RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16658
(318 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 125 bits (315), Expect = 2e-32
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
IIVG V F T +++ LVD+ GRR LLL+ MA+CL VLG S +
Sbjct: 326 IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF-VTGSSKSSGNV 384
Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273
++ ++ FI F++G+GP+PW++V E+F ++ IAVA NW++ FIV F +++
Sbjct: 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444
Query: 274 NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQI 310
++G F F + +G +F + +PETKG+TL +I
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
Score = 58.1 bits (141), Expect = 2e-09
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL---MLF 94
L+ S+ +G GAL AG ++D+FGRK +L + F+I +L+ A L ML
Sbjct: 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLI 131
Query: 95 AARFIAGVATGGLSAIIPMFIGEIAESSIRA 125
R + G+ G SA++PM++ EIA ++R
Sbjct: 132 VGRVLLGIGVGIASALVPMYLSEIAPKALRG 162
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 114 bits (288), Expect = 9e-29
Identities = 60/161 (37%), Positives = 91/161 (56%), Gaps = 4/161 (2%)
Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
IIVG+V F+ T +++ LVD+ GRR LLLL MA+C VLG + +
Sbjct: 293 IIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGV-ALLGVAKS--KGAGIV 349
Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK 273
++ ++ FI F+LG+GP+PW++V ELF V+ A IA A NW++ F++ F +
Sbjct: 350 AIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITG 409
Query: 274 NLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQREL 314
+G F +F+ + + LF F VPETKG+TL +I
Sbjct: 410 AIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
Score = 63.5 bits (155), Expect = 3e-11
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAK--NVLMLFA 95
+ LI S+ ++G + G+L AG + D+FGRK +L + F+I +L FAK + ML
Sbjct: 47 LSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIV 106
Query: 96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG 130
R I G+ GG+S ++PM+I EIA +R + +
Sbjct: 107 GRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSL 141
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 107 bits (268), Expect = 5e-26
Identities = 55/168 (32%), Positives = 93/168 (55%), Gaps = 13/168 (7%)
Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
+ IIVG++ T L+++ VDK GR+ L ++ MA+ + LG FY +
Sbjct: 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAP 362
Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
+ LLS++F++ F++ +GP+ W+++ E+F ++G A IAVA WI+ + V+ F
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPM 422
Query: 271 LVKNLGSAATF------WIFSVICFVGTLFTFVLVPETKGKTLNQIQR 312
+ KN A F WI+ + + LF + VPETKGKTL +++
Sbjct: 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
Score = 47.4 bits (113), Expect = 5e-06
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 48 IGAIFGALPAGSIADKFGRKPVILAFCIPFIISWV------LILFAKN------VLMLFA 95
IG I G G +++FGR+ + + F IS + + V
Sbjct: 66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVI 125
Query: 96 ARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAII 136
R I G+ G S + PM+I EIA + IR + + AII
Sbjct: 126 YRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAII 166
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 59.7 bits (145), Expect = 6e-10
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 167 SVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFS 226
+V LVD GR+ + L+ F++ + VLGF + +S+ FL + + F +
Sbjct: 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY------NHLSTHGFLAIYVLAQF--FAN 406
Query: 227 LGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVK----------NLG 276
G +++ GE+F + +A GI+ A A I F++L + +
Sbjct: 407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466
Query: 277 SAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRE 313
IF++ F+G LFT L+PETKGK+L ++ E
Sbjct: 467 MGHVLEIFALFMFLGILFTL-LIPETKGKSLEELSGE 502
Score = 30.5 bits (69), Expect = 1.2
Identities = 30/73 (41%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 48 IGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF-----AKNVLM-LFAARFIAG 101
IG + G L G +ADK GRK V I II+ V K+V+ L RF G
Sbjct: 67 IGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLG 126
Query: 102 VATGG---LSAII 111
V GG LSAII
Sbjct: 127 VGIGGDYPLSAII 139
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 51.2 bits (123), Expect = 3e-07
Identities = 32/96 (33%), Positives = 45/96 (46%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
+D Q + S IG FGAL G +AD+ GR+ V+L + F + +L A NV L
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQL 108
Query: 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129
RF+AG+ GGL + + E A R
Sbjct: 109 LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVG 144
Score = 33.9 bits (78), Expect = 0.100
Identities = 18/88 (20%), Positives = 38/88 (43%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR 97
A+ G+L G + G++ G +AD+ G + L + + + ++ + +L
Sbjct: 286 LAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLG 345
Query: 98 FIAGVATGGLSAIIPMFIGEIAESSIRA 125
IAG G + + + ++IRA
Sbjct: 346 AIAGFFVNGGQSGLYALMALFYPTAIRA 373
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 49.2 bits (118), Expect = 2e-06
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF 94
D + L S +G + G+ G ++D+FGRK V+L + +S VL F+ N +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184
Query: 95 AARFIAGVATGGLSAIIPMFIGEIAESSIRAGVAT 129
R + G+ GG+ + E RA V T
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGT 219
Score = 38.5 bits (90), Expect = 0.004
Identities = 31/160 (19%), Positives = 63/160 (39%), Gaps = 19/160 (11%)
Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSI 210
+ I G+V+ ++++L+D+ GRR + S + + L +L F V
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLF----------VPVD 408
Query: 211 SFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVF 270
+ ++ + ++ EL+ V+ G+ + + + I++ V+
Sbjct: 409 LYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS-IISPFLVY 467
Query: 271 LVKNLGSAATFW---IFSVICFVGTLFTFVLVPETKGKTL 307
LG F +F + + + T L PETKG L
Sbjct: 468 ----LGEKWLFLPLVLFGGLALLAGILTLFL-PETKGVPL 502
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 48.0 bits (115), Expect = 3e-06
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 10/137 (7%)
Query: 1 ALGAVTIGTGLAWTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSI 60
AL A IGT +LP + + S G A + + A+G GA +
Sbjct: 19 ALAAFAIGTTEFVPVGLLPPIAADLGVSE-------GAAGQLITAYALGVALGAPLLALL 71
Query: 61 ADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAE 120
+ R+ ++L FI+S +L A + +L AR +AG+A G +I +
Sbjct: 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP 131
Query: 121 SSIRA---GVATGGLSA 134
R + GL+
Sbjct: 132 PGKRGRALALVFTGLTL 148
Score = 32.6 bits (75), Expect = 0.27
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 15/161 (9%)
Query: 139 FIGEIAESSIRGISAIIV--GIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGF 196
F+ +A S+ +S +++ GI FI L L D+ RR L+ ++AL L L F
Sbjct: 237 FLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAA-LLLLALALLALTF 295
Query: 197 YFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVAL 256
+ + L + F+ F+ AP+ A + VA
Sbjct: 296 ------------TGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAA 343
Query: 257 NWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFV 297
+ + ++ LG AAT W+ + + + L +
Sbjct: 344 FNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 47.3 bits (113), Expect = 5e-06
Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
+ QA LI S ++G G+L AG ++D+FGR+ V+L + F + +L+ FA ++ +L
Sbjct: 31 LSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLL 90
Query: 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRA------GVATGGLSAIIPMFIGEIAESS 147
RF+ G+ G L I E R G + + P+ G +AES
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 148 IRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDV 207
+I+ I+ ++ L + L+ +LL L+ F+++ L Y +
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLL---RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLG 207
Query: 208 SSISFLPLLSVIFFIVMF 225
S + LL +F +
Sbjct: 208 LSAAEAGLLLSLFGLGGI 225
Score = 41.5 bits (98), Expect = 4e-04
Identities = 54/261 (20%), Positives = 97/261 (37%), Gaps = 35/261 (13%)
Query: 40 SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA-KNVLMLFAARF 98
L + +GA+ G L G +A+ G + + L I ++ +L+LF + +L+L A F
Sbjct: 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFF 185
Query: 99 IAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGI 158
+ GL +P+++ E+ S G+ + G+
Sbjct: 186 LLSFGYYGLLTYLPLYLQEVLGLSAAEA-----------------------GLLLSLFGL 222
Query: 159 VQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSV 218
+ L +L D+ GRR LLLL ++A +L S LL
Sbjct: 223 GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP-----------SLALLLVA 271
Query: 219 IFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSA 278
+ + P + EL PE +G+A+G+ + + L L+ G
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331
Query: 279 ATFWIFSVICFVGTLFTFVLV 299
F I + + + L +L
Sbjct: 332 GVFLILAALALLAALLLLLLP 352
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 42.8 bits (101), Expect = 1e-04
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
+ + L+ + ++G AG ++D+FGR+ V+L + F + +L+LFA ++ +L
Sbjct: 29 ISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLL 88
Query: 94 FAARFIAGVATGGLSAIIPMFIGEIAESSIRA------GVATGGLSAIIPMFIGEIAESS 147
R + G+ G L I + R G +A+ P+ G +A
Sbjct: 89 LVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF 148
Query: 148 IRGISAIIVGIVQFIMTALSVVLV 171
+ +I+ I+ + L+ +L+
Sbjct: 149 GWRAAFLILAILALLAAVLAALLL 172
Score = 34.3 bits (79), Expect = 0.063
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 14/194 (7%)
Query: 125 AGVATGGLSAIIPMFIGEIAESSIRGISAI--IVGIVQFIMTALSVVLVDKAGRRILLLL 182
AG+ L +P+++ E S I + + + L+ L D+ GRR +LL+
Sbjct: 8 AGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLI 67
Query: 183 SDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFA 242
+ AL L +L F + S LL + + P ++ + F
Sbjct: 68 GLLLFALGLLLLLF------------ASSLWLLLVLRVLQGLGGGALFPAAAALIADWFP 115
Query: 243 PEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPET 302
PE +G A G+ A + A + L L G A F I +++ + + +L+P
Sbjct: 116 PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRP 175
Query: 303 KGKTLNQIQRELGG 316
++ E
Sbjct: 176 PPESKRPKPAEEAP 189
>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional.
Length = 426
Score = 42.6 bits (100), Expect = 2e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR 97
+ + + + IG FG G +ADKFGRKP+++ + + + L A V+ML +R
Sbjct: 54 EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSR 113
Query: 98 FIAGVATGG 106
FI G+ G
Sbjct: 114 FIVGMGMAG 122
Score = 27.6 bits (61), Expect = 9.6
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 27 TSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI-- 84
T + E D G S + + A G + G + G AD+ G K F I ++S++ I
Sbjct: 256 TYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK---TFSIGLLMSFLFIFP 312
Query: 85 LF---AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG 130
LF N L+L A F G+ ++P F+ + +R G+ TG
Sbjct: 313 LFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVR-GLGTG 360
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 41.4 bits (98), Expect = 4e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 58 GSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATG 105
G ++D+ GR+PVIL FI+ ++ LFA ++ +L AA I G+ TG
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG 111
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 41.4 bits (98), Expect = 4e-04
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA--KNVLM 92
+ G S++ + I AI GA +A +FG+K L + I VL+ F ++ +
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314
Query: 93 LFAARFIAGVATGGLSAIIPMFIGEIAE 120
+AG+ G + + + ++ +
Sbjct: 315 FLVLVVLAGIGLGLATLLPWAMLADVVD 342
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 40.6 bits (96), Expect = 7e-04
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAA 96
S SL G G L G ++D++GRKPV+LA F + + +L+ ++ L
Sbjct: 41 SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVL 100
Query: 97 RFI 99
RF+
Sbjct: 101 RFV 103
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 38.4 bits (90), Expect = 0.001
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 44 SLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVA 103
+ A+G + + +G + D+FGRKPV+L F++S + + N+ +L ARF+ G
Sbjct: 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64
Query: 104 TGGLSAIIPMFIGEIAESSIRAGVATGGLSAII 136
I +I R GVA G +SA I
Sbjct: 65 AAFALVAGAALIADIYPPEER-GVALGLMSAGI 96
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 38.5 bits (90), Expect = 0.003
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
+ +L +G G L G ++D++GR+PV+L F +S + + + N+ L
Sbjct: 37 TPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETL 96
Query: 94 FAARFIAGVA 103
RF+
Sbjct: 97 LVLRFVQAFG 106
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 38.4 bits (90), Expect = 0.004
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFA----KNV 90
A L+ L I +G+++D+ GR+PV++ F + + V +L A +
Sbjct: 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSF 312
Query: 91 LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIR----------AGVATGGLSAII 136
+ F + G + + F+ E+ + +R AG GG + I
Sbjct: 313 TLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYI 368
Score = 38.0 bits (89), Expect = 0.005
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
++ I+ FI LS L D+ GRR +L++ + +L M S L
Sbjct: 262 MLSLILFFITIPLSGALSDRIGRRPVLII----FTVLAALLAVPLLMALLD---SGSFTL 314
Query: 214 PLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVAL 256
V+ ++ + GP+ + ELF EV+ + +A L
Sbjct: 315 FFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLAYNL 356
>gnl|CDD|145103 pfam01770, Folate_carrier, Reduced folate carrier. The reduced
folate carrier (a transmembrane glycoprotein) transports
reduced folate into mammalian cells via the carrier
mediated mechanism (as opposed to the receptor mediated
mechanism) it also transports cytotoxic folate analogues
used in chemotherapy, such as methotrexate (MTX).
Mammalian cells have an absolute requirement for
exogenous folates which are needed for growth, and
biosynthesis of macromolecules.
Length = 410
Score = 38.0 bits (89), Expect = 0.005
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 55 LPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVAT 104
+P + D KPVI+ + I++W+L+LF +V+ + F GVAT
Sbjct: 59 VPVFLLTDYLRYKPVIILQGLAGIVTWLLLLFTTSVIAMQVMEFFYGVAT 108
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 37.7 bits (88), Expect = 0.007
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 55 LPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGL 107
L AG IAD+ GRKPV + FII+ +L A+ + A RF+ G+ G
Sbjct: 56 LFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCC 108
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 37.3 bits (86), Expect = 0.008
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 35 DRGQA---SLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVL 91
D GQ+ L +L +G L G + D+FGR+P ++A I ++ ++ A
Sbjct: 73 DIGQSENQGLFSTLWTMGQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFN 132
Query: 92 MLFAARFIAGVATGGLSAIIPMFIGEI 118
L AA + GVA G A P+FIGE+
Sbjct: 133 TLLAAMTLLGVAAGPAGA-SPLFIGEL 158
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 36.8 bits (86), Expect = 0.010
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF--AKNVLM 92
A L+ G + G + + KFG+K + L + + ++L+ F A +V++
Sbjct: 270 PELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVL 329
Query: 93 LFAARFIAGVATGGLSAIIPMFIGEIAE-SSIRAGVATGGLSAIIPMFIGEIAESSIRGI 151
+ A IAGV TG + + + + + + GV G+ F ++ + I
Sbjct: 330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI 389
Query: 152 SAIIVGIVQFI 162
I+G + ++
Sbjct: 390 PGWILGAIGYV 400
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 36.9 bits (86), Expect = 0.012
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLF 94
D Q S +G + GAL G +AD+ GRK +++ F + + A + L
Sbjct: 48 DVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLL 107
Query: 95 AARFIAGVATGGLSAIIPMFIGEIAES 121
AR + GV GL +P I +E+
Sbjct: 108 VARLLTGV---GLGGALPNLIALTSEA 131
Score = 29.5 bits (67), Expect = 2.3
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 36 RGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFA 95
R QA L+ IG G+L G++ D+ + V+L + S + A + +
Sbjct: 254 RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLL 313
Query: 96 ARFIAGV-ATGG---LSAIIPMFI-GEIAESSIRAGVATGGLSAII-PMFIGEI---AES 146
A F AG+ GG L A+ P+F ++ + + A VA G L ++ P+ G++ S
Sbjct: 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRS 373
Query: 147 SIRGISAIIVGIVQFIMTALSVV 169
++ I A I I+ + AL +V
Sbjct: 374 TVGVIGASIPVILVAALAALLLV 396
>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system;
Provisional.
Length = 377
Score = 36.8 bits (86), Expect = 0.013
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
V G + S +G G L G +AD FGRKPVIL + F ++ V A+ + L
Sbjct: 23 VSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82
Query: 94 FAARFIAGVATGGLSAII 111
RF+ G+A S +I
Sbjct: 83 IYMRFLHGLAAAAASVVI 100
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 36.5 bits (85), Expect = 0.014
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 41 LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIA 100
LIG +++ A GA+ AG + ++FG KPV++ + I+ + ++F + L + +
Sbjct: 292 LIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLV 351
Query: 101 GVATGGLSA 109
G + GG A
Sbjct: 352 GTSLGGAQA 360
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 36.1 bits (84), Expect = 0.019
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 48 IGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGL 107
G +F G ++D+ GR+PV+LA FI++ + IL A+++ RF+ G+ +
Sbjct: 59 AGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFI 118
Query: 108 SAI 110
A+
Sbjct: 119 GAV 121
>gnl|CDD|114359 pfam05631, DUF791, Protein of unknown function (DUF791). This
family consists of several eukaryotic proteins of
unknown function.
Length = 354
Score = 35.3 bits (81), Expect = 0.031
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 51 IFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVAT 104
+FG + GS+ADK GRK L +CI +I+S + N +L RF+ G+AT
Sbjct: 84 LFGTI-VGSLADKQGRKRACLTYCILYILSCITKHSP-NYKVLMIGRFLGGIAT 135
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 34.5 bits (79), Expect = 0.067
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 48 IGAIFGALPAGSIADKFGRKPVILAFC-IPFIISWVLILFAKNVLMLFAARFIAGVATGG 106
IGAI G G + D GR+ + ++ + NV +L F + G
Sbjct: 285 IGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQG 344
Query: 107 LSAIIPMFIGEIAESSIRAGVA 128
+ I+P +GE + RA
Sbjct: 345 IWGILPKHLGEYFPTDQRAAGL 366
Score = 31.4 bits (71), Expect = 0.55
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARF 98
ASLI + + FGAL G D++GR+ ++ + F + FA + +F AR
Sbjct: 50 ASLISAALISRW-FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARL 108
Query: 99 IAGVATGG 106
+ G+ GG
Sbjct: 109 VIGIGMGG 116
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 34.7 bits (80), Expect = 0.067
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 39 ASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARF 98
ASLI S I FG L G++ D++GR+ ++ + F + + FA LF AR
Sbjct: 58 ASLI-SAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARL 116
Query: 99 IAGVATGG 106
+ G+ G
Sbjct: 117 VIGMGMAG 124
Score = 32.7 bits (75), Expect = 0.25
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 21/150 (14%)
Query: 35 DRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLI--LFA---KN 89
D + + GA G G + D G + A+ +IS +LI +FA N
Sbjct: 309 DPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK---AYVCSLLISQLLIIPVFAIGGAN 365
Query: 90 VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRA-GV-------ATGGLSAIIPMFIG 141
V +L F + G+S ++P IG ++ RA G+ A GG A+ P+
Sbjct: 366 VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGG--ALAPILGA 423
Query: 142 EIAESSIRGISAIIVGIVQFIMTALSVVLV 171
IA+ G + + + F +T + ++L+
Sbjct: 424 LIAQRLDLGTA---LASLSFSLTFVVILLI 450
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 33.5 bits (77), Expect = 0.16
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 69 VILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPM--FIGEIAESSIR-- 124
V+ C+P ++ LF F + + I + A S +R
Sbjct: 567 VLALVCVPILLLLK-PLFLMREGKKGEFEFGEVMIHQVIHTIEFCLGCVSHTA-SYLRLW 624
Query: 125 -AGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLS 183
+A LSA++ + I SI I+ ++V I+ F++ + + I+ LS
Sbjct: 625 ALSLAHAQLSAVLNTMVILIGFESIGVIALVVVFIIVFVLGH--AINL------IMEGLS 676
Query: 184 DFVMALCLGVLGFY--FYM 200
F+ AL L + F+ FY
Sbjct: 677 AFLHALRLHYVEFFSKFYE 695
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 33.1 bits (76), Expect = 0.18
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 13/138 (9%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAAR 97
Q + S + G + G P G + D+FG + + F + + + L FA + L+ R
Sbjct: 30 QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILR 89
Query: 98 FIAGVATGGLSAIIPMFIGEIAESSIRAGV-----ATGGLSAII--PMFIGEIAESS--- 147
+ G A I + + +S RA + GL II P+ + S
Sbjct: 90 VLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQW 149
Query: 148 ---IRGISAIIVGIVQFI 162
I G+ II G++
Sbjct: 150 AFIIEGVLGIIWGVLWLK 167
Score = 31.9 bits (73), Expect = 0.42
Identities = 44/220 (20%), Positives = 75/220 (34%), Gaps = 35/220 (15%)
Query: 84 ILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEI 143
+L + V L +F+ + G P ++ V GLS + F+ +
Sbjct: 211 LLKDRRVWGLALGQFLVNIGLGFFLTWFPTYL-----------VQERGLSILEAGFMASL 259
Query: 144 AESSIRGISAIIVGIVQFIMTALSVVLVDKAGRR-ILLLLSDFVMALCLGVLGFYFYMME 202
GIV FI L L D RR L+ + + VL +
Sbjct: 260 P------------GIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT- 306
Query: 203 DGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAF 262
+ L L+++ FF LG G I W ++ + + G G+ +L +
Sbjct: 307 -NYVNIPYAALALVALGFF----GLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI 361
Query: 263 IVTLCFVFLVKNLGSAATFWIFSVIC---FVGTLFTFVLV 299
+ + + GS A V+ +G L +LV
Sbjct: 362 VGPIVIGAIAATTGSFA--GALMVVAALALIGALSYLLLV 399
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 33.0 bits (76), Expect = 0.23
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVI-----LAFCIPFIISWVLILFAKNVLM 92
+++ +L + + + PAG +ADKF + VI + +I VL + +
Sbjct: 48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLI--VLAYYLGWFWL 105
Query: 93 LFAARFIAGV 102
FA F+ G
Sbjct: 106 AFAVTFLLGA 115
Score = 32.2 bits (74), Expect = 0.36
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 213 LPLLSVIFFIVMFSLGYGPIPWMMVGELFAPE-VKGSATGIAVALNWISAFIVTLCFVFL 271
L + V+FF+ FS G +P + + APE G L + +
Sbjct: 322 LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF 381
Query: 272 VK-NLGSAATFWIFSVICFVGTLFTFVLVPET 302
L A F++ +++ +GTL+T +L+P++
Sbjct: 382 SGLGLSPAGLFYLIALVTLIGTLYTLLLLPDS 413
>gnl|CDD|216179 pfam00898, Orbi_VP2, Orbivirus outer capsid protein VP2. VP2 acts
as an anchor for VP1 and VP3. VP2 contains a
non-specific DNA and RNA binding domain in the
N-terminus.
Length = 946
Score = 32.7 bits (75), Expect = 0.31
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 142 EIAESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVL-----GF 196
I+ +S +I + +I + RRI+ L+ A L V+ F
Sbjct: 646 TKFVLEIKDLSQLICFVFDYIFEKRRQLRTVDEARRIIYLIRSCSGAERLEVIESFFPNF 705
Query: 197 YFYMM-----EDGKDVSSISFLPLLSVIFFIVM 224
+M + +D+ ++FLPL F+V
Sbjct: 706 SQRLMNLRKSKRIQDLLVLNFLPL----LFLVG 734
>gnl|CDD|234093 TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl
glycosylphosphotransferase. Members of this family are
generally found near other genes involved in the
biosynthesis of a variety of exopolysaccharides. These
proteins consist of two fused domains, an N-terminal
hydrophobic domain of generally low conservation and a
highly conserved C-terminal sugar transferase domain
(pfam02397). Characterized and partially characterized
members of this subfamily include Salmonella WbaP
(originally RfbP) , E. coli WcaJ , Methylobacillus EpsB,
Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B
Streptococcus CpsE (originally CpsD), and Streptococcus
suis Cps2E. Each of these is believed to act in
transferring the sugar from, for instance, UDP-glucose
or UDP-galactose, to a lipid carrier such as
undecaprenyl phosphate as the first (priming) step in
the synthesis of an oligosaccharide "block". This
function is encoded in the C-terminal domain. The
liposaccharide is believed to be subsequently
transferred through a "flippase" function from the
cytoplasmic to the periplasmic face of the inner
membrane by the N-terminal domain. Certain closely
related transferase enzymes such as Sinorhizobium ExoY
and Lactococcus EpsD lack the N-terminal domain and are
not found by this model.
Length = 445
Score = 32.2 bits (74), Expect = 0.34
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 182 LSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL-GYGPIPWMMVGEL 240
L+D + +L F S S L LL ++ F+++F+ G
Sbjct: 1 LADLLALALSLLLAFLLRGGGLLPPPSFYSLLLLLILLLFLILFAASGLYRSWRGRS--- 57
Query: 241 FAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLG-SAATFWIFSVICFVGTLFTFVLV 299
E+ V L W+ F++ L FL+K S ++ V+ V L +L+
Sbjct: 58 LLEELA------RVLLAWLLVFLLLLALAFLLKGFDFSRLVLLLWFVLALVLLLLWRLLL 111
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 31.9 bits (72), Expect = 0.46
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 41 LIGSLIAIGAIFGALPAGSIADKFGRKPVIL---------AFCIPFIISWVLILFAKNVL 91
++G ++ +G + GA G +ADK GRK +L AF F+ + LF
Sbjct: 206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLF----- 260
Query: 92 MLFAARFIAGVATGGLSAIIPMFIGEI 118
R ++G GG I+ + E
Sbjct: 261 ----CRLLSGFGIGGAIPIVFSYFAEF 283
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 31.2 bits (71), Expect = 0.70
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 41 LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIA 100
LI I IG +F G ++D+FGR+P + + S L + A +L + I
Sbjct: 290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFV------ILGSVALFVLAIPAFILINSNVIG 343
Query: 101 GVATG--GLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGI 158
+ G L+ I+ F G +A + L A+ P I A ++ IS ++ G+
Sbjct: 344 LIFAGLLMLAVILNCFTGVMAST----------LPAMFPTHIRYSALAAAFNISVLVAGL 393
Score = 29.7 bits (67), Expect = 2.0
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 53 GALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIP 112
G L G + DK+GR+ ++ + IS F I AT G+ A I
Sbjct: 73 GGLFFGMLGDKYGRQKILAITIVIMSIS------------TFCIGLIPSYATIGIWAPIL 120
Query: 113 MFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGI--SAIIVG-IVQFIMTALSVV 169
+ + ++A+ G + GG +F+ E + RG S + G I F++ A VV
Sbjct: 121 LLLCKMAQ-----GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV 175
Query: 170 LVDKA---------GRRILLLLSDFVMALCLGVLGFY 197
L+ G RI F +AL LG++G Y
Sbjct: 176 LISTIVGEANFLDWGWRI-----PFFIALPLGIIGLY 207
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 31.0 bits (70), Expect = 0.86
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 26/97 (26%)
Query: 49 GAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILF---------------------- 86
GA+ G L G +AD +G +PV + +++ LF
Sbjct: 154 GALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVT 213
Query: 87 ----AKNVLMLFAARFIAGVATGGLSAIIPMFIGEIA 119
K VL LF I VATG ++ I+ +++ E+A
Sbjct: 214 SLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA 250
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 30.9 bits (70), Expect = 0.97
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 58 GSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVA 103
G ++D+ GR+PV++ + F ++ LF ++ ARFI G +
Sbjct: 72 GPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTS 117
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 30.8 bits (70), Expect = 0.99
Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 122 SIRAGVATGGLSAIIPMFIGEIAESSI--RGISAIIVGIVQFIMTALSVVLVDKAGRRIL 179
G+ G ++P+++ ++ + G+ + VG+ + + ++ + DK R L
Sbjct: 264 MSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL 323
Query: 180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSL 227
+ + L L +GFY+ D ++ + F +
Sbjct: 324 VTIG-----LILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF 366
>gnl|CDD|234092 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. This family of proteins encompasses
the E. coli WcaJ protein involved in colanic acid
biosynthesis , the Methylobacillus EpsB protein involved
in methanolan biosynthesis , as well as the GumD protein
involved in the biosynthesis of xanthan. All of these
are closely related to the well-characterized WbaP
(formerly RfbP) protein which is the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose (NOTE: not
glucose) to a polyprenyl carrier (utilizing the highly
conserved C-terminal sugar transferase domain,
pfam02397) a reaction which takes place at the
cytoplasmic face of the inner membrane. The N-terminal
hydrophobic domain is then believed to facilitate the
"flippase" function of transferring the liposaccharide
unit from the cytoplasmic face to the periplasmic face
of the inner membrane. Most of these genes are found
within large operons dedicated to the production of
complex exopolysaccharides such as the enterobacterial
O-antigen. Colanic acid biosynthesis utilizes a
glucose-undecaprenyl carrier , knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 30.6 bits (70), Expect = 1.1
Identities = 19/120 (15%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 182 LSDFVMALCLGVLGFYFYMMEDGKDVSS--ISFLPLLSVIFFIVMFSLG-YGPIPWMMVG 238
L D ++ L +L + G ++ L L ++F ++ G Y
Sbjct: 1 LLDLLLILLALLLAYLLRFGSRGIPDIESYLALLLLAVLLFLLIFALFGLYRSWRR---R 57
Query: 239 ELFAPEVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVL 298
+ + + L W F++ FL+K + ++ ++ F+ L +L
Sbjct: 58 SRLREML------LRILLAWTLTFLILALLAFLLKYGTEFS--RLWLLLWFLLALALLLL 109
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 29.5 bits (67), Expect = 2.2
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 131 GLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVV-------LVDKAGRRILLLLS 183
G SA +PM++ + G+S + G++ F+ + + L D+ G R + L
Sbjct: 236 GFSAYLPMYL-----VTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAV 290
Query: 184 DFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAP 243
MAL +L ++ G S + F+ +F + G G + + P
Sbjct: 291 FVGMALAAALLS--LFLTGFGHGGSFVVFV----AVFLALFVFAGLGNGSVFKMIPVIFP 344
Query: 244 EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAAT-FWIFSVICFVGTLFTFVL 298
+ G+ TGI A+ + F + L F + GS F + V + T+ L
Sbjct: 345 KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400
>gnl|CDD|234091 TIGR03022, WbaP_sugtrans, Undecaprenyl-phosphate galactose
phosphotransferase, WbaP. The WbaP (formerly RfbP)
protein has been characterized as the first enzyme in
O-antigen biosynthesis in Salmonella typhimurium. The
enzyme transfers galactose from UDP-galactose to a
polyprenyl carrier (utilizing the highly conserved
C-terminal sugar transferase domain, pfam02397) a
reaction which takes place at the cytoplasmic face of
the inner membrane. The N-terminal hydrophobic domain is
then believed to facilitate the "flippase" function of
transferring the liposaccharide unit from the
cytoplasmic face to the periplasmic face of the inner
membrane. This model includes the enterobacterial
enzymes, where the function is presumed to be identical
to the S. typhimurium enzyme as well as a somewhat
broader group which are likely to catalyze the same or
highly similar reactions based on a phylogenetic
tree-building analysis of the broader sugar transferase
family. Most of these genes are found within large
operons dedicated to the production of complex
exopolysaccharides such as the enterobacterial
O-antigen. The most likely heterogeneity would be in the
precise nature of the sugar molecule transferred.
Length = 456
Score = 29.6 bits (67), Expect = 2.2
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 13/115 (11%)
Query: 180 LLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGE 239
L L D + L + + L L V F V + YG P G
Sbjct: 1 LFLGDIAALVFAIYLALLLRYLFGDSSLIWFLLLRSLPVGLFFVAYRAHYGLYP----GT 56
Query: 240 LFAP--EVKGSATGIAVALNWISAFIVTLCFVFLVKNLGSAATF---WIFSVICF 289
+P E++ + +A + FI+ L F V S F W +++
Sbjct: 57 GMSPWEELR----RLTLATFALFLFILALAFFTKVSEPYSRLVFLLAWGLALVLV 107
>gnl|CDD|234225 TIGR03480, HpnN, hopanoid biosynthesis associated RND transporter
like protein HpnN. The genomes containing members of
this family share the machinery for the biosynthesis of
hopanoid lipids. Furthermore, the genes of this family
are usually located proximal to other components of this
biological process. The proteins appear to be related to
the RND family of export proteins, particularly the
hydrophobe/amphiphile efflux-3 (HAE3) family represented
by TIGR00921.
Length = 862
Score = 29.2 bits (66), Expect = 3.7
Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 35/191 (18%)
Query: 13 WTSPVLPILTSTTETSVLNEPVDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILA 72
P L L + ++ + + GQA L G + I AL A ++ KP
Sbjct: 142 AADPSLRGLFTALTLAL--QGLKAGQAQLPG----LAPILDAL-AEALRAFLEGKPAPF- 193
Query: 73 FCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGV----- 127
SW ++ K+ + RFI S++ P E A ++IRA
Sbjct: 194 -------SWQALMSGKDAALAPRRRFIIVQPVLDYSSLEP---AEKAINAIRAAAKDLRL 243
Query: 128 -ATGGLSAIIPMFIGEIA------ESSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILL 180
G++ + GE+A + G A + G++ F++ + + L ++ R +
Sbjct: 244 DEDHGVTVRL---TGEVALSDEELATVSEG--ATVAGLLSFVLVLVLLWLALRSPRLVFA 298
Query: 181 LLSDFVMALCL 191
+L ++ L L
Sbjct: 299 VLVTLIVGLIL 309
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 29.1 bits (66), Expect = 4.1
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 151 ISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGV 193
I + + F++ L +D AG++ L+LS + LG+
Sbjct: 191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 28.4 bits (64), Expect = 5.1
Identities = 30/146 (20%), Positives = 64/146 (43%), Gaps = 14/146 (9%)
Query: 38 QASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAF-----CIPFIISWVLILFAKNVLM 92
SL + + + AG++AD++ RK V++ + ++ +V +L N+
Sbjct: 35 VLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQ 94
Query: 93 LFAARFIAGVATG----GLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMF---IGEIAE 145
++ I +A A++P + E E +A + + ++ + IG +
Sbjct: 95 VYVLAGILAIAQAFFTPAYQAMLPDLVPE--EQLTQANSLSQAVRSLFYIVGPGIGGLMY 152
Query: 146 SSIRGISAIIVGIVQFIMTALSVVLV 171
+++ AI V V F ++AL +V V
Sbjct: 153 ATLGIKWAIWVDAVGFAISALLIVSV 178
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 28.2 bits (63), Expect = 5.5
Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV--L 91
+ G L S+ +I G G+++DK GR+ + + +LF + +
Sbjct: 237 LSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV 296
Query: 92 MLFAARFIAGVATGGLSAIIPMFIGEI 118
+ A + GG ++ P + +I
Sbjct: 297 LFLATVALVFFTWGGTISLFPSLVSDI 323
Score = 27.8 bits (62), Expect = 8.1
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 45 LIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVAT 104
L+ IG G +ADKFG + V + I + + + A ++ L+ +A
Sbjct: 46 LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV 105
Query: 105 G-----GLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIV 159
G L+ + F + +S G S I+ I + + I +GI+
Sbjct: 106 GIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165
Query: 160 QFIMTALSVVLVDKAGRRIL 179
++ L L+ +++
Sbjct: 166 FLLVIVLGAFLIGYPPGQLI 185
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 28.4 bits (64), Expect = 5.6
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKF---GRKPVILAFCIPFIISWVLILFAKNV 90
+A+ SL + + G L AG ++DK R P+ L F + S VL A N
Sbjct: 285 FSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNG 344
Query: 91 --LMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATG 130
L+ FI G G +I + E AG ATG
Sbjct: 345 SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA-AGTATG 385
>gnl|CDD|225752 COG3211, PhoX, Predicted phosphatase [General function prediction
only].
Length = 616
Score = 28.3 bits (63), Expect = 5.9
Identities = 16/69 (23%), Positives = 24/69 (34%)
Query: 175 GRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPW 234
RR L S A+ LG L + ++ +SF + + V GYG
Sbjct: 22 SRRKFLKGSAAAAAIALGALAPLAAALAGAAALARLSFKEVTAGTDDTVHVPEGYGATVL 81
Query: 235 MMVGELFAP 243
G+ P
Sbjct: 82 DPWGDPLFP 90
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 28.2 bits (63), Expect = 6.1
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 58 GSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVATGGLSAI 110
G DK+G + V++ I + WVL +A ++ L+AA +AG+ G +
Sbjct: 59 GWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAGAVYGT 111
>gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed.
Length = 394
Score = 28.3 bits (63), Expect = 6.3
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 34 VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
+ G A ++ A A+F +L R+ V++ F + +S +L+ FA + +L
Sbjct: 52 ISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLL 111
Query: 94 FAARFIAGVATGGLSAI 110
R G+A GG A+
Sbjct: 112 LIGRACLGLALGGFWAM 128
>gnl|CDD|179639 PRK03735, PRK03735, cytochrome b6; Provisional.
Length = 223
Score = 27.8 bits (62), Expect = 6.6
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 218 VIFFIVMFSLGYG--PIPWMMVGELFAPEVKGSATGIAVALNWISAFIVTL 266
V+ F V LG+ +PW FA +V + IA A+ I FI TL
Sbjct: 130 VLIFFVTVGLGFTGYLLPWDQKA-YFATKV---GSQIAEAIPVIGDFIKTL 176
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain
[Unknown function, General].
Length = 499
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 37 GQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAF 73
G+ +L G L I G LPA ++A K GRK +I+
Sbjct: 103 GELALDGKLRGIK---GVLPAIALAQKSGRKFIIVPK 136
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 27.3 bits (61), Expect = 7.1
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 258 WISAFIVTLCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLVPETKGKTLNQIQRELGGG 317
W+ ++ L + L+ T + ++ +G L + N + L G
Sbjct: 17 WLLLALLALLLLLLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRA---ANDLSHLLDGK 73
Query: 318 K 318
+
Sbjct: 74 E 74
>gnl|CDD|129888 TIGR00806, rfc, RFC reduced folate carrier. The Reduced Folate
Carrier (RFC) Family (TC 2.A.48) Members of the RFC
family mediate the uptake of folate, reduce folate,
derivatives of reduced folate and the drug,
methotrexate. Proteins of the RFC family are so-far
restricted to animals. RFC proteins possess 12 putative
transmembrane a-helical spanners (TMSs) and evidence for
a 12 TMS topology has been published for the human RFC.
The RFC transporters appear to transport reduced folate
by an energy-dependent, pH-dependent, Na+-independent
mechanism. Folate:H+ symport, folate:OH- antiport and
folate:anion antiport mechanisms have been proposed, but
the energetic mechanism is not well defined [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 511
Score = 27.9 bits (62), Expect = 7.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 55 LPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNV 90
+P + D KPV++ + F+ W+L+L +V
Sbjct: 80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV 115
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 28.2 bits (63), Expect = 7.7
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 63 KFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAG-----------VATGGLSAII 111
+ GR + +AF + ++ + +L+L A + AR I VA G L +
Sbjct: 269 EAGRDGLQIAFALLYLSTALLVLLAAIWTAIAFARRIVRPIRKLIEAADEVADGDLDVQV 328
Query: 112 P 112
P
Sbjct: 329 P 329
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 8.1
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 45 LIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIAGVAT 104
LI +G + L G G P+ L II V+++ + G A
Sbjct: 486 LILLGILLIVL--GGFGLVVGLGPLGLI-GKYLIIGGVVLIILGEGI----DGKSLGGAL 538
Query: 105 GGLSAI-IPMFIGEIAESSIR---AGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQ 160
GGL I ++G++ S R G+A G++ + G + S G+ IIVGI+
Sbjct: 539 GGLGLYEITGYLGDVL-SYARLMALGLAGAGIAMAFNLMAGLLPPSI--GVIGIIVGIII 595
Query: 161 FIM 163
FI
Sbjct: 596 FIF 598
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 27.4 bits (61), Expect = 8.1
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 178 ILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIFFIVMFSLGYGPIPWMMV 237
+L LL + + L VL FY+ + + +I L + F + L + +
Sbjct: 88 LLFLLYLTLYLILLLVLSFYYLV----YLIRNIELFFFLILSLFSSIILLVLSLFFLLFL 143
Query: 238 GELFA 242
L
Sbjct: 144 SFLLF 148
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 27.6 bits (62), Expect = 8.8
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 174 AGRRILLLLSDFVMALCLGVLGFYFY-----MMEDGKDVSSISFLPLLSVIFFIVMFSLG 228
AG L LL + +L D+ S+ L LL+V+ + +F
Sbjct: 37 AGSAYLFLLGSVFARRLIALLLLTLILIPLPFSLSVTDLFSLVVLLLLTVLLLLSLFVAL 96
Query: 229 YGPI--PWMMVGELFAPEV 245
+ + VG LF+ E
Sbjct: 97 LVGLASNLLQVGFLFSTEA 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.429
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,897,799
Number of extensions: 1770888
Number of successful extensions: 4820
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4410
Number of HSP's successfully gapped: 799
Length of query: 318
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 221
Effective length of database: 6,635,264
Effective search space: 1466393344
Effective search space used: 1466393344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.5 bits)