BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1666
(981 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 164/279 (58%), Gaps = 13/279 (4%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTK-PRARGVIVFGSDQEV 132
AF+EL A+ +CIA +K+ ++G E+++D ++ KL + P+AR V+ F V
Sbjct: 211 AFKELA---AQEGLCIAHSDKIYSNAG---EKSFDRLLRKLRERLPKARVVVCFCEGMTV 264
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
G++ A+RRL G FS +GSDGW+ R V +G E E G ++++ Q+ V+ FDDYFL
Sbjct: 265 RGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLK 324
Query: 193 LTVENNRRNPWFVDPPLEDH-FRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQ 251
L ++ N RNPWF P H F+C+ P N ++ CT +E L + + + ++
Sbjct: 325 LRLDTNTRNPWF--PEFWQHRFQCRLP--GHLLENPNFKKVCTGNESLEENYVQ-DSKMG 379
Query: 252 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311
FV +A+ A + L +MH LC G VGLCDAM+P G +LL +L K SF G+S + FD+
Sbjct: 380 FVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDE 439
Query: 312 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMF 350
GD P RY+I++ + Y +V VG + EG L ++ +
Sbjct: 440 KGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDDY 478
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 121/255 (47%), Gaps = 52/255 (20%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
+ SDGW+ R V +G E E G ++++ Q+ V+ FDDYFL L ++ N RNPWF
Sbjct: 283 IGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWF------ 336
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
EFW+ F+C+ P
Sbjct: 337 -------------------------------------------PEFWQHRFQCRLP--GH 351
Query: 646 TPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAM 705
N ++ CT +E L + + + ++ FV +A+ A + L +MH LC G VGLCDAM
Sbjct: 352 LLENPNFKKVCTGNESLEENYVQ-DSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAM 410
Query: 706 RPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 765
+P G +LL +L K SF G+S + FD+ GD P RY+I++ + Y +V VG + E
Sbjct: 411 KPIDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE 470
Query: 766 GELRLNMSAIQFKLS 780
G L ++ IQ S
Sbjct: 471 GVLNIDDYKIQMNKS 485
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 183 bits (465), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 163/279 (58%), Gaps = 13/279 (4%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTK-PRARGVIVFGSDQEV 132
AF+EL A+ + IA +K+ ++G E+++D ++ KL + P+AR V+ F V
Sbjct: 216 AFKELA---AQEGLSIAHSDKIYSNAG---EKSFDRLLRKLRERLPKARVVVCFCEGMTV 269
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
G++ A+RRL G FS +GSDGW+ R V +G E E G ++++ Q+ V+ FDDYFL
Sbjct: 270 RGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLK 329
Query: 193 LTVENNRRNPWFVDPPLEDH-FRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQ 251
L ++ N RNPWF P H F+C+ P N ++ CT +E L + + + ++
Sbjct: 330 LRLDTNTRNPWF--PEFWQHRFQCRLP--GHLLENPNFKRICTGNESLEENYVQ-DSKMG 384
Query: 252 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311
FV +A+ A + L +MH LC G VGLCDAM+P G +LL +L K SF G+S + FD+
Sbjct: 385 FVINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDE 444
Query: 312 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMF 350
GD P RY+I++ + Y +V VG + EG L ++ +
Sbjct: 445 KGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDDY 483
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 122/259 (47%), Gaps = 52/259 (20%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
+ SDGW+ R V +G E E G ++++ Q+ V+ FDDYFL L ++ N RNPWF
Sbjct: 288 IGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWF------ 341
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
EFW+ F+C+ P
Sbjct: 342 -------------------------------------------PEFWQHRFQCRLP--GH 356
Query: 646 TPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAM 705
N ++ CT +E L + + + ++ FV +A+ A + L +MH LC G VGLCDAM
Sbjct: 357 LLENPNFKRICTGNESLEENYVQ-DSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAM 415
Query: 706 RPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 765
+P G +LL +L K SF G+S + FD+ GD P RY+I++ + Y +V VG + E
Sbjct: 416 KPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE 475
Query: 766 GELRLNMSAIQFKLSHPSP 784
G L ++ IQ S P
Sbjct: 476 GVLNIDDYKIQMNKSGLVP 494
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 158/277 (57%), Gaps = 8/277 (2%)
Query: 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTK-PRARGVIVFGSDQE 131
+ E + + AK I IA K+ ++G E+++D ++ KL + P+AR V F
Sbjct: 213 SGMEAFKDMSAKEGISIAHSYKIYSNAG---EQSFDKLLKKLTSHLPKARVVACFCEGMT 269
Query: 132 VAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFL 191
V G++ A+RRL G F +GSDGW+ R V+DG + E G ++++ Q+ VK FDDY+L
Sbjct: 270 VRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQREAVGGITIKLQSPDVKWFDDYYL 329
Query: 192 NLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQ 251
L E N RNPWF + + F+C+ + NS Y+ C + L + + ++
Sbjct: 330 KLRPETNHRNPWFQEF-WQHRFQCRLEGFPQE--NSKYNKTCNSSLTLKTHHVQ-DSKMG 385
Query: 252 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311
FV +A+ + + L +M LC G GLCDAM+P G +LL+ L K +F G+S D FD+
Sbjct: 386 FVINAIYSMAYGLHNMQMSLCPGYAGLCDAMKPIDGRKLLESLMKTNFTGVSGDTILFDE 445
Query: 312 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348
+GD P RY I++FK++ + ++ VG + GEL+++
Sbjct: 446 NGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGELKMD 482
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 121/254 (47%), Gaps = 52/254 (20%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SDGW+ R V+DG + E G ++++ Q+ VK FDDY+L L E N RNPWF
Sbjct: 291 SDGWADRYDVTDGYQREAVGGITIKLQSPDVKWFDDYYLKLRPETNHRNPWF-------- 342
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
EFW+ F+C+ +
Sbjct: 343 -----------------------------------------QEFWQHRFQCRLEGFPQE- 360
Query: 648 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 707
NS Y+ C + L + + ++ FV +A+ + + L +M LC G GLCDAM+P
Sbjct: 361 -NSKYNKTCNSSLTLKTHHVQ-DSKMGFVINAIYSMAYGLHNMQMSLCPGYAGLCDAMKP 418
Query: 708 TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGE 767
G +LL+ L K +F G+S D FD++GD P RY I++FK++ + ++ VG + GE
Sbjct: 419 IDGRKLLESLMKTNFTGVSGDTILFDENGDSPGRYEIMNFKEMGKDYFDYINVGSWDNGE 478
Query: 768 LRLNMSAIQFKLSH 781
L+++ + K S+
Sbjct: 479 LKMDDDEVWSKKSN 492
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 142/244 (58%), Gaps = 5/244 (2%)
Query: 107 YDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGS 166
+D I+ +L+ P +R V++F +D+++ ++ A +R + G F WVGSD W ++
Sbjct: 235 FDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQH 294
Query: 167 EAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYN 226
E EG +++QP+ V+GFD YF + T+ENNRRN WF + E++F CK S +
Sbjct: 295 EDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAE-YWEENFNCKLTISGSKKED 353
Query: 227 SHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPT 285
+ +CT E++ +D+ E ++QFV DAV A + AL HM+ DLC G+C M
Sbjct: 354 T--DRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQA 411
Query: 286 KGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGEL 345
G +LLKY+R V+F G + F+K+GD P RY+I ++ + +G++ + EL
Sbjct: 412 GGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD-EL 470
Query: 346 RLNM 349
+LN+
Sbjct: 471 QLNI 474
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 53/253 (20%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
V SD W ++ E EG +++QP+ V+GFD YF + T+ENNRRN WF
Sbjct: 279 VGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFA----- 333
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
E+WE++F CK S
Sbjct: 334 --------------------------------------------EYWEENFNCKLTISGS 349
Query: 646 TPYNSHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDA 704
++ +CT E++ +D+ E ++QFV DAV A + AL HM+ DLC G+C
Sbjct: 350 KKEDT--DRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE 407
Query: 705 MRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYL 764
M G +LLKY+R V+F G + F+K+GD P RY+I ++ + +G++
Sbjct: 408 MEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWT 467
Query: 765 EGELRLNMSAIQF 777
+ EL+LN+ +Q+
Sbjct: 468 D-ELQLNIEDMQW 479
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 169 bits (428), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 142/244 (58%), Gaps = 5/244 (2%)
Query: 107 YDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGS 166
+D I+ +L+ P +R V++F +D+++ ++ A +R + G F WVGSD W ++
Sbjct: 235 FDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQH 294
Query: 167 EAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYN 226
E EG +++QP+ V+GFD YF + T+ENNRRN WF + E++F CK S +
Sbjct: 295 EDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAE-YWEENFNCKLTISGSKKED 353
Query: 227 SHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPT 285
+ +CT E++ +D+ E ++QFV DAV A + AL HM+ DLC G+C M
Sbjct: 354 T--DRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQA 411
Query: 286 KGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGEL 345
G +LLKY+R V+F G + F+K+GD P RY+I ++ + +G++ + EL
Sbjct: 412 GGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTD-EL 470
Query: 346 RLNM 349
+LN+
Sbjct: 471 QLNI 474
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 118/253 (46%), Gaps = 53/253 (20%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
V SD W ++ E EG +++QP+ V+GFD YF + T+ENNRRN WF
Sbjct: 279 VGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFA----- 333
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
E+WE++F CK S
Sbjct: 334 --------------------------------------------EYWEENFNCKLTISGS 349
Query: 646 TPYNSHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDA 704
++ +CT E++ +D+ E ++QFV DAV A + AL HM+ DLC G+C
Sbjct: 350 KKEDT--DRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPE 407
Query: 705 MRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYL 764
M G +LLKY+R V+F G + F+K+GD P RY+I ++ + +G++
Sbjct: 408 MEQAGGKKLLKYIRHVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWT 467
Query: 765 EGELRLNMSAIQF 777
+ EL+LN+ +Q+
Sbjct: 468 D-ELQLNIEDMQW 479
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 141/277 (50%), Gaps = 20/277 (7%)
Query: 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEV 132
T E E +ICIA EK+ + + ++YD ++ +L+ KP AR V++F +
Sbjct: 201 TGIEAFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDS 257
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
++ A R+NA SF+WV SDGW A+ + GSE G ++L+ ++PV+ FD YF +
Sbjct: 258 RELIAAANRVNA--SFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQS 315
Query: 193 LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 252
L NN RNPWF D E F+C N ++ C H + E ++ F
Sbjct: 316 LNPYNNHRNPWFRD-FWEQKFQCSLQNK------RNHRQVCDKHLAIDSSNYEQESKIMF 368
Query: 253 VSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQGL------SED 305
V +AV A + AL M LC LCDAM+ G +L K YL K+ F ++
Sbjct: 369 VVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADS 428
Query: 306 HFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 342
KFD GDG RYN+ + +Q G Y +++VG + E
Sbjct: 429 IVKFDTFGDGMGRYNVFNLQQT-GGKYSYLKVGHWAE 464
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 141/335 (42%), Gaps = 68/335 (20%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
V SDGW A+ + GSE G ++L+ ++PV+ FD YF +L NN RNPWF D
Sbjct: 274 VASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRD---- 329
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
FWE F+C N
Sbjct: 330 ---------------------------------------------FWEQKFQCSLQNKR- 343
Query: 646 TPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAM 705
++ C H + E ++ FV +AV A + AL M LC LCDAM
Sbjct: 344 -----NHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAM 398
Query: 706 RPTKGPELLK-YLRKVSFQGL------SEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWV 758
+ G +L K YL K+ F ++ KFD GDG RYN+ + +Q G Y ++
Sbjct: 399 KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNLQQT-GGKYSYL 457
Query: 759 QVGEYLEGELRLNMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQ 818
+VG + E L L++ +I + S S P S CS PC + K G+ CCW C C Y+
Sbjct: 458 KVGHWAE-TLSLDVDSIHW--SRNSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYE 514
Query: 819 IRLPSDETQCLTCPEGTKPDLLRQNCLEIPAMFIE 853
+ DE C+ C G P C +P +I+
Sbjct: 515 YLV--DEFTCMDCGPGQWPTADLSGCYNLPEDYIK 547
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 140/277 (50%), Gaps = 20/277 (7%)
Query: 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEV 132
T E E +I IA EK+ + + ++YD ++ +L+ KP AR V++F +
Sbjct: 200 TGIEAFEQEARLRNISIATAEKVGRSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDS 256
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
++ A R NA SF+WV SDGW A+ + GSE G ++L+ + PV+ FD YF +
Sbjct: 257 RELIAAASRANA--SFTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQS 314
Query: 193 LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 252
L NN RNPWF D E F+C N ++ C H + E ++ F
Sbjct: 315 LNPYNNHRNPWFRD-FWEQKFQCSLQNK------RNHRRVCDKHLAIDSSNYEQESKIMF 367
Query: 253 VSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQG------LSED 305
V +AV A + AL M LC LCDAM+ G +L K YL K++F ++
Sbjct: 368 VVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADS 427
Query: 306 HFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 342
KFD GDG RYN+ +F+ + G Y +++VG + E
Sbjct: 428 IVKFDTFGDGMGRYNVFNFQNV-GGKYSYLKVGHWAE 463
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 110/259 (42%), Gaps = 64/259 (24%)
Query: 526 VRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAY 585
V SDGW A+ + GSE G ++L+ + PV+ FD YF +L NN RNPWF D
Sbjct: 273 VASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRD---- 328
Query: 586 VVFRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSR 645
FWE F+C N
Sbjct: 329 ---------------------------------------------FWEQKFQCSLQNKR- 342
Query: 646 TPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAM 705
++ C H + E ++ FV +AV A + AL M LC LCDAM
Sbjct: 343 -----NHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAM 397
Query: 706 RPTKGPELLK-YLRKVSFQG------LSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWV 758
+ G +L K YL K++F ++ KFD GDG RYN+ +F+ + G Y ++
Sbjct: 398 KILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNV-GGKYSYL 456
Query: 759 QVGEYLEGELRLNMSAIQF 777
+VG + E L L++++I +
Sbjct: 457 KVGHWAE-TLSLDVNSIHW 474
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 84 KSSICIAVKEKLVKDSGVAEERAYD----DIVTKLMTKPRARGVIVFGSDQEVAGVMRAV 139
+S++ + + E++ D+ + ++ +D + +T L T A +V + GV++ +
Sbjct: 23 ESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDM 82
Query: 140 RRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 182
+NA G G + ++ L +G E ++ L P NP
Sbjct: 83 GEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNP 125
>pdb|1TUU|A Chain A, Acetate Kinase Crystallized With Atpgs
pdb|1TUU|B Chain B, Acetate Kinase Crystallized With Atpgs
pdb|1TUY|A Chain A, Acetate Kinase Complexed With Adp, Alf3 And Acetate
pdb|1TUY|B Chain B, Acetate Kinase Complexed With Adp, Alf3 And Acetate
Length = 399
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 84 KSSICIAVKEKLVKDSGVAEERAYD----DIVTKLMTKPRARGVIVFGSDQEVAGVMRAV 139
+S++ + + E++ D+ + ++ +D + +T L T A +V + GV++ +
Sbjct: 23 ESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDM 82
Query: 140 RRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 182
+NA G G + ++ L +G E ++ L P NP
Sbjct: 83 GEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNP 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,202,146
Number of Sequences: 62578
Number of extensions: 1236195
Number of successful extensions: 2564
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2516
Number of HSP's gapped (non-prelim): 30
length of query: 981
length of database: 14,973,337
effective HSP length: 108
effective length of query: 873
effective length of database: 8,214,913
effective search space: 7171619049
effective search space used: 7171619049
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)