RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16658
         (318 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 36.2 bits (82), Expect = 0.004
 Identities = 27/274 (9%), Positives = 64/274 (23%), Gaps = 8/274 (2%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILA----FCIPFIISWVLILFAKN 89
             RG      S I+I   F     GS++D+   +  + A         +    +     +
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 90  VLMLFAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLS----AIIPMFIGEIAE 145
           + ++F   F+ G   G         +        R G+ +              +  +  
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 146 SSIRGISAIIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGK 205
            +        + +  F    +++                 +          Y    E   
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 206 DVSSISFLPLLSVIFFIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVALNWISAFIVT 265
               I    +L       +                ++P         A+  +  + F+  
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE 295

Query: 266 LCFVFLVKNLGSAATFWIFSVICFVGTLFTFVLV 299
              +      G  +           G  F  ++ 
Sbjct: 296 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 329


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 33.6 bits (75), Expect = 0.025
 Identities = 21/203 (10%), Positives = 53/203 (26%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLML 93
           + +    +I + I++ ++      G ++DK G +  +L      ++ +          +L
Sbjct: 40  ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99

Query: 94  FAARFIAGVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISA 153
                +  +  G              E+ I                 G +  +    I  
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159

Query: 154 IIVGIVQFIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFL 213
           I+  I    +  L           +    +D   +  +       +     K    +   
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQ 219

Query: 214 PLLSVIFFIVMFSLGYGPIPWMM 236
           P L  +   V+       +    
Sbjct: 220 PKLWFLSLYVIGVSCTYDVFDQQ 242



 Score = 33.2 bits (74), Expect = 0.040
 Identities = 23/272 (8%), Positives = 72/272 (26%), Gaps = 2/272 (0%)

Query: 41  LIGSLIAIGAIFGALPAGSIADKFGRKPVILAFCIPFIISWVLILFAKNVLMLFAARFIA 100
                  +G   GA   G +     +    L      I++ +L     +           
Sbjct: 142 RARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV 201

Query: 101 GVATGGLSAIIPMFIGEIAESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQ 160
           G      S  + + +    +    +    G                +    +      V 
Sbjct: 202 GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVF 261

Query: 161 FIMTALSVVLVDKAGRRILLLLSDFVMALCLGVLGFYFYMMEDGKDVSSISFLPLLSVIF 220
             +T +  +L         L+++       L + G    +   G   ++ +   ++    
Sbjct: 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321

Query: 221 FIVMFSLGYGPIPWMMVGELFAPEVKGSATGIAVAL-NWISAFIVTLCFVFLVKNLGSAA 279
            +           +  +   F      +   +       ++   +++    + +++G   
Sbjct: 322 HMFEVPFLLVGC-FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG 380

Query: 280 TFWIFSVICFVGTLFTFVLVPETKGKTLNQIQ 311
            + +  ++    TL +   +      +L + Q
Sbjct: 381 AYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412


>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
          Length = 197

 Score = 29.4 bits (66), Expect = 0.40
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 120 ESSIRAGVATGGLSAIIPMFIGEIAESSIRGISAIIVGIVQFIMTALSVVLVDKA 174
           ES + +G+A+     I    +G  A     G+ AI VGI   ++ A+   L+D  
Sbjct: 134 ESWVLSGIASSVALGIFSATLGAYA--LSLGVPAIAVGIAGILLAAVVGALIDDK 186


>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 26.4 bits (57), Expect = 4.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 34  VDRGQASLIGSLIAIGAIFGALPAGSIADKFGRK 67
           VD+ Q + I  + A+G   GA+    +A   GR+
Sbjct: 169 VDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRR 202


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 25.9 bits (56), Expect = 6.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 281 FWIFSVICFVGTLFTFVLVP 300
            ++F VIC +GT   F+   
Sbjct: 224 LYVFFVICSIGTFSIFLDAS 243


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 25.5 bits (55), Expect = 8.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)

Query: 281 FWIFSVICFVGTLFTFV 297
            +I + +  +GT+F FV
Sbjct: 234 MFIITPVMVLGTIFIFV 250


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.429 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,132,334
Number of extensions: 50426
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 27
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.4 bits)