred HHhhHHHHH
Q psy16658 86 FAKNVLMLF 94 (318)
Q Consensus 86 ~~~s~~~l~ 94 (318)
+.++.+.+.
T Consensus 76 ~~~~~~~w~ 84 (85)
T PF06779_consen 76 LTHSFWLWS 84 (85)
T ss_pred HHhchHHHh
Confidence 999887653
No 223
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.62 E-value=2.3e-07 Score=82.33 Aligned_cols=149 Identities=18% Similarity=0.225 Sum_probs=118.8
Q ss_pred cccccccccccccccccccccccccCcC-CCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEP-VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+.+...+......+.+.+| .| .+.+..+.+.+...+.=...-...+++..|+|.|+++.++.+.+++=..+.
T Consensus 218 l~~~~~~~~~~f~~~yl~~-------~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~ 290 (400)
T PF03825_consen 218 LIGISHAAYYTFFSIYLQE-------LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLY 290 (400)
T ss_pred HHHHHHHHHHHHHHHHHHH-------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666 56 677778888888888888888999999999999999999999999988888
Q ss_pred HHH-hhHHHHH----HHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHH-HHHH
Q psy16658 85 LFA-KNVLMLF----AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAI-IVGI 158 (318)
Q Consensus 85 ~~~-~s~~~l~----~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~-~~~~ 158 (318)
+.. ++.+... +...++|+..+....+...++.+..|++.|+++-+ +... ..++
T Consensus 291 a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~---------------------l~~~~~~Gl 349 (400)
T PF03825_consen 291 AYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQG---------------------LYSALSFGL 349 (400)
T ss_pred HHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHH---------------------HHHHHHhhH
Confidence 877 4544333 34567999999999999999999999999988777 5444 4689
Q ss_pred HHHHHHHHHHHHhhccCCeehhhh
Q psy16658 159 VQFIMTALSVVLVDKAGRRILLLL 182 (318)
Q Consensus 159 ~~~~~~~~~g~l~d~~g~~~~~~~ 182 (318)
+..+++.++|++.|++|.+.....
T Consensus 350 g~~iG~~igG~l~~~~g~~~~~~~ 373 (400)
T PF03825_consen 350 GGAIGSLIGGWLYDAFGARGMFDW 373 (400)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhH
Confidence 999999999999999998865543
No 224
>KOG2533|consensus
Probab=98.60 E-value=2.5e-07 Score=83.71 Aligned_cols=143 Identities=17% Similarity=0.090 Sum_probs=112.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|...+++.++.+++.+.++.+.||++-.+.+....+...+..++-... .+.+..++.-++.+.+.+.++
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~-----------~s~~~~ialr~llGl~es~~w 152 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV-----------HSFPGLIALRFLLGLFESGGW 152 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHhcccc
Confidence 588899999999999999999999996665554433333332222221 234455667777777877777
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK------NLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
++.. .++...+.+++|+..+|+.++...+|+++++.+...+.+ ..||++.|.+-+++.++..++.++++|+..
T Consensus 153 P~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 153 PGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred hHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 7777 888999999999999999999999999999999988743 468999999999999999988888887654
Q ss_pred C
Q psy16658 304 G 304 (318)
Q Consensus 304 ~ 304 (318)
.
T Consensus 232 ~ 232 (495)
T KOG2533|consen 232 S 232 (495)
T ss_pred h
Confidence 3
No 225
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.60 E-value=6.6e-08 Score=85.35 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccc
Q psy16658 153 AIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGP 231 (318)
Q Consensus 153 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
...+...--...+++||++|| +|+|+++..+.+++.++.+.+.... ........+.+.+...+.+..-+.
T Consensus 67 ~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---------~~~~~gl~i~L~~I~iG~Gl~K~N 137 (498)
T COG3104 67 FSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---------VSGPGGLYIGLALIIVGTGLFKPN 137 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---------cccccHHHHHHHHHHhcccccccc
Confidence 333444444567889999999 6999999999999999999988742 012334455555555565555444
Q ss_pred cceeeeccccchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheec
Q psy16658 232 IPWMMVGELFAPE--VKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV 299 (318)
Q Consensus 232 ~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.. ..+.|.+|++ .|-.+.++.....++|+.++|.+.+.+.++.||+..|...++-...+.+..+...
T Consensus 138 iS-~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 138 IS-SLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred HH-HHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44 7778888643 2677888999999999999999999999999999999888777776666555543
No 226
>KOG2504|consensus
Probab=98.58 E-value=5.3e-07 Score=82.32 Aligned_cols=139 Identities=22% Similarity=0.253 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
++...+......+..++.+.+.||+|.|.+.+.+.++..+++++-.+. +..+...+..-.+.+.+.++.+
T Consensus 84 ~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~----------~~i~~l~lt~gvi~G~G~~~~~ 153 (509)
T KOG2504|consen 84 AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA----------TSLWQLYLTFGVIGGLGLGLIY 153 (509)
T ss_pred HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHhhccchhhh
Confidence 467777777778888999999999999999999999999998888774 2222334455566667777777
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
.|.. ..+...+ +++|+.++|+......+|..+-|.+...+.+..||+..+++.+.+.+-.......+.|
T Consensus 154 ~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 154 LPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred cchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777 6666555 5569999999999999999999999999999999999999999888776666666555
No 227
>KOG4332|consensus
Probab=98.55 E-value=2.2e-07 Score=75.51 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=135.0
Q ss_pred CcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658 31 NEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 31 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
+++..+.++|.+.-+.+-...+...+.|.++||-||||.-+.-++-+.+++ +.-.+++|-.++++|.+-|++.+..+++
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSa 144 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSA 144 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHH
Confidence 378888999998888888888889999999999999996554444444433 3445789999999999999999988887
Q ss_pred cchh-hhhccCchh-----hhHHHH----------hhhH--------------------------hH-HhHHH----HHH
Q psy16658 111 IPMF-IGEIAESSI-----RAGVAT----------GGLS--------------------------AI-IPMFI----GEI 143 (318)
Q Consensus 111 ~~~~-i~~~~~~~~-----r~~~~~----------~~~~--------------------------~~-~p~~~----~~~ 143 (318)
.-++ +.|..+++. ....++ .++. ++ ...++ ++.
T Consensus 145 FEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~~W~ENy 224 (454)
T KOG4332|consen 145 FESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILSSWSENY 224 (454)
T ss_pred HHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhhhhhcc
Confidence 7665 455542221 111111 0000 00 00001 000
Q ss_pred hh------------------------------------------------------cccchHHHHHHHHHHHHHHHHHHH
Q psy16658 144 AE------------------------------------------------------SSIRGISAIIVGIVQFIMTALSVV 169 (318)
Q Consensus 144 ~~------------------------------------------------------~~~~g~~~~~~~~~~~~~~~~~g~ 169 (318)
.+ +...|.+..-+.++.++|+-+..+
T Consensus 225 gdps~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~R 304 (454)
T KOG4332|consen 225 GDPSENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASR 304 (454)
T ss_pred CChhhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHH
Confidence 00 000178888888888888888877
Q ss_pred HhhccCC--eehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhh
Q psy16658 170 LVDKAGR--RILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKG 247 (318)
Q Consensus 170 l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 247 (318)
+..|-.. ...+.+.+.+.+..+.+.......... ...+...+...+++-...+..++.+. -+-.+..|++.|+
T Consensus 305 l~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~----kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEears 379 (454)
T KOG4332|consen 305 LLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS----KESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARS 379 (454)
T ss_pred HHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC----cCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHh
Confidence 7666443 345555555555554444333221111 12233335666666666777666666 6667889999998
Q ss_pred hHHHHHH
Q psy16658 248 SATGIAV 254 (318)
Q Consensus 248 ~~~g~~~ 254 (318)
+.+.++.
T Consensus 380 timNfFR 386 (454)
T KOG4332|consen 380 TIMNFFR 386 (454)
T ss_pred hhhhhee
Confidence 7765543
No 228
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.52 E-value=1.4e-06 Score=78.53 Aligned_cols=147 Identities=16% Similarity=0.253 Sum_probs=111.9
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL 85 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~ 85 (318)
+............+.+.++. .+.+ ...+.+.....++..++.+++++++||+|+||++..+..+.+++.+...
T Consensus 236 ~~~~~~~~~~~~~~y~~~~v------l~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 236 LQWLAFALMNTFLPYYFTYV------LGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred HHHhhhhhhhhHHHHHHHHH------hcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH
Confidence 33445555566666666664 4444 6778888899999999999999999999999999999999999999999
Q ss_pred HHh--hHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccch----HHHHHHHHH
Q psy16658 86 FAK--NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRG----ISAIIVGIV 159 (318)
Q Consensus 86 ~~~--s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g----~~~~~~~~~ 159 (318)
+.+ +.+.+++.-++.|++.+...+...++++|..+.+|+. ..+++.| ......-++
T Consensus 309 ~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~------------------tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 309 FLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWK------------------TGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred HHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHh------------------cCCCchHHHHHhhhhhhHHH
Confidence 886 9999999999999999999999999999999865431 0011112 444444556
Q ss_pred HHHHHHHHHHHhhccCCe
Q psy16658 160 QFIMTALSVVLVDKAGRR 177 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~ 177 (318)
..++..+.+.+.+..|..
T Consensus 371 ~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 371 QGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHHHHHHHHHHHHhCcC
Confidence 666666667666666543
No 229
>KOG3098|consensus
Probab=98.52 E-value=1.1e-05 Score=71.96 Aligned_cols=86 Identities=15% Similarity=0.048 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCch
Q psy16658 43 GSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESS 122 (318)
Q Consensus 43 ~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 122 (318)
.++......+.+++.+.+.|+.|+|+.+.++......-....-+ +|-+.++.+-.+.|+|.+..+...-.+++|..++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888888999999999999999999999999988776654444 45566777888999999999999999999999999
Q ss_pred hhhHHHH
Q psy16658 123 IRAGVAT 129 (318)
Q Consensus 123 ~r~~~~~ 129 (318)
++.+..+
T Consensus 135 tie~Nis 141 (461)
T KOG3098|consen 135 TIERNIS 141 (461)
T ss_pred hHHHHHH
Confidence 9988877
No 230
>PRK09848 glucuronide transporter; Provisional
Probab=98.49 E-value=6e-07 Score=81.45 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=80.9
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVL 91 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~ 91 (318)
.....|.+.++. +|.++...++......++..++.++++++.||+|+|+++.++..+..++.+...+.+ +++
T Consensus 247 ~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 320 (448)
T PRK09848 247 VSASSLFYVRYV------LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLP 320 (448)
T ss_pred HhhhheeeEeee------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHH
Confidence 334456666553 666655555555555677888999999999999999999999998888887777654 667
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSI 123 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 123 (318)
.+.+..++.|+|.+...+...++.+|..|+++
T Consensus 321 ~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~ 352 (448)
T PRK09848 321 VALVALAIASIGQGVTMTVMWALEADTVEYGE 352 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 77777889999999999999999999988654
No 231
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.46 E-value=7.4e-07 Score=75.62 Aligned_cols=113 Identities=27% Similarity=0.459 Sum_probs=92.0
Q ss_pred cccccccccccccccccccccCcCCCC--ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDR--GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
......+..+.+..+ ++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+.....++.+...+.
T Consensus 17 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 17 DLGLLSPALPLLLST-------LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred hcchHHHHHHHHHHH-------cCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 334444555666665 44444 578999999999999999999999999999988888887666666777777
Q ss_pred hh--HHHHHHHHHHHHhhccccccccchhhhhccCc-hhhhHHHH
Q psy16658 88 KN--VLMLFAARFIAGVATGGLSAIIPMFIGEIAES-SIRAGVAT 129 (318)
Q Consensus 88 ~s--~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-~~r~~~~~ 129 (318)
.+ .+.+++.|+.+|++.+...+...+++.|+.|+ ++|+...+
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVG 134 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 76 89999999999999999999999999999998 66776666
No 232
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.39 E-value=4.5e-06 Score=71.02 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=122.8
Q ss_pred ccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy16658 15 SPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAKNVLML 93 (318)
Q Consensus 15 ~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~s~~~l 93 (318)
...+|.+..| .|+|..+.|+..+...+.....++....+++|. ++|+.......+..++...+.+.+.-..+
T Consensus 228 ~~WLP~ili~-------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~ 300 (395)
T COG2807 228 IGWLPAILID-------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPI 300 (395)
T ss_pred HHHHHHHHHH-------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3456888888 899999999999999999999999999999964 67778888888888888888777654333
Q ss_pred HHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDK 173 (318)
Q Consensus 94 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 173 (318)
.- -++.|+|.|..+|.....+.+..++.+..-..+ |....+..+....+..+.|++-|.
T Consensus 301 lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LS--------------------gmaQg~GYllAa~GP~l~G~lhDa 359 (395)
T COG2807 301 LW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALS--------------------GMAQGVGYLLAAFGPWLFGFLHDA 359 (395)
T ss_pred HH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHH--------------------HHhhhhhHHHHhhhhhhHhHHHHh
Confidence 32 489999999999999999999998777765555 466777777888889999999999
Q ss_pred cCCeehhhhhhHHHHHHHHHHHH
Q psy16658 174 AGRRILLLLSDFVMALCLGVLGF 196 (318)
Q Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~ 196 (318)
.|.-...........+.+...++
T Consensus 360 ~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 360 TGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred cCChHHHHHHHHHHHHHHHHHHh
Confidence 99877666555555555554444
No 233
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.35 E-value=3.8e-09 Score=95.80 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+.......++..+|+++.|+++||+|||+.+..+..+..++.++..+.... .+.+.....-.+.+.+.+...
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY--------NNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc--------ccccccccccccccccccccc
Confidence 477888899999999999999999999999999988888887777663110 134444555566666666655
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN---LGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.... .++.|..|+++|+...++.+....+|..++..+.-...+. .+|+..+.......++..+ ...+.||+
T Consensus 121 ~~~~-~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 121 VVSP-IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 5555 8999999999999999999988888877777665444332 3477766665555544333 33445553
No 234
>KOG3626|consensus
Probab=98.34 E-value=6.6e-06 Score=76.70 Aligned_cols=118 Identities=13% Similarity=0.145 Sum_probs=101.9
Q ss_pred ccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 5 VTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 5 ~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+..++..++....+..+.+. |+++.++.|++.+.+-++..+...+..+.+-|.-|-|.+-++.++++++++++
T Consensus 107 ~~q~l~~~y~~s~IttiErR-------F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 107 FAQGLYVGYFNSVITTIERR-------FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHhhhhhhhhhhhhhhhh-------cCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence 34455556667777777777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHH--------------------h---------------------------h----H-HHHHHHHHHHHhhccccccccc
Q psy16658 85 LFA--------------------K---------------------------N----V-LMLFAARFIAGVATGGLSAIIP 112 (318)
Q Consensus 85 ~~~--------------------~---------------------------s----~-~~l~~~r~l~G~~~g~~~~~~~ 112 (318)
++= + . + ..++++.++.|+|....++...
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 861 0 0 2 3567789999999999999999
Q ss_pred hhhhhccCchhhhHHHH
Q psy16658 113 MFIGEIAESSIRAGVAT 129 (318)
Q Consensus 113 ~~i~~~~~~~~r~~~~~ 129 (318)
+|+-|...+++-...++
T Consensus 260 sYiDDnvk~~~SplYlg 276 (735)
T KOG3626|consen 260 SYIDDNVKKKNSPLYLG 276 (735)
T ss_pred ccccccccccCCcHHHH
Confidence 99999999999887777
No 235
>PRK09669 putative symporter YagG; Provisional
Probab=98.33 E-value=2.6e-06 Score=77.19 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----cCCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDK----AGRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM 224 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
|....+..+...+..++.|+++|| +||||. +..+....+++..++... + .. . .....++..+...+....
T Consensus 48 g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~--p-~~-~-~~~~~~~~~~~~~l~~~~ 122 (444)
T PRK09669 48 GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT--P-DF-G-ATGKIIYACVTYILLSLV 122 (444)
T ss_pred HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC--C-CC-C-cchHHHHHHHHHHHHHHH
Confidence 578888888999999999999999 666554 445555555555433221 1 11 0 011122333333344444
Q ss_pred HHhcccccceeeecccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hchhhHHHHHHHHHHHHHHHhh
Q psy16658 225 FSLGYGPIPWMMVGELF-APEVKGSATGIAVALNWISAFIVTLCFVFLVKN-------LGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.....|.. ++..|+. ++++|++..+.......+|..+++.+...+... .+|+..+.+.+++..+..+..+
T Consensus 123 ~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~ 201 (444)
T PRK09669 123 YTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCF 201 (444)
T ss_pred HHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444444444 6777876 567799999999888888888887766555543 3455566666666666555555
Q ss_pred eeccCC
Q psy16658 297 VLVPET 302 (318)
Q Consensus 297 ~~~~~~ 302 (318)
...+|+
T Consensus 202 ~~~~e~ 207 (444)
T PRK09669 202 FMTKER 207 (444)
T ss_pred CCeEEe
Confidence 544443
No 236
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.29 E-value=1.1e-05 Score=73.74 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh----ccCCe-ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVD----KAGRR-ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM 224 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d----~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
|.+..+..+...+..++.|+++| |+||| +.+..+...+++++.++... +.. . .....++..+...++..+
T Consensus 45 g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~---p~~-~-~~~~~~~~~~~~~l~~~~ 119 (473)
T PRK10429 45 GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA---HLF-E-GTAQYVFVCVTYILWGMT 119 (473)
T ss_pred HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC---CCC-C-ccHHHHHHHHHHHHHHHH
Confidence 47778888899999999999999 55885 45555665555555444221 110 0 011122233333444455
Q ss_pred HHhcccccceeeecccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhh
Q psy16658 225 FSLGYGPIPWMMVGELF-APEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.....|.. ++..|+. ++++|.+..+.-....++++.+.+.+...+.+.. ++.....+.+++..+..+..+
T Consensus 120 ~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~ 198 (473)
T PRK10429 120 YTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITL 198 (473)
T ss_pred HHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555445554 6778887 6888999999877777777666665554443322 344444455555555555555
Q ss_pred eeccCC
Q psy16658 297 VLVPET 302 (318)
Q Consensus 297 ~~~~~~ 302 (318)
+..+|+
T Consensus 199 ~~~~e~ 204 (473)
T PRK10429 199 RNVHEV 204 (473)
T ss_pred cCceec
Confidence 545543
No 237
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.28 E-value=3.9e-06 Score=76.45 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=109.9
Q ss_pred cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHH
Q psy16658 30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF----------AKNVLMLFAARFI 99 (318)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~s~~~l~~~r~l 99 (318)
+++|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++...... .++.+.+....++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 348999999999999999999999999999999999999999999999887755431 1344455666788
Q ss_pred HHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhccC
Q psy16658 100 AGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAG 175 (318)
Q Consensus 100 ~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g 175 (318)
.+++.+........++.+..|+++++...+ +.....+++..++..++|.+.|.+|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~a---------------------l~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFA---------------------LLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999988 8888899999999999999999988
No 238
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.27 E-value=3.9e-06 Score=73.85 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=108.8
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658 33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP 112 (318)
Q Consensus 33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 112 (318)
+.+....|.+.+...+.-.+...+..++.+|+|.|+.++++..++++=-++++++++.+.+.+.+.+.|+-.+.......
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehhhh
Q psy16658 113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILLLL 182 (318)
Q Consensus 113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 182 (318)
.++.+.+|+|...+... . .....+++..+.+.+.|++-|++|-+.+..+
T Consensus 335 kYI~~~fd~rlsAt~y~---------------------v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tyli 384 (412)
T PF01306_consen 335 KYITAHFDKRLSATLYL---------------------VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLI 384 (412)
T ss_dssp HHHHHHS-GGGHHHHHH---------------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHH---------------------HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHH
Confidence 99999999987654444 2 2345678888999999999999997765543
No 239
>KOG4686|consensus
Probab=98.23 E-value=3.4e-06 Score=69.38 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=107.0
Q ss_pred ccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHhh
Q psy16658 11 LAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFII-SWVLILFAKN 89 (318)
Q Consensus 11 ~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~-~~~~~~~~~s 89 (318)
.-+.....|.+........+++|+|+...+-+.+....-..+.+++.|.+.||+|++-..+.+..+..+ +-....+ +
T Consensus 274 v~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t 351 (459)
T KOG4686|consen 274 VLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--T 351 (459)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--h
Confidence 333444556555554455667999999999999999999999999999999999999877665544433 3332222 2
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVV 169 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 169 (318)
.+.=..+..+.|+..+.........++...|+++.|.+.+ .+..+..++-.+..++.|.
T Consensus 352 ~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTayg---------------------f~qsIqNLgla~i~Iiag~ 410 (459)
T KOG4686|consen 352 FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYG---------------------FIQSIQNLGLAFIPIIAGF 410 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHH---------------------HHHHHHhhhhhHHhhhhhe
Confidence 2222344566788777666667778888889999998888 8888889999999999999
Q ss_pred HhhccCCe
Q psy16658 170 LVDKAGRR 177 (318)
Q Consensus 170 l~d~~g~~ 177 (318)
+.|.-|..
T Consensus 411 i~d~~g~y 418 (459)
T KOG4686|consen 411 IADGDGSY 418 (459)
T ss_pred eecCCCch
Confidence 99987753
No 240
>KOG2816|consensus
Probab=98.23 E-value=1.5e-05 Score=71.84 Aligned_cols=138 Identities=24% Similarity=0.299 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccce
Q psy16658 155 IVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234 (318)
Q Consensus 155 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (318)
..++...+.++..|.++||+|||..+....+.+.+....+.+- .|+... ..-...++..... ...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-------------~~~~~~-~~~l~g~~~~~~s-~~~ 134 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-------------GYWFFL-LLGLSGGFSAIFS-VGF 134 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-------------HHHHhh-hcccccchhhhhh-hhh
Confidence 4467788889999999999999999887766666555555442 122222 1111112222222 333
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCCCH
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTL 307 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
++.+|...++.|....|+.+.....+..++|.+.+.+.+..|....+.+..+...+..+.....+||+.+++.
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~ 207 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKE 207 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccc
Confidence 8889999999999999999999999999999999999999998889999888888888888888887654443
No 241
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.23 E-value=8.2e-07 Score=58.95 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=50.7
Q ss_pred cccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHH
Q psy16658 10 GLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIP 76 (318)
Q Consensus 10 ~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~ 76 (318)
..+...|.+|.+.++ .|+|..|+|.+.++..+...++++++|.++||++++|.++.....
T Consensus 15 ~~g~~~Pfl~~~~~~-------~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQ-------LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 344556677777777 899999999999999999999999999999999999877665543
No 242
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.19 E-value=1.9e-05 Score=68.67 Aligned_cols=124 Identities=10% Similarity=0.074 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhccC-----Ceehh-hhhhHHHHHHHHHHHHhhhhccC---CCCCcccchh--HHHHHHHHHHHHHhc
Q psy16658 160 QFIMTALSVVLVDKAG-----RRILL-LLSDFVMALCLGVLGFYFYMMED---GKDVSSISFL--PLLSVIFFIVMFSLG 228 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~ 228 (318)
..+.++..|+.+|+.+ ||... ..+...+..+..+.......... ........+. ......+++.+....
T Consensus 27 ~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s 106 (403)
T PF03209_consen 27 VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHAS 106 (403)
T ss_pred HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHh
Confidence 4457899999999988 76554 44555566655555554444333 1111111222 222333344444444
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF 284 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 284 (318)
..+.. +++.|..|+|+|+++.++...+--+|..++..+.+.+.|.+......-+.
T Consensus 107 ~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~ 161 (403)
T PF03209_consen 107 GTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVI 161 (403)
T ss_pred HHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 44444 78899999999999999999999999999999999999887654433333
No 243
>PRK11462 putative transporter; Provisional
Probab=98.17 E-value=7.3e-05 Score=68.08 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=91.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc----cCCeeh-hhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHH
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDK----AGRRIL-LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVM 224 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
|.+..+.-+...+.-++.|+++|| +||||. +..+.+.++++..++... + .. + ......+..+...++..+
T Consensus 48 g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~--p-~~-s-~~~~~~y~~~~~~~~~~~ 122 (460)
T PRK11462 48 GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST--P-DL-S-MNGKMIYAAITYTLLTLL 122 (460)
T ss_pred HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC--C-CC-C-cchHHHHHHHHHHHHHHH
Confidence 477788888899999999999997 576654 445656666665544332 1 11 1 011122333344444555
Q ss_pred HHhcccccceeeeccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhh
Q psy16658 225 FSLGYGPIPWMMVGELFA-PEVKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.....|.. ++..|+.+ +++|++..+.......+|..+++.+...+.+.. +|.....+.+.+..++..+.+
T Consensus 123 ~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 123 YTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 555444444 66677765 788999999999999998888887776666544 344455555555555555554
Q ss_pred eeccCC
Q psy16658 297 VLVPET 302 (318)
Q Consensus 297 ~~~~~~ 302 (318)
...+|+
T Consensus 202 ~~~kE~ 207 (460)
T PRK11462 202 FTTKER 207 (460)
T ss_pred hcceec
Confidence 444443
No 244
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.15 E-value=5.9e-05 Score=65.30 Aligned_cols=139 Identities=16% Similarity=0.075 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
++....+..+..+..+..+++.+|+|+|+.+..+..++++++.++..... .......+....+.+.+.+..-
T Consensus 51 ~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~--------~~~y~~FL~~lFila~Gi~~Le 122 (422)
T COG0738 51 SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS--------SKSYGFFLVALFILASGIGLLE 122 (422)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHhhhHHHH
Confidence 47777888888899999999999999999999999999999988864311 1122223333344444443333
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hchhhHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN-------------------LGSAATFWIFSVICFV 290 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~g~~~~~~~~~~~~~~ 290 (318)
.... .++..+.|++..+.-+.+...++.+|..++|++.+.+..+ ..++..|...+...++
T Consensus 123 taaN-p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvl 201 (422)
T COG0738 123 TAAN-PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVL 201 (422)
T ss_pred hccc-hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3333 6667788888888899999999999999999999998872 1245566666666665
Q ss_pred HHHHhhe
Q psy16658 291 GTLFTFV 297 (318)
Q Consensus 291 ~~~~~~~ 297 (318)
..+....
T Consensus 202 l~v~~~~ 208 (422)
T COG0738 202 LAVLILL 208 (422)
T ss_pred HHHHHHh
Confidence 5554433
No 245
>KOG3762|consensus
Probab=98.15 E-value=2e-06 Score=76.64 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=125.9
Q ss_pred ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658 29 VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 29 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 108 (318)
.+|.+..+...|........+-++.-++.+++.+|+|+-+++.+++.+..+=.+..+..+|.|..+...+++|+..+..+
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIW 477 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHH
Confidence 45578888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH
Q psy16658 109 AIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA-IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM 187 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 187 (318)
.+..+|+++..||+.|..+-+ ++. .-.+++--+|++++|.+..|++.|....+..+.+
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~---------------------l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQG---------------------LLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHH---------------------HHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 999999999999999876666 222 2356677789999999999999998888766555
Q ss_pred HHHHHHHHH
Q psy16658 188 ALCLGVLGF 196 (318)
Q Consensus 188 ~~~~~~~~~ 196 (318)
.+.++....
T Consensus 537 l~~l~~~~~ 545 (618)
T KOG3762|consen 537 LVTLALFIS 545 (618)
T ss_pred HHHHHHHHH
Confidence 555544443
No 246
>KOG0253|consensus
Probab=98.14 E-value=1.5e-05 Score=68.01 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=67.0
Q ss_pred HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhh
Q psy16658 46 IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA 125 (318)
Q Consensus 46 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~ 125 (318)
..+.-.-+.++.+.+.||+|||+.+-.+.++..+..++...+.+-......-+..-+..++.+.+.+.|..|.+|.+.|+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRa 469 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRA 469 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhh
Confidence 34455678899999999999999999999999999988888765444444444444555666778899999999999999
Q ss_pred HHHH
Q psy16658 126 GVAT 129 (318)
Q Consensus 126 ~~~~ 129 (318)
...|
T Consensus 470 tgvG 473 (528)
T KOG0253|consen 470 TGVG 473 (528)
T ss_pred cchh
Confidence 8877
No 247
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.11 E-value=9.6e-05 Score=56.25 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=90.3
Q ss_pred CCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Q psy16658 33 PVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP 112 (318)
Q Consensus 33 ~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~ 112 (318)
++++..--.-.++......+++++.+.+.+++|.|+.++++.+...+-. +.-+-++.+.++.+-.+.|++.+..+++..
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~-~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg 111 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI-ASFFYPNSYTLYPASALLGFGAALLWTAQG 111 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHhhhhHHhhHhhh
Confidence 3444444455667777788888999999999999999999999987543 334567888999999999999999999999
Q ss_pred hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy16658 113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSV 168 (318)
Q Consensus 113 ~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 168 (318)
.++.+..++++|++..+ ....+.....++|.++.-
T Consensus 112 ~ylt~~s~~~~~~~~~~---------------------ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 112 TYLTSYSTEETIGRNTG---------------------IFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred HHHHHcCCHHHHhhHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999988776 666666666666655443
No 248
>KOG0252|consensus
Probab=98.10 E-value=9.5e-06 Score=71.11 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.......++.++|+++.|++.||+|||+++-..++++.++.++.+........ ...-+++.+.=.+.+++.+ +-.
T Consensus 88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~----~~~m~~L~~~R~~LGiGIG-GDY 162 (538)
T KOG0252|consen 88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSP----LGVMMTLCFFRFLLGIGIG-GDY 162 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCC----cchhhHHHHHHHHhhcccc-CCC
Confidence 67778889999999999999999999999999999999888855553221110 0111222222333333333 355
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL 271 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l 271 (318)
|+..+.++|....+.||+-.+...+++..|...|..+.-.+
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv 203 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV 203 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence 66668999999999999999888888877766655554443
No 249
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.00011 Score=65.73 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=108.5
Q ss_pred cccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHh--hHH
Q psy16658 14 TSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVL 91 (318)
Q Consensus 14 ~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--s~~ 91 (318)
.+..+..+.+.. +|.++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+.+ +.+
T Consensus 255 ~~s~~~yy~~y~------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~ 328 (467)
T COG2211 255 RGSIMVYYVTYV------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVV 328 (467)
T ss_pred HhhhhheeEEEE------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchH
Confidence 344445555554 677777888888888999899999999999999999999999999999999999876 788
Q ss_pred HHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHH----HHHHHHHHHHHH
Q psy16658 92 MLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAII----VGIVQFIMTALS 167 (318)
Q Consensus 92 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~ 167 (318)
.+++..++.+++.+...+...++++|..+.+|.. ..+...|..... .=++..++..+.
T Consensus 329 l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~------------------TG~R~eGi~~s~~tF~~K~g~ala~~~~ 390 (467)
T COG2211 329 LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWK------------------TGVRREGIVYSGMTFFRKLGLALAGFIP 390 (467)
T ss_pred HHHHHHHHHHHHhhccccccHHHhcchhhHHHHH------------------hCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999998765421 111122333333 335666777777
Q ss_pred HHHhhccCCee
Q psy16658 168 VVLVDKAGRRI 178 (318)
Q Consensus 168 g~l~d~~g~~~ 178 (318)
|+..+..|...
T Consensus 391 g~~L~~~Gyv~ 401 (467)
T COG2211 391 GWILGAIGYVP 401 (467)
T ss_pred HHHHHHcCCCC
Confidence 77777777543
No 250
>KOG2325|consensus
Probab=97.93 E-value=0.00015 Score=64.95 Aligned_cols=180 Identities=10% Similarity=0.100 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhccccccccchhhhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhh
Q psy16658 93 LFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVD 172 (318)
Q Consensus 93 l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d 172 (318)
..+..++.+...+...+....|..|.=|...- +--|+......++..++++..|+...
T Consensus 39 ~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~----------------------~ffG~viaa~slg~~i~~liF~~Ws~ 96 (488)
T KOG2325|consen 39 ALLNSFLVAVQFSIYLTSMWPYLQKLDPTATA----------------------TFFGLVIAASSLGHAIFSLIFGIWSN 96 (488)
T ss_pred HHHHHHHHhhhheEEEeecchhhhhcCCCCCc----------------------chhhHHHHHHHHHHHhcchhhccccc
Confidence 33445677888888888888888775433211 11258888899999999999999999
Q ss_pred ccCC-eehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHH
Q psy16658 173 KAGR-RILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATG 251 (318)
Q Consensus 173 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g 251 (318)
|.++ |+.++.+++++.++.++.....+... ...++.++.-.+.+++.+ .....-.|+++..-++.|.++.+
T Consensus 97 k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~------~~~y~mL~~R~l~Gvg~~--n~a~lR~Y~a~~s~~~dR~rA~a 168 (488)
T KOG2325|consen 97 KTGSVKKPLIVSFLIAIIGNLLYLALAYVPN------GVKYLMLVARILTGVGVG--NFAVLRAYIADASTVEDRPRAFA 168 (488)
T ss_pred ccCCcccCHHHHHHHHHHHHHHHHHHHhccc------chHHHHHHHHHHcCcCcc--cHHHHHHHHHhccCccchHHHHH
Confidence 9886 88888899999999888855433322 134444544444444432 23334467777666677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------hchhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 252 IAVALNWISAFIVTLCFVFLVKN-------------LGSAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 252 ~~~~~~~~g~~~~~~~~g~l~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
..+....+|..+||.+...+... .-+...-|+.+.+.+...++...+++|.
T Consensus 169 ~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 169 ATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred HhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 88887788888888766555421 1134456677777777777777766654
No 251
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.85 E-value=0.0001 Score=60.82 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.+.....++..+ .+..|.+.||+|.+.++.++.....++...+......... ....|.......+.+.+......
T Consensus 41 ~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~----~~~~~~~~~~~~l~~~s~~~~~t 115 (250)
T PF06813_consen 41 TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP----SLPVWLMCLFLFLGGNSSCWFNT 115 (250)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC----ccchHHHHHHHHHHcccHHHhhh
Confidence 344444555555 4788999999999999999999888888777654322111 12223333323322222222222
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
... ....+.+|+ +||++.|+.-....+++.+-..+...+.+.
T Consensus 116 a~l-vt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 116 ASL-VTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHH-HHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 222 233467875 699999999999999988877777666554
No 252
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.85 E-value=0.0005 Score=64.93 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
....+....-+..+++|+++|+ +|+++.+..+.++..++..++.+...+... ........+..+.+...+.+..-+
T Consensus 28 i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~---~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 28 LFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG---HPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc---cchHHHHHHHHHHHHHhhcccccc
Confidence 3334444455667788999997 799999999888888888777653211110 011112233444444444444444
Q ss_pred ccceeeeccccchh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhhHHHHHHHHHHHHHHHhhe
Q psy16658 231 PIPWMMVGELFAPE---VKGSATGIAVALNWISAFIVTLCFVFLVKNL-------GSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 231 ~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
... +...|.++++ .|-+...++....++|+.+++.+.+++.+.. +|...|.+.++..+++.++...
T Consensus 105 ~vs-af~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 105 CVS-AFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred Cch-hhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444 7777777643 4677888899999999999999999887553 5777887777777766655544
No 253
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.84 E-value=0.00034 Score=66.03 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=78.7
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHh
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKN--------VLMLFAARFIAGV 102 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s--------~~~l~~~r~l~G~ 102 (318)
++.++++...+...+....-+..+++|.++|+ +||+|.+.++.++..++..+.+++.. ....+++-.+..+
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 78888888888888888888999999999996 69999999999999999988877521 2335567788899
Q ss_pred hccccccccchhhhhccCchhh
Q psy16658 103 ATGGLSAIIPMFIGEIAESSIR 124 (318)
Q Consensus 103 ~~g~~~~~~~~~i~~~~~~~~r 124 (318)
|.|+.-|...+...|-++++++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~ 119 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQL 119 (654)
T ss_pred hccccccCchhhhHhhcCccch
Confidence 9999999999999999986544
No 254
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.76 E-value=0.013 Score=53.05 Aligned_cols=95 Identities=8% Similarity=0.103 Sum_probs=63.5
Q ss_pred CCChhHHHHHHHHHHHhhh-hhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH----h---------------------
Q psy16658 35 DRGQASLIGSLIAIGAIFG-ALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----K--------------------- 88 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~--------------------- 88 (318)
..+.+.++-+...+...+. .++.+++++|++|++++-+....+.....+.++. +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 4467888888888887777 8999999999999998877766666655555543 1
Q ss_pred ------hHHHHHHHHHHHHhhcccccc-ccchhhhhccCchhhhHHHH
Q psy16658 89 ------NVLMLFAARFIAGVATGGLSA-IIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 89 ------s~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~ 129 (318)
+.|...+..+...+-.....+ .-.++.+|.++.+|-.|..+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~ 168 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYA 168 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 123333344444444444444 55667777777777666655
No 255
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.67 E-value=0.002 Score=56.89 Aligned_cols=97 Identities=24% Similarity=0.367 Sum_probs=84.2
Q ss_pred cCCCCChhH-HHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658 32 EPVDRGQAS-LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 32 ~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
.|++.+|+. -+.-...-.+....++...+.|..+.|++++++.+...+...+.-+.++...+-+..+..|++.+. ..+
T Consensus 35 kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-eva 113 (412)
T PF01770_consen 35 KNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVA 113 (412)
T ss_pred cCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHH
Confidence 678888875 466677778888999999999999999999999999999999999999999999999999999765 567
Q ss_pred cchhhhhccCchhhhHHHH
Q psy16658 111 IPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~ 129 (318)
..+++-...|+++--++.+
T Consensus 114 y~sYiys~v~~~~yq~vts 132 (412)
T PF01770_consen 114 YYSYIYSVVDKEHYQKVTS 132 (412)
T ss_pred HHHHheeecCHHHHHHHHH
Confidence 7788888888888776666
No 256
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.67 E-value=0.0013 Score=56.59 Aligned_cols=144 Identities=20% Similarity=0.103 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+.+.........+...+.|.++||+|||+.-+..++...++++.--. .+.+.+++.=++.+......+
T Consensus 72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------------~~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 72 AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------------SNYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHH
Confidence 35666677778888889999999999999988888877777764322 233344444444444443333
Q ss_pred cccceeee----ccccchhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMV----GELFAPEVKGSATGIAVALN-WISAFIVTLCFVFLVKNLGS--AATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~----~~~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
..-..=++ ..-+|++..+...+...... .+-.+....+...+.|..+. ..+|.....+..++.++.....+|+
T Consensus 140 S~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 140 SAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 32210111 22356666666666555333 33344455555566666554 5677777777777777666666666
Q ss_pred CCC
Q psy16658 303 KGK 305 (318)
Q Consensus 303 ~~~ 305 (318)
.++
T Consensus 220 yg~ 222 (354)
T PF05631_consen 220 YGD 222 (354)
T ss_pred CCC
Confidence 543
No 257
>KOG0637|consensus
Probab=97.50 E-value=0.00039 Score=61.23 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=82.4
Q ss_pred cccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh----hhcchhHHHH-HHHHHHHHHHHHHHHhhH
Q psy16658 16 PVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD----KFGRKPVILA-FCIPFIISWVLILFAKNV 90 (318)
Q Consensus 16 ~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~~~s~ 90 (318)
..+|.+..+ .|++....+.+--+..+...+.+|+.|..+| |+||||.++. +..+..++.++..++.+.
T Consensus 53 sy~tPyl~~-------lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDi 125 (498)
T KOG0637|consen 53 SYLTPYLQS-------LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADI 125 (498)
T ss_pred ccccHHHHH-------cCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhh
Confidence 345566666 8889999999988999999999999999999 5899986555 566667777777776543
Q ss_pred -----------------HHHHHHHHHHHhhccccccccchhhhhccCchhhhH-HHH
Q psy16658 91 -----------------LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAG-VAT 129 (318)
Q Consensus 91 -----------------~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~-~~~ 129 (318)
..++++--+.-++....+..+-+++.|...++++.+ +++
T Consensus 126 g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans 182 (498)
T KOG0637|consen 126 GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANS 182 (498)
T ss_pred hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccch
Confidence 445556666777877888999999999997777666 444
No 258
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.49 E-value=0.016 Score=52.01 Aligned_cols=116 Identities=15% Similarity=0.128 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|..-....+.++.++++..++.+|+|..|.=..+...-..+..+............ +.......+....+.-.+. .++
T Consensus 296 gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~~l~~gi~~SR~GL-W~f 373 (432)
T PF06963_consen 296 GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAYLLLGGIALSRIGL-WSF 373 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHHHHHH-Hhh
Confidence 46667777888999999999999999887777666655555444443333222110 0111111222222222211 112
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLC 267 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 267 (318)
-.....+++|..|+++||+..|+-+..+++...+.-.+
T Consensus 374 DL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 374 DLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred hHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 22223667899999999999999999998877655433
No 259
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.42 E-value=0.00082 Score=60.67 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=83.5
Q ss_pred HHHHHHHHH--HHHHHHHHhhccC-----CeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658 154 IIVGIVQFI--MTALSVVLVDKAG-----RRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226 (318)
Q Consensus 154 ~~~~~~~~~--~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (318)
....+..++ ..++.|.++|-+. ||+.+.++.++..++...+...... ........+.+.+...+..
T Consensus 29 ~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~l~la~~g~a 101 (433)
T PF03092_consen 29 RLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS-------ESSAAIAVVLLFLASFGYA 101 (433)
T ss_pred HHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc-------cchhhhHHHHHHHHHHHHH
Confidence 333444443 4668899999863 4444555655554444444432110 1112222333333333333
Q ss_pred hcccccceeeecccc---chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 227 LGYGPIPWMMVGELF---APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 227 ~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
......- +...|.. |.+ |+...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+..+..+...+|
T Consensus 102 ~~DV~aD-a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 102 FADVAAD-ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHhhh-HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 3322222 4444554 444 88889999999999999999999999999998888888877766665555555554
No 260
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.39 E-value=0.0045 Score=56.06 Aligned_cols=110 Identities=8% Similarity=0.016 Sum_probs=76.7
Q ss_pred HHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcc--------------------cchhHHHHHHHHHH
Q psy16658 164 TALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSS--------------------ISFLPLLSVIFFIV 223 (318)
Q Consensus 164 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~ 223 (318)
.++.+++++|++|++.+..........+.++.+..++..+..+++. ..|....+....-.
T Consensus 61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~el 140 (472)
T TIGR00769 61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAEL 140 (472)
T ss_pred HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHH
Confidence 7788999999999999888777777777777776555433211100 01222222222222
Q ss_pred HHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 224 MFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~ 273 (318)
......+.+.|.+++|.+.+++..+-.++....+++|..+++.+...+.+
T Consensus 141 w~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 141 WGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334677899999999999999999999999999999999888764
No 261
>KOG2563|consensus
Probab=97.38 E-value=0.0019 Score=56.99 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccch--hHHHHHHHHHHHHHhc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISF--LPLLSVIFFIVMFSLG 228 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 228 (318)
+...++.+..++..+.+.|+.||+|-|.....+.....++..+=.....+.-+ +..+ +......+........
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~-----~~f~~~l~~~Gq~iaa~Aq~Fi 157 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP-----PLFRRPLTHTGQSIAAAAQPFI 157 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc-----ccchhhhhHHhHHHHHHhhhHh
Confidence 67788888999999999999999999999999888888777665553222111 1122 3333333333333222
Q ss_pred ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL 275 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 275 (318)
. .++.-...-.+|+++|+++..+..+.+.+|.+++..+.+.+..+.
T Consensus 158 m-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 158 L-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred h-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 1 222233445589999999999999999999999988888877543
No 262
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.30 E-value=0.0036 Score=47.72 Aligned_cols=109 Identities=17% Similarity=0.136 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.-..+......+.+++.+.+.+++|.|+.+.++.+...+....... ...+..+....+.+.+.+..+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------------~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------------PNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhhHHhhH
Confidence 4455556667777788889999999999999886666544443322 2245667777777787777777
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV 272 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~ 272 (318)
+.. .++.+..+++.|++..++...+...+..+|+.+.-.+.
T Consensus 109 aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 109 AQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 77888888999999999999999988888877665443
No 263
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.16 E-value=0.018 Score=51.61 Aligned_cols=148 Identities=9% Similarity=0.070 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHH----HHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHH
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVM----ALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (318)
.....-.+..++..+..|...||..|.+....+.+.. ++++.++............+............+.+....
T Consensus 42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 121 (432)
T PF06963_consen 42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER 121 (432)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence 3444555667777888899999999998876665443 222332222222111111001111111222222222222
Q ss_pred hcccccceeeecc----c--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhee
Q psy16658 227 LGYGPIPWMMVGE----L--FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298 (318)
Q Consensus 227 ~~~~~~~~~~~~~----~--~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
........+.-.| + -+++...+.++.+.-+-.+...++|.+.|.+.+..++.....+.++..+++...=+++
T Consensus 122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~ 199 (432)
T PF06963_consen 122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL 199 (432)
T ss_pred HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111111011111 1 1455567788888888888999999999999998888888887878777776655444
No 264
>KOG3574|consensus
Probab=97.15 E-value=0.0057 Score=52.89 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=67.5
Q ss_pred cccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhh-----hhcchhHHHH-HHHHHHH
Q psy16658 6 TIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIAD-----KFGRKPVILA-FCIPFII 79 (318)
Q Consensus 6 ~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~ 79 (318)
+.|.-.|... .+|.+.+. -|.|.++.+...-+ ...+ ---++|..+.| |+||||..++ +..+.+.
T Consensus 42 lQGiP~GL~~-~iP~lL~a-------k~vSyt~~a~fS~a-y~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~ 111 (510)
T KOG3574|consen 42 LQGIPLGLIG-AIPLLLQA-------KGVSYTSQAIFSFA-YWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGL 111 (510)
T ss_pred HcCCchhHhh-hhHHHhcC-------CCcchhhhhhhhhh-hhHH-HHHHHHHhhhHHHHHHhhccccceeeehHHHHHH
Confidence 3456666666 78888886 67777777764322 2222 23678889999 9999996544 4444443
Q ss_pred HHHHHHHH-----------hhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH
Q psy16658 80 SWVLILFA-----------KNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 80 ~~~~~~~~-----------~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~ 129 (318)
...+.+.. ++...+....++.-+..+..-.+...+.-....+++-|.+..
T Consensus 112 ~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST 172 (510)
T KOG3574|consen 112 FMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYAST 172 (510)
T ss_pred HHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhH
Confidence 33333331 233333334455555555555666666667777777765554
No 265
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.98 E-value=0.0038 Score=55.24 Aligned_cols=120 Identities=12% Similarity=-0.051 Sum_probs=80.3
Q ss_pred ehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchh---hhhhHHHHHH
Q psy16658 178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPE---VKGSATGIAV 254 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~ 254 (318)
|++..+.++..++.+++.....+.... +........+.+.+...+.+..-+.+. .+.+|.++++ +|.+....+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~--~~~~~~~~~~gL~lia~G~G~~K~ni~-~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLP--SGIQLGLFYIGLALIAVGTGGIKPNIS-PFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC--------CHHHHHHHHHHHHHHCCHHHHH-HHHHHCSSTTTTTHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhh--hhHHHHHHHHHHHHHHhccccccccHH-HHHHHHhcccchhhhhhhHHHHH
Confidence 456667777778877765544433321 122234555666666666666555555 7777887654 5677888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheecc
Q psy16658 255 ALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 255 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
...++|..++..+.+++.++.||...|.+.++..+++.+..+...+
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~ 124 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRK 124 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999998888777777666555433
No 266
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.72 E-value=0.031 Score=46.95 Aligned_cols=129 Identities=19% Similarity=0.136 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
+.......+....+.+..|.+.||.|||+.+..+......+......... ...+.........+...+. .
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~-~ 111 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN---------VGLALLLILRLLQGLGGGG-L 111 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHhhhHH-H
Confidence 36667777777778899999999999997777665543333222222110 1122223333323333332 3
Q ss_pred cccceeeeccccch-hhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH--hchhhHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAP-EVKGSATGIAVA-LNWISAFIVTLCFVFLVKN--LGSAATFWIFSVIC 288 (318)
Q Consensus 230 ~~~~~~~~~~~~p~-~~r~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~ 288 (318)
.+....+..|..|+ +.|+...+.... ....+..++|.+.+.+.+. .+|+..+.......
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 112 LPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33444777888887 678888888888 5777888888777766654 45665444443333
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.72 E-value=0.075 Score=47.04 Aligned_cols=82 Identities=11% Similarity=0.019 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhc
Q psy16658 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEI 118 (318)
Q Consensus 39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 118 (318)
.+.+.-+-.+...+..+.+.++.+|+.-+.=...+..++.++.+..+++++.+.=+++-.+.+++.|..-.....+.. .
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~ 139 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-F 139 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-h
Confidence 455666777788888889999999998666667777788889999999999998889999999988887766666544 4
Q ss_pred cCc
Q psy16658 119 AES 121 (318)
Q Consensus 119 ~~~ 121 (318)
+++
T Consensus 140 y~~ 142 (402)
T PF02487_consen 140 YGK 142 (402)
T ss_pred cCc
Confidence 444
No 268
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.28 E-value=0.09 Score=48.06 Aligned_cols=114 Identities=12% Similarity=0.069 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCccc--------------------chhHHHHHH
Q psy16658 160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI--------------------SFLPLLSVI 219 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 219 (318)
.++...+..++.||+++++............+.++++..++..+.-+++.. .|...+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 344566788999999999998888878888888887776654432111110 011111111
Q ss_pred HHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 220 FFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273 (318)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~ 273 (318)
..-.-.....+.+.|.+..|..+.++..+-.++.....++|..+++.+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222333567888999999999999999999999999999988888877
No 269
>KOG3626|consensus
Probab=95.90 E-value=0.06 Score=51.03 Aligned_cols=153 Identities=13% Similarity=0.120 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccC-------------CC-----------
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMED-------------GK----------- 205 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----------- 205 (318)
|++...+-+++.+...+..++..|.-|-|.+-.+.++++++.++..++-...+. ..
T Consensus 135 G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~ 214 (735)
T KOG3626|consen 135 GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNK 214 (735)
T ss_pred eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccC
Confidence 556666667777777788888889888899999999999988888876333211 00
Q ss_pred ----------------CCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658 206 ----------------DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV 269 (318)
Q Consensus 206 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g 269 (318)
+.+...|..++..-++.+.......++-..|+-|...+++.....|+..++..+|-++|=.+++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS 294 (735)
T KOG3626|consen 215 STNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGS 294 (735)
T ss_pred CccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHH
Confidence 0001122222222222222222233444589999998888899999999999999888888888
Q ss_pred HHHHH------------------hc-hhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 270 FLVKN------------------LG-SAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 270 ~l~~~------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
...+. .| |+..|++.+.+.++..+..++ +|++.
T Consensus 295 ~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~l 346 (735)
T KOG3626|consen 295 FCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKEL 346 (735)
T ss_pred HHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccC
Confidence 77642 12 556677777777776665554 44443
No 270
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.71 E-value=0.0016 Score=60.33 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=0.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC---C--------------------
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK---D-------------------- 206 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------- 206 (318)
|++...+-++..+..++..++.+|..|-|.+-.+.++++++.+++.++.+..+.-. .
T Consensus 41 G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~ 120 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSS 120 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccc
Confidence 68888888999999999999999988889999999999999999888654432100 0
Q ss_pred ------------CcccchhHHHHHHHHHHHHHhc---ccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 207 ------------VSSISFLPLLSVIFFIVMFSLG---YGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFL 271 (318)
Q Consensus 207 ------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l 271 (318)
.....+......++.....+.+ ..++-.+|+-|..+++..+...|+..+...+|-++|-.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~ 200 (539)
T PF03137_consen 121 QASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFC 200 (539)
T ss_dssp -------------------------------SSS----------------------------------------------
T ss_pred cccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHH
Confidence 0001111122222222222333 3334458999999999999999999999998888887777765
Q ss_pred H
Q psy16658 272 V 272 (318)
Q Consensus 272 ~ 272 (318)
.
T Consensus 201 L 201 (539)
T PF03137_consen 201 L 201 (539)
T ss_dssp -
T ss_pred H
Confidence 5
No 271
>KOG3810|consensus
Probab=95.68 E-value=0.031 Score=47.90 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=74.5
Q ss_pred cCCCCChhH-HHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccc
Q psy16658 32 EPVDRGQAS-LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 32 ~~~s~~~~g-~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
.+++..|.. -+.-...-.+.+.-.+.=.+.|..--|++++.-.+.....-...-+.++.+.+=+.-+..|...+ .-.+
T Consensus 36 ~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIA 114 (433)
T KOG3810|consen 36 KNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIA 114 (433)
T ss_pred CCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHh
Confidence 456655553 23334445566667777788999988998888777777777788888999999888999998755 4467
Q ss_pred cchhhhhccCchhhhHHHH
Q psy16658 111 IPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~ 129 (318)
-++++-+.++++++.++.+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~ 133 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTG 133 (433)
T ss_pred hhheeeeecCHHHHHHHHH
Confidence 8899999999999988888
No 272
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.23 E-value=0.42 Score=42.51 Aligned_cols=122 Identities=15% Similarity=0.080 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeecc
Q psy16658 160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGE 239 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (318)
....-+....+.|..+.|++++.+.+...+...++.+. ...+.+.+.-+..+...+. -...++++-.
T Consensus 54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~-----------~sv~~mq~~q~~yg~~~a~--evay~sYiys 120 (412)
T PF01770_consen 54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG-----------TSVLAMQLMQFFYGLATAA--EVAYYSYIYS 120 (412)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------CcHHHHHHHHHHHHHHHHH--HHHHHHHhee
Confidence 34445566788999999999998877777666666552 3333334444444443332 1122255555
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHH
Q psy16658 240 LFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLF 294 (318)
Q Consensus 240 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 294 (318)
..|+++--++.+...+..-+|..++..++..+....+ +.....+......++.++
T Consensus 121 ~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 121 VVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLI 177 (412)
T ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6788888889999999999999999988887776433 433434433333333333
No 273
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=94.31 E-value=2.3 Score=38.75 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=32.1
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
++-+.+.+|..-|+.+.+.|++.++|+-.-..+.=+++|.
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 6666777899999999999999999986666666666664
No 274
>KOG3098|consensus
Probab=94.13 E-value=0.57 Score=42.42 Aligned_cols=107 Identities=13% Similarity=0.010 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
....+......+..++.+.+.|+++.|..+.++..........+.. .+.+......++.+++.+..+.
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~------------~N~y~~yfssallG~Gaallw~ 121 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF------------PNSYYLYFSSALLGFGAALLWT 121 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh------------cchHHHHHHHHHhhhhHHheec
Confidence 3367777888889999999999999999999987766666655544 3356677888888888887666
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~ 270 (318)
... .++.|..+++.+.+..++...+...+..+|....-.
T Consensus 122 GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 122 GQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred ccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence 666 899999999999999999999999888888655433
No 275
>PF12832 MFS_1_like: MFS_1 like family
Probab=94.09 E-value=0.13 Score=34.05 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 183 (318)
|.+..+..+...++.++.|.++||.++++.....
T Consensus 38 Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 38 GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 7888999999999999999999999998877654
No 276
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=94.06 E-value=1.3 Score=40.08 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCc-------------cc--------chhHHHH
Q psy16658 159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVS-------------SI--------SFLPLLS 217 (318)
Q Consensus 159 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~~~~~~ 217 (318)
+.++..++..++.++..++++..........+++++++..++..+..++. .. .|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45566778889999999999988888888888888888776554322111 10 0222222
Q ss_pred HHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 218 VIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
....-.-.....+-+.|....|....++..+-.++.+...+++..++..+..++.++
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222112222223335667788999999999999999999999999999888888763
No 277
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.86 E-value=0.17 Score=44.69 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHhhccccccccchhhhhccCchh
Q psy16658 68 PVILAFCIPFIISWVLILFAK---------NVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSI 123 (318)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~---------s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~ 123 (318)
|++.++.++..+|.++..++. +.+.+.++..+.++|.|+.-|...++.+|-+++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 677888899999998866542 23578888999999999999999999999998773
No 278
>KOG1237|consensus
Probab=92.57 E-value=2.1 Score=40.23 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=71.1
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHhhH--------------------
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAKNV-------------------- 90 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~s~-------------------- 90 (318)
++.+.....-..+.+.-......+..++++|.| ||-+++.++.++..++..+..++...
T Consensus 68 ~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~ 147 (571)
T KOG1237|consen 68 LHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESP 147 (571)
T ss_pred hccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCc
Confidence 677777777777777777778889999999976 88889999999988886666554221
Q ss_pred -----HHHHHHHHHHHhhccccccccchhhhhccCc
Q psy16658 91 -----LMLFAARFIAGVATGGLSAIIPMFIGEIAES 121 (318)
Q Consensus 91 -----~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~ 121 (318)
..+....-+..+|.|+.-|...++-+|-+++
T Consensus 148 s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~ 183 (571)
T KOG1237|consen 148 SKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE 183 (571)
T ss_pred chHHHHHHHHHHHHheeccCCCCCcchhhcccccCc
Confidence 2455666778889999999999999999983
No 279
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=92.43 E-value=0.57 Score=41.63 Aligned_cols=132 Identities=15% Similarity=0.188 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccc
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYG 230 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
.....-.+...+..+...++.+|+..+.-...+..++.+++++..+. .+.+.-++...+.....+.+=.
T Consensus 63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~-----------~~v~~~l~Gv~las~ssg~GE~ 131 (402)
T PF02487_consen 63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS-----------PSVWVRLLGVVLASLSSGLGEV 131 (402)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec-----------cchhHHHHHHHHHhhhhhhhHH
Confidence 45566666777778888899999886655555555666666665552 2334445555555555444432
Q ss_pred ccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHhheecc
Q psy16658 231 PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLFTFVLVP 300 (318)
Q Consensus 231 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
... .+ ...+|+. ..+-..+....++.+|+...-.+.+ .| .+..+.....+..+..+..++.++
T Consensus 132 tfL-~l-t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 132 TFL-SL-THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred HHH-HH-HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222 23 2345542 3344444455566777766665655 44 455666655555444333343443
No 280
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=92.33 E-value=2.5 Score=38.61 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhh
Q psy16658 90 VLMLFAARFIAGVATGGLSAIIPMFIGE 117 (318)
Q Consensus 90 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~ 117 (318)
+..+++..++||+-.|......+-++.+
T Consensus 2 ~~lL~~LY~lQGiP~GL~~gsiPflL~~ 29 (544)
T PF13000_consen 2 IALLVLLYFLQGIPLGLAFGSIPFLLQS 29 (544)
T ss_pred eeHHHHHHHHcCcccccccccchhhhcc
Confidence 3467788899999888877666666655
No 281
>PRK03612 spermidine synthase; Provisional
Probab=91.57 E-value=1.8 Score=40.22 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHhh
Q psy16658 246 KGSATGIAVALNWISAFIVTLCFVFLVK-NLGSAATFWIFSVICFVGTLFTF 296 (318)
Q Consensus 246 r~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~~ 296 (318)
-+...|-.+....+|+.+|..+.+.+.- ..|......+.+.+.++..++..
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999888765 57765566666666555554443
No 282
>PRK03612 spermidine synthase; Provisional
Probab=90.85 E-value=4.7 Score=37.55 Aligned_cols=32 Identities=19% Similarity=0.031 Sum_probs=27.8
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADK 63 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr 63 (318)
+|-+..+.+.+.+++..+..+|+.+++++.++
T Consensus 45 ~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 45 LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 67777888999999999999999999988744
No 283
>KOG3097|consensus
Probab=90.01 E-value=12 Score=32.42 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=56.9
Q ss_pred HHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccC
Q psy16658 47 AIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAE 120 (318)
Q Consensus 47 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~ 120 (318)
......++.+.+.+.+++|.|+++.++...+... +..-+-+.|+.++..-...|.+.+..+..--+++++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 4445566666779999999999999888877542 233344788999999999999999999888888877654
No 284
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=88.95 E-value=2.7 Score=28.32 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=49.1
Q ss_pred HhHHhHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHh
Q psy16658 133 SAIIPMFIGEIAESS-IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFY 197 (318)
Q Consensus 133 ~~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 197 (318)
..++|...+|..-+. .-|++...+.++..+|.+...++.++.++++.+..+.+...+....+.+.
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543322 23689999999999999999999999888888888888888888777763
No 285
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=88.09 E-value=22 Score=32.89 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=32.5
Q ss_pred ccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Q psy16658 238 GELFA-PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIF 284 (318)
Q Consensus 238 ~~~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 284 (318)
.+.+| |+.+...+|-.+...++...+...+.+.+.++.||.....+.
T Consensus 308 k~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 308 KQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred HHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44444 444577777777777776666668888889999987655543
No 286
>KOG1237|consensus
Probab=87.82 E-value=4.8 Score=37.89 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCC---------Ccc--cchh-HHHHHHHHH
Q psy16658 156 VGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKD---------VSS--ISFL-PLLSVIFFI 222 (318)
Q Consensus 156 ~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--~~~~-~~~~~~~~~ 222 (318)
..-........+++++|. +||-+++.++.++...+..++..........+. ... .... .+....+..
T Consensus 82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 334445566788899997 578888888888887776666554433321110 001 1111 111111111
Q ss_pred H-HHHhcccccceeeeccccc---h-hhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHh
Q psy16658 223 V-MFSLGYGPIPWMMVGELFA---P-EVK--GSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFT 295 (318)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~p---~-~~r--~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 295 (318)
. ....+.-+....+-+|.++ + +.+ ..-...+....+.|..+...+.-+.-|+.+|...|.+..+...++.++.
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 1 1222333333366667776 2 222 3566777777888888888888888788889888888777666665554
Q ss_pred he
Q psy16658 296 FV 297 (318)
Q Consensus 296 ~~ 297 (318)
+.
T Consensus 242 ~~ 243 (571)
T KOG1237|consen 242 LP 243 (571)
T ss_pred Hc
Confidence 43
No 287
>KOG3574|consensus
Probab=81.56 E-value=19 Score=32.09 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhhccccc
Q psy16658 88 KNVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 88 ~s~~~l~~~r~l~G~~~g~~~ 108 (318)
+++..++....+||+-.|...
T Consensus 31 ~~illLl~LYllQGiP~GL~~ 51 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIPLGLIG 51 (510)
T ss_pred hhHHHHHHHHHHcCCchhHhh
Confidence 456667777788888777665
No 288
>KOG4332|consensus
Probab=80.86 E-value=9.8 Score=32.06 Aligned_cols=91 Identities=10% Similarity=0.088 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhcchh--HHHHHHHHHHHHHHHHHHH----h---hHHHHHHHHHHHHhhcccccc
Q psy16658 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKP--VILAFCIPFIISWVLILFA----K---NVLMLFAARFIAGVATGGLSA 109 (318)
Q Consensus 39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~~~~~~~~~~~~~~~~~~~----~---s~~~l~~~r~l~G~~~g~~~~ 109 (318)
-|.+.+.++++..+++-+..++..|-..|- .+.+..........+..+. | +...-+++.++.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 589999999999999999999988876653 3444444433333322221 1 222334555666677889999
Q ss_pred ccchhhhhccCchhhhHHHH
Q psy16658 110 IIPMFIGEIAESSIRAGVAT 129 (318)
Q Consensus 110 ~~~~~i~~~~~~~~r~~~~~ 129 (318)
..+.+=+++.|++.|...+.
T Consensus 364 SimkmRsqyIPEearstimN 383 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMN 383 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhh
Confidence 99999999999999987665
No 289
>KOG1479|consensus
Probab=80.46 E-value=43 Score=30.01 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy16658 209 SISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT 265 (318)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~ 265 (318)
+..++.+....+++...+-..+... .+..+..|++++-.+-.+....-..|-..|.
T Consensus 341 ~~~~~~~~l~~~lglsnGYltsl~m-~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 341 ESDGWFIFLMSLLGLSNGYLTSLIM-MYAPKQVKPSEKEAAGNLMVFFLVGGLALGS 396 (406)
T ss_pred cCchHHHHHHHHHHhccchHhhhee-hhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666555444333 6777778888765554444444444444444
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=79.82 E-value=41 Score=30.59 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhH
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDF 185 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 185 (318)
.......+.+.+..+..-.+..|+..|.-+..+.+
T Consensus 49 ~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 49 YYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 34445555566666666666677665444444433
No 291
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=79.68 E-value=34 Score=31.15 Aligned_cols=58 Identities=7% Similarity=-0.042 Sum_probs=40.2
Q ss_pred cchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy16658 210 ISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF 268 (318)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 268 (318)
+.+..++.+.+++...+....... .+..+..++++|-.+-.+....-.+|-..|..+.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m-~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSM-CLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777776665444433 5666778888888888888877777877777653
No 292
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.42 E-value=5.1 Score=28.00 Aligned_cols=53 Identities=21% Similarity=0.365 Sum_probs=35.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHH
Q psy16658 242 APEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG--SAATFWIFSVICFVGTLF 294 (318)
Q Consensus 242 p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~ 294 (318)
.++.++.+.++-...-.+++.+.....|++.|++- .+|.++++..+.+.+.++
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~AG~l 90 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVL 90 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34567888888888888888888889999999863 223444444444444333
No 293
>KOG1479|consensus
Probab=74.24 E-value=50 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHhcccccceeeeccccchhhh
Q psy16658 213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVK 246 (318)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 246 (318)
..+....+.+.+.+...+.+. ...+ .+|+|.-
T Consensus 119 vt~~~vv~~~~a~a~~qgs~~-G~a~-~~P~~yt 150 (406)
T KOG1479|consen 119 VTLIIVVLLNLANAVVQGSLY-GLAG-LFPSEYT 150 (406)
T ss_pred HHHHHHHHHhhhhhhhccchh-hhhh-cCCHHHH
Confidence 334444444444444344333 4543 4677753
No 294
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=73.96 E-value=48 Score=29.19 Aligned_cols=86 Identities=20% Similarity=0.144 Sum_probs=61.3
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH-----HHHHHH----hhHHHHHHHHHHHHh
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW-----VLILFA----KNVLMLFAARFIAGV 102 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~-----~~~~~~----~s~~~l~~~r~l~G~ 102 (318)
.|-.--|.+.+.+.|.....+++...-++.|.--.-+.+..-.++..++. +...|+ ++-+.+.+.-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 56677788999999999999999999988886555444333333332221 111233 456778888889999
Q ss_pred hccccccccchhhhh
Q psy16658 103 ATGGLSAIIPMFIGE 117 (318)
Q Consensus 103 ~~g~~~~~~~~~i~~ 117 (318)
-.|...|..+.++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 999999999888776
No 295
>KOG2601|consensus
Probab=65.72 E-value=54 Score=29.23 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=33.1
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q psy16658 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFV 290 (318)
Q Consensus 239 ~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 290 (318)
|--+++.....++.....-..-..+.|.+.|.+....+.+..-..+++...+
T Consensus 166 ~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~v 217 (503)
T KOG2601|consen 166 EGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALV 217 (503)
T ss_pred CCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHH
Confidence 3334444455556666677778899999999998876665544444444433
No 296
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=65.52 E-value=65 Score=25.37 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=33.0
Q ss_pred HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy16658 46 IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGV 102 (318)
Q Consensus 46 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 102 (318)
..+...+..++.-.+..|.+||..+.+...+.++-..+++ .+|...+.-++.|+
T Consensus 37 ~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G---~~~~~~~~~iv~gl 90 (186)
T PF09605_consen 37 PAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG---HGWPMLIVCIVGGL 90 (186)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 3444456666777788999999888776666655444333 23444444444444
No 297
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.01 E-value=32 Score=24.22 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHH
Q psy16658 38 QASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCI 75 (318)
Q Consensus 38 ~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~ 75 (318)
....-.+.-+++..+.....||+.||| |.++.-++..+
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~l 81 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFL 81 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 345556777888888888999999997 55655444333
No 298
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=63.48 E-value=96 Score=26.60 Aligned_cols=38 Identities=11% Similarity=0.105 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy16658 66 RKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVA 103 (318)
Q Consensus 66 rr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~ 103 (318)
|++....|+.+++++.++...+-.+.-..+..=+.+++
T Consensus 49 ~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~ 86 (300)
T PF05653_consen 49 RRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALS 86 (300)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhh
Confidence 45677888888888887666665554444444444443
No 299
>COG2119 Predicted membrane protein [Function unknown]
Probab=62.93 E-value=73 Score=25.01 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=36.0
Q ss_pred hhhHhHHhHHHHHHhhccc-------------ch---HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658 130 GGLSAIIPMFIGEIAESSI-------------RG---ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186 (318)
Q Consensus 130 ~~~~~~~p~~~~~~~~~~~-------------~g---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 186 (318)
..+....-.++.|..+|++ ++ -...-..+++.++...+.++++|+..|+....+.++
T Consensus 101 ~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aall 173 (190)
T COG2119 101 VFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALL 173 (190)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4455556666677665432 11 122334466777778888999999999888766443
No 300
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=62.37 E-value=91 Score=28.03 Aligned_cols=111 Identities=13% Similarity=-0.012 Sum_probs=66.7
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhccccccc
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF-AKNVLMLFAARFIAGVATGGLSAI 110 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~r~l~G~~~g~~~~~ 110 (318)
.|.++++.....+...+...+++++-.+-.-++|.|..+..+.....+......- ..++......-++.|+-.-... .
T Consensus 23 ~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~~~~~~~ga~~v~Gii~illg-~ 101 (406)
T TIGR03173 23 LGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGGGLGAIFGAVIVAGLFVILLA-P 101 (406)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-H
Confidence 6888888888888888888888888753333577777666554443333222221 2344444444455554322222 2
Q ss_pred cchhhhhccCchhhhHHHHhhhHhHHhHHHHHH
Q psy16658 111 IPMFIGEIAESSIRAGVATGGLSAIIPMFIGEI 143 (318)
Q Consensus 111 ~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~ 143 (318)
....+.+.+|+.-.+.....++....|..++..
T Consensus 102 ~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~ 134 (406)
T TIGR03173 102 FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWA 134 (406)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678888887666665556666667666554
No 301
>KOG0637|consensus
Probab=61.60 E-value=11 Score=34.16 Aligned_cols=82 Identities=18% Similarity=0.059 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhcc
Q psy16658 40 SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIA 119 (318)
Q Consensus 40 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~ 119 (318)
.|=..++.+...+.+....++.||+|-|+.+..+...+.++..+.++.++.+....-|-..|+-.+.........++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 44456677778899999999999999877777777778888888888888888888888888766666666666666654
Q ss_pred Cc
Q psy16658 120 ES 121 (318)
Q Consensus 120 ~~ 121 (318)
..
T Consensus 415 ~~ 416 (498)
T KOG0637|consen 415 IL 416 (498)
T ss_pred Hh
Confidence 43
No 302
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=59.65 E-value=89 Score=24.96 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCe
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRR 177 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~ 177 (318)
.......++-..|..+++.+.++.+.+
T Consensus 166 ~~~~~~i~~f~~Ga~~ga~l~~~~~~~ 192 (209)
T PF06912_consen 166 LRYLLIILSFFIGAILGALLYRRLGFW 192 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555566666777777777777754
No 303
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=58.87 E-value=93 Score=24.92 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=30.1
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICFVG 291 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~ 291 (318)
.|...... +-.++++|-+..--......+.-.+..+.+..+.+.+|-. ..+-+.+++.+..
T Consensus 21 ip~f~~lt-~~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ 82 (203)
T PF01914_consen 21 IPIFLSLT-KGMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFL 82 (203)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33332444 4445555544444444444444455555666667777632 3455555544443
No 304
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=57.62 E-value=1.3e+02 Score=26.85 Aligned_cols=119 Identities=12% Similarity=0.036 Sum_probs=65.2
Q ss_pred ccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH------HHhhH
Q psy16658 17 VLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLIL------FAKNV 90 (318)
Q Consensus 17 ~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------~~~s~ 90 (318)
+.|.+..+. .|. +.+...+.+...+...+++++-+. +.|.|-.+.-+.....+...... ...++
T Consensus 20 v~P~il~~~------~g~-~~~~~~li~at~l~sgi~Tllq~~---~~g~~lpl~~G~s~~~~~~~~~~~g~~~~~~~~~ 89 (389)
T PF00860_consen 20 VVPLILAAA------FGL-DADTAALISATFLVSGIATLLQGL---PAGHRLPLVPGPSFAFIFAFMIVIGMAESGGYGL 89 (389)
T ss_dssp HHHHTTTS------------------HHHHHHHHHHHHHHHHH---HTTT-----EEE-GGGHHHHHGGG-----HHHHH
T ss_pred HhHHHHhhc------ccc-cchhhHHHHHHHHHHHHHHHHHHh---cCCCceecccccchhhhhhhhcccccccchhhch
Confidence 346666653 466 555667778888888888888888 67878776666555544422222 23455
Q ss_pred HHHHHHHHHHHhhccccccccc-hhhhhccCchhhhHHHHhhhHhHHhHHHHHHhh
Q psy16658 91 LMLFAARFIAGVATGGLSAIIP-MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAE 145 (318)
Q Consensus 91 ~~l~~~r~l~G~~~g~~~~~~~-~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~ 145 (318)
......-++.|+-.-....... ..+.+++|+.-++.....++..+.|.-++....
T Consensus 90 ~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~ 145 (389)
T PF00860_consen 90 QAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGG 145 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccc
Confidence 5666666666665443333222 378899999999888888888888888766544
No 305
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=55.04 E-value=1.1e+02 Score=25.63 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.1
Q ss_pred eeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16658 235 MMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNL 275 (318)
Q Consensus 235 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 275 (318)
+.+.+.+|+++|-++.=+-.....+-..+.-....++.+..
T Consensus 39 ai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 39 AILASKLPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56667788888776644433334444455555555666653
No 306
>COG3619 Predicted membrane protein [Function unknown]
Probab=53.40 E-value=1.2e+02 Score=24.71 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 183 (318)
+..........+.|...++.+...+|.+......
T Consensus 171 ~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~ 204 (226)
T COG3619 171 WLIYLSLILSFIVGAICGALLTLFFGLKALWVVA 204 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666667777777777777777776554443
No 307
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=53.19 E-value=3.6 Score=35.36 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=1.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhcc-C-CCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMME-D-GKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
....+.++..+|+.+.++..-+..+++.+....+.-.+..-++...-+.+. + .+..-.+.++.++.+.++++..+...
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 456788889999998887532211333333222222221111111101101 0 01112344555666667776666544
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCF 268 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 268 (318)
+... .+..+..++++|..+-.+....-..|-..|..+.
T Consensus 267 tl~m-~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAM-MYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH-----------------------------------
T ss_pred hcee-eeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6667778888887777777777677766666543
No 308
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=52.92 E-value=1.9e+02 Score=26.78 Aligned_cols=54 Identities=13% Similarity=0.131 Sum_probs=41.3
Q ss_pred CCCChhHHHHHHHHH-HHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy16658 34 VDRGQASLIGSLIAI-GAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA 87 (318)
Q Consensus 34 ~s~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~ 87 (318)
..++.+.++-+..-+ ...+..++..++.+++.|.+++-+....+....+++++.
T Consensus 58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777766 566788899999999999999888777777766666653
No 309
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=51.16 E-value=62 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=22.5
Q ss_pred cceeeeccccchhhhhhHHHHHHHHHHHHHHH
Q psy16658 232 IPWMMVGELFAPEVKGSATGIAVALNWISAFI 263 (318)
Q Consensus 232 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~ 263 (318)
+.|..++...+++..|+..|+-.+-.+.+.+.
T Consensus 114 isYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 114 ISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred hhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 33345556677787899999888887776544
No 310
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=51.15 E-value=93 Score=26.09 Aligned_cols=32 Identities=9% Similarity=-0.093 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeehhhhh
Q psy16658 152 SAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183 (318)
Q Consensus 152 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 183 (318)
...++-.+..+|.+..|...+..-+||..+..
T Consensus 146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~ 177 (267)
T PF07672_consen 146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIHF 177 (267)
T ss_pred HHHHHHHHHhhhceeeccchhhhhhhhhHHHH
Confidence 33334444445555666665443344444433
No 311
>KOG3810|consensus
Probab=48.13 E-value=1.2e+02 Score=26.94 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=55.7
Q ss_pred HHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhh
Q psy16658 169 VLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGS 248 (318)
Q Consensus 169 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 248 (318)
.+.|....|++++.-.+.....-.++.+- ...+..-+.-...+... ..-...++++-+..+|+++-+
T Consensus 64 lLTD~lrYKPvivlq~ls~v~~w~~lv~g-----------~sV~~mQvlE~FyG~~t--AaEIAYysYIYs~Vd~~~Yqr 130 (433)
T KOG3810|consen 64 LLTDYLRYKPVVVLQALSGVPVWIMLVFG-----------PSVKAMQVLEFFYGPAT--AAEIAYYSYIYSKVDPEMYKR 130 (433)
T ss_pred HHhhhhhcceeeeeeccchhHHHHHHHhc-----------CCchheeeehhhcChHH--HHHHhhhheeeeecCHHHHHH
Confidence 46788888888776544434433333331 11111111112222111 112233477778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 249 ATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 249 ~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
+.|...+..-.|...+..+...+.+.
T Consensus 131 vt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 131 VTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred HHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 99999999888888888887777654
No 312
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=46.27 E-value=79 Score=24.88 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcch
Q psy16658 44 SLIAIGAIFGALPAGSIADKFGRK 67 (318)
Q Consensus 44 s~~~~~~~~~~~~~g~l~dr~Grr 67 (318)
.-|.+++.++..+.|+++||..+|
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~~~~ 112 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKIRKR 112 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcc
Confidence 346788889999999999999863
No 313
>COG4769 Predicted membrane protein [Function unknown]
Probab=45.70 E-value=36 Score=26.02 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=33.8
Q ss_pred HHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy16658 46 IAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGV 102 (318)
Q Consensus 46 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 102 (318)
+.+...+.+...-++..++|+|+.-.++... .-++.+|..++++.+++.+-
T Consensus 82 ~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 82 YSFAGAILSTLFMYFLYQFGPKYLSLLGISV------MGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeeehhh------HHHHHHhHHHHHHHHHHHhc
Confidence 3444455556666788899999875555433 33567788888888877653
No 314
>PRK11111 hypothetical protein; Provisional
Probab=45.61 E-value=1.6e+02 Score=23.80 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=29.9
Q ss_pred HhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHH
Q psy16658 226 SLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICFVG 291 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~ 291 (318)
-.+..|....++.+. ++++|-+..-.........-.+..+.+..+.+.+|.+ ..|-+.+++.+..
T Consensus 23 Pig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ 88 (214)
T PRK11111 23 PVGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVT 88 (214)
T ss_pred cchhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 333444443454444 4444443322222222333344555666667777743 3455555544433
No 315
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=43.24 E-value=99 Score=23.33 Aligned_cols=41 Identities=20% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 44 SLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 44 s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
.-|.+++.+...+.|++.||..+++..........++...+
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~~~~~~~~~~~~g~~ii 100 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSRSFLRLILAMLVGLLII 100 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 34678888889999999999888753333333333344333
No 316
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=42.47 E-value=2.6e+02 Score=25.27 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=66.9
Q ss_pred cCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccc--
Q psy16658 32 EPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSA-- 109 (318)
Q Consensus 32 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~-- 109 (318)
. .++++...+.+...+...+++++-+....+.-|-....-................++......-++.|+.......
T Consensus 33 ~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~~~~~~~~~~~~g~~i~~gl~~~ll~~~~ 111 (415)
T TIGR00801 33 P-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIAIGSGLGIPAIMGALIATGLVYTLLSLLI 111 (415)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 7888899999999999999999998877654222222222212211121122223444444444555544333222
Q ss_pred --ccchhhhhccCchhhhHHHHhhhHhHHhHHHHHH
Q psy16658 110 --IIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEI 143 (318)
Q Consensus 110 --~~~~~i~~~~~~~~r~~~~~~~~~~~~p~~~~~~ 143 (318)
....++.+.+|+.-.+.....++..+.+.-++..
T Consensus 112 ~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~ 147 (415)
T TIGR00801 112 KKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMA 147 (415)
T ss_pred HHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHh
Confidence 1234568889999888888878888888777655
No 317
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=39.24 E-value=1.1e+02 Score=20.05 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCch
Q psy16658 73 FCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESS 122 (318)
Q Consensus 73 ~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~ 122 (318)
+.+.+..|.+...+......+.++-++.-+-....+|.-..-=.+|.+++
T Consensus 21 ~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p~~W~~~~ 70 (76)
T PF06645_consen 21 AIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHPLKWLPPK 70 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhcCCcccCCCCC
Confidence 33333444444444444455555544444444444444443344444444
No 318
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=38.37 E-value=47 Score=23.35 Aligned_cols=48 Identities=10% Similarity=-0.066 Sum_probs=38.3
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+..|=+.+.|.=.+++.++.+++..|+.-+-+-=.++..+..++....
T Consensus 54 ~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI 101 (107)
T PF02694_consen 54 AAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAII 101 (107)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHhe
Confidence 557888899999999999999999999988777666666665555443
No 319
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=37.64 E-value=2e+02 Score=22.66 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=35.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy16658 45 LIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGV 102 (318)
Q Consensus 45 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~ 102 (318)
...+...++.++.=.+..|.+|+.++.+-.++.++... ...++|...+.-++.|+
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~---~~G~~~~~~~~~ii~gl 92 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFF---LMGMYWPMIISSIIGGL 92 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHH---HHcccHHHHHHHHHHHH
Confidence 34555566777777888999998887776666555333 33345555555555554
No 320
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=37.10 E-value=1.2e+02 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHh
Q psy16658 261 AFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFT 295 (318)
Q Consensus 261 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 295 (318)
..+.+++.|++.+.. +.++.++++..+++.++.
T Consensus 20 ~~iisfi~Gy~~q~~--~~~~~~~~~g~~~~~lv~ 52 (76)
T PF06645_consen 20 SAIISFIVGYITQSF--SYTFYIYGAGVVLTLLVV 52 (76)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhe
Confidence 345556777777764 345555555555554443
No 321
>PRK10995 inner membrane protein; Provisional
Probab=36.40 E-value=2.3e+02 Score=22.97 Aligned_cols=64 Identities=11% Similarity=0.142 Sum_probs=29.9
Q ss_pred HhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHH
Q psy16658 226 SLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICFV 290 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~ 290 (318)
..+..|....++.+. ++++|-+..--..........+..+.+..+.+.+|.. ..+-+.+++.+.
T Consensus 21 P~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~ 85 (221)
T PRK10995 21 PLTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVA 85 (221)
T ss_pred hhhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444443555444 4444433322223333333445555666667777743 345555554443
No 322
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=33.78 E-value=1.5e+02 Score=20.01 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHhhhhhhhhhhhhhhcc-------hhHHHHHHHHHHHHHHHHHHHhhH
Q psy16658 47 AIGAIFGALPAGSIADKFGR-------KPVILAFCIPFIISWVLILFAKNV 90 (318)
Q Consensus 47 ~~~~~~~~~~~g~l~dr~Gr-------r~~~~~~~~~~~~~~~~~~~~~s~ 90 (318)
..+.....+.++++.+|..+ ++.+..+.++...+.++++..+|.
T Consensus 28 ~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 28 WAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566677777777665 678888888888888888776654
No 323
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=32.49 E-value=76 Score=24.11 Aligned_cols=67 Identities=7% Similarity=0.097 Sum_probs=34.9
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHH
Q psy16658 59 SIADKFGRKPVILAFCIPFIISWVLILF-----------AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGV 127 (318)
Q Consensus 59 ~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----------~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~ 127 (318)
.++||.-||-.+..+.-. +++...... .+.+..++..-.+.|+| ...+.+.+++...++++.|..
T Consensus 56 ~Vs~RM~rRm~~~~GiP~-~lG~~~f~~~y~l~~~~~~dvP~~~~~~~S~~~Fg~g---llGisYGilSaSWD~~r~GSl 131 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIPT-ALGVAVFVVFYYLKSRQIVDVPPWAVLLVSLVFFGLG---LLGISYGILSASWDPEREGSL 131 (153)
T ss_pred HHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHH---HHhhhhhhcccccCCCCCCCc
Confidence 467787666554444322 222211111 24555566665555555 334455666666677766665
Q ss_pred HH
Q psy16658 128 AT 129 (318)
Q Consensus 128 ~~ 129 (318)
+|
T Consensus 132 lG 133 (153)
T PF11947_consen 132 LG 133 (153)
T ss_pred cc
Confidence 55
No 324
>PRK02237 hypothetical protein; Provisional
Probab=31.99 E-value=92 Score=22.02 Aligned_cols=48 Identities=8% Similarity=-0.116 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q psy16658 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI 84 (318)
Q Consensus 37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~ 84 (318)
+..|=+.+.|.=.+++.++.+++..|+.-+-+-=.++..+..++....
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 347888899999999999999999999988776666666655555443
No 325
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=30.70 E-value=2.7e+02 Score=21.91 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=21.9
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
.+..|+++|.++.-+-.....+-..+.-....++.+.
T Consensus 22 ~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~ 58 (183)
T PF03741_consen 22 FRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSI 58 (183)
T ss_pred HhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777776665444444445555666666666665
No 326
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=29.41 E-value=20 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcch
Q psy16658 43 GSLIAIGAIFGALPAGSIADKFGRK 67 (318)
Q Consensus 43 ~s~~~~~~~~~~~~~g~l~dr~Grr 67 (318)
.......+.+.+.+.|.+.||..||
T Consensus 81 ~~~~~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 81 DWITFAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445566667788889999988765
No 327
>KOG3880|consensus
Probab=28.95 E-value=1.5e+02 Score=25.84 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=59.9
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccch
Q psy16658 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPV---ILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPM 113 (318)
Q Consensus 37 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~---~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~ 113 (318)
+|.-|....|.+|..++.--.-..--+ .-+. +-.--.+..+......+.++++...+.-+..|+-.|..+.-..-
T Consensus 288 sqYRwyqvlYQlGVFiSRSS~~~~~~p--~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~ 365 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISRSSINLFTMP--YLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFH 365 (409)
T ss_pred hcchhhheeeeeeEEEEeccceEEech--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHH
Confidence 346687777877766654433322211 1111 11222333444445556789999999999999988888888888
Q ss_pred hhhhccCchhhhHHHH
Q psy16658 114 FIGEIAESSIRAGVAT 129 (318)
Q Consensus 114 ~i~~~~~~~~r~~~~~ 129 (318)
-+.+-.++++|..+++
T Consensus 366 ~i~~e~~pd~rEfams 381 (409)
T KOG3880|consen 366 NIHKETEPDVREFAMS 381 (409)
T ss_pred HHhhcCCchHHHHhHh
Confidence 8888889999987777
No 328
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=25.86 E-value=2.5e+02 Score=20.04 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH
Q psy16658 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV 186 (318)
Q Consensus 151 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 186 (318)
.......+...++.+++|..+-|..++|-...+...
T Consensus 38 ~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~ 73 (116)
T PF12670_consen 38 ILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLV 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 455555666677777788777665555555544433
No 329
>KOG3880|consensus
Probab=24.81 E-value=1.5e+02 Score=25.91 Aligned_cols=125 Identities=17% Similarity=0.065 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchhhhhc
Q psy16658 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEI 118 (318)
Q Consensus 39 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~ 118 (318)
.|.+.-+-.+...+..+......||+.--.=..+..++.+.+..+.++++|.++-+.+-.+..++.|.--..-.++-+ .
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~ 142 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-R 142 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-c
Confidence 566666677777788888888999876444445566777788888899999999998888888887766544444333 3
Q ss_pred cCchhhhHHHHhhhHhHHhHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhc--cCCeehhhhhhHHHHH
Q psy16658 119 AESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDK--AGRRILLLLSDFVMAL 189 (318)
Q Consensus 119 ~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d~--~g~~~~~~~~~~~~~~ 189 (318)
+++..-. ....-.+.++.+|+.-...+.+. +..|.++.+...+=++
T Consensus 143 Y~~~~i~-------------------------~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~l 190 (409)
T KOG3880|consen 143 YPSIVIA-------------------------GWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPAL 190 (409)
T ss_pred CCCceec-------------------------cccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHH
Confidence 3332211 11122334455666655666664 4566666655444333
No 330
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=23.94 E-value=4.8e+02 Score=22.59 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 247 GSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 247 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
.+++.-..+..-+-..+.|++..++.++
T Consensus 285 ~~ATaQvAaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 285 ASATAQVAAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455566777777666554
No 331
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.68 E-value=2.3e+02 Score=25.00 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhccC
Q psy16658 157 GIVQFIMTALSVVLVDKAG 175 (318)
Q Consensus 157 ~~~~~~~~~~~g~l~d~~g 175 (318)
.+..++.....|++..|++
T Consensus 5 ~i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 5 AILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4455556667777777764
No 332
>PRK11715 inner membrane protein; Provisional
Probab=23.43 E-value=5.8e+02 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658 158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG 192 (318)
Q Consensus 158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 192 (318)
+.-+..++..-++.+...++++..+=.++.+++.+
T Consensus 308 iLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~ 342 (436)
T PRK11715 308 ILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALV 342 (436)
T ss_pred HHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHH
Confidence 33344445555667777777665444444444333
No 333
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=23.39 E-value=1.3e+02 Score=22.54 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=17.7
Q ss_pred ccccchhhhhhHHHHHHHHHHHH
Q psy16658 238 GELFAPEVKGSATGIAVALNWIS 260 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g 260 (318)
.|++||..|....+..+......
T Consensus 59 kDm~Pp~~R~~i~~~~s~t~s~~ 81 (145)
T TIGR00986 59 KDIVPPTTRGWIYHKYSTTTNFV 81 (145)
T ss_pred HhhCCHHHHHHHHHHHHHHHHHH
Confidence 69999999998887776664443
No 334
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.21 E-value=2.7e+02 Score=19.46 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658 160 QFIMTALSVVLVDKAGRRILLLLSDFVMALCLG 192 (318)
Q Consensus 160 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 192 (318)
.++|.+++-|+-++++.++...+.+++.+++.-
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 334444444554557766655544444444433
No 335
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.42 E-value=4.1e+02 Score=21.24 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=28.0
Q ss_pred hcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHH
Q psy16658 227 LGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICFV 290 (318)
Q Consensus 227 ~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~ 290 (318)
.+..|....++.+ .++++|-+..--........-.+..+.+..+.+.+|-+ ..+-+.+++.+.
T Consensus 21 ig~ipvfl~lt~~-~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~ 84 (201)
T TIGR00427 21 IGNIPIFISLTEY-YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLF 84 (201)
T ss_pred chHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344444345444 44444443322222222233334445555666777743 344455544443
No 336
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=21.98 E-value=3.4e+02 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=18.6
Q ss_pred ccccchhhhhhHHHHHHHHHHHHH
Q psy16658 238 GELFAPEVKGSATGIAVALNWISA 261 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g~ 261 (318)
.|++|+..|....+..+.......
T Consensus 61 kdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 61 KDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHH
Confidence 599999999988888776655443
No 337
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=21.84 E-value=4.3e+02 Score=21.24 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=28.8
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh-hHHHHHHHHHH
Q psy16658 238 GELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA-ATFWIFSVICF 289 (318)
Q Consensus 238 ~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~ 289 (318)
.+-.++++|.+..=-.+......-.+.-+.+..+.+.+|.. ..+-+.+++.+
T Consensus 31 t~~~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilL 83 (203)
T COG2095 31 TKGLSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILL 83 (203)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHH
Confidence 35567777776655555555555555555666666766633 24444444433
No 338
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.71 E-value=6.2e+02 Score=23.12 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHH
Q psy16658 158 IVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLG 192 (318)
Q Consensus 158 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 192 (318)
+..+..+++.-++.+...++++..+=.++.+++.+
T Consensus 302 iLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~ 336 (430)
T PF06123_consen 302 ILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALV 336 (430)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 33344445555666777776665444444444333
No 339
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=21.34 E-value=1.6e+02 Score=20.73 Aligned_cols=36 Identities=14% Similarity=-0.095 Sum_probs=24.4
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCC
Q psy16658 270 FLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK 305 (318)
Q Consensus 270 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
.-.|..+|+..+++...++++...+.+.+.|++.-+
T Consensus 52 ~~~d~e~we~~~f~~~~~~~v~~~~~~~y~PD~~i~ 87 (105)
T PF10183_consen 52 EKRDWEGWELPFFFGFSGSLVFGGVFLAYKPDTSIQ 87 (105)
T ss_pred CcchHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 345667888888877666666666666667776543
No 340
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=20.20 E-value=2.1e+02 Score=17.06 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhhhhhhhhhh-hcchhH-HHHHHHHHHHH
Q psy16658 44 SLIAIGAIFGALPAGSIADK-FGRKPV-ILAFCIPFIIS 80 (318)
Q Consensus 44 s~~~~~~~~~~~~~g~l~dr-~Grr~~-~~~~~~~~~~~ 80 (318)
........+.....|+..|+ ++.++. ++++.++..++
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~ 45 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAA 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34455566667777888885 566554 44444443333
Done!