Query psy16658
Match_columns 318
No_of_seqs 279 out of 1089
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 18:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6E-36 2E-40 272.0 18.6 309 2-317 19-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.6E-29 1.6E-33 224.0 15.1 277 4-298 37-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.3E-27 4.6E-32 213.7 17.0 266 4-291 35-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.6E-25 5.4E-30 203.3 15.1 272 30-305 47-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 7.8E-26 2.7E-30 198.3 1.9 262 4-283 9-361 (375)
6 2cfq_A Lactose permease; trans 99.9 4.9E-23 1.7E-27 183.3 8.5 280 9-306 21-407 (417)
7 2xut_A Proton/peptide symporte 99.9 6.4E-22 2.2E-26 181.1 9.3 94 34-127 51-146 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.9E-13 6.6E-18 122.1 12.2 145 150-302 65-210 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 1.3E-12 4.6E-17 118.1 9.9 136 150-297 57-195 (491)
10 2gfp_A EMRD, multidrug resista 99.4 5E-13 1.7E-17 116.7 6.5 142 150-303 38-179 (375)
11 3o7q_A L-fucose-proton symport 99.3 4.4E-12 1.5E-16 112.8 10.3 138 150-296 64-227 (438)
12 2xut_A Proton/peptide symporte 99.3 2E-11 6.7E-16 111.4 12.9 137 150-297 57-197 (524)
13 4gc0_A D-xylose-proton symport 99.0 4E-09 1.4E-13 95.2 14.6 124 150-274 58-188 (491)
14 2cfq_A Lactose permease; trans 98.9 1.2E-09 4.2E-14 96.7 5.9 125 35-180 257-382 (417)
15 2g9p_A Antimicrobial peptide l 51.2 6.1 0.00021 18.1 0.9 14 56-69 2-15 (26)
16 4dve_A Biotin transporter BIOY 26.7 1.4E+02 0.0049 22.7 5.7 24 44-67 100-123 (198)
17 2jpj_A Bacteriocin lactococcin 20.5 75 0.0026 16.4 2.0 25 44-68 13-37 (39)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6e-36 Score=271.97 Aligned_cols=309 Identities=29% Similarity=0.524 Sum_probs=242.1
Q ss_pred ccccccccccccccccccccccccccc-ccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH
Q psy16658 2 LGAVTIGTGLAWTSPVLPILTSTTETS-VLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIIS 80 (318)
Q Consensus 2 ~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~ 80 (318)
++.++.|++.+.++..+|.+.++++.. ..+.+.+..+.|++.+.+.+|..++++++|+++||+|||++++++.+++.++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456788999999999999888774321 1122345567899999999999999999999999999999999999999999
Q ss_pred HHHHH------------------HHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHHh------------
Q psy16658 81 WVLIL------------------FAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG------------ 130 (318)
Q Consensus 81 ~~~~~------------------~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~------------ 130 (318)
+++++ +++|++.++++|+++|++.|...+...++++|+.|+++|++..+.
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 99998 478999999999999999999999999999999999999988770
Q ss_pred ------------------------hhHhHHhHHH---------------------HH-----------------Hhh---
Q psy16658 131 ------------------------GLSAIIPMFI---------------------GE-----------------IAE--- 145 (318)
Q Consensus 131 ------------------------~~~~~~p~~~---------------------~~-----------------~~~--- 145 (318)
......|.++ +| ..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 258 (491)
T 4gc0_A 179 YCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH 258 (491)
T ss_dssp HHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHH
Confidence 0000011110 00 000
Q ss_pred -----cc--cc---------------------------------------------hHHHHHHHHHHHHHHHHHHHHhhc
Q psy16658 146 -----SS--IR---------------------------------------------GISAIIVGIVQFIMTALSVVLVDK 173 (318)
Q Consensus 146 -----~~--~~---------------------------------------------g~~~~~~~~~~~~~~~~~g~l~d~ 173 (318)
++ .+ .....+.++...++.++.+++.||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr 338 (491)
T 4gc0_A 259 SLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK 338 (491)
T ss_dssp HHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00 145566778888999999999999
Q ss_pred cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHH
Q psy16658 174 AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIA 253 (318)
Q Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~ 253 (318)
+|||+.+..+...+.++.+.+....... ...+.......+...++..+..++.+.+.+|++|++.|+++.|+.
T Consensus 339 ~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~ 411 (491)
T 4gc0_A 339 FGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIA 411 (491)
T ss_dssp HCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHH
T ss_pred hcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHH
Confidence 9999999988888887777666543321 223344555566666777778888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hchhhHHHHHHHHHHHHHHHhheeccCCCCCCHHHHHHHhcCC
Q psy16658 254 VALNWISAFIVTLCFVFLVKN------LGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGG 317 (318)
Q Consensus 254 ~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (318)
+..+++++.+++.+.+.+.+. .+....+++++++++++.++.++++||||+++.||.|+.+|++
T Consensus 412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 999999999999888776543 3455678889999999988888899999999999998877653
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=4.6e-29 Score=223.96 Aligned_cols=277 Identities=14% Similarity=0.102 Sum_probs=214.4
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..+++.....+.+|.+.++ + .+..+.|++.+.+.++..++.+++|+++||+|||+++.++.++.+++.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 37 YAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 344556667777888988888 8 99999999999999999999999999999999999999999999999999
Q ss_pred HHH----HhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhH--------------------
Q psy16658 84 ILF----AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLS-------------------- 133 (318)
Q Consensus 84 ~~~----~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~-------------------- 133 (318)
+++ +++++.+++.|+++|++.+...+...+++.|++|+|+|+++++ .++.
T Consensus 109 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~ 188 (451)
T 1pw4_A 109 MGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188 (451)
T ss_dssp HHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 999 9999999999999999999999999999999999999999988 0000
Q ss_pred ----hHHh---HH---H--HHHhh------------------------c------------ccc----------------
Q psy16658 134 ----AIIP---MF---I--GEIAE------------------------S------------SIR---------------- 149 (318)
Q Consensus 134 ----~~~p---~~---~--~~~~~------------------------~------------~~~---------------- 149 (318)
.... .+ . +|..+ + +++
T Consensus 189 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
T 1pw4_A 189 LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 268 (451)
T ss_dssp THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 0000 00 0 11000 0 001
Q ss_pred ----------------------hHHHHHHHHHHHHHHHHHHHHhhcc--CCeehhhhhhHHHH-HHHHHHHHhhhhccCC
Q psy16658 150 ----------------------GISAIIVGIVQFIMTALSVVLVDKA--GRRILLLLSDFVMA-LCLGVLGFYFYMMEDG 204 (318)
Q Consensus 150 ----------------------g~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 204 (318)
|.......++.+++.++.+++.||+ +||+.+..+..+.. ++..++...
T Consensus 269 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 341 (451)
T 1pw4_A 269 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------- 341 (451)
T ss_dssp HHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------
Confidence 4777888899999999999999999 99988877665554 444333221
Q ss_pred CCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhchhhHHHH
Q psy16658 205 KDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWI-SAFIVTLCFVFLVKNLGSAATFWI 283 (318)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~~~~~~ 283 (318)
+....+.......+.+.+...... ....+..|..|+++|+++.|+.+...++ +..++|.+.|.+.|+.|++..+++
T Consensus 342 --~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 418 (451)
T 1pw4_A 342 --PAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 418 (451)
T ss_dssp --CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred --cccCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 011233444444444444444333 3337788999999999999999999999 999999999999999999888888
Q ss_pred HHHHHHHHHHHhhee
Q psy16658 284 FSVICFVGTLFTFVL 298 (318)
Q Consensus 284 ~~~~~~~~~~~~~~~ 298 (318)
.+++.+++.++.+..
T Consensus 419 ~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 419 MIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=1.3e-27 Score=213.73 Aligned_cols=266 Identities=17% Similarity=0.153 Sum_probs=206.7
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..+++.+...+.+|.+.++ +|.++.+.|++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 35 FFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 345566667788889998888 8999999999999999999999999999999999999999999999999999
Q ss_pred H---HHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH-----------------hhhH----------
Q psy16658 84 I---LFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT-----------------GGLS---------- 133 (318)
Q Consensus 84 ~---~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~-----------------~~~~---------- 133 (318)
+ +++++++.+++.|+++|++.+...+...+++.|++|+|+|+++++ ....
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9 888999999999999999999999999999999999999998877 0000
Q ss_pred --------------------hHHhHHH-----------------HHHhhc-----c-------------cc---------
Q psy16658 134 --------------------AIIPMFI-----------------GEIAES-----S-------------IR--------- 149 (318)
Q Consensus 134 --------------------~~~p~~~-----------------~~~~~~-----~-------------~~--------- 149 (318)
.-.+... +|.+++ + ++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQ 267 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChHHHHHHHHH
Confidence 0011111 100000 0 00
Q ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhh
Q psy16658 150 ------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFY 199 (318)
Q Consensus 150 ------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 199 (318)
|.......++..+++++.+++.||++||+.+..+..+..++.+++...
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 345 (438)
T 3o7q_A 268 FCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-- 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--
Confidence 466777788899999999999999999999988887777776655542
Q ss_pred hccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hh
Q psy16658 200 MMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SA 278 (318)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 278 (318)
... .......+.+.+.+... +..+.+..|.+|++ ++++.++.. ...++..++|.+.|.+.|+.| ++
T Consensus 346 ---------~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 346 ---------GGH-VGLIALTLCSAFMSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp ---------CHH-HHHHHHHHHHHHHTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred ---------CCc-HHHHHHHHHHHHHHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 111 22333444555544443 44447777888877 888888877 778999999999999999999 88
Q ss_pred hHHHHHHHHHHHH
Q psy16658 279 ATFWIFSVICFVG 291 (318)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (318)
..+.+.+...++.
T Consensus 413 ~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 413 TAELIPALCFAVI 425 (438)
T ss_dssp GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887665544443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=1.6e-25 Score=203.34 Aligned_cols=272 Identities=12% Similarity=0.095 Sum_probs=194.7
Q ss_pred cCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccc
Q psy16658 30 LNEPVDRGQASLIGSLIAIGAIFGALPAGSIADK-FGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLS 108 (318)
Q Consensus 30 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~ 108 (318)
+|+|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.+++++++|++.+++.|+++|++.+...
T Consensus 47 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 47 GDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 4589999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred cccchhhhhccCchh--hhHHHH------hhhHhHHhHHH-------------------------------H--------
Q psy16658 109 AIIPMFIGEIAESSI--RAGVAT------GGLSAIIPMFI-------------------------------G-------- 141 (318)
Q Consensus 109 ~~~~~~i~~~~~~~~--r~~~~~------~~~~~~~p~~~-------------------------------~-------- 141 (318)
+...+++.|++|+++ |+.+++ .++..+.|.+. +
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 999999999999988 555554 00001111100 0
Q ss_pred ---------HHhh----------------------------------------------------------cccc-----
Q psy16658 142 ---------EIAE----------------------------------------------------------SSIR----- 149 (318)
Q Consensus 142 ---------~~~~----------------------------------------------------------~~~~----- 149 (318)
|.++ +.++
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 0000 0000
Q ss_pred -----------------------------------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhh-----hhhHHHHH
Q psy16658 150 -----------------------------------GISAIIVGIVQFIMTALSVVLVDKAGRRILLL-----LSDFVMAL 189 (318)
Q Consensus 150 -----------------------------------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~ 189 (318)
+.......+...++.++.+++.||++||+... .+..+.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 35566677788888999999999999987655 55555555
Q ss_pred HHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy16658 190 CLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFV 269 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g 269 (318)
+..++.......... .....+.......+.+.+.....+. .+.+..|..|++.|+++.|+.+...++|..++|.+.+
T Consensus 367 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~g~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 367 SFLLMAIPGALYGTS--GKVSPLWLVGSWALVILGEMLISPV-GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp HHTTTHHHHHHCCCC--TTCCTHHHHHHHHHHHHHHHTTTTH-HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCC--CCccHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444432221111 1223444455555555555554444 4488899999999999999999999999999999988
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHhheeccCCCCC
Q psy16658 270 FLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGK 305 (318)
Q Consensus 270 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
.+.+. ++...+...+.++++..++.+...++.+++
T Consensus 444 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 444 LYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp GGGGS-STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654 666778887777777777666655554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=7.8e-26 Score=198.35 Aligned_cols=262 Identities=14% Similarity=0.092 Sum_probs=193.5
Q ss_pred cccccccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy16658 4 AVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVL 83 (318)
Q Consensus 4 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~ 83 (318)
.+..+++.+...+.+|.+.++ +|.++++.+++.+.+.++..++.+++|+++||+||||++..+..+..++.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 445566777788889998888 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHhhccccccccchhhhhccCchhhhHHHH------hhhHhHHhHHH-----------------
Q psy16658 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT------GGLSAIIPMFI----------------- 140 (318)
Q Consensus 84 ~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~------~~~~~~~p~~~----------------- 140 (318)
..++++++.+++.|+++|++.+...+...+++.|++|+|+|++.++ .+...+.|.+.
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998888 11111111111
Q ss_pred --------------HHHhh--cc-------------cc--------------------------------------hHHH
Q psy16658 141 --------------GEIAE--SS-------------IR--------------------------------------GISA 153 (318)
Q Consensus 141 --------------~~~~~--~~-------------~~--------------------------------------g~~~ 153 (318)
+|.++ ++ ++ |...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 241 (375)
T 2gfp_A 162 VLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241 (375)
T ss_dssp HHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 11100 00 00 4666
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeehhhhhhHH-HHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhccccc
Q psy16658 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFV-MALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPI 232 (318)
Q Consensus 154 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (318)
....++..++.++.+++.||.+++ ...+... ...+...+...... ..+.+.......+.+.+.+...+..
T Consensus 242 ~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~g~~~~~~~~~~ 312 (375)
T 2gfp_A 242 ILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFG-------VMNVWTLLVPAALFFFGAGMLFPLA 312 (375)
T ss_dssp HTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH-------HHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc-------cccHHHHHHHHHHHHHHHHHhhHHH
Confidence 777788888888888888887762 2222222 11111111110000 0123334445555666665544444
Q ss_pred ceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Q psy16658 233 PWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWI 283 (318)
Q Consensus 233 ~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 283 (318)
. .+..|..| ++|+++.|+.+...++|..++|.+.+.+.++.+++..+..
T Consensus 313 ~-~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 313 T-SGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp H-HHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred H-HHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 4 88889888 7899999999999999999999999999888777655544
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=4.9e-23 Score=183.29 Aligned_cols=280 Identities=9% Similarity=0.125 Sum_probs=178.3
Q ss_pred ccccccccccccccccccccccCcCCCCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH---HHHH
Q psy16658 9 TGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISW---VLIL 85 (318)
Q Consensus 9 ~~~~~~~~~lp~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~ 85 (318)
...+...+.+|.+.++. +|.++.+.|++.+.+.++..++++++|+++||+||||+++++..+.++.. ....
T Consensus 21 ~~~~~~~~~~~~~l~~~------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 21 FIMGAYFPFFPIWLHDI------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHTTTHHHHHHTT------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777765442 89999999999999999999999999999999999999998887765532 1122
Q ss_pred HHhhHH-HHHHHHHHHHhhccccccccchhhhhccCch--hhhHHHH------hhhHhHHhHHH----------------
Q psy16658 86 FAKNVL-MLFAARFIAGVATGGLSAIIPMFIGEIAESS--IRAGVAT------GGLSAIIPMFI---------------- 140 (318)
Q Consensus 86 ~~~s~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~--~r~~~~~------~~~~~~~p~~~---------------- 140 (318)
+++... .+...+.+.|++.+...+.......++.+++ +|+...+ .++..+.|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~ 174 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 332221 2345566666666655555555555555442 2332222 11111111111
Q ss_pred --------------HHHh------h----c--c-----------cc----------------------------------
Q psy16658 141 --------------GEIA------E----S--S-----------IR---------------------------------- 149 (318)
Q Consensus 141 --------------~~~~------~----~--~-----------~~---------------------------------- 149 (318)
+|.. + + + ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T 2cfq_A 175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254 (417)
T ss_dssp TTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1110 0 0 0 00
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHH
Q psy16658 150 -------GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFI 222 (318)
Q Consensus 150 -------g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (318)
|....+..+..+++.++.+++.||++||+.+..+....++....+... ...+.......+.+
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~ 323 (417)
T 2cfq_A 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-----------TSALEVVILKTLHM 323 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------CSHHHHHHHTTHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHH
Confidence 122233344566778899999999999998887776666654444321 11222233322333
Q ss_pred HHHHhcccccceeeeccccchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccC
Q psy16658 223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIA-VALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPE 301 (318)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
......... .+.+..|.+|++.|+++.+.. +....+|+.++|.+.|.+.|+.|++..|.+.+++++++.++.+...+|
T Consensus 324 ~~~~~~~~~-~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 324 FEVPFLLVG-CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 332222222 237888999999999999994 888889999999999999998888888888888877777766665666
Q ss_pred CCCCC
Q psy16658 302 TKGKT 306 (318)
Q Consensus 302 ~~~~~ 306 (318)
+++.+
T Consensus 403 ~~~~~ 407 (417)
T 2cfq_A 403 PGPLS 407 (417)
T ss_dssp SCTTC
T ss_pred CCchH
Confidence 55444
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.86 E-value=6.4e-22 Score=181.05 Aligned_cols=94 Identities=21% Similarity=0.400 Sum_probs=90.6
Q ss_pred CCCChhHHHHHHHHHHHhhhhhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhhcccccccc
Q psy16658 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKF-GRKPVILAFCIPFIISWVLILFAK-NVLMLFAARFIAGVATGGLSAII 111 (318)
Q Consensus 34 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-s~~~l~~~r~l~G~~~g~~~~~~ 111 (318)
.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..++.++.++++ +++.+++.|+++|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred chhhhhccCchhhhHH
Q psy16658 112 PMFIGEIAESSIRAGV 127 (318)
Q Consensus 112 ~~~i~~~~~~~~r~~~ 127 (318)
.+++.|++|+++|++.
T Consensus 131 ~~~~~~~~~~~~r~~~ 146 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLA 146 (524)
T ss_dssp HHHHHHTCSTTTTTHH
T ss_pred HHHHHHHcCccchHHH
Confidence 9999999999999643
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.48 E-value=1.9e-13 Score=122.13 Aligned_cols=145 Identities=14% Similarity=0.198 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+.++.+++.++..+.... ..+.+..++...+.+.+.+...
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~l~G~~~~~~~ 137 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------TSSIAVMFVLLFLCGWFQGMGW 137 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH-------HSSSSHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc-------cccHHHHHHHHHHHHHHhhhcc
Confidence 377888899999999999999999999999999998888888777652110 0224455566666666666555
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHhheeccCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLVPET 302 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.... +++.|.+|+++|++++++.+....+|..++|.+.+.+.+..| |+..+++.+...++..++.++..||+
T Consensus 138 ~~~~-~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 138 PPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHHH-HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred chHH-HHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 5555 888999999999999999999999999999999999999998 99999998888777666665555553
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=1.3e-12 Score=118.13 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhc-cCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDK-AGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
|+......++..++.++.|+++|| +|||+.+..+..+..++.++.... .+.+...+...+.+.+.+..
T Consensus 57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----------FGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----------CSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHhc
Confidence 478888999999999999999999 899999999988888887776552 33445556666666666655
Q ss_pred ccccceeeeccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 229 YGPIPWMMVGELFAPEV--KGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
.+... +++.|.+|+++ |+++.+..+...++|..++|.+.+.+.++.||+..|++.+....+..+....
T Consensus 126 ~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 126 KPNVS-TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHH-HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHH-HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 88899999988 7788888999999999999999999999999999998877766665555443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.37 E-value=5e-13 Score=116.66 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|.......+...++.++.|+++||+|||+.+..+.....++....... .+.+.......+.+.+.+...
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~l~g~~~~~~~ 106 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-----------SSLTVLIAASAMQGMGTGVGG 106 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHhhh
Confidence 478888899999999999999999999999999988888888777663 223444555555555555444
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhheeccCCC
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETK 303 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.... .++.|..|+++|+++++..+....+|..++|.+.+.+.++.||+..+.+.+....+..+......||++
T Consensus 107 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 107 VMAR-TLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHH-HHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred hhHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 4344 788899999999999999999999999999999999999889999998888877776665555566654
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.33 E-value=4.4e-12 Score=112.85 Aligned_cols=138 Identities=15% Similarity=0.078 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhcc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGY 229 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (318)
|+......++..++.++.|+++||+|||+.+..+..+.+++.++...... ..+.+..++...+.+.+.+...
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~l~G~~~~~~~ 135 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE--------IMNYTLFLVGLFIIAAGLGCLE 135 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------cccHHHHHHHHHHHHhhHHHhh
Confidence 57888899999999999999999999999999999888888877732111 1334555666667777666655
Q ss_pred cccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------------------hhhHHHH
Q psy16658 230 GPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLV-KNLG-------------------------SAATFWI 283 (318)
Q Consensus 230 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g-------------------------~~~~~~~ 283 (318)
.... +++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+ |++.+.+
T Consensus 136 ~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 136 TAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHH-HHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH-HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 5555 88899999999999999999999999999999999998 4443 7788877
Q ss_pred HHHHHHHHHHHhh
Q psy16658 284 FSVICFVGTLFTF 296 (318)
Q Consensus 284 ~~~~~~~~~~~~~ 296 (318)
.+....+..++..
T Consensus 215 ~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 215 IVAIVLLVALLIM 227 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.30 E-value=2e-11 Score=111.40 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc-CCeehhhhhhHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHhc
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKA-GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLG 228 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (318)
|+......++..++.++.|+++||+ |||+.+..+..+..++.++.... ..+.+.......+.+.+.+..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~g~~~~~~ 126 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF----------EHSVQGFYTGLFLIALGSGGI 126 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----------SSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhcccc
Confidence 3677888889999999999999999 99999999888888877776652 113444555556666665554
Q ss_pred ccccceeeeccccchhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhhe
Q psy16658 229 YGPIPWMMVGELFAPEVKGSATGI---AVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297 (318)
Q Consensus 229 ~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (318)
.+... +++.|.+|+++|++..+. .+...++|..++|.+.+.+.++.||+..|.+.+...++..+....
T Consensus 127 ~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 127 KPLVS-SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHH-HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhHH-HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 888999999999776666 888999999999999999999899999998887776665554443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.03 E-value=4e-09 Score=95.19 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCeehhhhhhHHHHHHHHHHHHhhhhccCCC-------CCcccchhHHHHHHHHH
Q psy16658 150 GISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK-------DVSSISFLPLLSVIFFI 222 (318)
Q Consensus 150 g~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 222 (318)
|+......++..+|.++.|+++||+|||+.+..+.++..++.++.++......... ....+.+..++.-++.+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 47777888999999999999999999999999998888888777764321110000 00233445566666666
Q ss_pred HHHHhcccccceeeeccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16658 223 VMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKN 274 (318)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 274 (318)
.+.+......+ .++.|..|+++|++..+..+.....|...++.+.....+.
T Consensus 138 ~g~G~~~~~~~-~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 138 IGVGLASMLSP-MYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHH-HHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 66666555555 8999999999999999999999999988888777666543
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.90 E-value=1.2e-09 Score=96.73 Aligned_cols=125 Identities=12% Similarity=0.031 Sum_probs=102.3
Q ss_pred CCChhHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccchh
Q psy16658 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMF 114 (318)
Q Consensus 35 s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~g~~~~~~~~~ 114 (318)
+..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888888999999999999999999998888888877777777888888888888888877777777889
Q ss_pred hhhccCchhhhHHHHhhhHhHHhHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHhhccCCeehh
Q psy16658 115 IGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI-SAIIVGIVQFIMTALSVVLVDKAGRRILL 180 (318)
Q Consensus 115 i~~~~~~~~r~~~~~~~~~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 180 (318)
+.|.+|++.|++..+ . ......+++.++..+.|++.|+.|....+
T Consensus 337 ~~~~~p~~~~g~~~g---------------------~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f 382 (417)
T 2cfq_A 337 ITSQFEVRFSATIYL---------------------VCFCFFKQLAMIFMSVLAGNMYESIGFQGAY 382 (417)
T ss_dssp HHHHSCHHHHHHHHH---------------------HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHH
T ss_pred HHHHCCHHHHHHHHH---------------------HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHH
Confidence 999999999998777 4 24556688889999999999987644333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.20 E-value=6.1 Score=18.15 Aligned_cols=14 Identities=43% Similarity=0.778 Sum_probs=11.1
Q ss_pred hhhhhhhhhcchhH
Q psy16658 56 PAGSIADKFGRKPV 69 (318)
Q Consensus 56 ~~g~l~dr~Grr~~ 69 (318)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788899999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=26.65 E-value=1.4e+02 Score=22.67 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=18.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcch
Q psy16658 44 SLIAIGAIFGALPAGSIADKFGRK 67 (318)
Q Consensus 44 s~~~~~~~~~~~~~g~l~dr~Grr 67 (318)
.-|.+++.++..+.|++.||..++
T Consensus 100 gGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 100 GGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHcccc
Confidence 456777888888899999987654
No 17
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=20.47 E-value=75 Score=16.39 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=16.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcchh
Q psy16658 44 SLIAIGAIFGALPAGSIADKFGRKP 68 (318)
Q Consensus 44 s~~~~~~~~~~~~~g~l~dr~Grr~ 68 (318)
..|-++-.++..-----+||++||+
T Consensus 13 aaywv~k~lgnmsdvnqa~rinrkk 37 (39)
T 2jpj_A 13 VAYWVGKALGNLSDVNQASRINRKK 37 (39)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHGGG
T ss_pred HHHHHHHHhcchhhhhHHHHhhhhc
Confidence 4555666666665566778888886
Done!