Query psy1666
Match_columns 981
No_of_seqs 464 out of 2892
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 18:45:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e4u_A Metabotropic glutamate 100.0 2.6E-54 9E-59 519.8 25.6 183 672-860 365-554 (555)
2 3ks9_A Mglur1, metabotropic gl 100.0 2.9E-42 1E-46 408.6 22.1 294 49-349 175-482 (496)
3 3sm9_A Mglur3, metabotropic gl 100.0 3.5E-41 1.2E-45 397.6 18.4 287 49-349 163-469 (479)
4 3mq4_A Mglur7, metabotropic gl 100.0 2.3E-41 8E-46 399.8 5.4 296 49-349 164-474 (481)
5 3ks9_A Mglur1, metabotropic gl 100.0 2.9E-31 1E-35 314.2 17.1 206 529-787 291-496 (496)
6 3mq4_A Mglur7, metabotropic gl 100.0 5.9E-30 2E-34 302.2 12.9 203 524-778 275-480 (481)
7 3sm9_A Mglur3, metabotropic gl 100.0 1.7E-29 5.9E-34 297.7 14.1 199 525-780 270-477 (479)
8 2e4u_A Metabotropic glutamate 99.9 8.7E-22 3E-26 236.6 18.7 266 4-348 197-469 (555)
9 3qel_B Glutamate [NMDA] recept 99.9 1.2E-22 4.2E-27 230.6 8.1 224 49-348 114-357 (364)
10 4gpa_A Glutamate receptor 4; P 99.8 1.3E-20 4.5E-25 215.2 16.5 240 57-347 116-377 (389)
11 1jdp_A NPR-C, atrial natriuret 99.8 1.3E-20 4.5E-25 219.7 12.6 236 49-342 132-394 (441)
12 3qek_A NMDA glutamate receptor 99.8 8.2E-20 2.8E-24 208.9 13.2 221 49-349 117-376 (384)
13 1dp4_A Atrial natriuretic pept 99.7 9.3E-19 3.2E-23 203.5 6.3 246 51-342 126-396 (435)
14 3o21_A Glutamate receptor 3; p 99.7 1.8E-17 6.3E-22 189.9 16.8 236 58-342 117-373 (389)
15 4f11_A Gamma-aminobutyric acid 99.7 2.3E-17 8E-22 191.6 12.4 242 50-348 133-411 (433)
16 3om0_A Glutamate receptor, ion 99.7 2.4E-16 8.4E-21 180.6 13.2 242 49-342 117-374 (393)
17 3kg2_A Glutamate receptor 2; I 99.7 4.8E-16 1.6E-20 195.6 16.7 240 58-343 108-368 (823)
18 3hsy_A Glutamate receptor 2; l 99.6 8.3E-16 2.9E-20 175.2 14.7 239 58-343 108-368 (376)
19 3saj_A Glutamate receptor 1; r 99.6 4.2E-16 1.4E-20 178.1 11.2 240 58-347 115-376 (384)
20 3h6g_A Glutamate receptor, ion 99.4 5.6E-13 1.9E-17 152.6 10.5 240 51-342 118-376 (395)
21 1dp4_A Atrial natriuretic pept 99.2 9.2E-12 3.2E-16 144.3 5.6 128 627-787 289-419 (435)
22 3qek_A NMDA glutamate receptor 99.1 8.7E-11 3E-15 133.8 8.5 100 673-780 278-384 (384)
23 4gpa_A Glutamate receptor 4; P 99.1 3.7E-10 1.3E-14 128.2 13.2 93 673-772 277-379 (389)
24 1jdp_A NPR-C, atrial natriuret 99.0 3.1E-10 1.1E-14 131.8 9.5 101 674-792 316-433 (441)
25 4eyg_A Twin-arginine transloca 98.9 3.1E-08 1E-12 111.6 18.8 203 72-342 153-359 (368)
26 1usg_A Leucine-specific bindin 98.8 4E-08 1.4E-12 109.6 17.2 183 73-325 153-337 (346)
27 3qel_B Glutamate [NMDA] recept 98.8 3E-09 1E-13 120.2 7.5 97 674-779 261-363 (364)
28 4f11_A Gamma-aminobutyric acid 98.8 7.4E-09 2.5E-13 119.8 9.4 98 674-780 315-420 (433)
29 3td9_A Branched chain amino ac 98.7 1.1E-07 3.6E-12 107.2 16.6 196 73-344 165-364 (366)
30 4evq_A Putative ABC transporte 98.7 2.9E-07 9.8E-12 103.9 17.8 196 72-341 165-362 (375)
31 3ipc_A ABC transporter, substr 98.6 4.1E-07 1.4E-11 101.8 17.6 197 72-341 152-350 (356)
32 3i45_A Twin-arginine transloca 98.6 3.9E-08 1.3E-12 111.8 8.2 198 72-341 156-358 (387)
33 3h5l_A Putative branched-chain 98.6 1.1E-08 3.9E-13 117.6 3.8 186 72-319 178-365 (419)
34 3n0w_A ABC branched chain amin 98.5 6.6E-07 2.3E-11 101.3 13.2 203 72-341 156-362 (379)
35 3hut_A Putative branched-chain 98.5 1.6E-06 5.6E-11 97.0 16.0 195 72-341 153-352 (358)
36 3i09_A Periplasmic branched-ch 98.4 1.3E-06 4.3E-11 98.7 14.4 201 72-341 154-358 (375)
37 3om0_A Glutamate receptor, ion 98.4 1.5E-06 5.2E-11 98.8 13.0 93 673-771 285-381 (393)
38 1pea_A Amidase operon; gene re 98.3 1.1E-05 3.8E-10 91.3 18.8 200 73-340 155-357 (385)
39 3o21_A Glutamate receptor 3; p 98.3 1.9E-06 6.6E-11 98.0 12.4 91 673-769 279-378 (389)
40 4gnr_A ABC transporter substra 98.2 1.6E-05 5.6E-10 88.7 16.3 189 73-335 156-348 (353)
41 3kg2_A Glutamate receptor 2; I 98.1 9.5E-06 3.3E-10 101.6 13.0 92 673-770 273-373 (823)
42 3saj_A Glutamate receptor 1; r 98.0 9.5E-06 3.2E-10 92.0 9.9 95 673-773 276-379 (384)
43 3lkb_A Probable branched-chain 97.9 4.8E-05 1.7E-09 86.1 13.1 203 72-342 157-374 (392)
44 3hsy_A Glutamate receptor 2; l 97.9 1.7E-05 5.9E-10 89.6 8.8 92 673-770 273-373 (376)
45 4f06_A Extracellular ligand-bi 97.9 0.00035 1.2E-08 78.5 18.8 204 72-341 153-361 (371)
46 3lop_A Substrate binding perip 97.8 0.00011 3.9E-09 82.1 14.3 187 72-324 155-348 (364)
47 3eaf_A ABC transporter, substr 97.8 7E-05 2.4E-09 84.8 10.9 204 72-341 156-370 (391)
48 3n0x_A Possible substrate bind 97.8 2.3E-05 8E-10 88.3 6.8 67 250-332 285-352 (374)
49 3snr_A Extracellular ligand-bi 97.7 0.00018 6.3E-09 79.9 13.1 192 72-325 149-354 (362)
50 3sg0_A Extracellular ligand-bi 97.5 0.0002 6.7E-09 80.6 10.1 192 72-325 173-378 (386)
51 3h6g_A Glutamate receptor, ion 97.1 0.00058 2E-08 77.3 7.4 89 674-770 290-382 (395)
52 4evq_A Putative ABC transporte 96.1 0.012 4E-07 65.6 9.1 72 674-764 291-362 (375)
53 4eyg_A Twin-arginine transloca 95.9 0.013 4.5E-07 65.1 8.4 76 674-765 283-359 (368)
54 3td9_A Branched chain amino ac 95.5 0.015 5.2E-07 64.6 6.8 72 674-766 291-363 (366)
55 1usg_A Leucine-specific bindin 95.4 0.011 3.6E-07 65.1 4.8 59 674-748 278-337 (346)
56 3ipc_A ABC transporter, substr 94.9 0.041 1.4E-06 60.7 8.0 72 674-763 277-349 (356)
57 3ckm_A YRAM (HI1655), LPOA; pe 94.1 0.28 9.4E-06 53.5 12.2 86 64-159 127-215 (327)
58 3i09_A Periplasmic branched-ch 93.6 0.081 2.8E-06 58.9 6.6 61 674-750 281-341 (375)
59 3hut_A Putative branched-chain 92.8 0.12 4E-06 57.0 6.4 59 674-748 280-341 (358)
60 3n0w_A ABC branched chain amin 92.6 0.14 4.8E-06 57.0 6.7 62 674-750 284-345 (379)
61 2h4a_A YRAM (HI1655); perplasm 91.5 0.73 2.5E-05 50.3 10.6 84 64-157 125-211 (325)
62 3h5l_A Putative branched-chain 90.5 0.14 4.7E-06 58.0 3.7 61 674-743 306-366 (419)
63 3i45_A Twin-arginine transloca 90.2 0.46 1.6E-05 52.9 7.7 71 674-764 287-358 (387)
64 1du3_A Death receptor 5; trail 88.5 0.23 7.9E-06 46.4 2.9 33 787-824 22-55 (130)
65 4gnr_A ABC transporter substra 87.3 0.56 1.9E-05 51.4 5.7 57 674-748 284-341 (353)
66 3n0x_A Possible substrate bind 87.1 0.79 2.7E-05 50.8 6.8 64 674-753 286-350 (374)
67 1ext_A Tumor necrosis factor r 86.5 0.24 8.3E-06 48.2 1.9 56 787-847 84-143 (162)
68 1pea_A Amidase operon; gene re 86.3 0.63 2.1E-05 51.8 5.5 58 674-747 287-345 (385)
69 3alq_R Tumor necrosis factor r 85.8 0.38 1.3E-05 47.4 2.9 59 787-847 84-150 (173)
70 1ext_A Tumor necrosis factor r 85.4 0.36 1.2E-05 47.0 2.5 44 787-832 17-64 (162)
71 2hey_R Tumor necrosis factor r 85.2 0.45 1.5E-05 45.4 3.1 43 788-832 17-61 (146)
72 2hey_R Tumor necrosis factor r 82.8 0.54 1.9E-05 44.8 2.5 42 792-839 6-51 (146)
73 4f06_A Extracellular ligand-bi 81.6 3.1 0.00011 45.8 8.5 75 674-764 286-361 (371)
74 3lkb_A Probable branched-chain 81.3 0.89 3E-05 50.6 3.9 74 674-764 288-373 (392)
75 3me4_A Tumor necrosis factor r 81.0 0.64 2.2E-05 47.4 2.4 45 787-831 43-88 (216)
76 1jma_B Herpesvirus entry media 80.4 0.53 1.8E-05 46.0 1.4 59 786-846 78-143 (167)
77 4fhq_A Tumor necrosis factor r 79.7 0.84 2.9E-05 42.8 2.5 46 787-832 15-61 (134)
78 3urf_Z Tumor necrosis factor r 79.4 0.87 3E-05 44.6 2.6 45 786-832 16-63 (171)
79 2uwi_A CRME protein; receptor, 78.7 1 3.6E-05 42.6 2.8 54 787-842 79-138 (142)
80 2uwi_A CRME protein; receptor, 78.3 0.94 3.2E-05 42.9 2.4 46 788-833 15-61 (142)
81 3snr_A Extracellular ligand-bi 77.2 2.1 7.1E-05 46.6 5.2 66 674-748 285-354 (362)
82 3tje_F Tumor necrosis factor r 76.3 1.4 4.7E-05 42.4 3.0 46 786-831 40-88 (156)
83 1sg1_X Tumor necrosis factor r 75.5 1.3 4.3E-05 43.0 2.5 56 787-846 77-138 (161)
84 3k51_B Decoy receptor 3; DCR3, 75.0 1.5 5.1E-05 43.1 2.9 54 787-846 84-143 (176)
85 3u3p_A Tumor necrosis factor r 74.2 1.3 4.3E-05 47.4 2.3 48 785-832 21-69 (313)
86 3urf_Z Tumor necrosis factor r 74.1 1.3 4.5E-05 43.3 2.2 54 787-846 82-141 (171)
87 3me4_A Tumor necrosis factor r 73.1 1.8 6E-05 44.1 3.0 56 787-846 109-170 (216)
88 3k51_B Decoy receptor 3; DCR3, 72.6 1.5 5.1E-05 43.2 2.2 48 785-832 17-65 (176)
89 3fl7_A Ephrin receptor; ATP-bi 72.3 2 6.8E-05 50.2 3.6 45 784-837 260-304 (536)
90 1sg1_X Tumor necrosis factor r 72.1 2.1 7.3E-05 41.3 3.2 45 787-832 13-59 (161)
91 4fhq_A Tumor necrosis factor r 71.8 2 7E-05 40.1 2.8 50 791-846 4-59 (134)
92 3u3p_A Tumor necrosis factor r 71.8 1.8 6.1E-05 46.2 2.7 54 787-846 88-147 (313)
93 3alq_R Tumor necrosis factor r 71.8 1.7 5.7E-05 42.7 2.4 41 789-832 21-65 (173)
94 3tje_F Tumor necrosis factor r 68.0 2.2 7.6E-05 41.0 2.2 49 792-846 31-87 (156)
95 1du3_A Death receptor 5; trail 66.9 1.9 6.5E-05 40.1 1.5 58 787-846 39-102 (130)
96 3sg0_A Extracellular ligand-bi 66.8 4.6 0.00016 44.3 4.9 66 674-748 309-378 (386)
97 3qd6_R CD40L receptor, tumor n 66.3 2.1 7.1E-05 42.2 1.7 58 786-846 80-143 (177)
98 3qd6_R CD40L receptor, tumor n 64.1 4.2 0.00014 39.9 3.5 46 787-832 15-61 (177)
99 2ks9_A Substance-P receptor; w 61.2 28 0.00094 37.5 9.9 76 859-941 36-123 (364)
100 1jma_B Herpesvirus entry media 60.7 3 0.0001 40.6 1.6 42 788-831 14-58 (167)
101 1mox_A Epidermal growth factor 58.4 5.3 0.00018 46.1 3.4 10 788-797 235-244 (501)
102 2z73_A Rhodopsin; visual pigme 47.5 67 0.0023 35.7 10.5 73 857-936 36-121 (448)
103 3eml_A Human adenosine A2A rec 42.7 59 0.002 36.3 9.1 74 857-937 23-106 (488)
104 2l69_A Rossmann 2X3 fold prote 37.6 1.8E+02 0.0061 24.6 8.5 72 63-143 3-75 (134)
105 3eaf_A ABC transporter, substr 36.9 61 0.0021 35.3 7.7 69 5-87 154-224 (391)
106 3lop_A Substrate binding perip 32.7 58 0.002 35.0 6.5 69 5-87 153-221 (364)
107 4b2u_A S67; toxin, ICK; NMR {S 32.4 8.5 0.00029 25.4 -0.2 13 801-813 14-26 (36)
108 4dkl_A MU-type opioid receptor 32.1 35 0.0012 38.0 4.8 78 857-941 19-107 (464)
109 4ea3_A Fusion protein of nocic 31.8 86 0.003 34.7 8.0 76 857-939 127-213 (434)
110 3fl7_A Ephrin receptor; ATP-bi 30.5 16 0.00054 42.5 1.5 44 787-836 276-319 (536)
111 3uon_A Human M2 muscarinic ace 30.0 99 0.0034 34.2 8.2 78 857-941 25-114 (467)
112 2rh1_A Beta-2-adrenergic recep 28.7 89 0.003 35.4 7.5 45 856-907 41-85 (500)
113 1n8y_C Protooncoprotein; tyros 26.2 19 0.00065 42.5 1.1 18 814-831 294-313 (608)
114 3v2y_A Sphingosine 1-phosphate 26.0 1.4E+02 0.0047 34.0 8.5 72 857-935 65-147 (520)
115 1lmj_A Fibrillin 1; EGF, calci 24.8 37 0.0013 28.4 2.5 52 793-845 29-86 (86)
116 3rze_A Histamine H1 receptor, 24.4 1.3E+02 0.0043 33.2 7.6 75 857-938 10-96 (452)
117 2hr7_A Insulin receptor; hormo 23.9 24 0.00081 40.5 1.3 13 787-799 235-247 (486)
118 3vw7_A Proteinase-activated re 23.3 1.7E+02 0.006 32.3 8.6 75 857-938 22-108 (484)
119 2jwa_A Receptor tyrosine-prote 22.5 81 0.0028 23.1 3.4 26 860-885 14-39 (44)
120 3ckm_A YRAM (HI1655), LPOA; pe 21.0 59 0.002 34.6 3.7 28 720-748 285-312 (327)
No 1
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.6e-54 Score=519.83 Aligned_cols=183 Identities=35% Similarity=0.706 Sum_probs=154.5
Q ss_pred chhHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhh-hhcccccc------CCCCCeEEeccCCCCcceeeE
Q psy1666 672 QLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQ------GLSEDHFKFDKDGDGPARYNI 744 (981)
Q Consensus 672 ~~~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~-~L~~v~F~------~~~g~~v~Fd~~Gd~~~~YdI 744 (981)
..+++|||||++|||||+|....|+.....|......++|+|++ +|++++|+ |.+|++|.||++||+.+.|||
T Consensus 365 ~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~~y~I 444 (555)
T 2e4u_A 365 KIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNV 444 (555)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCCCEEE
T ss_pred cchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCccceEEE
Confidence 34689999999999999997544543334565544567999999 99999999 999988999999999999999
Q ss_pred EEeEEcCCCcEEEEEEEEEECceEEEeccccccccCCCCCCCccCCccCCCCcEEeeecCcceeeccccCCCCceecCcc
Q psy1666 745 IHFKQIRPGVYQWVQVGEYLEGELRLNMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSD 824 (981)
Q Consensus 745 ~n~~~~~~~~~~~~~VG~~~~~~l~in~~~i~W~~~~~~~P~S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d 824 (981)
+||+. .++...+++||+|+. +|.||+++|.|++ +++|.|+||++|+|||||..++|++|||||+|||+|||+ ||
T Consensus 445 ~~~~~-~~g~~~~~~VG~~~~-~l~i~~~~I~W~~--~~~P~S~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--td 518 (555)
T 2e4u_A 445 FNLQQ-TGGKYSYLKVGHWAE-TLSLDVDSIHWSR--NSVPTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--VD 518 (555)
T ss_dssp EEEEC-TTSSCEEEEEEEESS-SEECCGGGCCCTT--SSCCCCCSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--EE
T ss_pred EEEEe-cCCcEEEEEEEEecc-eEEEeccccccCC--CCCcceeeCCCCCCCeeeeecCCCeeEEECccCCCceec--CC
Confidence 99987 666678999999985 8999999999987 689999999999999999999999999999999999998 89
Q ss_pred ccccccCCCCCCCCccccCcccccccccccchhhHH
Q psy1666 825 ETQCLTCPEGTKPDLLRQNCLEIPAMFIEITSTWAI 860 (981)
Q Consensus 825 ~~~C~~C~~~~~~n~~~~~C~~~~~~~l~~~~~~~i 860 (981)
+++|.+||+++|||++||+|++|+++||+|+||++.
T Consensus 519 ~~~C~~Cp~~~wpn~~~~~C~~k~~~fLsy~d~l~~ 554 (555)
T 2e4u_A 519 EFTCMDCGPGQWPTADLSGCYNLPEDYIKWEDALVP 554 (555)
T ss_dssp TTEEEECCTTEEECTTSSSEEECCC-----------
T ss_pred CccceeCCcccCcCCCcCcccCCCceeccCCCCCCC
Confidence 999999999999999999999999999999999873
No 2
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=2.9e-42 Score=408.58 Aligned_cols=294 Identities=35% Similarity=0.686 Sum_probs=248.2
Q ss_pred HhcCCCCCCCCCcceeeEEeecc-------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHh
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRE-------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM 115 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~-------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li 115 (981)
.|+.|++.+|++||+.++.+++| +.+.+.|+++++++|+||++.+.+|...+ ..++..++.++.
T Consensus 175 frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~---~~d~~~~l~~i~ 251 (496)
T 3ks9_A 175 LRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAG---EKSFDRLLRKLR 251 (496)
T ss_dssp EESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC---HHHHHHHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCC---HHHHHHHHHHHH
Confidence 35889999999999999999988 55778999999999999999999985433 346677788876
Q ss_pred cC-CCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcC
Q psy1666 116 TK-PRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194 (981)
Q Consensus 116 ~~-s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~ 194 (981)
+. ++|+||++++....+..++.++.+.+++++++||++++|.............++|++++++++.++|||++|+++++
T Consensus 252 ~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k~~~i~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~ 331 (496)
T 3ks9_A 252 ERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLR 331 (496)
T ss_dssp TTTTTTCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCC
T ss_pred hccCceEEEEEecChHHHHHHHHHHHHhCCCCcEEEEEechhccccccccccccccCceEEEeccCCcCcchHhHhccCC
Confidence 54 78999999999988999999999999999768999999987543333344668999999999999999999999999
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCC
Q psy1666 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQG 274 (981)
Q Consensus 195 p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~ 274 (981)
|.++|+|+|+++ ||+..|+|.++.... ......+.|+++|+++.... ....+++||+||||||||||+|+.+.|+.
T Consensus 332 p~~~p~d~~l~~-~W~~~f~C~~~~~~~--~~~~~~~~C~~~~~l~~~~~-~~~~~~~vy~AVyavAhALh~m~~~~~~~ 407 (496)
T 3ks9_A 332 LDTNTRNPWFPE-FWQHRFQCRLPGHLL--ENPNFKRICTGNESLEENYV-QDSKMGFVINAIYAMAHGLQNMHHALCPG 407 (496)
T ss_dssp TTTCCSCTTHHH-HHHHHTTCBCCC-------CCCSSBCCSCCCTTTTCC-CCTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred cCCCCCCHHHHH-HHHHHcCCCCCCCcc--ccccccCCCCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999 999999998754211 01112367999999975432 33455689999999999999999888987
Q ss_pred CCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEECCeEEEec
Q psy1666 275 KVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349 (981)
Q Consensus 275 ~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~~~L~in~ 349 (981)
..+.|..+.+.+||||++|||||+|++.+|++|+||++||+++.|||+||+..+++...+++||+|+.++|.||+
T Consensus 408 ~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~~~l~i~~ 482 (496)
T 3ks9_A 408 HVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDD 482 (496)
T ss_dssp CSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--CEEEEEEEEEETTEEEECT
T ss_pred CCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCCCEEEEEEEEEeCCeEEEeh
Confidence 778899887889999999999999999999999999999999999999999989899999999999977888864
No 3
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=3.5e-41 Score=397.63 Aligned_cols=287 Identities=33% Similarity=0.602 Sum_probs=243.3
Q ss_pred HhcCCCCCCCCCcceeeEEeecc-------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHh
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRE-------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM 115 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~-------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li 115 (981)
.|+.|++.+|.+||+.++.+++| +.+.+.|+++++++|+||++.+.++.... ..++...+.+++
T Consensus 163 fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~---~~d~~~~l~~~i 239 (479)
T 3sm9_A 163 ARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNI---RKSYDSVIRELL 239 (479)
T ss_dssp EESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--C---HHHHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCC---hHHHHHHHHHHH
Confidence 35889999999999999999998 45678999999999999999999986432 235666675666
Q ss_pred cCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCC
Q psy1666 116 TKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTV 195 (981)
Q Consensus 116 ~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p 195 (981)
++++++|||+++...++..++.++.+.+++ + +||++++|.............++|+|++++++.++|||++|+++++|
T Consensus 240 ~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~-~-~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p 317 (479)
T 3sm9_A 240 QKPNARVVVLFMRSDDSRELIAAASRANAS-F-TWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNP 317 (479)
T ss_dssp TCTTCCEEEEECCHHHHHHHHHHHHHTTCC-C-EEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTCCT
T ss_pred hcCCCeEEEEEcChHHHHHHHHHHHHhCCE-E-EEEEechhhcCccccccccccCceEEEEEeccCCCcchhhHhhccCc
Confidence 888999999999999999999999988887 4 99999999875322223345679999999999999999999999999
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCC
Q psy1666 196 ENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGK 275 (981)
Q Consensus 196 ~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~ 275 (981)
.++|+|+|+.+ ||+..|+|.++... ...+.|+++|+++...+...+.+++|||||||||||||+|+.+.|+..
T Consensus 318 ~~~p~d~~~~~-~w~~~f~C~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~ 390 (479)
T 3sm9_A 318 YNNHRNPWFRD-FWEQKFQCSLQNKR------NHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNT 390 (479)
T ss_dssp TTCTTCTTHHH-HHHHHHTCBCCC---------CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred CcCCCCHHHHH-HHHHHcCCCCCCCc------ccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999 99999999875431 123679999999766554455678999999999999999998889877
Q ss_pred CCCCCCCCCCCccHHH-HhhcceeeccC------CCCeEEecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEECCeEEEe
Q psy1666 276 VGLCDAMRPTKGPELL-KYLRKVSFQGL------SEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348 (981)
Q Consensus 276 ~~~C~~~~~~~~~qLl-~~Lk~V~F~g~------~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~~~L~in 348 (981)
.+.|..+...+||||+ +|||||+|++. +|++|+||+|||+++.|||+||+.. +|...+++||+|+ ++|.||
T Consensus 391 ~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI~n~~~~-~~~~~~~~VG~~~-~~l~i~ 468 (479)
T 3sm9_A 391 TKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNV-GGKYSYLKVGHWA-ETLSLD 468 (479)
T ss_dssp SSCCHHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEEEEEEES-SSCEEEEEEEEES-SSEEEC
T ss_pred CcCCCCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEEEEEEEC-CCcEEEEEEEEEe-ceEEEe
Confidence 7788877678999999 99999999998 8999999999999999999999986 7889999999997 578776
Q ss_pred c
Q psy1666 349 M 349 (981)
Q Consensus 349 ~ 349 (981)
+
T Consensus 469 ~ 469 (479)
T 3sm9_A 469 V 469 (479)
T ss_dssp G
T ss_pred c
Confidence 3
No 4
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.3e-41 Score=399.76 Aligned_cols=296 Identities=31% Similarity=0.604 Sum_probs=206.7
Q ss_pred HhcCCCCCCCCCcceeeEEeecc-------------hhHHHHHHHHHHh-CCeeEEEEEEeecCCcchhhhhHHHHHHHH
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRE-------------TTAFEELEVLLAK-SSICIAVKEKLVKDSGVAEERAYDDIVTKL 114 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~-------------~~~~~~l~~~~~~-~gICIA~~~~ip~~~~~~~~~~~~~ii~~l 114 (981)
.|+.|++.+|.+||+.++.+++| +.+.+.|++++++ .|+||++.+.+|..... ...++...+.++
T Consensus 164 fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~-~~~d~~~~l~~i 242 (481)
T 3mq4_A 164 SRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKD-RTIDFDRIIKQL 242 (481)
T ss_dssp EESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC-------CCSHHHHCC
T ss_pred EEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCcc-chHHHHHHHHHH
Confidence 35889999999999999999998 3456677776664 79999999999854321 111445566666
Q ss_pred hcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcC
Q psy1666 115 MTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194 (981)
Q Consensus 115 i~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~ 194 (981)
+++++++|||+++...++..++.++.+.+++++++||++++|.............++|++++.+++.++|||++|+++++
T Consensus 243 ~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~ 322 (481)
T 3mq4_A 243 LDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRT 322 (481)
T ss_dssp CCC----CEEECCCSSHHHHHC----------CCCEEEC-----------------CCCEEEEECCCCCHHHHHHHHTCC
T ss_pred HhcCCCEEEEEEEChHHHHHHHHHHHHccCCcceEEEEECccccccccccccchhhccEEEEecCcCccccHHHHhhcCC
Confidence 44678999999999999999999998889988559999999986543333345678999999999999999999999999
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc-cccccccHHHHHHHHHHHHHHHHhHhhhcC
Q psy1666 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQ 273 (981)
Q Consensus 195 p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~-~~~~~~~~~VydAVyAiAhALh~m~~~lC~ 273 (981)
|.++|+|+|+++ ||+..|+|.++.... ......+.||++|+++... +.....+++|||||||+|||||+|+.+.|+
T Consensus 323 p~~~p~d~~~~~-~w~~~f~C~~~~~~~--~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~ 399 (481)
T 3mq4_A 323 LENNRRNVWFAE-YWEENFNCKLTISGS--KKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCA 399 (481)
T ss_dssp TTTCTTCTTHHH-HHHHHHTCCC--------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCCCHHHHH-HHHHhcCCCCCCccc--cccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999 999999998753210 0011236799999997543 233356678999999999999999988887
Q ss_pred CCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEECCeEEEec
Q psy1666 274 GKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349 (981)
Q Consensus 274 ~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~~~L~in~ 349 (981)
...+.|..+.+.+||||++|||||+|++.+|++|+||+|||+++.|||+||+..+++...+++||+|+ ++|.||+
T Consensus 400 ~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~~~~~~~~~~VG~~~-~~l~i~~ 474 (481)
T 3mq4_A 400 DYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWT-DELQLNI 474 (481)
T ss_dssp ----CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC-----CCCEEEEEEEE-TTEEEEC
T ss_pred CCCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEECCCCcEEEEEEEEEc-CccEecc
Confidence 66678887767899999999999999999999999999999999999999998766667899999998 4677753
No 5
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.97 E-value=2.9e-31 Score=314.20 Aligned_cols=206 Identities=38% Similarity=0.767 Sum_probs=160.5
Q ss_pred cCccccccccCCccceeeeEEEeeecCCCCcchhhcccccCccCCCCCcccccccceeeeeeeccCcchhhhhhhhcchh
Q psy1666 529 DGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVVFRVILDKPRNMLRARVAAGIV 608 (981)
Q Consensus 529 ~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i~~f~~fl~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (981)
++|+....+.....+.++|+|+|+++..++|+|++|+++++|.++|+|+|
T Consensus 291 ~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~------------------------------ 340 (496)
T 3ks9_A 291 DGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPW------------------------------ 340 (496)
T ss_dssp TTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTT------------------------------
T ss_pred chhccccccccccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHH------------------------------
Confidence 88987654444445678999999999999999999999999999988884
Q ss_pred hhhhhcccccCCCCCchhhHHHHHHhcCCCcCCCCCCCCCCCCCCCCCCCcccccCCccccccchhHHHHHHHHHHHHHH
Q psy1666 609 SIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALD 688 (981)
Q Consensus 609 ~~~~~~~~~~~~~~p~~~~l~efWe~~f~C~~~~~~~~~~~~~~~~~Ctg~e~L~~~~~~~~~~~~~vydAVyaiAhALh 688 (981)
+++||+..|+|+++..... +....+.|+++|+|+... ..+..+++||+||||+|||||
T Consensus 341 -------------------l~~~W~~~f~C~~~~~~~~--~~~~~~~C~~~~~l~~~~-~~~~~~~~vy~AVyavAhALh 398 (496)
T 3ks9_A 341 -------------------FPEFWQHRFQCRLPGHLLE--NPNFKRICTGNESLEENY-VQDSKMGFVINAIYAMAHGLQ 398 (496)
T ss_dssp -------------------HHHHHHHHTTCBCCC-------CCCSSBCCSCCCTTTTC-CCCTTHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHcCCCCCCCccc--cccccCCCCCcccccccc-cccchHHHHHHHHHHHHHHHH
Confidence 6899999999987643210 011225799999997532 223345689999999999999
Q ss_pred HhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEcCCCcEEEEEEEEEECceE
Q psy1666 689 HMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGEL 768 (981)
Q Consensus 689 ~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~~~l 768 (981)
+|+.+.|+...+.|..+....||||++|||+|+|++.+|++|+||++||+.+.|||+|||..+++...+++||+|++++|
T Consensus 399 ~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~~~l 478 (496)
T 3ks9_A 399 NMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVL 478 (496)
T ss_dssp HHHHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCCEEEEEEEEECC--CEEEEEEEEEETTEE
T ss_pred HHHhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccceEEEEEEEECCCCCEEEEEEEEEeCCeE
Confidence 99876676555678766667899999999999999999999999999999999999999998999999999999998899
Q ss_pred EEeccccccccCCCCCCCc
Q psy1666 769 RLNMSAIQFKLSHPSPPES 787 (981)
Q Consensus 769 ~in~~~i~W~~~~~~~P~S 787 (981)
.||+++| |.++.+++|++
T Consensus 479 ~i~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 479 NIDDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EECTTTC------------
T ss_pred EEehhhc-ccCCCCCCCCC
Confidence 9999999 76666778864
No 6
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.96 E-value=5.9e-30 Score=302.17 Aligned_cols=203 Identities=36% Similarity=0.696 Sum_probs=142.4
Q ss_pred CCccc--cCccccccccCCccceeeeEEEeeecCCCCcchhhcccccCccCCCCCcccccccceeeeeeeccCcchhhhh
Q psy1666 524 PKVRS--DGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVVFRVILDKPRNMLRA 601 (981)
Q Consensus 524 PK~~~--~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i~~f~~fl~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (981)
+|++| ++|+..........+.++|+|+|.++..++|+|++|+++++|.++|+|+|
T Consensus 275 ~~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~----------------------- 331 (481)
T 3mq4_A 275 HFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVW----------------------- 331 (481)
T ss_dssp CCCEEEC-----------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTT-----------------------
T ss_pred ceEEEEECccccccccccccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHH-----------------------
Confidence 35666 88986554444446779999999999999999999999999999988884
Q ss_pred hhhcchhhhhhhcccccCCCCCchhhHHHHHHhcCCCcCCCCCCCCCCCCCCCCCCCcccccCCcc-ccccchhHHHHHH
Q psy1666 602 RVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTL-AFEKQLQFVSDAV 680 (981)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~efWe~~f~C~~~~~~~~~~~~~~~~~Ctg~e~L~~~~~-~~~~~~~~vydAV 680 (981)
+++||+..|+|+++..... .....+.|+++|+++.... ..+..+++||+||
T Consensus 332 --------------------------~~~~w~~~f~C~~~~~~~~--~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AV 383 (481)
T 3mq4_A 332 --------------------------FAEYWEENFNCKLTISGSK--KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAV 383 (481)
T ss_dssp --------------------------HHHHHHHHHTCCC--------------CCCSCCCTTTSSCCCCCTTHHHHHHHH
T ss_pred --------------------------HHHHHHHhcCCCCCCcccc--ccccCCCCCCccccCcCCcccccchhhhHHHHH
Confidence 6899999999987543210 0011246999999975332 2223557899999
Q ss_pred HHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEcCCCcEEEEEE
Q psy1666 681 MAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQV 760 (981)
Q Consensus 681 yaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~~~~~~~V 760 (981)
||+|||||+|+.+.|+...+.|.......||||++|||+++|++.+|++|+||++||+.+.|||+|||..+++...+++|
T Consensus 384 yavA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~~YdI~n~~~~~~~~~~~~~V 463 (481)
T 3mq4_A 384 YAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLI 463 (481)
T ss_dssp HHHHHHHHHHHHHHCC----CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCCEEEEEEEC-----CCCEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCceeEEEEEEEECCCCcEEEEEE
Confidence 99999999998766765445676544568999999999999999999999999999999999999999866666788999
Q ss_pred EEEECceEEEeccccccc
Q psy1666 761 GEYLEGELRLNMSAIQFK 778 (981)
Q Consensus 761 G~~~~~~l~in~~~i~W~ 778 (981)
|+|+ ++|.||+++|.|+
T Consensus 464 G~~~-~~l~i~~~~i~W~ 480 (481)
T 3mq4_A 464 GQWT-DELQLNIEDMQWG 480 (481)
T ss_dssp EEEE-TTEEEECSCC---
T ss_pred EEEc-CccEecccccccC
Confidence 9998 5899999999996
No 7
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=297.73 Aligned_cols=199 Identities=35% Similarity=0.692 Sum_probs=161.9
Q ss_pred Cccc--cCccccccccCCccceeeeEEEeeecCCCCcchhhcccccCccCCCCCcccccccceeeeeeeccCcchhhhhh
Q psy1666 525 KVRS--DGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVVFRVILDKPRNMLRAR 602 (981)
Q Consensus 525 K~~~--~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i~~f~~fl~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (981)
|++| ++|+............++|+|+|.++..++|+|++|+++++|.++|+|+|
T Consensus 270 ~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~------------------------ 325 (479)
T 3sm9_A 270 FTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPW------------------------ 325 (479)
T ss_dssp CEEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTT------------------------
T ss_pred EEEEEechhhcCccccccccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHH------------------------
Confidence 5555 88987543333344678999999999999999999999999999998885
Q ss_pred hhcchhhhhhhcccccCCCCCchhhHHHHHHhcCCCcCCCCCCCCCCCCCCCCCCCcccccCCccccccchhHHHHHHHH
Q psy1666 603 VAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMA 682 (981)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~p~~~~l~efWe~~f~C~~~~~~~~~~~~~~~~~Ctg~e~L~~~~~~~~~~~~~vydAVya 682 (981)
+++||+..|+|++++... ..+.|+++|+|+...+.....+++||+||||
T Consensus 326 -------------------------~~~~w~~~f~C~~~~~~~------~~~~C~~~~~l~~~~~~~~~~~~~vy~AVya 374 (479)
T 3sm9_A 326 -------------------------FRDFWEQKFQCSLQNKRN------HRRVCDKHLAIDSSNYEQESKIMFVVNAVYA 374 (479)
T ss_dssp -------------------------HHHHHHHHHTCBCCC---------CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHcCCCCCCCcc------cccCCCCccccccCccccccchhhHHHHHHH
Confidence 589999999998865321 1256999999975433222345799999999
Q ss_pred HHHHHHHhHHhhccCCCCCCCCCCCCChhhHh-hhhccccccCC------CCCeEEeccCCCCcceeeEEEeEEcCCCcE
Q psy1666 683 FSIALDHMHADLCQGKVGLCDAMRPTKGPELL-KYLRKVSFQGL------SEDHFKFDKDGDGPARYNIIHFKQIRPGVY 755 (981)
Q Consensus 683 iAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~-~~L~~v~F~~~------~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~~~ 755 (981)
+|||||+|+...|+...+.|.......||||+ +|||+++|++. +|++|+||++||+.+.|||+||+.. ++..
T Consensus 375 vA~ALh~m~~~~~~~~~~~c~~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~~YdI~n~~~~-~~~~ 453 (479)
T 3sm9_A 375 MAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNFQNV-GGKY 453 (479)
T ss_dssp HHHHHHHHHHHHSTTCSSCCHHHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCCCEEEEEEEES-SSCE
T ss_pred HHHHHHHHHHhhcCCCCcCCCCCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcccceEEEEEEEC-CCcE
Confidence 99999999876786555567654456899999 99999999998 8999999999999999999999986 7888
Q ss_pred EEEEEEEEECceEEEeccccccccC
Q psy1666 756 QWVQVGEYLEGELRLNMSAIQFKLS 780 (981)
Q Consensus 756 ~~~~VG~~~~~~l~in~~~i~W~~~ 780 (981)
.+++||+|+ ++|.||+++|.|+++
T Consensus 454 ~~~~VG~~~-~~l~i~~~~I~W~~~ 477 (479)
T 3sm9_A 454 SYLKVGHWA-ETLSLDVNSIHWSRN 477 (479)
T ss_dssp EEEEEEEES-SSEEECGGGCCCC--
T ss_pred EEEEEEEEe-ceEEEecceeEeCCC
Confidence 999999998 689999999999864
No 8
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.87 E-value=8.7e-22 Score=236.58 Aligned_cols=266 Identities=36% Similarity=0.646 Sum_probs=213.2
Q ss_pred cchhhHHHHHHHHHhhcCeEEEEeeeeccCCcccccchHHHHHHHHhcCCCCCCCCCcceeeEEeecchhHHHHHHHHHH
Q psy1666 4 LCYYIAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARDDPDFIPVLMLFLRETTAFEELEVLLA 83 (981)
Q Consensus 4 ~~~~~g~~~~~~~~~~~~~Cia~~~~i~~~~~~~~~~~~~~i~~~l~~~psa~~q~~a~~~lv~f~~~~~~~~~l~~~~~ 83 (981)
+++..+.++|++++++.|+||++.++++.+.. ..+|..++++|+.
T Consensus 197 ~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~---~~~~~~~l~~i~~-------------------------------- 241 (555)
T 2e4u_A 197 DYGETGIEAFEQEARLRNICIATAEKVGRSNI---RKSYDSVIRELLQ-------------------------------- 241 (555)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEEEEECTTCC---HHHHHHHHHHHHT--------------------------------
T ss_pred hHHHHHHHHHHHHHHHCCccEEEEEEeCCCCC---hHHHHHHHHHHhc--------------------------------
Confidence 47888999999999999999999999986433 2245554554422
Q ss_pred hCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEEeccCccccccc
Q psy1666 84 KSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVS 163 (981)
Q Consensus 84 ~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~s~~W~~~~~~~ 163 (981)
+++++|||+++...++..++.++.++++ + ++||++++|.......
T Consensus 242 ---------------------------------~s~a~vIi~~~~~~~~~~~~~~~~~~g~-~-~~~i~s~~~~~~~~~~ 286 (555)
T 2e4u_A 242 ---------------------------------KPNARVVVLFMRSDDSRELIAAANRVNA-S-FTWVASDGWGAQESIV 286 (555)
T ss_dssp ---------------------------------CTTCCEEEEECCHHHHHHHHHHHHHTTC-C-CEEEECTTTTTCGGGT
T ss_pred ---------------------------------cCCCCEEEEEcCHHHHHHHHHHHHHhcC-C-eEEEEeccccccchhh
Confidence 2345788888888888888888888777 6 5999999998765433
Q ss_pred CCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCc
Q psy1666 164 DGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDT 243 (981)
Q Consensus 164 ~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~ 243 (981)
......++|++++.++..++|+|++|+.+++|.++++|+|+.+ +|+..|+|.++... ...+.|+++|+++...
T Consensus 287 ~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~-~w~~~f~c~~~~~~------~~~~~C~~~e~l~~~~ 359 (555)
T 2e4u_A 287 KGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRD-FWEQKFQCSLQNKR------NHRQVCDKHLAIDSSN 359 (555)
T ss_dssp TTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHH-HHHHHTTCCCC------------CCCCTTCCCCTTT
T ss_pred ccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHH-HHHHHcCCCCCCCC------ccCCCCCCcccccccc
Confidence 3334567899999999999999999999999999999999999 99999999754321 1124799999987654
Q ss_pred cccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHH-hhcceeec------cCCCCeEEecCCCCCC
Q psy1666 244 LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQ------GLSEDHFKFDKDGDGP 316 (981)
Q Consensus 244 ~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~-~Lk~V~F~------g~~G~~V~FD~nGD~~ 316 (981)
+......+++|||||++|||||+|..+.|+...+.|..+...+||+|++ +|++++|+ |.+|++|.||++||+.
T Consensus 360 ~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~ 439 (555)
T 2e4u_A 360 YEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM 439 (555)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc
Confidence 3334467789999999999999998766765556787766788999999 99999999 9999999999999999
Q ss_pred ceeEEEEEEEcCCCcEEEEEEEEEECCeEEEe
Q psy1666 317 ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348 (981)
Q Consensus 317 ~~YdI~n~q~~~~g~~~~v~VG~~~~~~L~in 348 (981)
+.|||+||+. .+|...+++||+|++ +|.||
T Consensus 440 ~~y~I~~~~~-~~g~~~~~~VG~~~~-~l~i~ 469 (555)
T 2e4u_A 440 GRYNVFNLQQ-TGGKYSYLKVGHWAE-TLSLD 469 (555)
T ss_dssp CCEEEEEEEC-TTSSCEEEEEEEESS-SEECC
T ss_pred ceEEEEEEEe-cCCcEEEEEEEEecc-eEEEe
Confidence 9999999986 667778999999974 66654
No 9
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.86 E-value=1.2e-22 Score=230.62 Aligned_cols=224 Identities=15% Similarity=0.257 Sum_probs=164.8
Q ss_pred HhcCCCCCCCCCcceeeEEeecch---------hHHHHHHHHHHhC--C--eeEEEEEEeecCCcchhhhhHHHHHHHHh
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRET---------TAFEELEVLLAKS--S--ICIAVKEKLVKDSGVAEERAYDDIVTKLM 115 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~~---------~~~~~l~~~~~~~--g--ICIA~~~~ip~~~~~~~~~~~~~ii~~li 115 (981)
+|+.|++.+|++||+.++.+|+|. .+.+.|.+++++. | +||++.+.++.+.+ ..++...+++.+
T Consensus 114 ~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~~g~~~~~~~l~~~~~~~~ici~~~~~i~~~~~---~~~~~~~l~~~i 190 (364)
T 3qel_B 114 FQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMS---LDDGDSKIQNQL 190 (364)
T ss_dssp EESSCCHHHHHHHHHHHHHHTTCCEEEEEEESCTTHHHHHHHHHHHHHTCSSCCEEEEEEEECTT---SCSSSCHHHHHH
T ss_pred EEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCCccHHHHHHHHHHHhhccccceEEEEEEccCCC---cccHHHHHHHHH
Confidence 458899999999999999999992 3445555555443 4 59999999986443 123444553345
Q ss_pred cCCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcC
Q psy1666 116 TKPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194 (981)
Q Consensus 116 ~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~ 194 (981)
++++++|||++++...+..++.++.+.+++++ ++||+++.|........ .....|.++++++.
T Consensus 191 ~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~~--~~~~~g~~~~~~~~-------------- 254 (364)
T 3qel_B 191 KKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVP--SEFPTGLISVSYDE-------------- 254 (364)
T ss_dssp TTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCCC--TTSCTTCEECCBCT--------------
T ss_pred HccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCccccc--ccCCCceEEEeecc--------------
Confidence 77889999999999999999999999999885 79999988742211100 11123444433311
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhh--hc
Q psy1666 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHAD--LC 272 (981)
Q Consensus 195 p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~--lC 272 (981)
|+. ....++|||||++|||+|+|+++ .|
T Consensus 255 --------------W~~------------------------------------~~~~~~yDaV~~~A~A~~~~~~~~~~i 284 (364)
T 3qel_B 255 --------------WDY------------------------------------GLPARVRDGIAIITTAASDMLSEHSFI 284 (364)
T ss_dssp --------------TTS------------------------------------CHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred --------------chh------------------------------------hHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 110 02357999999999999999874 36
Q ss_pred CCCCCCCCCCCC---CCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEECCeEEEe
Q psy1666 273 QGKVGLCDAMRP---TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348 (981)
Q Consensus 273 ~~~~~~C~~~~~---~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~~~L~in 348 (981)
+...+.|..+.. ..|.+|++||++++|+|. ++.||++|++. ..|||+|++. . ..+++||+|+++.|.++
T Consensus 285 ~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl---~i~F~~~G~~~~~~~~Iinl~~-~---~~~~~VG~W~~~~L~~~ 357 (364)
T 3qel_B 285 PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR---DLSFSEDGYQMHPKLVIILLNK-E---RKWERVGKWKDKSLQMK 357 (364)
T ss_dssp CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE---ECCBCTTSSBSSCCEEEEEECT-T---SCEEEEEEECSSCEEES
T ss_pred CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc---eEEECCCCCcccceEEEEEEcC-C---CCcEEEEEECCCeEEeC
Confidence 666778987652 478899999999999875 89999999997 6999999973 1 25899999998778775
No 10
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.84 E-value=1.3e-20 Score=215.17 Aligned_cols=240 Identities=11% Similarity=0.120 Sum_probs=168.4
Q ss_pred CCCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEE
Q psy1666 57 DDPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVI 124 (981)
Q Consensus 57 ~q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIV 124 (981)
.|.+||+.++.+++| ..+.+.+.+++.+.|+||++.+..+.. ..++...++++ +.+++++|+
T Consensus 116 ~~~~a~~~l~~~~~w~~vaii~~~d~~~~~~~~~~~~~~~~g~~v~~~~~~~~~-----~~d~~~~l~~i-~~~~~~vIv 189 (389)
T 4gpa_A 116 SLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFN-----DVSYRQLLEEL-DRRQEKKFV 189 (389)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHHTTTCEEEEEECTTCC-----HHHHHHHHHHH-HHHTCCEEE
T ss_pred CHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHhcCceEEEEeecCCc-----chhHHHHHHHh-hccCCcEEE
Confidence 356788888888887 335677888888999999988765533 23566667665 556789999
Q ss_pred EEcchhhHHHHHHHHHhhccCC-ceEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCc
Q psy1666 125 VFGSDQEVAGVMRAVRRLNATG-SFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPW 203 (981)
Q Consensus 125 l~~s~~~a~~~~~~~~~~~l~g-~~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~ 203 (981)
+++....+..+++++.+.++.+ .++||.++.|....... .......+..++.+.....|.+++|.+
T Consensus 190 ~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~f~~------------ 256 (389)
T 4gpa_A 190 IDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLE-RFIHGGANVTGFQLVDFNTPMVTKLMD------------ 256 (389)
T ss_dssp EECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCCH-HHHHHBCEEEEEECSCTTSHHHHHHHH------------
T ss_pred EEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhhh-hhhhcccceEEEEeecCCChHHHHHHH------------
Confidence 9999999999999999988865 37999988776443321 112233577888887777788888875
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCC----CCCCC
Q psy1666 204 FVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQG----KVGLC 279 (981)
Q Consensus 204 ~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~----~~~~C 279 (981)
.|+..+++..... .........++|||||++|||||+|+++.+.. ....|
T Consensus 257 ----~~~~~~~~~~~~~----------------------~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~ 310 (389)
T 4gpa_A 257 ----RWKKLDQREYPGS----------------------ETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDC 310 (389)
T ss_dssp ----HHTTSCTTTSTTT----------------------TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCT
T ss_pred ----HHHHHhhhhcccC----------------------CCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 3443333321100 00112245689999999999999999754421 12233
Q ss_pred CCC--CC-CCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEECC-eEEE
Q psy1666 280 DAM--RP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEG-ELRL 347 (981)
Q Consensus 280 ~~~--~~-~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~~-~L~i 347 (981)
... .+ .+|.+|+++|++++|+|.+| +|.||++||+. ..|||+|++. + .+++||+|++. .|.+
T Consensus 311 ~~~~~~~~~~G~~l~~~l~~v~f~G~tG-~v~Fd~~G~r~~~~~~I~~l~~---~--~~~~VG~W~~~~gl~~ 377 (389)
T 4gpa_A 311 LANPAAPWGQGIDMERTLKQVRIQGLTG-NVQFDHYGRRVNYTMDVFELKS---T--GPRKVGYWNDMDKLVL 377 (389)
T ss_dssp TCSSCCCCTTHHHHHHHHHTCEEEETTE-EEEBCTTSCBCSCEEEEEEEET---T--EEEEEEEEETTTEEEE
T ss_pred ccCCCcccchHHHHHHHHHhCceecCce-eEEECCCCCCCCCEEEEEEEEC---C--EEEEEEEEECCCCeEE
Confidence 322 22 13457999999999999999 69999999986 5899999973 2 48999999973 4543
No 11
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.82 E-value=1.3e-20 Score=219.68 Aligned_cols=236 Identities=13% Similarity=0.251 Sum_probs=174.9
Q ss_pred HhcCCCCCCCCCcceeeEEeecc-------------hh---HHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHH
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRE-------------TT---AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVT 112 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~-------------~~---~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~ 112 (981)
+|+.|++..|.++|+.++.+++| +. ..+.|+++++++|+||++.+.++.... ++...++
T Consensus 132 fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-----d~~~~l~ 206 (441)
T 1jdp_A 132 TRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDL-----DLEDIVR 206 (441)
T ss_dssp EECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCC-----CHHHHHH
T ss_pred EEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCccc-----CHHHHHH
Confidence 34778888899999988888877 34 778889999999999999988764322 4566777
Q ss_pred HHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEec----------cCcccccccCCCccceeeEEEEEecCC
Q psy1666 113 KLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSD----------GWSARGLVSDGSEAEVEGTLSLQPQAN 181 (981)
Q Consensus 113 ~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~----------~W~~~~~~~~~~~~~~~G~l~~~~~~~ 181 (981)
++ + ++++||++++...++..+++++.+.++.++ ++||+++ .|..............+++.|+.++..
T Consensus 207 ~i-~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~ 284 (441)
T 1jdp_A 207 NI-Q-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRT 284 (441)
T ss_dssp HH-H-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCC
T ss_pred Hh-h-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCC
Confidence 76 4 788999999999999999999988888774 7888988 675432211100012345667777777
Q ss_pred CCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHH
Q psy1666 182 PVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFS 261 (981)
Q Consensus 182 ~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiA 261 (981)
.+|+|++|++..++. +.+ + .|+ . +. . ......++|||||++|
T Consensus 285 ~~p~~~~F~~~~~~~-------~~~-~---~~~----~-----------------~~----~--~~~~~~~~YdAv~~~A 326 (441)
T 1jdp_A 285 VKPEFEKFSMEVKSS-------VEK-Q---GLN----M-----------------ED----Y--VNMFVEGFHDAILLYV 326 (441)
T ss_dssp CCHHHHHHHHHHHHH-------HHT-T---TCC----C-----------------CS----S--CCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH-------Hhh-C---CCC----c-----------------cc----h--hhhHHHHHHHHHHHHH
Confidence 899999999876432 111 1 011 0 00 0 0112457999999999
Q ss_pred HHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 262 IALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 262 hALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
||||++++ |. .+ ..++++|+++|++++|.|.+| +|.||++||+.+.|+|+||+..++| .+++||+|+
T Consensus 327 ~Al~~~~~--~~----~~----~~~~~~l~~~l~~~~f~g~~G-~v~fd~~Gd~~~~~~I~~~~~~~~g--~~~~VG~~~ 393 (441)
T 1jdp_A 327 LALHEVLR--AG----YS----KKDGGKIIQQTWNRTFEGIAG-QVSIDANGDRYGDFSVIAMTDVEAG--TQEVIGDYF 393 (441)
T ss_dssp HHHHHHHH--TT----CC----TTCHHHHHHHHSSEEEEETTE-EEEECTTSBBCCEEEEEEEEETTTT--EEEEEEEEE
T ss_pred HHHHHHHH--hC----CC----CCCHHHHHHHHhCCeeECCcc-ceEECCCCCccccEEEEecccCCCC--ceEEEEEEc
Confidence 99999985 21 11 257899999999999999888 6999999999999999999987777 589999998
Q ss_pred C
Q psy1666 342 E 342 (981)
Q Consensus 342 ~ 342 (981)
+
T Consensus 394 ~ 394 (441)
T 1jdp_A 394 G 394 (441)
T ss_dssp T
T ss_pred C
Confidence 6
No 12
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.80 E-value=8.2e-20 Score=208.93 Aligned_cols=221 Identities=19% Similarity=0.261 Sum_probs=162.7
Q ss_pred HhcCCCCCCCCCcceeeEEeecc-------------hhHHHHHHHHHHhCCe-----------eEEEE-------EEeec
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRE-------------TTAFEELEVLLAKSSI-----------CIAVK-------EKLVK 97 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~-------------~~~~~~l~~~~~~~gI-----------CIA~~-------~~ip~ 97 (981)
+|+.|++.+|+++|+.++.+++| +.+.+.|+++++++|+ ||+|. +.++.
T Consensus 117 fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~ 196 (384)
T 3qek_A 117 LRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQ 196 (384)
T ss_dssp EESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEE
T ss_pred EEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccccceeeeccccCcccceecc
Confidence 34789999999999999998887 3456788888888886 88876 66653
Q ss_pred CCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEE
Q psy1666 98 DSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSL 176 (981)
Q Consensus 98 ~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~ 176 (981)
... ...++...+.++ +.++++||+++++...+..+++++.+++++|+ ++||+++.|..... .....+|++|+
T Consensus 197 ~~~--~~~d~~~~l~~i-~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~----~~~~~~g~lg~ 269 (384)
T 3qek_A 197 FEP--GTKNLTALLLEA-KELEARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSA----LRYAPDGIIGL 269 (384)
T ss_dssp ECT--TCSCCHHHHHHH-HTSSCCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGGG----GSSCCTTCEEE
T ss_pred cCC--chhhHHHHHHHH-HhcCCcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEecccccccc----ccccCCccEEE
Confidence 211 123566777776 67889999999999999999999999999873 69999999874322 12345688887
Q ss_pred EecCCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHH
Q psy1666 177 QPQANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDA 256 (981)
Q Consensus 177 ~~~~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydA 256 (981)
++...++ ....+|||
T Consensus 270 ~~~~~~~-----------------------------------------------------------------~~~~~YdA 284 (384)
T 3qek_A 270 QLINGKN-----------------------------------------------------------------ESAHISDA 284 (384)
T ss_dssp EETTTTC-----------------------------------------------------------------HHHHHHHH
T ss_pred EEcCCCc-----------------------------------------------------------------hhHHHHHH
Confidence 7643211 13569999
Q ss_pred HHHHHHHHHHhHhhhcC-CCCCCCCCCCCCCccH----HHHhhcceee-ccCCCCeEEecCCCCC-CceeEEEEEEEcCC
Q psy1666 257 VMAFSIALDHMHADLCQ-GKVGLCDAMRPTKGPE----LLKYLRKVSF-QGLSEDHFKFDKDGDG-PARYNIIHFKQIRP 329 (981)
Q Consensus 257 VyAiAhALh~m~~~lC~-~~~~~C~~~~~~~~~q----Ll~~Lk~V~F-~g~~G~~V~FD~nGD~-~~~YdI~n~q~~~~ 329 (981)
||++|||||+|+++.+. .....|... ..+|+ |.+++++++| +|.+| +|.||++||+ ...|||+||+.
T Consensus 285 V~~~a~Al~~~~~~~~~~~~~~~c~~~--~~~~~~~~~l~~~~~~~~f~~G~~G-~v~fd~~G~~~~~~~~I~~~~~--- 358 (384)
T 3qek_A 285 VAVVAQAIHELFEMENITDPPRGCVGN--TNIWKTGPLFKRVLMSSKYPDGVTG-RIEFNEDGDRKFAQYSIMNLQN--- 358 (384)
T ss_dssp HHHHHHHHHHHHTSSSCCCCCSCCTTC--CCCCTTHHHHHHHHHTCCEEEETTE-EECBCTTSCBCSCCEEEEEEET---
T ss_pred HHHHHHHHHHHHhccCCCCCCCccccC--CCccccHHHHHHHHhcCCccCCCCc-ceEECCCCCCCcccEEEEEEcC---
Confidence 99999999999864321 223457542 34564 5567777788 88889 8999999998 79999999983
Q ss_pred CcEEEEEEEEEECCeEEEec
Q psy1666 330 GVYQWVQVGEYLEGELRLNM 349 (981)
Q Consensus 330 g~~~~v~VG~~~~~~L~in~ 349 (981)
..+++||+|+.++|.||+
T Consensus 359 --~~~~~VG~w~~~~l~i~~ 376 (384)
T 3qek_A 359 --RKLVQVGIFNGSYIIQND 376 (384)
T ss_dssp --TEEEEEEEECSSSEEECS
T ss_pred --CceEEEEEEeCCeEeecc
Confidence 268999999977787763
No 13
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.73 E-value=9.3e-19 Score=203.49 Aligned_cols=246 Identities=17% Similarity=0.192 Sum_probs=165.3
Q ss_pred cCCCCCCCCCcceeeEEeecch------------------hHHHHHHHHHHh-CCeeEEEEEEeecCCcchhhhhHHHHH
Q psy1666 51 TKPRARDDPDFIPVLMLFLRET------------------TAFEELEVLLAK-SSICIAVKEKLVKDSGVAEERAYDDIV 111 (981)
Q Consensus 51 ~~psa~~q~~a~~~lv~f~~~~------------------~~~~~l~~~~~~-~gICIA~~~~ip~~~~~~~~~~~~~ii 111 (981)
+.|++..|.++|+.++.+++|. ...+.+.+++.+ .|+||++.+.++.. ..++..++
T Consensus 126 ~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-----~~d~~~~l 200 (435)
T 1dp4_A 126 TGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGD-----PDHYPKLL 200 (435)
T ss_dssp CSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEEEEEECTTC-----GGGHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHHHHHHHHHHHHHhhcCeEEEEEEEecCc-----hhhHHHHH
Confidence 5566666666666555555441 234556677777 89999999876422 23567778
Q ss_pred HHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCC-ceEEEEeccCcccccccCCCccceeeEEEEEecC--CCCCChHH
Q psy1666 112 TKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATG-SFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA--NPVKGFDD 188 (981)
Q Consensus 112 ~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g-~~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~--~~ipgF~e 188 (981)
+++.+ +++||++++....+..++.++.++++.+ .++||+++.|..... .. .+|+|++..+. ..++++.+
T Consensus 201 ~~i~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~-~~-----~~g~l~~~~~~~~~~~~~~~~ 272 (435)
T 1dp4_A 201 RAVRR--KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLK-SA-----QGLVPQKPWERGDGQDRSARQ 272 (435)
T ss_dssp HHHHH--HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSC-SS-----CTTSCBCTTCCSSSCHHHHHH
T ss_pred HHHHh--hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEeccccccc-cc-----ccccccCCcccCCcchHHHHH
Confidence 77754 7899999999999999999998888876 369999998875432 11 13433322221 12344555
Q ss_pred HHhh---cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHH
Q psy1666 189 YFLN---LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALD 265 (981)
Q Consensus 189 f~~~---l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh 265 (981)
+.+. ++| .+++++++++ ||+..++|... ...|++.+.. ......++|||||++|||||
T Consensus 273 ~~~~~~~~~~-~~~~~~~~~~-f~~~~~~~~~~-----------~~~~~~~~~~------~~~~~~~~ydav~~~a~Al~ 333 (435)
T 1dp4_A 273 AFQAAKIITY-KEPDNPEYLE-FLKQLKLLADK-----------KFNFTVEDGL------KNIIPASFHDGLLLYVQAVT 333 (435)
T ss_dssp HGGGEEEEEE-CCCCSHHHHH-HHHHHHHHHHH-----------HHCCCCCCSG------GGHHHHHHHHHHHHHHHHHH
T ss_pred HhheeEEEec-CCCCChhHHH-HHHHHHHHhcC-----------CCCcccccch------hhHHHHHHHHHHHHHHHHHH
Confidence 5444 344 3455666777 77654443100 0124433210 11235679999999999999
Q ss_pred HhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 266 HMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 266 ~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
+++. |.+ ...++++|+++|++++|.|.+|. |.||++||+.+.|+|+|| ...+| .+++||.|++
T Consensus 334 ~~~~--~~~--------~~~~~~~l~~~l~~~~f~g~~G~-v~fd~~g~~~~~~~i~~~-~~~~g--~~~~vg~~~~ 396 (435)
T 1dp4_A 334 ETLA--QGG--------TVTDGENITQRMWNRSFQGVTGY-LKIDRNGDRDTDFSLWDM-DPETG--AFRVVLNYNG 396 (435)
T ss_dssp HHHH--TTC--------CTTCHHHHHHTTTTEEEEETTEE-EEECTTSBBCCCEEEEEE-CTTTC--CEEEEEEECT
T ss_pred HHHH--cCC--------CCCCHHHHHHHHhCceeecccee-EEECCCCCccceeEEEEe-cCCCC--cEEEEEEecC
Confidence 9975 311 13468999999999999999996 999999999999999999 23344 5899999985
No 14
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.73 E-value=1.8e-17 Score=189.85 Aligned_cols=236 Identities=11% Similarity=0.168 Sum_probs=166.6
Q ss_pred CCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEE
Q psy1666 58 DPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIV 125 (981)
Q Consensus 58 q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl 125 (981)
|..+|+.++.+++| ..+.+.|.++++++|+||++.+.++... ..++...+.++ +.++++||++
T Consensus 117 ~~~a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~----~~d~~~~l~~i-k~~~~~vii~ 191 (389)
T 3o21_A 117 LKGAILSLLSYYKWEKFVYLYDTERGFSVLQAIMEAAVQNNWQVTARSVGNIKD----VQEFRRIIEEM-DRRQEKRYLI 191 (389)
T ss_dssp SHHHHHHHHHHHTCCEEEEEECSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCC----THHHHHHHHHH-HTTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCC----cHHHHHHHHHH-HhCCCeEEEE
Confidence 67777777766666 4567888889999999999998775321 13567778776 5667999999
Q ss_pred EcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCcc
Q psy1666 126 FGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWF 204 (981)
Q Consensus 126 ~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~~ 204 (981)
++....+..+++++.++++.++ ++||.++.|..+..... ......|.+++.+.....|.+++|.+.
T Consensus 192 ~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~------------ 258 (389)
T 3o21_A 192 DCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLER-VMHGGANITGFQIVNNENPMVQQFIQR------------ 258 (389)
T ss_dssp ESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCCHH-HHHTTCEEEEEESCCTTCHHHHHHHHH------------
T ss_pred ECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccHHH-HhcCCcceEEEEEecCCChhHHHHHHH------------
Confidence 9999999999999999998763 79999987764432211 112335788888877778889999863
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhh---c-CCCCCCCC
Q psy1666 205 VDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADL---C-QGKVGLCD 280 (981)
Q Consensus 205 ~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~l---C-~~~~~~C~ 280 (981)
|+..+++.++.. +. . .......++|||||++|+|||++..+. | .+..+.|.
T Consensus 259 ----~~~~~~~~~~~~--------------~~---~----~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~ 313 (389)
T 3o21_A 259 ----WVRLDEREFPEA--------------KN---A----PLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCL 313 (389)
T ss_dssp ----HTTSCTTTSTTS--------------SS---S----CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSC
T ss_pred ----HHhccccccCCC--------------CC---C----ccchhHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCC
Confidence 343333221110 00 0 011235689999999999999997521 1 01123563
Q ss_pred C--CC-CCCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 281 A--MR-PTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 281 ~--~~-~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
. .. ..+|.+|+++|++++|+|.+| +|.||++||+. ..|+|+||+ ++ .+++||+|++
T Consensus 314 ~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~Fd~~G~~~~~~~~i~~~~--~~---g~~~VG~w~~ 373 (389)
T 3o21_A 314 ANPAVPWSQGIDIERALKMVQVQGMTG-NIQFDTYGRRTNYTIDVYEMK--VS---GSRKAGYWNE 373 (389)
T ss_dssp SSSCCCTTTTHHHHHHHHTCCEEETTE-EECBCTTSBBCSCCEEEEEEE--TT---EEEEEEEEET
T ss_pred CCCCCCCCCcHHHHHHHHhCcccccce-eeeeCCCCCcccceEEEEEEc--CC---CceeeeEEcC
Confidence 2 11 235678999999999999999 69999999986 589999996 22 3789999986
No 15
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.70 E-value=2.3e-17 Score=191.63 Aligned_cols=242 Identities=18% Similarity=0.218 Sum_probs=170.8
Q ss_pred hcCCCCCCCCCcceeeEEeecc-------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhc
Q psy1666 50 MTKPRARDDPDFIPVLMLFLRE-------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMT 116 (981)
Q Consensus 50 ~~~psa~~q~~a~~~lv~f~~~-------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~ 116 (981)
|+.|++..|..+|+.++.+++| ....+.|++++++.|+||++.+.++.+ +...+.++ +
T Consensus 133 r~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~d--------~~~~l~~i-~ 203 (433)
T 4f11_A 133 RTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFSND--------PCTSVKKL-K 203 (433)
T ss_dssp ESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEESSC--------CHHHHHHH-H
T ss_pred EecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccCcC--------HHHHHHHH-h
Confidence 4778888888888888877776 446678888888899999999998743 23456565 4
Q ss_pred CCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEecc----Cccc--------ccccCCCccceeeEEEEEecC---
Q psy1666 117 KPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSDG----WSAR--------GLVSDGSEAEVEGTLSLQPQA--- 180 (981)
Q Consensus 117 ~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~----W~~~--------~~~~~~~~~~~~G~l~~~~~~--- 180 (981)
+++++||++++...++..+++++.+.++.++ ++||+++. |... ..........++|++++.+..
T Consensus 204 ~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 283 (433)
T 4f11_A 204 GNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSS 283 (433)
T ss_dssp HTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCC
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCC
Confidence 5789999999999999999999999998874 69999998 7521 001112234568989888753
Q ss_pred CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHH
Q psy1666 181 NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAF 260 (981)
Q Consensus 181 ~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAi 260 (981)
..+|+|.. .++ ..|.++ |++... +. .......++|||||++
T Consensus 284 ~~~~~~~~----~~~-----~~f~~~-y~~~~~---------------------~~--------~~~~~a~~~YDAv~~l 324 (433)
T 4f11_A 284 KQIKTISG----KTP-----QQYERE-YNNKRS---------------------GV--------GPSKFHGYAYDGIWVI 324 (433)
T ss_dssp CCCCCTTS----CCH-----HHHHHH-HHHHHT---------------------TS--------CCCTTHHHHHHHHHHH
T ss_pred CCCcccCC----CCH-----HHHHHH-HHHhcC---------------------CC--------CcccchhhHHHHHHHH
Confidence 34566521 100 112233 443201 00 0112346799999999
Q ss_pred HHHHHHhHhhhcCCCCCCCCCCCC------CCccHHHHhhcceeeccCCCCeEEecCCCCCCceeEEEEEEEcCCCcEEE
Q psy1666 261 SIALDHMHADLCQGKVGLCDAMRP------TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQW 334 (981)
Q Consensus 261 AhALh~m~~~lC~~~~~~C~~~~~------~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~~~YdI~n~q~~~~g~~~~ 334 (981)
|||||++..+.+.+ +.|..+.. .++++|+++|++++|+|.+|. |.| ++||+...|+|+||+. + .+
T Consensus 325 a~Al~~a~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~f-~~Gd~~~~~~I~~~~~---g--~~ 395 (433)
T 4f11_A 325 AKTLQRAMETLHAS--SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ-VVF-RNGERMGTIKFTQFQD---S--RE 395 (433)
T ss_dssp HHHHHHHHHHHHHS--SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEE-EEE-ETTEEECEEEEEEEET---T--EE
T ss_pred HHHHHHHHHHHhcc--CCCCcccccccccHHHHHHHHHHHHhcEEEccceE-EEE-ecCceeeeEEEEEEEC---C--ce
Confidence 99999998755432 22332221 137899999999999999995 999 8999999999999973 3 68
Q ss_pred EEEEEEEC--CeEEEe
Q psy1666 335 VQVGEYLE--GELRLN 348 (981)
Q Consensus 335 v~VG~~~~--~~L~in 348 (981)
++||+|++ ++|.++
T Consensus 396 ~~VG~~~~~~~~l~~~ 411 (433)
T 4f11_A 396 VKVGEYNAVADTLEII 411 (433)
T ss_dssp EEEEEEETTTTEEEEC
T ss_pred EEEEEEECCCCeEEEe
Confidence 99999985 356653
No 16
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.66 E-value=2.4e-16 Score=180.61 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=167.8
Q ss_pred HhcCCCCCCCCCcceeeEEeecchh------------HHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhc
Q psy1666 49 LMTKPRARDDPDFIPVLMLFLRETT------------AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMT 116 (981)
Q Consensus 49 l~~~psa~~q~~a~~~lv~f~~~~~------------~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~ 116 (981)
+|+.|++.+|..+|+.++.+++|++ ..+.+.+++.+.|+||++.+ ++.. .++...+.++ +
T Consensus 117 fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~~~~~~~g~~v~~~~-~~~~------~d~~~~l~~i-~ 188 (393)
T 3om0_A 117 VSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRM-LDDS------RDPTPLLKEI-R 188 (393)
T ss_dssp EESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHHHHHHHSSSCEEEEE-CC-C------CCSHHHHHHH-H
T ss_pred EEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHhhhccCCeEEEEe-cCCC------CCHHHHHHHH-H
Confidence 5677888888888888887777711 22333344567899998765 3422 2455667666 4
Q ss_pred CCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCC
Q psy1666 117 KPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTV 195 (981)
Q Consensus 117 ~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p 195 (981)
.+++++|++.+....+..+++++.+.++.++ ++||.++.+....... .......|.+++.+.....|.+++|.+...
T Consensus 189 ~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~- 266 (393)
T 3om0_A 189 DDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLD-GIVEDSSNILGFSMFNTSHPFYPEFVRSLN- 266 (393)
T ss_dssp HHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCCT-TTCCSSCSEEEEECCCTTSTTHHHHHHHHH-
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccchh-hhhccCCcEEEEEEecCCccHHHHHHHHHH-
Confidence 5678999999999999999999999888763 7999886443222211 122334578888887777899998886542
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhh-hcCC
Q psy1666 196 ENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHAD-LCQG 274 (981)
Q Consensus 196 ~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~-lC~~ 274 (981)
+ .|.+. | ...+.. ........+||||+++|+|||++... .+..
T Consensus 267 ----------~-~~~~~--~------------------~~~~~~-----~p~~~a~~~YDAv~~la~Al~~~~~~~~~~~ 310 (393)
T 3om0_A 267 ----------M-SWREN--C------------------EASTYP-----GPALSAALMFDAVHVVVSAVRELNRSQEIGV 310 (393)
T ss_dssp ----------H-HHTTT--S------------------CGGGCC-----SCCHHHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred ----------H-Hhhhh--c------------------cCCCCC-----CCchHHHHHHhHHHHHHHHHHHHhhcccCcC
Confidence 1 34321 1 111000 01113567999999999999998642 1333
Q ss_pred CCCCCCCCCC-CCccHHHHhhcceeeccCCCCeEEecCCCCC-CceeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 275 KVGLCDAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDG-PARYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 275 ~~~~C~~~~~-~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~-~~~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
....|....+ .++.+|+++|++++|+|.+| ++.||++||+ ...|+|+|++. + .+++||+|++
T Consensus 311 ~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i~~~~~--~---g~~~VG~w~~ 374 (393)
T 3om0_A 311 KPLACTSANIWPHGTSLMNYLRMVEYDGLTG-RVEFNSKGQRTNYTLRILEKSR--Q---GHREIGVWYS 374 (393)
T ss_dssp CCCCTTCCCCCTTHHHHHHHHTTCCEEETTE-EECBCTTSCBCSCEEEEEEEET--T---EEEEEEEEEC
T ss_pred CCcCCCCCCcccCchHHHHHHHhCCCCCccc-eEEeCCCCcccceeEEEEEecc--C---CceEeeeEcC
Confidence 3456876544 57889999999999999999 6999999998 47999999972 2 4799999986
No 17
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=99.66 E-value=4.8e-16 Score=195.62 Aligned_cols=240 Identities=16% Similarity=0.185 Sum_probs=171.3
Q ss_pred CCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEE
Q psy1666 58 DPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIV 125 (981)
Q Consensus 58 q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl 125 (981)
|..||+.++.+++| +...+.|+++++++|+||++.+.++.... ....++...+.++ ++++++||++
T Consensus 108 ~~~a~~~l~~~~gw~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~~l~~i-~~~~~~vii~ 185 (823)
T 3kg2_A 108 LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRSLFQDL-ELKKERRVIL 185 (823)
T ss_dssp CHHHHHHHHHHTTCSEEEEEECGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSS-STTTTTTTHHHHT-TTTTCCEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEeCChhHHHHHHHHHHhhccCCceEEEEeecCCCC-ccchhHHHHHHHH-HhcCCeEEEE
Confidence 77888888888877 55788899999999999999998875421 0123555667775 6678999999
Q ss_pred EcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCcc
Q psy1666 126 FGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWF 204 (981)
Q Consensus 126 ~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~~ 204 (981)
++....+..++.++.+.++.++ ++||.++.+...... ........|.+++.+.....|.+++|.+.
T Consensus 186 ~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~------------ 252 (823)
T 3kg2_A 186 DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-LKIQFGGAEVSGFQIVDYDDSLVSKFIER------------ 252 (823)
T ss_dssp ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-SSSSSSBCEEEEEESSCTTSHHHHHHHHH------------
T ss_pred ECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-HHhhcCCCCceEeeeecCCchHHHHHHHH------------
Confidence 9999999999999998888653 799999754332221 12223345688998887778889999864
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhc----CCCCCCCC
Q psy1666 205 VDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLC----QGKVGLCD 280 (981)
Q Consensus 205 ~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC----~~~~~~C~ 280 (981)
|+..+.+..+.. .. ........++|||||++|+|||++..+.- ....+.|.
T Consensus 253 ----~~~~~~~~~~~~----------------~~-----~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~ 307 (823)
T 3kg2_A 253 ----WSTLEEKEYPGA----------------HT-----ATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCL 307 (823)
T ss_dssp ----HTTSCTTTSTTC----------------CS-----SCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTT
T ss_pred ----HHhhcccccCCC----------------Cc-----cccchhhHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcc
Confidence 333333221110 00 00111356899999999999999986321 11234676
Q ss_pred CCC---CCCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEECC
Q psy1666 281 AMR---PTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEG 343 (981)
Q Consensus 281 ~~~---~~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~~ 343 (981)
... ..+|.+|+++|++++|+|.+|+ |.||++||+. ..|+|+|++ +++ +++||.|+++
T Consensus 308 ~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~~~~~~~I~~~~--~~g---~~~vg~w~~~ 368 (823)
T 3kg2_A 308 ANPAVPWGQGVEIERALKQVQVEGLSGN-IKFDQNGKRINYTINIMELK--TNG---PRKIGYWSEV 368 (823)
T ss_dssp CSSCCCCTHHHHHHHHHTTCCCEETTEE-CCBCSSSCBCSCEEEEEEEC--SSC---EEEEEEEETT
T ss_pred CCCCCcccchHHHHHHHHhcccCCcccC-eEECCCCcccccEEEEEEEc--CCC---CeeEEEEcCC
Confidence 542 2457799999999999999995 9999999986 689999987 222 5799999963
No 18
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.64 E-value=8.3e-16 Score=175.18 Aligned_cols=239 Identities=16% Similarity=0.234 Sum_probs=152.0
Q ss_pred CCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEE
Q psy1666 58 DPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIV 125 (981)
Q Consensus 58 q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl 125 (981)
|..+|+.++.+++| ....+.|.++++++|+||++.+.++.... ....++...+.++ +.+++++|++
T Consensus 108 ~~~a~~~~~~~~gw~~vaii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~~l~~i-~~~~~~vii~ 185 (376)
T 3hsy_A 108 LKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRSLFQDL-ELKKERRVIL 185 (376)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC----------------------CEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCchhHHHHHHHHHHhhhcCCeEEEEEecccccc-ccchhHHHHHHHH-hhCCCeEEEE
Confidence 77777777777766 44678888888899999999887653210 0123566677765 5567899999
Q ss_pred EcchhhHHHHHHHHHhhccCC-ceEEEEec-cCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCc
Q psy1666 126 FGSDQEVAGVMRAVRRLNATG-SFSWVGSD-GWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPW 203 (981)
Q Consensus 126 ~~s~~~a~~~~~~~~~~~l~g-~~vWI~s~-~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~ 203 (981)
++....+..+++++.++++.+ .++||.++ ++..... .. ......+.+++.+.....|.+++|.+.
T Consensus 186 ~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~F~~~----------- 252 (376)
T 3hsy_A 186 DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-LK-IQFGGANVSGFQIVDYDDSLVSKFIER----------- 252 (376)
T ss_dssp ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG-GG-SCCTTCEEEEEESCCTTSHHHHHHHHH-----------
T ss_pred ECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch-HH-hhcCCcCceEEEEecCCchHHHHHHHH-----------
Confidence 999999999999999988865 37999885 2322211 11 111122477887766667888888763
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcC----CCCCCC
Q psy1666 204 FVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQ----GKVGLC 279 (981)
Q Consensus 204 ~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~----~~~~~C 279 (981)
|+..+++.++.. +. ..........|||||++|+|++++..+.-. +..+.|
T Consensus 253 -----~~~~~~~~~~~~----------------~~-----~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~ 306 (376)
T 3hsy_A 253 -----WSTLEEKEYPGA----------------HT-----ATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDC 306 (376)
T ss_dssp -----HTTSCTTTSTTC----------------SC-----SSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCT
T ss_pred -----HHhccccccCCC----------------CC-----cccchhHHHHHHHHHHHHHHHHHHHhcCCccccCCCCCcc
Confidence 444444322110 00 001123567999999999999999752110 112346
Q ss_pred --CCCCC-CCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEECC
Q psy1666 280 --DAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEG 343 (981)
Q Consensus 280 --~~~~~-~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~~ 343 (981)
....+ .+|.+|+++|++++|+|.+| +|.||++||+. ..|+|+|++ ++ .+++||+|++.
T Consensus 307 ~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i~~~~--~~---g~~~VG~w~~~ 368 (376)
T 3hsy_A 307 LANPAVPWGQGVEIERALKQVQVEGLSG-NIKFDQNGKRINYTINIMELK--TN---GPRKIGYWSEV 368 (376)
T ss_dssp TCSSCCCCHHHHHHHHHHHHCCEEETTE-EECBCTTSBBCSCEEEEEEEE--TT---EEEEEEEEETT
T ss_pred CCCCCCCcCCcHHHHHHHHhcCcCCCcc-ceeECCCCCCccceEEEEEec--CC---CceEEEEEcCC
Confidence 32222 34568999999999999999 79999999975 689999996 22 36999999863
No 19
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.63 E-value=4.2e-16 Score=178.14 Aligned_cols=240 Identities=13% Similarity=0.174 Sum_probs=165.6
Q ss_pred CCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEE
Q psy1666 58 DPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIV 125 (981)
Q Consensus 58 q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl 125 (981)
|..+|+.++.+++| ....+.|+++++++|+||++.+..+.. ..++...+.++ +.+++++|++
T Consensus 115 ~~~a~~~~~~~~g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-----~~d~~~~l~~i-k~~~~~vii~ 188 (384)
T 3saj_A 115 LQEALISIIDHYKWQTFVYIYDADRGLSVLQRVLDTAAEKNWQVTAVNILTTT-----EEGYRMLFQDL-EKKKERLVVV 188 (384)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCC-----HHHHHHTTTTC-CSCSEEEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEEEeCchhHHHHHHHHHHhhhcCceEEEEEeccCC-----chhHHHHHHHH-hccCCcEEEE
Confidence 66666666666665 456788888999999999998843321 23566666654 5678999999
Q ss_pred EcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccccccCCCccceeeEEEEEecCCCCCChHHHHhhcCCCCCCCCCcc
Q psy1666 126 FGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWF 204 (981)
Q Consensus 126 ~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~~ipgF~ef~~~l~p~~~~~n~~~ 204 (981)
++....+..+++++.+.++.++ ++||.++.|....... .......|.+++.+.....|.+++|.+.
T Consensus 189 ~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~F~~~------------ 255 (384)
T 3saj_A 189 DCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLN-KFKESGANVTGFQLVNYTDTIPARIMQQ------------ 255 (384)
T ss_dssp ECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCHH-HHHHTTCCEEEEECCCTTSHHHHHHHHH------------
T ss_pred EcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccHH-HhhCCCcceEEEEeecCCChHHHHHHHH------------
Confidence 9999999999999999998764 7999987543221110 1111224588888776667778888753
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhh---hc-CCCCCCCC
Q psy1666 205 VDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHAD---LC-QGKVGLCD 280 (981)
Q Consensus 205 ~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~---lC-~~~~~~C~ 280 (981)
|+..+++..+.. +. .........+|||||++|+||+++... .| ++..+.|.
T Consensus 256 ----~~~~~~~~~p~~--------------~~-------~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~ 310 (384)
T 3saj_A 256 ----WRTSDSRDHTRV--------------DW-------KRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCL 310 (384)
T ss_dssp ----HHHHHHHC---------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSC
T ss_pred ----HHhcCccccCCC--------------CC-------CccchhHHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCC
Confidence 333322211100 00 001113567999999999999999752 23 23456788
Q ss_pred CCC--C-CCccHHHHhhcceeeccCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEECC-eEEE
Q psy1666 281 AMR--P-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEG-ELRL 347 (981)
Q Consensus 281 ~~~--~-~~~~qLl~~Lk~V~F~g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~~-~L~i 347 (981)
.+. + .+|.+|+++|++++|.|.+|+ |.||++||+. ..|+|+|++. + .+++||.|++. .+.+
T Consensus 311 ~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~~~~~~~i~~~~~--~---g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 311 ANPAVPWGQGIDIQRALQQVRFEGLTGN-VQFNEKGRRTNYTLHVIEMKH--D---GIRKIGYWNEDDKFVP 376 (384)
T ss_dssp CBSCCCCTTHHHHHHHHHSCCEEETTEE-ECBCTTSBBCSCCEEEEEEET--T---EEEEEEEEETTTEEEE
T ss_pred CCCCCCcCCcHHHHHHHHhCcCccccee-eEeCCCCCcccceEEEEEecc--C---CcceeEEEcCCCCccc
Confidence 652 2 578899999999999999995 9999999975 6899999973 2 36899999963 4443
No 20
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.39 E-value=5.6e-13 Score=152.63 Aligned_cols=240 Identities=14% Similarity=0.204 Sum_probs=152.0
Q ss_pred cCCCCCCCCCcceeeEEeecc------------hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCC
Q psy1666 51 TKPRARDDPDFIPVLMLFLRE------------TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKP 118 (981)
Q Consensus 51 ~~psa~~q~~a~~~lv~f~~~------------~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s 118 (981)
+.|++.+|..+++.++.+++| ....+.|++++++.|+||++.+ ++... .++...+.++ +.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~g~~~v~ii~d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~~~~-----~d~~~~l~~i-~~~ 190 (395)
T 3h6g_A 118 LYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQ-LPADT-----KDAKPLLKEM-KRG 190 (395)
T ss_dssp EEECHHHHHHHHHHHHHHTTCSEEEEEESSTHHHHHTHHHHTGGGTSSCEEEEEE-CCSSG-----GGGHHHHHHH-HHT
T ss_pred ecCCHHHHHHHHHHHHHHCCCeEEEEEEEChhHHHHHHHHHHhhhcCCceEEEEE-eCCCc-----hhHHHHHHHH-hhc
Confidence 334444444444444444443 3345667777788899999876 76542 3566777776 556
Q ss_pred CcEEEEEEcchhhHHHHHHHHHhhccCCc-eEEEEeccCcccc-cccCCCccceee--EEEEEecCCCCCChHHHHhhcC
Q psy1666 119 RARGVIVFGSDQEVAGVMRAVRRLNATGS-FSWVGSDGWSARG-LVSDGSEAEVEG--TLSLQPQANPVKGFDDYFLNLT 194 (981)
Q Consensus 119 ~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vWI~s~~W~~~~-~~~~~~~~~~~G--~l~~~~~~~~ipgF~ef~~~l~ 194 (981)
++++|++.+...++..+++++.+.++.++ ++||.+. +.... .... ....| ..++.+.....|..++|.+..
T Consensus 191 ~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~-~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~f~~~~- 265 (395)
T 3h6g_A 191 KEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTT-LDLFALDVEP---YRYSGVNMTGFRILNTENTQVSSIIEKW- 265 (395)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECC-TTGGGBCCTT---TTTSCCEEEEEECSCTTSHHHHHHHHHH-
T ss_pred CCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEec-CceeEechHH---hccCccceEEEEEecCCcHHHHHHHHHH-
Confidence 78999999999999999999999888653 7899773 22111 1100 01123 466666554556677776532
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCC
Q psy1666 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQG 274 (981)
Q Consensus 195 p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~ 274 (981)
...+.-..+.. ....|.+ .........||||+++|+|++++... ..
T Consensus 266 ---------------~~~~~~~~p~~--------~~~~~~~---------~~~~~aa~~YDav~~~a~Al~~a~~~--~~ 311 (395)
T 3h6g_A 266 ---------------SMERLQAPPKP--------DSGLLDG---------FMTTDAALMYDAVHVVSVAVQQFPQM--TV 311 (395)
T ss_dssp ---------------HHC------CC--------SSCBCTT---------CCCHHHHHHHHHHHHHHHHHHTCTTC--CC
T ss_pred ---------------HhcccccCccc--------CCCcCCC---------ccchhHHHHHhHHHHHHHHHHhhhcC--CC
Confidence 11110000000 0000100 01113457999999999999987431 11
Q ss_pred CCCCCCCCCC-CCccHHHHhhcceeeccCCCCeEEecC-CCCCCc-eeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 275 KVGLCDAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDK-DGDGPA-RYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 275 ~~~~C~~~~~-~~~~qLl~~Lk~V~F~g~~G~~V~FD~-nGD~~~-~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
....|....+ .++..|.++|++++|.|.+| ++.||+ +|++.. .|+|++++. + .+++||.|++
T Consensus 312 ~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG-~i~fd~~~G~~~~~~~~i~~~~~---~--~~~~vG~w~~ 376 (395)
T 3h6g_A 312 SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTG-RITFNKTNGLRTDFDLDVISLKE---E--GLEKIGTWDP 376 (395)
T ss_dssp CCCCTTSCCCCTTHHHHHHHHHHCEEEETTE-EEECCTTTSEECCCCEEEEEEET---T--EEEEEEEEET
T ss_pred cCCCCCCCCcCcccHHHHHHHhcCCCcCcce-eeEecCCCCeecCCeEEEEEecc---C--CceEEEEEcC
Confidence 2345754432 46789999999999999999 699999 999875 899999972 2 4789999986
No 21
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.18 E-value=9.2e-12 Score=144.29 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=95.4
Q ss_pred hHHHHHHhcCCCcCCCCCCCCCCCCCCCCCCCcccccCCccccccchhHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC
Q psy1666 627 SSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMR 706 (981)
Q Consensus 627 ~l~efWe~~f~C~~~~~~~~~~~~~~~~~Ctg~e~L~~~~~~~~~~~~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~ 706 (981)
+.++||+..++|.-.. ..|++++.. .+....++|||||++|||||+++. +.. .
T Consensus 289 ~~~~f~~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~ydav~~~a~Al~~~~~--~~~--------~ 341 (435)
T 1dp4_A 289 EYLEFLKQLKLLADKK-----------FNFTVEDGL------KNIIPASFHDGLLLYVQAVTETLA--QGG--------T 341 (435)
T ss_dssp HHHHHHHHHHHHHHHH-----------HCCCCCCSG------GGHHHHHHHHHHHHHHHHHHHHHH--TTC--------C
T ss_pred hHHHHHHHHHHHhcCC-----------CCcccccch------hhHHHHHHHHHHHHHHHHHHHHHH--cCC--------C
Confidence 5689999877773100 136554321 111345799999999999999973 221 1
Q ss_pred CCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEcCCCcEEEEEEEEEECc--eEEE-eccccccccCCCC
Q psy1666 707 PTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEG--ELRL-NMSAIQFKLSHPS 783 (981)
Q Consensus 707 ~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~~~~~~~VG~~~~~--~l~i-n~~~i~W~~~~~~ 783 (981)
..++++|+++|++++|.|.+|. +.||++||+.+.|+|+|| ...++ .+++||.|++. +|.+ |.+.|.|+++ +
T Consensus 342 ~~~~~~l~~~l~~~~f~g~~G~-v~fd~~g~~~~~~~i~~~-~~~~g--~~~~vg~~~~~~~~l~~~~~~~i~W~~~--~ 415 (435)
T 1dp4_A 342 VTDGENITQRMWNRSFQGVTGY-LKIDRNGDRDTDFSLWDM-DPETG--AFRVVLNYNGTSQELMAVSEHKLYWPLG--Y 415 (435)
T ss_dssp TTCHHHHHHTTTTEEEEETTEE-EEECTTSBBCCCEEEEEE-CTTTC--CEEEEEEECTTTCCEEESTTCCCCCTTS--S
T ss_pred CCCHHHHHHHHhCceeecccee-EEECCCCCccceeEEEEe-cCCCC--cEEEEEEecCCCceEEEcCCceeeCCCC--C
Confidence 2458899999999999999995 999999999999999999 33344 58999999863 7888 8899999865 6
Q ss_pred CCCc
Q psy1666 784 PPES 787 (981)
Q Consensus 784 ~P~S 787 (981)
+|.|
T Consensus 416 ~P~~ 419 (435)
T 1dp4_A 416 PPPD 419 (435)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7765
No 22
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.10 E-value=8.7e-11 Score=133.85 Aligned_cols=100 Identities=22% Similarity=0.274 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhc-cCCCCCCCCCCCCChhhHh----hhhccccc-cCCCCCeEEeccCCCC-cceeeEE
Q psy1666 673 LQFVSDAVMAFSIALDHMHADLC-QGKVGLCDAMRPTKGPELL----KYLRKVSF-QGLSEDHFKFDKDGDG-PARYNII 745 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~~c-~~~~~~c~~~~~~~~~qL~----~~L~~v~F-~~~~g~~v~Fd~~Gd~-~~~YdI~ 745 (981)
.+.+|||||++|||||+|+.+.+ ......|.. ...||++. +++++++| .|.+| ++.||++|++ ...|||+
T Consensus 278 ~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~--~~~~~~~~~~l~~~~~~~~f~~G~~G-~v~fd~~G~~~~~~~~I~ 354 (384)
T 3qek_A 278 SAHISDAVAVVAQAIHELFEMENITDPPRGCVG--NTNIWKTGPLFKRVLMSSKYPDGVTG-RIEFNEDGDRKFAQYSIM 354 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTT--CCCCCTTHHHHHHHHHTCCEEEETTE-EECBCTTSCBCSCCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCcccc--CCCccccHHHHHHHHhcCCccCCCCc-ceEECCCCCCCcccEEEE
Confidence 45899999999999999974221 111234643 24577654 45555576 77788 8999999998 7999999
Q ss_pred EeEEcCCCcEEEEEEEEEECceEEEeccccccccC
Q psy1666 746 HFKQIRPGVYQWVQVGEYLEGELRLNMSAIQFKLS 780 (981)
Q Consensus 746 n~~~~~~~~~~~~~VG~~~~~~l~in~~~i~W~~~ 780 (981)
||+. ..+++||.|++++|.||+++|.|+++
T Consensus 355 ~~~~-----~~~~~VG~w~~~~l~i~~~~i~W~~~ 384 (384)
T 3qek_A 355 NLQN-----RKLVQVGIFNGSYIIQNDRKIIWPGG 384 (384)
T ss_dssp EEET-----TEEEEEEEECSSSEEECSSCCCCSCC
T ss_pred EEcC-----CceEEEEEEeCCeEeeccceeeCCCC
Confidence 9983 26899999998899999999999853
No 23
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.09 E-value=3.7e-10 Score=128.25 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhccCC----CCCCCCCCCCChh----hHhhhhccccccCCCCCeEEeccCCCCc-ceee
Q psy1666 673 LQFVSDAVMAFSIALDHMHADLCQGK----VGLCDAMRPTKGP----ELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYN 743 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~~c~~~----~~~c~~~~~~~~~----qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~Yd 743 (981)
..++|||||++|||||+++.+.+... ...|.. ....+| +|+++|++++|+|.+| +|.||++||+. ..||
T Consensus 277 ~a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~G~~l~~~l~~v~f~G~tG-~v~Fd~~G~r~~~~~~ 354 (389)
T 4gpa_A 277 SALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLA-NPAAPWGQGIDMERTLKQVRIQGLTG-NVQFDHYGRRVNYTMD 354 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCTTC-SSCCCCTTHHHHHHHHHTCEEEETTE-EEEBCTTSCBCSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccCCcccccc-CCCcccchHHHHHHHHHhCceecCce-eEEECCCCCCCCCEEE
Confidence 45899999999999999985332211 112222 123344 5999999999999999 69999999987 5899
Q ss_pred EEEeEEcCCCcEEEEEEEEEEC-ceEEEec
Q psy1666 744 IIHFKQIRPGVYQWVQVGEYLE-GELRLNM 772 (981)
Q Consensus 744 I~n~~~~~~~~~~~~~VG~~~~-~~l~in~ 772 (981)
|+|++. + .+++||.|++ ++|.+-.
T Consensus 355 I~~l~~--~---~~~~VG~W~~~~gl~~~~ 379 (389)
T 4gpa_A 355 VFELKS--T---GPRKVGYWNDMDKLVLIQ 379 (389)
T ss_dssp EEEEET--T---EEEEEEEEETTTEEEECC
T ss_pred EEEEEC--C---EEEEEEEEECCCCeEECC
Confidence 999973 2 4799999996 4666643
No 24
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.03 E-value=3.1e-10 Score=131.78 Aligned_cols=101 Identities=20% Similarity=0.414 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEcCCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPG 753 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~ 753 (981)
.++|||||++|||||+++. +.. + ..++++|+++|++++|.|.+| ++.||++||+.+.|+|+||+..+++
T Consensus 316 ~~~YdAv~~~A~Al~~~~~--~~~----~----~~~~~~l~~~l~~~~f~g~~G-~v~fd~~Gd~~~~~~I~~~~~~~~g 384 (441)
T 1jdp_A 316 EGFHDAILLYVLALHEVLR--AGY----S----KKDGGKIIQQTWNRTFEGIAG-QVSIDANGDRYGDFSVIAMTDVEAG 384 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTC----C----TTCHHHHHHHHSSEEEEETTE-EEEECTTSBBCCEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHHHH--hCC----C----CCCHHHHHHHHhCCeeECCcc-ceEECCCCCccccEEEEecccCCCC
Confidence 5799999999999999973 221 1 235889999999999998887 7999999999999999999987766
Q ss_pred cEEEEEEEEEEC--c---------------eEEEeccccccccCCCCCCCccCCcc
Q psy1666 754 VYQWVQVGEYLE--G---------------ELRLNMSAIQFKLSHPSPPESVCSLP 792 (981)
Q Consensus 754 ~~~~~~VG~~~~--~---------------~l~in~~~i~W~~~~~~~P~S~Cs~~ 792 (981)
.+++||+|++ . ++.||++.|.|++ +.+.|+++
T Consensus 385 --~~~~VG~~~~~~~~~~~~~~~~i~w~g~~l~i~~~~i~w~~-----~~~~c~~~ 433 (441)
T 1jdp_A 385 --TQEVIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHT-----NSSPCKSC 433 (441)
T ss_dssp --EEEEEEEEETTTTEEEECC-----------------------------------
T ss_pred --ceEEEEEEcCCCCeEEECCCceeeCCCCCccCCCCCceecC-----CCCCcccc
Confidence 5899999984 2 4666666777753 56778875
No 25
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.89 E-value=3.1e-08 Score=111.58 Aligned_cols=203 Identities=10% Similarity=0.096 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCc-eEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGS-FSW 150 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~-~vW 150 (981)
+...+.|++.+++.|+++...+.++.... ++...+++++ .+++.+|++.+....+..++.++.+.++.++ ..|
T Consensus 153 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----d~~~~~~~l~-~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~ 226 (368)
T 4eyg_A 153 NDALAFFKERFTAGGGEIVEEIKVPLANP-----DFAPFLQRMK-DAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKV 226 (368)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECSSSC-----CCHHHHHHHH-HHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCCCCC-----cHHHHHHHHH-hcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceE
Confidence 34467888888999999988888775432 3445566653 3456788888888899999999988888764 578
Q ss_pred EEeccCcccccccCCCccceeeEEEEEecC--CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCC
Q psy1666 151 VGSDGWSARGLVSDGSEAEVEGTLSLQPQA--NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSH 228 (981)
Q Consensus 151 I~s~~W~~~~~~~~~~~~~~~G~l~~~~~~--~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~ 228 (981)
++++.|........ .....+|.+...+.. ...|..++|.+.. ..+...
T Consensus 227 ~~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-----------------~~~~~~------------ 276 (368)
T 4eyg_A 227 IGPGDVMDDDLLNS-MGDAALGVVTAHMYSAAHPSAMNKEFVAAY-----------------KKEFGQ------------ 276 (368)
T ss_dssp EEETTTTCHHHHTT-CCGGGTTCEEEESCCTTCCSHHHHHHHHHH-----------------HHHHSS------------
T ss_pred EecCcccCHHHHHh-hhhhhCCeEEeeecCCCCCCHHHHHHHHHH-----------------HHhCCC------------
Confidence 88876554333221 123456766665543 2345566665431 111000
Q ss_pred CCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEE
Q psy1666 229 YSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFK 308 (981)
Q Consensus 229 ~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~ 308 (981)
.........||||+++|+||++.- ...++..|.+.|++++|.|.+| ++.
T Consensus 277 ----------------~p~~~~~~~yda~~~~~~al~~~g--------------~~~~~~~l~~al~~~~~~g~~G-~i~ 325 (368)
T 4eyg_A 277 ----------------RPGFMAVGGYDGIHLVFEALKKTG--------------GKADGDSLIAAMKGMKWESPRG-PIS 325 (368)
T ss_dssp ----------------CCCHHHHHHHHHHHHHHHHHHHTT--------------TCCSHHHHHHHHTTCEEEETTE-EEE
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHcCCcccCCC-CeE
Confidence 001134568999999999998862 1246789999999999999999 699
Q ss_pred ec-CCCCCCceeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 309 FD-KDGDGPARYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 309 FD-~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
|| ++|++...+.|.+++.. +|.+..+.+|+|.+
T Consensus 326 f~~~~~~~~~~~~i~~~~~~-~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 326 IDPETRDIVQNIYIRKVEKV-DGELYNIEFAKFDA 359 (368)
T ss_dssp ECTTTCCEEEEEEEEEEEEE-TTEEEEEEEEEEEE
T ss_pred ECcccCCcccceEEEEEEec-CCeEEEEEeecccc
Confidence 99 89999888999999864 78889999999973
No 26
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.84 E-value=4e-08 Score=109.57 Aligned_cols=183 Identities=13% Similarity=0.191 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEE
Q psy1666 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVG 152 (981)
Q Consensus 73 ~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~ 152 (981)
...+.+++.+++.|+++...+.++.... ++...+++++. +++.+|++.+....+..++.++.+.++.. -|++
T Consensus 153 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----d~~~~~~~l~~-~~~d~i~~~~~~~~a~~~~~~~~~~g~~~--~~~~ 224 (346)
T 1usg_A 153 GLARSVQDGLKAANANVVFFDGITAGEK-----DFSALIARLKK-ENIDFVYYGGYYPEMGQMLRQARSVGLKT--QFMG 224 (346)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCTTCC-----CCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHTTCCC--EEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEeccCCCCc-----CHHHHHHHHHh-cCCCEEEEcCcchHHHHHHHHHHHcCCCC--eEEe
Confidence 3456778888899999988777764322 33455666643 45778888887778888898888888765 4999
Q ss_pred eccCcccccccCCCccceeeEEEEEecC-CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCC
Q psy1666 153 SDGWSARGLVSDGSEAEVEGTLSLQPQA-NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYST 231 (981)
Q Consensus 153 s~~W~~~~~~~~~~~~~~~G~l~~~~~~-~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~~ 231 (981)
+++|........ .....+|.+...+.. ...|..++|++. +.+.+..
T Consensus 225 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~f~~~--------------------~~~~~~~------------ 271 (346)
T 1usg_A 225 PEGVGNASLSNI-AGDAAEGMLVTMPKRYDQDPANQGIVDA--------------------LKADKKD------------ 271 (346)
T ss_dssp CGGGCCTTHHHH-HGGGGTTCEEEECCCGGGSGGGHHHHHH--------------------HHHTTCC------------
T ss_pred cCCCCcHHHHHH-hhHhhCCeEEecCCCCCCCHHHHHHHHH--------------------HHHHhCC------------
Confidence 988875433211 112346766655421 122334444331 1111000
Q ss_pred CCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEecC
Q psy1666 232 ECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311 (981)
Q Consensus 232 ~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD~ 311 (981)
.........||||+++|+||+++- +.++.+|.+.|++++|.|.+| ++.||+
T Consensus 272 -------------~~~~~~~~~yda~~~~~~al~~~g---------------~~~~~~l~~~l~~~~~~g~~G-~i~f~~ 322 (346)
T 1usg_A 272 -------------PSGPYVWITYAAVQSLATALERTG---------------SDEPLALVKDLKANGANTVIG-PLNWDE 322 (346)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHCEEETTE-EECBCT
T ss_pred -------------CCchhHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCcccee-eeEECC
Confidence 001134578999999999999872 135789999999999999999 799999
Q ss_pred CCCCC-ceeEEEEEE
Q psy1666 312 DGDGP-ARYNIIHFK 325 (981)
Q Consensus 312 nGD~~-~~YdI~n~q 325 (981)
+||+. ..|+|++|+
T Consensus 323 ~g~~~~~~~~i~~~~ 337 (346)
T 1usg_A 323 KGDLKGFDFGVFQWH 337 (346)
T ss_dssp TSSBSSCCCEEEEEC
T ss_pred CCCccCCceEEEEEe
Confidence 99987 579999986
No 27
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.83 E-value=3e-09 Score=120.22 Aligned_cols=97 Identities=21% Similarity=0.376 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHhHHh--hccCCCCCCCCCCC---CChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeEEEe
Q psy1666 674 QFVSDAVMAFSIALDHMHAD--LCQGKVGLCDAMRP---TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHF 747 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~--~c~~~~~~c~~~~~---~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI~n~ 747 (981)
..+|||||++|||+|+|..+ .|+.....|..... ..+.+|++||++++|+|. .+.||++|++. ..|||+|+
T Consensus 261 ~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl---~i~F~~~G~~~~~~~~Iinl 337 (364)
T 3qel_B 261 ARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR---DLSFSEDGYQMHPKLVIILL 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE---ECCBCTTSSBSSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc---eEEECCCCCcccceEEEEEE
Confidence 47999999999999999743 24444567876532 245579999999999875 79999999998 69999999
Q ss_pred EEcCCCcEEEEEEEEEECceEEEecccccccc
Q psy1666 748 KQIRPGVYQWVQVGEYLEGELRLNMSAIQFKL 779 (981)
Q Consensus 748 ~~~~~~~~~~~~VG~~~~~~l~in~~~i~W~~ 779 (981)
+. ...+++||.|++.+|.++ .+.|++
T Consensus 338 ~~----~~~~~~VG~W~~~~L~~~--~~~Wp~ 363 (364)
T 3qel_B 338 NK----ERKWERVGKWKDKSLQMK--YYVWPR 363 (364)
T ss_dssp CT----TSCEEEEEEECSSCEEES--CSSCCC
T ss_pred cC----CCCcEEEEEECCCeEEeC--cCCCCC
Confidence 73 125789999987677775 688863
No 28
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.79 E-value=7.4e-09 Score=119.77 Aligned_cols=98 Identities=19% Similarity=0.357 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC--CC----ChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEe
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMR--PT----KGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHF 747 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~--~~----~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~ 747 (981)
.++|||||++|+|||++....+.. +.|.... .. .+++|+++|++++|.|.+|. |.| ++||+...|+|+|+
T Consensus 315 ~~~YDAv~~la~Al~~a~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~f-~~Gd~~~~~~I~~~ 390 (433)
T 4f11_A 315 GYAYDGIWVIAKTLQRAMETLHAS--SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ-VVF-RNGERMGTIKFTQF 390 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEE-EEE-ETTEEECEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcc--CCCCcccccccccHHHHHHHHHHHHhcEEEccceE-EEE-ecCceeeeEEEEEE
Confidence 479999999999999997533322 2222211 11 26789999999999999994 999 89999999999999
Q ss_pred EEcCCCcEEEEEEEEEEC--ceEEEeccccccccC
Q psy1666 748 KQIRPGVYQWVQVGEYLE--GELRLNMSAIQFKLS 780 (981)
Q Consensus 748 ~~~~~~~~~~~~VG~~~~--~~l~in~~~i~W~~~ 780 (981)
+. + .+++||+|++ ++|.++++.|.|+++
T Consensus 391 ~~---g--~~~~VG~~~~~~~~l~~~~~~i~W~~~ 420 (433)
T 4f11_A 391 QD---S--REVKVGEYNAVADTLEIINDTIRFQGS 420 (433)
T ss_dssp ET---T--EEEEEEEEETTTTEEEECTTTCCCSSS
T ss_pred EC---C--ceEEEEEEECCCCeEEEeCCceECCCC
Confidence 73 3 6899999985 589999999999975
No 29
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=98.75 E-value=1.1e-07 Score=107.21 Aligned_cols=196 Identities=16% Similarity=0.120 Sum_probs=134.9
Q ss_pred hHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEE
Q psy1666 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVG 152 (981)
Q Consensus 73 ~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~ 152 (981)
...+.+++.+++.|++|...+ ++.... ++...+++++ ..++.+|++.++...+..++.++.+.++.. .|++
T Consensus 165 ~~~~~~~~~~~~~G~~v~~~~-~~~~~~-----d~~~~~~~l~-~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~--~~~~ 235 (366)
T 3td9_A 165 GLSNFFINKFTELGGQVKRVF-FRSGDQ-----DFSAQLSVAM-SFNPDAIYITGYYPEIALISRQARQLGFTG--YILA 235 (366)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-ECTTCC-----CCHHHHHHHH-HTCCSEEEECSCHHHHHHHHHHHHHTTCCS--EEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE-eCCCCc-----cHHHHHHHHH-hcCCCEEEEccchhHHHHHHHHHHHcCCCc--eEEe
Confidence 345778888899999998888 765332 3455666653 445778888788888999998888888764 6898
Q ss_pred eccCcccccccCCCccceeeEEEEEec---CCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 153 SDGWSARGLVSDGSEAEVEGTLSLQPQ---ANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 153 s~~W~~~~~~~~~~~~~~~G~l~~~~~---~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
+++|........ .....+|.+...+. ....|..++|.+.. ...++-
T Consensus 236 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~----------------~~~~g~-------------- 284 (366)
T 3td9_A 236 GDGADAPELIEI-GGEAVEGLLFTTHYHPKAASNPVAKKFVEVY----------------KEKYGK-------------- 284 (366)
T ss_dssp CGGGCSTHHHHH-HGGGGTTCEEEESCCGGGCCSHHHHHHHHHH----------------HHHHSS--------------
T ss_pred eCCcCCHHHHHH-HhHHhCCeEEEEeeCCCCCCCHHHHHHHHHH----------------HHHHCC--------------
Confidence 888875433211 12234566655532 11134455555421 111110
Q ss_pred CCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhccee-eccCCCCeEE
Q psy1666 230 STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVS-FQGLSEDHFK 308 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~-F~g~~G~~V~ 308 (981)
.........|||++.+|+||++.- ..++..|.+.|++++ |.|.+| ++.
T Consensus 285 ---------------~p~~~~~~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~~g~~G-~i~ 333 (366)
T 3td9_A 285 ---------------EPAALNALGYDAYMVLLDAIERAG---------------SFDREKIAEEIRKTRNFNGASG-IIN 333 (366)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCSEEETTE-EEC
T ss_pred ---------------CCchhHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCcccce-eeE
Confidence 001124568999999999998762 146789999999998 999999 599
Q ss_pred ecCCCCCCceeEEEEEEEcCCCcEEEEEEEEEECCe
Q psy1666 309 FDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGE 344 (981)
Q Consensus 309 FD~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~~~~ 344 (981)
||++|++...+.|++++ +| .++.||.|++++
T Consensus 334 f~~~g~~~~~~~i~~~~---~g--~~~~v~~~~~~~ 364 (366)
T 3td9_A 334 IDENGDAIKSVVVNIVK---NG--SVDFEAVINPDD 364 (366)
T ss_dssp BCTTSCBCCCEEEEEEE---TT--EEEEEEEECGGG
T ss_pred ECCCCCccCceEEEEEE---CC--EEEEEEecChhh
Confidence 99999998889999986 44 578899998643
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=98.68 E-value=2.9e-07 Score=103.86 Aligned_cols=196 Identities=11% Similarity=0.101 Sum_probs=132.6
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...++++. +.++.+|++.+++..+..++.++.+.++.. .|+
T Consensus 165 ~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-----d~~~~~~~l~-~~~~dai~~~~~~~~a~~~~~~~~~~g~~v--p~~ 236 (375)
T 4evq_A 165 EEMVSGFKKSFTAGKGEVVKDITIAFPDV-----EFQSALAEIA-SLKPDCVYAFFSGGGALKFIKDYAAANLGI--PLW 236 (375)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCC-----CCHHHHHHHH-HHCCSEEEEECCTHHHHHHHHHHHHTTCCC--CEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEEecCCCCc-----cHHHHHHHHH-hcCCCEEEEecCcchHHHHHHHHHHcCCCc--eEE
Confidence 44567788888999999988887765432 3445555553 335677888888899999999988887753 356
Q ss_pred EeccCcccccccCCCccceeeEEEEEecCC--CCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQAN--PVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~--~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
++ +|........ .....+|.+...+... ..|..++|.+.. +..++..
T Consensus 237 ~~-~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~----------------~~~~~~~------------- 285 (375)
T 4evq_A 237 GP-GFLTDGVEAA-AGPAGDGIKTVLHYVSDLDNAENQAFVKSF----------------EAAYKIP------------- 285 (375)
T ss_dssp EE-GGGTTTTHHH-HGGGGTTCEEEESCCTTCCSHHHHHHHHHH----------------HHHHSSC-------------
T ss_pred ec-CcCCHHHHHh-hhhhcCCeEEeeccCCCCCCHHHHHHHHHH----------------HHHHCCC-------------
Confidence 55 4743332221 1234567776655432 245567776432 1112100
Q ss_pred CCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEe
Q psy1666 230 STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKF 309 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~F 309 (981)
........|||++++|+||++.-. ...++.+|.+.|++++|.|.+| ++.|
T Consensus 286 ----------------p~~~~~~~yda~~~~~~al~~~g~-------------~~~~~~~l~~~l~~~~~~g~~G-~i~f 335 (375)
T 4evq_A 286 ----------------PDVFAVQGWDAGQLLDAGVKAVGG-------------DVAKRKELNAAMAAASFASPRG-PFKL 335 (375)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHHTTT-------------CTTCHHHHHHHHHTCEEEETTE-EEEB
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHhCC-------------CCCCHHHHHHHHhcCCcccCCc-ceeE
Confidence 011245689999999999987521 1256889999999999999999 5999
Q ss_pred cCCCCCCceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 310 DKDGDGPARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 310 D~nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
|++|++...|.|++|+ +| .++.||.+.
T Consensus 336 ~~~g~~~~~~~i~~~~---~g--~~~~v~~~~ 362 (375)
T 4evq_A 336 SAAHNPVQNFYLRELK---GG--KSVNLGLAA 362 (375)
T ss_dssp CTTSCBCCCEEEEEEE---TT--EEEEEEEEE
T ss_pred CCCCCccccEEEEEEE---CC--CcEEeeehh
Confidence 9999999899999986 34 577788775
No 31
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=98.65 E-value=4.1e-07 Score=101.80 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...++++. .+++.+|++.++...+..++.++.+.++.. .|+
T Consensus 152 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----d~~~~~~~l~-~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~--~~~ 223 (356)
T 3ipc_A 152 QGLADETKKAANAAGVTEVMYEGVNVGDK-----DFSALISKMK-EAGVSIIYWGGLHTEAGLIIRQAADQGLKA--KLV 223 (356)
T ss_dssp HHHHHHHHHHHHHTTCCCSEEEECCTTCC-----CCHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHTCCC--EEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeCCCCC-----CHHHHHHHHH-hcCCCEEEEccCchHHHHHHHHHHHCCCCC--cEE
Confidence 44567788888899999988777764332 3445566653 355778888888888999999988888765 588
Q ss_pred EeccCcccccccCCCccceeeEEEEEecC-CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQA-NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYS 230 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~-~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~ 230 (981)
++++|........ .....+|.+...+.. ...|..++|.+.. +.. .-
T Consensus 224 ~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~f~~~~----------------~~~-~~--------------- 270 (356)
T 3ipc_A 224 SGDGIVSNELASI-AGDAVEGTLNTFGPDPTLRPENKELVEKF----------------KAA-GF--------------- 270 (356)
T ss_dssp ECGGGCSHHHHHH-HGGGGTTCEEEESCCGGGCGGGHHHHHHH----------------HHT-TC---------------
T ss_pred EeccccCHHHHHH-hhHHhCCEEEEecCCCCCChhHHHHHHHH----------------HHc-CC---------------
Confidence 8888875433211 112245655444322 2345556665422 111 10
Q ss_pred CCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEec
Q psy1666 231 TECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD 310 (981)
Q Consensus 231 ~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD 310 (981)
.........|||++++|+||++.- ..++..|.+.|++.+|.|.+| ++.||
T Consensus 271 --------------~p~~~~~~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~g~~G-~~~f~ 320 (356)
T 3ipc_A 271 --------------NPEAYTLYSYAAMQAIAGAAKAAG---------------SVEPEKVAEALKKGSFPTALG-EISFD 320 (356)
T ss_dssp --------------CCCTTHHHHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCCTTS-SBCBC
T ss_pred --------------CcchhHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCCcce-eeEEC
Confidence 001134578999999999998762 146788999999999999999 59999
Q ss_pred CCCCCCc-eeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 311 KDGDGPA-RYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 311 ~nGD~~~-~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
++|++.. .|.|++|+..++|. |+.+..|.
T Consensus 321 ~~g~~~~~~~~i~~~~~~~~G~--~~~~~~~~ 350 (356)
T 3ipc_A 321 EKGDPKLPGYVMYEWKKGPDGK--FTYIQQGS 350 (356)
T ss_dssp TTSCBCCCCCEEEEEEECTTSS--EEEEEC--
T ss_pred CCCCccCCCeEEEEEEECCCCc--EEEEeccc
Confidence 9999875 79999998655564 56666665
No 32
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=98.62 E-value=3.9e-08 Score=111.78 Aligned_cols=198 Identities=11% Similarity=0.050 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHhC--CeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceE
Q psy1666 72 TTAFEELEVLLAKS--SICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFS 149 (981)
Q Consensus 72 ~~~~~~l~~~~~~~--gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~v 149 (981)
+...+.|++.+++. |++|...+.++.... ++...++++ +.+++.+|++.+....+..++.++.+.++.+. +
T Consensus 156 ~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~-----d~~~~~~~i-~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~-~ 228 (387)
T 3i45_A 156 QSAVARFKELLLAARPEVTFVAEQWPALYKL-----DAGPTVQAL-QQAEPEGLFNVLFGADLPKFVREGRVRGLFAG-R 228 (387)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEECCCTTCC-----CHHHHHHHH-HHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT-C
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeecCCCCCc-----CHHHHHHHH-HhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC-C
Confidence 44567788888887 899988887765432 455666665 44567888888888889999999988888765 5
Q ss_pred EEEeccCcccccccCCCccceeeEEEEE-e-cCCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCC
Q psy1666 150 WVGSDGWSARGLVSDGSEAEVEGTLSLQ-P-QANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNS 227 (981)
Q Consensus 150 WI~s~~W~~~~~~~~~~~~~~~G~l~~~-~-~~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~ 227 (981)
|+.+..+.....+........+|.+... + .....|..++|.+. |+..++-
T Consensus 229 ~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~~~------------ 280 (387)
T 3i45_A 229 QVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEA----------------YRARWKE------------ 280 (387)
T ss_dssp EEEEEEEESHHHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHH----------------HHHHHSS------------
T ss_pred eEEeecCCChHHHHHhhhhccCceEEecccccCCCCHHHHHHHHH----------------HHHHHCC------------
Confidence 5554433222221111112345654432 1 12345556666542 2222210
Q ss_pred CCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeE
Q psy1666 228 HYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHF 307 (981)
Q Consensus 228 ~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V 307 (981)
.........||||+++|+||++.- ..++.+|.+.|++++|.|.+| ++
T Consensus 281 -----------------~p~~~~~~~Yda~~~~a~Al~~ag---------------~~~~~~v~~al~~~~~~g~~G-~i 327 (387)
T 3i45_A 281 -----------------DPFVGSLVGYNTLTAMAVAFEKAG---------------GTESETLVETLKDMAFSTPMG-PL 327 (387)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHTTTCEEEETTE-EE
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCCcCCCC-Ce
Confidence 001124568999999999998761 246789999999999999999 59
Q ss_pred EecC-CCCCCceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 308 KFDK-DGDGPARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 308 ~FD~-nGD~~~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
.||+ +++......|.+++.. +| ..++|.|.
T Consensus 328 ~f~~~~~~~~~~~~i~~~~~~-~g---~~~i~~w~ 358 (387)
T 3i45_A 328 SFRASDHQSTMGAWVGRTALR-DG---KGVMVDWR 358 (387)
T ss_dssp EBCTTTCBBCCCEEEEEEEEE-TT---EEEEEEEE
T ss_pred EEcCCCCccccceeEEEEEee-CC---ceeEEeeE
Confidence 9996 6666667777777643 23 36788886
No 33
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=98.62 E-value=1.1e-08 Score=117.60 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=119.3
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcc-hhhHHHHHHHHHhhccCCceEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGS-DQEVAGVMRAVRRLNATGSFSW 150 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s-~~~a~~~~~~~~~~~l~g~~vW 150 (981)
+...+.|++.+++.|++|...+.++.... ++...+.++ +.+++++|++.+. ...+..++.++.+.++. ..|
T Consensus 178 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~-----d~~~~l~~i-~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~--~~~ 249 (419)
T 3h5l_A 178 VNIANAIRDGAGEYGYDVSLFETVAIPVS-----DWGPTLAKL-RADPPAVIVVTHFYPQDQALFMNQFMTDPTN--SLV 249 (419)
T ss_dssp HHHHHHHHHHGGGGTCEEEEEEECCSSCS-----CCHHHHHHH-HHSCCSEEEECCCCHHHHHHHHHHHTTSCCS--CEE
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCCCc-----cHHHHHHHH-HhcCCCEEEEccccCchHHHHHHHHHHcCCC--ceE
Confidence 45677888888899999999998875432 456677776 4456777777655 35678888888887773 378
Q ss_pred EEeccCcccccccCCCccceeeEEEEEec-CCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 151 VGSDGWSARGLVSDGSEAEVEGTLSLQPQ-ANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 151 I~s~~W~~~~~~~~~~~~~~~G~l~~~~~-~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
+++++|........ .....+|.+...+. ....|..++|.+. |+..+.-.
T Consensus 250 ~~~~~~~~~~~~~~-~g~~~~G~~~~~~~~~~~~~~~~~f~~~----------------~~~~~g~~------------- 299 (419)
T 3h5l_A 250 YLQYGASLAAFRDI-AGDNSVGVTYATVLGTLQDEMGDAFAKA----------------YKERYGDL------------- 299 (419)
T ss_dssp EECSGGGSHHHHHH-HGGGGTTCEEEESSCCCSSHHHHHHHHH----------------HHHHHCTT-------------
T ss_pred EecCCCCcHHHHHh-hhhhcCceEEeecCCCCCCHHHHHHHHH----------------HHHHhCCC-------------
Confidence 88988875533221 11234565543332 2233445555542 22222100
Q ss_pred CCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEe
Q psy1666 230 STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKF 309 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~F 309 (981)
+ ........||||+++|+|+++.....+ ...+.++..|.++|++++|.|.+| .+.|
T Consensus 300 -------------p--~~~~a~~~Yda~~~~~~a~~~a~~~~~--------~g~~~~~~~l~~al~~~~~~g~~G-~i~f 355 (419)
T 3h5l_A 300 -------------S--STASGCQTYSALYAYSIAAALAGGPGA--------PYDDVQNKAVADRLRSLIFRGPVG-TMRF 355 (419)
T ss_dssp -------------S--CHHHHHHHHHHHHHHHHHHHHTTSCCC--------TTCHHHHHHHHHHHHHCEEEETTE-EEEB
T ss_pred -------------C--CcchhHHHHHHHHHHHHHHHHhcCCcc--------CCCccCHHHHHHHHHhCCcccCce-EEEE
Confidence 0 001345689999999999987632000 011245778999999999999999 5999
Q ss_pred cCCCCCCcee
Q psy1666 310 DKDGDGPARY 319 (981)
Q Consensus 310 D~nGD~~~~Y 319 (981)
|++|+....|
T Consensus 356 ~~~g~~~~~~ 365 (419)
T 3h5l_A 356 HADTQSAWSY 365 (419)
T ss_dssp CTTTCBBCEE
T ss_pred CCCCCccccc
Confidence 9999965433
No 34
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.48 E-value=6.6e-07 Score=101.25 Aligned_cols=203 Identities=9% Similarity=0.027 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.|++.+++.|++|...+.++.... ++...+.++ +.+++.+|++.+....+..++.++.+.++.++..|+
T Consensus 156 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-----d~~~~l~~i-~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 229 (379)
T 3n0w_A 156 DLMNAAIRRELTAGGGQIVGSVRFPFETQ-----DFSSYLLQA-KASGAQLIVSTSGGAANINIMKQAREFGLPSKTQKV 229 (379)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEECTTCC-----CCHHHHHHH-HHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeCCCCCC-----CHHHHHHHH-HHCCCCEEEEecccchHHHHHHHHHHcCCCCCCcEE
Confidence 44577888888899999999888875432 344556665 344577888887778888899888888887653577
Q ss_pred EeccCcccccccCCCccceeeEEEEEecC-CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQA-NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYS 230 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~-~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~ 230 (981)
++.+|...... .......+|.+...+.. ...|..++|.+.. +..++-
T Consensus 230 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~----------------~~~~g~--------------- 277 (379)
T 3n0w_A 230 GGMIDILTDVK-SAGLRVMQGQEYATSFYWNMDDRTRAFAKRF----------------YAKMGK--------------- 277 (379)
T ss_dssp ECCBCCHHHHH-HHCHHHHTTCEEEESCCTTSSHHHHHHHHHH----------------HHHHSS---------------
T ss_pred EecccchHHHH-hhCHHhhCCeEEEeeecCCCCHHHHHHHHHH----------------HHHHCC---------------
Confidence 77666543221 11112345665554422 1234455555421 111110
Q ss_pred CCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEec
Q psy1666 231 TECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD 310 (981)
Q Consensus 231 ~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD 310 (981)
.........||||+.+|+||++.- ..++..|.+.|++++|.+..|..+.||
T Consensus 278 --------------~p~~~~~~~Yda~~~~~~Al~~ag---------------~~~~~~v~~aL~~~~~~~~~G~~~~f~ 328 (379)
T 3n0w_A 278 --------------MPTNNQAGGYSAALQYLKAVNAIG---------------SKDPQKVFAYLKTIKFDDAVTRHGTLR 328 (379)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCSSSCCSBEEC
T ss_pred --------------CCChHHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCccccCCCceeEC
Confidence 001124578999999999998862 236788999999999999998779999
Q ss_pred CCCCCCceeEEEEEEEcCCCcE---EEEEEEEEE
Q psy1666 311 KDGDGPARYNIIHFKQIRPGVY---QWVQVGEYL 341 (981)
Q Consensus 311 ~nGD~~~~YdI~n~q~~~~g~~---~~v~VG~~~ 341 (981)
++|++...+.|++++...++.. .+..|..+.
T Consensus 329 ~~g~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~ 362 (379)
T 3n0w_A 329 PGGRLVRDMYLVRAKKPEDQKGDWDYYDVVATIG 362 (379)
T ss_dssp TTSBEECCEEEEEECCGGGCCSTTCCEEEEEEEC
T ss_pred CCCCcccceEEEEEEchhhccCccchhheecccC
Confidence 9999988899999875332221 245555553
No 35
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=98.47 E-value=1.6e-06 Score=96.98 Aligned_cols=195 Identities=13% Similarity=0.149 Sum_probs=128.3
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...++++.. .++.+|++.+....+..++.++.+.++.. .|+
T Consensus 153 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~-~~~d~i~~~~~~~~a~~~~~~~~~~g~~~--p~~ 224 (358)
T 3hut_A 153 LSSAQAFRKAFELRGGAVVVNEEVPPGNR-----RFDDVIDEIED-EAPQAIYLAMAYEDAAPFLRALRARGSAL--PVY 224 (358)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCC-----CCHHHHHHHHH-HCCSEEEEESCHHHHHHHHHHHHHTTCCC--CEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEecCCCCc-----cHHHHHHHHHh-cCCCEEEEccCchHHHHHHHHHHHcCCCC--cEE
Confidence 44567788888899999988877765332 34445555533 34567888887778899999988888754 588
Q ss_pred EeccCcccccccCCCccceeeEEEEEecC--CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQA--NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~--~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
++++|........ .....+|.+...+.. ...|..++|.+.. ...++-
T Consensus 225 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~----------------~~~~~~-------------- 273 (358)
T 3hut_A 225 GSSALYSPKFIDL-GGPAVEGVRLATAFVLGASDPVVVEFVSAY----------------ETLYGA-------------- 273 (358)
T ss_dssp ECGGGCSHHHHHH-HGGGGTTCEEEESCCTTCCSHHHHHHHHHH----------------HHHHSS--------------
T ss_pred ecCcccCHHHHHH-hHHhhCCeEEEeccCCCCCCHHHHHHHHHH----------------HHHHCC--------------
Confidence 8888865433221 112346666655432 2344556665422 111110
Q ss_pred CCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccH-HHHhhcce-eeccCCCCeE
Q psy1666 230 STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPE-LLKYLRKV-SFQGLSEDHF 307 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~q-Ll~~Lk~V-~F~g~~G~~V 307 (981)
.........|||++.+|.||++.- +.++.+ +.+.|+++ +|.|.+| ++
T Consensus 274 ---------------~p~~~~~~~yda~~~~~~al~~ag---------------~~~~~~~~~~~l~~~~~~~g~~G-~~ 322 (358)
T 3hut_A 274 ---------------IPTLFAAHGYDAVGIMLAAVGRAG---------------PEVTRESLRDALAATDRYAGVTG-IT 322 (358)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHC---------------TTCCHHHHHHHHHTCCSEEETTE-EE
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHhcCCCcCCce-ee
Confidence 001134568999999999998862 234677 99999999 9999999 79
Q ss_pred EecCCCCC-CceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 308 KFDKDGDG-PARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 308 ~FD~nGD~-~~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
.||++|++ ...|.|++++ +| .++.+..+.
T Consensus 323 ~f~~~g~~~~~~~~i~~~~---~G--~~~~~~~~~ 352 (358)
T 3hut_A 323 RFDPETRETTKILTRLVVR---EG--DFRVIDREG 352 (358)
T ss_dssp EECTTTCCEEECCEEEEEE---TT--EEEEC----
T ss_pred EECCCCCcCCCceEEEEEE---CC--EEEEecccc
Confidence 99999998 6789999986 45 455555443
No 36
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=98.44 E-value=1.3e-06 Score=98.68 Aligned_cols=201 Identities=7% Similarity=0.027 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|++|...+.++.... ++...+.++ +.+++.+|++.+....+..++.++.+.++.+...++
T Consensus 154 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-----d~~~~l~~i-~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~i~ 227 (375)
T 3i09_A 154 KALEKNTADVVKANGGKVLGEVRHPLSAS-----DFSSFLLQA-QSSKAQILGLANAGGDTVNAIKAAKEFGITKTMKLA 227 (375)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCS-----CCHHHHHHH-HHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTCEEE
T ss_pred HHHHHHHHHHHHHcCCEEeeeeeCCCCCc-----cHHHHHHHH-HhCCCCEEEEecCchhHHHHHHHHHHcCCCcCceEE
Confidence 44567888888999999998888875432 345566665 345678888888888888899888888876643345
Q ss_pred EeccCcccccccCCCccceeeEEEEEecC-CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQA-NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYS 230 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~-~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~ 230 (981)
+.+.|... . ........+|.+...+.. ...|..++|.+. |+..++-
T Consensus 228 g~~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~----------------~~~~~g~--------------- 274 (375)
T 3i09_A 228 ALLMFIND-V-HALGLETTQGLVLTDSWYWNRDQASRQWAQR----------------YFAKMKK--------------- 274 (375)
T ss_dssp ESSCCHHH-H-HHHCHHHHTTCEEEESCCTTSSHHHHHHHHH----------------HHHHHSS---------------
T ss_pred ecccchhh-H-hhhChhhhCCeeeeeeecCCCCHHHHHHHHH----------------HHHHHCC---------------
Confidence 44444321 1 111112345665544321 123445555432 1111110
Q ss_pred CCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEec
Q psy1666 231 TECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD 310 (981)
Q Consensus 231 ~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD 310 (981)
.........|||++.+|+||++.- +.++..|.+.|++++|.|..|. +.||
T Consensus 275 --------------~p~~~a~~~Yda~~~~~~Al~~ag---------------~~~~~~l~~aL~~~~~~~~~G~-~~f~ 324 (375)
T 3i09_A 275 --------------MPSSLQAADYSSVTTYLKAVQAAG---------------STDSDKVMAQLKKMKIDDFYAK-GYIR 324 (375)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTSCEESSSCE-EEEC
T ss_pred --------------CCcHHHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhCCCccCCCCc-eEEC
Confidence 001123568999999999998862 2367889999999999999996 9999
Q ss_pred CCCCCCceeEEEEEEEcCCCcE---EEEEEEEEE
Q psy1666 311 KDGDGPARYNIIHFKQIRPGVY---QWVQVGEYL 341 (981)
Q Consensus 311 ~nGD~~~~YdI~n~q~~~~g~~---~~v~VG~~~ 341 (981)
++|++...+.|++++...++.. .+..|..+.
T Consensus 325 ~~g~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~ 358 (375)
T 3i09_A 325 TDGSMIHDMYLMEVKKPSESKEPWDYYKVVATIP 358 (375)
T ss_dssp TTSBEECCEEEEEECCGGGCCSTTCCEEEEEEEC
T ss_pred CCCCeeeeeEEEEEecccccccccchheeeeecC
Confidence 9999988888998874332221 245555553
No 37
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=98.38 E-value=1.5e-06 Score=98.84 Aligned_cols=93 Identities=22% Similarity=0.367 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHh-hccCCCCCCCCCCC-CChhhHhhhhccccccCCCCCeEEeccCCCC-cceeeEEEeEE
Q psy1666 673 LQFVSDAVMAFSIALDHMHAD-LCQGKVGLCDAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDG-PARYNIIHFKQ 749 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~-~c~~~~~~c~~~~~-~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~-~~~YdI~n~~~ 749 (981)
...+|||||++|+|||++... .+......|..... .++.+|.++|++++|.|.+| .+.||++||+ ...|+|+|++.
T Consensus 285 a~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i~~~~~ 363 (393)
T 3om0_A 285 AALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTG-RVEFNSKGQRTNYTLRILEKSR 363 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTE-EECBCTTSCBCSCEEEEEEEET
T ss_pred HHHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccc-eEEeCCCCcccceeEEEEEecc
Confidence 357999999999999988421 12222345754332 35668999999999999999 6999999998 47999999972
Q ss_pred cCCCcEEEEEEEEEEC-ceEEEe
Q psy1666 750 IRPGVYQWVQVGEYLE-GELRLN 771 (981)
Q Consensus 750 ~~~~~~~~~~VG~~~~-~~l~in 771 (981)
+ .+++||+|++ .+|.++
T Consensus 364 --~---g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 364 --Q---GHREIGVWYSNRTLAMN 381 (393)
T ss_dssp --T---EEEEEEEEECC------
T ss_pred --C---CceEeeeEcCCCCcccc
Confidence 2 3789999986 356554
No 38
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.33 E-value=1.1e-05 Score=91.30 Aligned_cols=200 Identities=10% Similarity=0.051 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEE
Q psy1666 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVG 152 (981)
Q Consensus 73 ~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~ 152 (981)
...+.+++.+++.|+++...+.++...+ ..++...+++++. .+..+|++......+..++.++.+.++.++.+++.
T Consensus 155 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~---~~d~~~~~~~l~~-~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~ 230 (385)
T 1pea_A 155 ESNHVMRHLYRQHGGTVLEEIYIPLYPS---DDDLQRAVERIYQ-ARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIA 230 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSSCC---HHHHHHHHHHHHH-HTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCC---cchHHHHHHHHHH-CCCCEEEEecccccHHHHHHHHHHcCCCcCCceEE
Confidence 3456778888899999887766654212 2245566666643 34667777776778888999998888876434455
Q ss_pred eccCcccccccCCCccceeeEEEEEecC--CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCC
Q psy1666 153 SDGWSARGLVSDGSEAEVEGTLSLQPQA--NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYS 230 (981)
Q Consensus 153 s~~W~~~~~~~~~~~~~~~G~l~~~~~~--~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~~ 230 (981)
+.+|..... ........+|.+...+.. ...|..++|.+. |+..++..
T Consensus 231 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~g~~-------------- 279 (385)
T 1pea_A 231 SLTTSEAEV-AKMESDVAEGQVVVAPYFSSIDTPASRAFVQA----------------CHGFFPEN-------------- 279 (385)
T ss_dssp ESSCCHHHH-TTSCHHHHTTCEEEESCCTTCSSHHHHHHHHH----------------HHTTSCTT--------------
T ss_pred ecccchHHH-HhcCchhhCCeEEecccccccCCHHHHHHHHH----------------HHHHhCCC--------------
Confidence 556654322 111112456776665432 123344555432 22122100
Q ss_pred CCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEec
Q psy1666 231 TECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD 310 (981)
Q Consensus 231 ~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD 310 (981)
. .........||||+++|+||++.- ..++..|.+.|++++|.|.+| ++.||
T Consensus 280 ------------~-~~~~~~~~~yda~~~~~~Al~~ag---------------~~~~~~l~~al~~~~~~g~~G-~i~f~ 330 (385)
T 1pea_A 280 ------------A-TITAWAEAAYWQTLLLGRAAQAAG---------------NWRVEDVQRHLYDIDIDAPQG-PVRVE 330 (385)
T ss_dssp ------------C-CCCHHHHHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCEEETTE-EEEEC
T ss_pred ------------C-CCChHHHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhhCcccCCCC-CeEEc
Confidence 0 011134578999999999998862 135788999999999999998 69999
Q ss_pred CC-CCCCceeEEEEEEEcCCCcEEEEEEEEE
Q psy1666 311 KD-GDGPARYNIIHFKQIRPGVYQWVQVGEY 340 (981)
Q Consensus 311 ~n-GD~~~~YdI~n~q~~~~g~~~~v~VG~~ 340 (981)
++ +++...+.|.++. .+| .++.|...
T Consensus 331 ~~~~~~~~~~~i~~~~--~~g--~~~~v~~~ 357 (385)
T 1pea_A 331 RQNNHSRLSSRIAEID--ARG--VFQVRWQS 357 (385)
T ss_dssp TTTSCEEBCCEEEEEC--TTS--CEEEEEEC
T ss_pred CCCCccccceEEEEEc--CCC--cEEEeecC
Confidence 85 4555678888772 345 35555444
No 39
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.33 E-value=1.9e-06 Score=98.03 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHhh---cc-CCCCCCCCC--CC-CChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeE
Q psy1666 673 LQFVSDAVMAFSIALDHMHADL---CQ-GKVGLCDAM--RP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNI 744 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~~---c~-~~~~~c~~~--~~-~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI 744 (981)
..++|||||++|+|||++..+. +. .....|... .+ .++.+|+++|++++|.|.+| .+.||++||+. ..|+|
T Consensus 279 a~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~Fd~~G~~~~~~~~i 357 (389)
T 3o21_A 279 SALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTG-NIQFDTYGRRTNYTIDV 357 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTE-EECBCTTSBBCSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccce-eeeeCCCCCcccceEEE
Confidence 4589999999999999986321 00 011245321 11 23457999999999999999 79999999976 58999
Q ss_pred EEeEEcCCCcEEEEEEEEEEC-ceEE
Q psy1666 745 IHFKQIRPGVYQWVQVGEYLE-GELR 769 (981)
Q Consensus 745 ~n~~~~~~~~~~~~~VG~~~~-~~l~ 769 (981)
+||+. + .+++||+|++ .+|.
T Consensus 358 ~~~~~--~---g~~~VG~w~~~~g~~ 378 (389)
T 3o21_A 358 YEMKV--S---GSRKAGYWNEYERFV 378 (389)
T ss_dssp EEEET--T---EEEEEEEEETTTEEE
T ss_pred EEEcC--C---CceeeeEEcCCCCcc
Confidence 99962 2 3689999986 3443
No 40
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.21 E-value=1.6e-05 Score=88.66 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEEE
Q psy1666 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVG 152 (981)
Q Consensus 73 ~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI~ 152 (981)
.+....+...++.|.-|...+.++.... ++...+.++ +.+++.+|++.+...++..+++++.+.++.+. |++
T Consensus 156 yg~~~~~~~~~~~g~~vv~~~~~~~~~~-----d~~~~l~~i-~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 227 (353)
T 4gnr_A 156 YAKGIAKSFRESYKGEIVADETFVAGDT-----DFQAALTKM-KGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP--IVG 227 (353)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEECTTCC-----CCHHHHHHH-HTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC--EEE
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCC-----CHHHHHHHH-HhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc--EEE
Confidence 3444444344456888888888876443 556677776 56778889998888899999999988888764 677
Q ss_pred eccCcccccccCCCccceeeEEEEEecC---CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 153 SDGWSARGLVSDGSEAEVEGTLSLQPQA---NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 153 s~~W~~~~~~~~~~~~~~~G~l~~~~~~---~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
+++|..............+|.+...... ...|..++|.+. ++..++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~g~-------------- 277 (353)
T 4gnr_A 228 GDGFNGEEFVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDA----------------YRAKYNE-------------- 277 (353)
T ss_dssp CGGGCSHHHHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHH----------------HHHHHSS--------------
T ss_pred ecccccchhhhhhhhhhhcCccccccccCCCCCCHHHHHHHHH----------------HHHHhCC--------------
Confidence 7777654332221222334555443321 112334445432 1112210
Q ss_pred CCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcce-eeccCCCCeEE
Q psy1666 230 STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQGLSEDHFK 308 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V-~F~g~~G~~V~ 308 (981)
.........|||++.+|+|++.. .++..+.+.|+++ +|.|.+| ++.
T Consensus 278 ---------------~p~~~a~~~Yda~~~la~Ai~~a-----------------~~~~~v~~aL~~~~~~~g~~G-~i~ 324 (353)
T 4gnr_A 278 ---------------EPSTFAALAYDSVHLVANAAKGA-----------------KNSGEIKDNLAXTKDFEGVTG-QTS 324 (353)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHTTC-----------------SSHHHHHHHHHTCCCEEETTE-EEC
T ss_pred ---------------CCChhHHHHHHHHHHHHHHHhcC-----------------CCHHHHHHHHHhcCCCccCce-eEE
Confidence 00112456899999999998421 1356788999888 6999999 699
Q ss_pred ecCCCCCCceeEEEEEEEcCCCcEEEE
Q psy1666 309 FDKDGDGPARYNIIHFKQIRPGVYQWV 335 (981)
Q Consensus 309 FD~nGD~~~~YdI~n~q~~~~g~~~~v 335 (981)
||++||+...+.|++++ +|.+..+
T Consensus 325 f~~~g~~~~~~~i~~v~---~Gk~~~~ 348 (353)
T 4gnr_A 325 FDADHNTVKTAYMMTMN---NGKVEAA 348 (353)
T ss_dssp CCTTSCCCCCEEEEEEE---TTEEEEE
T ss_pred ECCCcCCcCCeEEEEEE---CCEEEEE
Confidence 99999998888888875 5644433
No 41
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=98.11 E-value=9.5e-06 Score=101.62 Aligned_cols=92 Identities=27% Similarity=0.401 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhc----cCCCCCCCCCC---CCChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeE
Q psy1666 673 LQFVSDAVMAFSIALDHMHADLC----QGKVGLCDAMR---PTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNI 744 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~~c----~~~~~~c~~~~---~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI 744 (981)
...+|||||++|+|||++..+.. ......|.... ..++.+|.++|++++|+|.+| .+.||++||+. ..|+|
T Consensus 273 a~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~I 351 (823)
T 3kg2_A 273 SALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG-NIKFDQNGKRINYTINI 351 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTE-ECCBCSSSCBCSCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCccc-CeEECCCCcccccEEEE
Confidence 45899999999999999863211 11123455431 124568999999999999999 59999999987 68999
Q ss_pred EEeEEcCCCcEEEEEEEEEEC-ceEEE
Q psy1666 745 IHFKQIRPGVYQWVQVGEYLE-GELRL 770 (981)
Q Consensus 745 ~n~~~~~~~~~~~~~VG~~~~-~~l~i 770 (981)
+|++. + .+++||.|++ ..+..
T Consensus 352 ~~~~~--~---g~~~vg~w~~~~g~~~ 373 (823)
T 3kg2_A 352 MELKT--N---GPRKIGYWSEVDKMVL 373 (823)
T ss_dssp EEECS--S---CEEEEEEEETTTEEEE
T ss_pred EEEcC--C---CCeeEEEEcCCCCcee
Confidence 99872 2 2569999986 34443
No 42
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=98.04 E-value=9.5e-06 Score=91.99 Aligned_cols=95 Identities=21% Similarity=0.411 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHh---hcc-CCCCCCCCCC--C-CChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeE
Q psy1666 673 LQFVSDAVMAFSIALDHMHAD---LCQ-GKVGLCDAMR--P-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNI 744 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~---~c~-~~~~~c~~~~--~-~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI 744 (981)
...+|||||++|+|++++..+ .|. ...+.|.... + .++.+|.++|++++|.|.+| .+.||++||+. ..|+|
T Consensus 276 aa~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i 354 (384)
T 3saj_A 276 SALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTG-NVQFNEKGRRTNYTLHV 354 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTE-EECBCTTSBBCSCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccce-eeEeCCCCCcccceEEE
Confidence 347999999999999998642 231 2234676532 1 45678999999999999999 59999999966 68999
Q ss_pred EEeEEcCCCcEEEEEEEEEEC-ceEEEecc
Q psy1666 745 IHFKQIRPGVYQWVQVGEYLE-GELRLNMS 773 (981)
Q Consensus 745 ~n~~~~~~~~~~~~~VG~~~~-~~l~in~~ 773 (981)
++++. + .+.+||.|++ ..|.++..
T Consensus 355 ~~~~~--~---g~~~VG~W~~~~gl~~~~~ 379 (384)
T 3saj_A 355 IEMKH--D---GIRKIGYWNEDDKFVPAAL 379 (384)
T ss_dssp EEEET--T---EEEEEEEEETTTEEEECCC
T ss_pred EEecc--C---CcceeEEEcCCCCccccCc
Confidence 99873 2 3678999986 46666543
No 43
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=97.93 E-value=4.8e-05 Score=86.15 Aligned_cols=203 Identities=11% Similarity=0.062 Sum_probs=130.3
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...+.++. ..++.+|++.++...+..++.++.+.++.. .|+
T Consensus 157 ~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-----d~~~~~~~l~-~~~~dav~~~~~~~~a~~~~~~~~~~g~~~--~~~ 228 (392)
T 3lkb_A 157 RAPVEDARKAARELGLQIVDVQEVGSGNL-----DNTALLKRFE-QAGVEYVVHQNVAGPVANILKDAKRLGLKM--RHL 228 (392)
T ss_dssp HTTHHHHHHHHHHHTCEEEEEEECCTTCC-----CCHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCC--EEE
T ss_pred hhHHHHHHHHHHHcCCeEEEEEeeCCCCc-----CHHHHHHHHH-hcCCCEEEEecCcchHHHHHHHHHHcCCCc--eEE
Confidence 33456788888889999988887775332 3445566653 355778888899999999999998888764 578
Q ss_pred EeccCcccccccCCCccceeeEEEEEecCC--CCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQAN--PVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHY 229 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~--~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~~~ 229 (981)
+++.|........ .....+|.+...+... +.+..++|.+. |.+ .++-
T Consensus 229 ~~~~~~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~f~~~---------------~~~-~~~~-------------- 277 (392)
T 3lkb_A 229 GAHYTGGPDLIAL-AGDAAEGFLWATSFYMAHEDTPGIRLQKE---------------IGR-KYGR-------------- 277 (392)
T ss_dssp ECGGGCSHHHHHH-HGGGGTTCEEEESBCCTTSCCHHHHHHHH---------------HHH-HTTC--------------
T ss_pred EecCcccHHHHHh-hhhhhcCeEEEEeecCCCCCchhHHHHHH---------------HHH-HhCC--------------
Confidence 7766554322211 1123466665554321 22334444432 111 1110
Q ss_pred CCCCCCcccccCCcccc-ccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhccee----ec----
Q psy1666 230 STECTTHEKLSRDTLAF-EKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVS----FQ---- 300 (981)
Q Consensus 230 ~~~Ctg~e~l~~~~~~~-~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~----F~---- 300 (981)
.+... .......|||++.++.||++.-... .+.++..|.+.|++++ |.
T Consensus 278 ------------~p~~~~~~~~~~~yda~~~~~~al~~ag~~~-----------~~~~~~~v~~aL~~~~~~~~~~~~~~ 334 (392)
T 3lkb_A 278 ------------PENFIESVNYTNGMLAAAIAVEAIRRAQERF-----------KRITNETVYQAIVGMNGPNAFKPGFA 334 (392)
T ss_dssp ------------CHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH-----------SSCCHHHHHHHHHTCCGGGCBCCSSB
T ss_pred ------------CcccccchhHHHHHHHHHHHHHHHHHhhccC-----------CCCCHHHHHHHHHhcCCCcCcccccc
Confidence 00000 0113468999999999999875310 1346788999999997 98
Q ss_pred ---cCCCCeEEecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEEC
Q psy1666 301 ---GLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLE 342 (981)
Q Consensus 301 ---g~~G~~V~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~~ 342 (981)
|.+| ++.||++|+.. ..+.|++++ +| .++.||.|..
T Consensus 335 ~~~G~~G-~i~f~~~~~~~~~~~~i~~~~---~g--~~~~v~~w~~ 374 (392)
T 3lkb_A 335 VSTKQGV-EIDFTKSEHTGAEGLRILEAK---GG--RFVPVTEPFT 374 (392)
T ss_dssp CCCSSSC-SBCCCSSCCEEECCBEEEEEE---TT--EEEECSCCBC
T ss_pred cccccce-eeEeCCCCcCCcccEEEEEEe---CC--EEEEeccccc
Confidence 8888 69999988864 468888885 34 5788999964
No 44
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.90 E-value=1.7e-05 Score=89.58 Aligned_cols=92 Identities=26% Similarity=0.455 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHhhcc----CCCCCC--CCCCC-CChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeE
Q psy1666 673 LQFVSDAVMAFSIALDHMHADLCQ----GKVGLC--DAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNI 744 (981)
Q Consensus 673 ~~~vydAVyaiAhALh~~l~~~c~----~~~~~c--~~~~~-~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI 744 (981)
....|||||++|+|++++..+.-. ...+.| ....+ .++.+|.++|++++|.|.+| .+.||++||+. ..|+|
T Consensus 273 aa~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~~~~~~~i 351 (376)
T 3hsy_A 273 SALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG-NIKFDQNGKRINYTINI 351 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTE-EECBCTTSBBCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCcc-ceeECCCCCCccceEEE
Confidence 357999999999999998632100 011235 21111 12347999999999999999 89999999965 69999
Q ss_pred EEeEEcCCCcEEEEEEEEEEC-ceEEE
Q psy1666 745 IHFKQIRPGVYQWVQVGEYLE-GELRL 770 (981)
Q Consensus 745 ~n~~~~~~~~~~~~~VG~~~~-~~l~i 770 (981)
++++ .+ .+++||.|++ .+|..
T Consensus 352 ~~~~--~~---g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 352 MELK--TN---GPRKIGYWSEVDKMVV 373 (376)
T ss_dssp EEEE--TT---EEEEEEEEETTTEEEE
T ss_pred EEec--CC---CceEEEEEcCCCCcee
Confidence 9996 22 3689999986 34543
No 45
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=97.87 E-value=0.00035 Score=78.50 Aligned_cols=204 Identities=7% Similarity=0.030 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcc-hhhHHHHHHHHHhhccCC-ceE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGS-DQEVAGVMRAVRRLNATG-SFS 149 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s-~~~a~~~~~~~~~~~l~g-~~v 149 (981)
....+.|++.+++.|+.|...+.+|.... ++...+.++ +.+++.+|+++.. ......++..+.+.++.. ...
T Consensus 153 ~~~~~~~~~~~~~~g~~vv~~~~~~~~~~-----d~~~~l~~i-~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 226 (371)
T 4f06_A 153 IDAETAFKKTFEAEGGKVVEAVRMPLSTT-----DFGPIMQRI-KNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVK 226 (371)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCC-----CCHHHHHHH-HHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCE
T ss_pred hhHHHHHHHHHHhcCCceEEEEecCcccc-----cHHHHHHHH-HhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcE
Confidence 45567788888999999999999986543 455667776 4455677766654 355666777777766643 234
Q ss_pred EEEeccCcccccccCCCccceeeEEEEEecCC--CCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCC
Q psy1666 150 WVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN--PVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNS 227 (981)
Q Consensus 150 WI~s~~W~~~~~~~~~~~~~~~G~l~~~~~~~--~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~ 227 (981)
++....+.....+.. ......|.+...+... ..|.-++|.+ .++..+.-
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~p~~~~f~~----------------~~~~~~~~------------ 277 (371)
T 4f06_A 227 LMSTGDVVTEPDLPN-IGEAGLGILSTYHYAVSHDSPENKAFLA----------------LLQKGGAK------------ 277 (371)
T ss_dssp EEEEGGGGCGGGHHH-HCGGGTTCEEEESCCTTCCSHHHHHHHH----------------HHHHTTCC------------
T ss_pred EEEecccCCHHHHHh-cccccCceEEeeccccCCCChhHHHHHH----------------HHHHhcCC------------
Confidence 554433322222111 1122345555444221 2233344432 12211110
Q ss_pred CCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeE
Q psy1666 228 HYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHF 307 (981)
Q Consensus 228 ~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V 307 (981)
.. .........|||++.++.||++.- .+.++..+.+.|++++|.|..| ++
T Consensus 278 -----------~~----~~~~~a~~~Yda~~~l~~Ai~~~a--------------g~~d~~~v~~al~~~~~~~~~G-~i 327 (371)
T 4f06_A 278 -----------LD----EVTMTSVAAYDGARLIYKMIEATS--------------GKSDPDKAIAAVKGMKWVSPRG-EV 327 (371)
T ss_dssp -----------GG----GCCHHHHHHHHHHHHHHHHHHHTT--------------TSCCHHHHHHHHTTCEEEETTE-EE
T ss_pred -----------CC----CccchHHHHHHHHHHHHHHHHHhc--------------CCCCHHHHHHHHhCCCeeCCcE-EE
Confidence 00 001123468999999999996531 1346788999999999999999 69
Q ss_pred EecCCCCCC-ceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 308 KFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 308 ~FD~nGD~~-~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
.||++|+.. ..+.|.+++. .+|.+.++.++.+.
T Consensus 328 ~fd~~~~~~~~~~~i~~v~~-~dGk~v~~~~~~~~ 361 (371)
T 4f06_A 328 SIDPETRHITQNVYLREVEK-VDGKLINRELETFK 361 (371)
T ss_dssp EECTTTCBEEEEEEEEEEEE-ETTEEEEEEEEEEE
T ss_pred EEcCCCCcccCCEEEEEEEe-cCCEEEEEEEEEEe
Confidence 999877653 4566777764 35777777887775
No 46
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=97.85 E-value=0.00011 Score=82.12 Aligned_cols=187 Identities=10% Similarity=0.052 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...+.++. .+++.+|++.++...+..++.++.+.++.. -|+
T Consensus 155 ~~~~~~~~~~~~~~G~~v~~~~~~~~~~~-----d~~~~~~~l~-~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~--~~i 226 (364)
T 3lop_A 155 KEAITGVERTLKAHALAITAMASYPRNTA-----NVGPAVDKLL-AADVQAIFLGATAEPAAQFVRQYRARGGEA--QLL 226 (364)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEECTTSC-----CCHHHHHHHH-HSCCSEEEEESCHHHHHHHHHHHHHTTCCC--EEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCc-----cHHHHHHHHH-hCCCCEEEEecCcHHHHHHHHHHHHcCCCC--eEE
Confidence 34567788888999999987777765432 3455666653 355778888888888999999998888765 478
Q ss_pred EeccCcccccccCCCccceeeEEEEE--e--cCCCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQ--P--QANPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNS 227 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~--~--~~~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~~~~~ 227 (981)
+.++|...........+..+|.+... | .....|..++|.+.. +..+.-.
T Consensus 227 ~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~----------------~~~~~~~----------- 279 (364)
T 3lop_A 227 GLSSIDPGILQKVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRAR----------------AAVGAKD----------- 279 (364)
T ss_dssp ECTTSCHHHHHHHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHH----------------HHHTCTT-----------
T ss_pred EeccCChHHHHHHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHH----------------HHhcCCC-----------
Confidence 88877654332211103345655443 2 123345566665432 2111100
Q ss_pred CCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcce-eecc-CCCC
Q psy1666 228 HYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQG-LSED 305 (981)
Q Consensus 228 ~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V-~F~g-~~G~ 305 (981)
..........|||++.++.||++.- ...++..|.+.|+++ +|.+ ..|
T Consensus 280 ----------------~~p~~~a~~~yda~~~~~~al~~ag--------------~~~~~~~v~~aL~~~~~~~~~~~g- 328 (364)
T 3lop_A 280 ----------------VDLSFRAVEGFVAAKVLAEAIRRAG--------------PKPTREQVRHALTELRDYDVGGGF- 328 (364)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHHHHHHHC--------------SSCCHHHHHHHHHTCEEEESSTTC-
T ss_pred ----------------CCCChHHHHHHHHHHHHHHHHHHhC--------------CCCCHHHHHHHHHhcCCccCCCCe-
Confidence 0001123568999999999998761 134678899999999 7998 777
Q ss_pred eEEecCCCCCCce-eEEEEE
Q psy1666 306 HFKFDKDGDGPAR-YNIIHF 324 (981)
Q Consensus 306 ~V~FD~nGD~~~~-YdI~n~ 324 (981)
++.||+++..... ..|..+
T Consensus 329 ~i~f~~~~~~~~~~~~i~~~ 348 (364)
T 3lop_A 329 TVDFTDRSRPGSHYIELGVV 348 (364)
T ss_dssp EEECSSTTSCSCCCCEEEEE
T ss_pred eeecCCCCcCCcceEEEEEE
Confidence 7999998765543 344443
No 47
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=97.77 E-value=7e-05 Score=84.84 Aligned_cols=204 Identities=10% Similarity=0.059 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHH--HhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTK--LMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFS 149 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~--li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~v 149 (981)
+...+.+++.+++.|++|...+.++.... ++...+.+ + +.+++.+|++.+....+..++.++.+.++.. .
T Consensus 156 ~~~~~~~~~~l~~~G~~v~~~~~~~~~~~-----d~~~~~~~~~l-~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~--~ 227 (391)
T 3eaf_A 156 RSPIGAIKKAAPSLGLQVVGDYDLPLRAT-----EADAERIAREM-LAADPDYVWCGNTISSCSLLGRAMAKVGLDA--F 227 (391)
T ss_dssp HTTHHHHHHHTGGGTEEEEEEEECCTTCC-----HHHHHHHHHHH-HTTCCSEEEECSCHHHHHHHHHHHHHHTCCC--E
T ss_pred HHHHHHHHHHHHHcCCceeeeeccCCCCc-----CHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHHHHHHCCCCc--e
Confidence 44567788888899999998888875432 45556666 5 4567888888888788888898888888865 3
Q ss_pred EEEeccCcccccccCCCccceee-EEEEEecC-----CCCCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCCCC
Q psy1666 150 WVGSDGWSARGLVSDGSEAEVEG-TLSLQPQA-----NPVKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRT 223 (981)
Q Consensus 150 WI~s~~W~~~~~~~~~~~~~~~G-~l~~~~~~-----~~ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~~~ 223 (981)
|++++.+....... ......+| .+...+.. ...|. .+|.+. |...++-.
T Consensus 228 ~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~----------------~~~~~~~~------- 282 (391)
T 3eaf_A 228 LLTNVWGFDERSPQ-LIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFE----------------AARMNGVS------- 282 (391)
T ss_dssp EEECGGGCSTTHHH-HHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHH----------------HHHHTTCC-------
T ss_pred EEEeccCCCHHHHH-hhhhhccCcEEEEEEecCcccCCCCch-hHHHHH----------------HHHHhCCC-------
Confidence 56654332322221 11233567 66655433 11222 333321 12122100
Q ss_pred CCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeec--c
Q psy1666 224 PYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQ--G 301 (981)
Q Consensus 224 ~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~--g 301 (981)
.+ .........|||++.+|.||++...... ...++..|.+.|++.+|. |
T Consensus 283 ------------------~p-~~~~~~~~~yda~~~l~~Al~~a~~~g~----------~~~~~~~v~~aL~~~~~~~~G 333 (391)
T 3eaf_A 283 ------------------ED-QINLRVVQGFVNVWLLIKAIESVTSQDL----------QERGGEALKEALEANTFDLGG 333 (391)
T ss_dssp ------------------GG-GCCHHHHHHHHHHHHHHHHHTTSCHHHH----------HHHTHHHHHHHHHHCCBCSTT
T ss_pred ------------------Cc-ccccHHHHHHHHHHHHHHHHHHHHhcCC----------CCCCHHHHHHHHHhCCCCCCC
Confidence 00 0011235689999999999976521100 023567899999998898 8
Q ss_pred CCCCeEEecCC-CCCCceeEEEEEEEcCCCcEEEEEEEEEE
Q psy1666 302 LSEDHFKFDKD-GDGPARYNIIHFKQIRPGVYQWVQVGEYL 341 (981)
Q Consensus 302 ~~G~~V~FD~n-GD~~~~YdI~n~q~~~~g~~~~v~VG~~~ 341 (981)
.+|.++.||++ +++...+.|+++. .+| .++.||.|.
T Consensus 334 ~~G~~i~f~~~~~~~~~~~~i~~~~--~~G--~~~~v~~~~ 370 (391)
T 3eaf_A 334 ITADTIDYEPGFHLAYRKVFIIKLG--ENG--ELQLMGKFE 370 (391)
T ss_dssp CBSSCBCCBTTBCCCCCCEEEEEEC--TTS--SEEEEEEEC
T ss_pred ccccceeeCCCCCCcceEEEEEEEe--cCC--EEEEeeeec
Confidence 88845999975 4555678888873 345 468889996
No 48
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=97.76 E-value=2.3e-05 Score=88.29 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcceeeccCCCCeEEec-CCCCCCceeEEEEEEEcC
Q psy1666 250 LQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD-KDGDGPARYNIIHFKQIR 328 (981)
Q Consensus 250 ~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V~F~g~~G~~V~FD-~nGD~~~~YdI~n~q~~~ 328 (981)
....|||++.+|.||++.- ..++..|.+.|++++|.|..| ++.|| ++|++...+.|++++..+
T Consensus 285 a~~~Yda~~~l~~Al~~ag---------------~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 285 TAGGFSAAMAVVTAVQKAK---------------STDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDP 348 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCEEEETTE-EEEECTTTCBEECCEEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCccCCCC-CEEECcccCccccceEEEEEEeCC
Confidence 4568999999999998751 246788999999999999998 69999 467777788999988655
Q ss_pred CCcE
Q psy1666 329 PGVY 332 (981)
Q Consensus 329 ~g~~ 332 (981)
++.+
T Consensus 349 ~~~~ 352 (374)
T 3n0x_A 349 AVAW 352 (374)
T ss_dssp TSSS
T ss_pred Cccc
Confidence 5443
No 49
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=97.72 E-value=0.00018 Score=79.94 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+++...+.++.... ++...+.+++ ..++.+|++.+.+..+..++.++.+.++... ++
T Consensus 149 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~-~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p--~i 220 (362)
T 3snr_A 149 DLWFNDLKKQGEAMGLKIVGEERFARPDT-----SVAGQALKLV-AANPDAILVGASGTAAALPQTTLRERGYNGL--IY 220 (362)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCS-----CCHHHHHHHH-HHCCSEEEEECCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred HHHHHHHHHHHHHcCCEEEEEeecCCCCC-----CHHHHHHHHH-hcCCCEEEEecCcchHHHHHHHHHHcCCCcc--EE
Confidence 44567788888999999988887775432 3344555553 3456778888778888999999888888763 58
Q ss_pred EeccCcccccccCCCccceeeEEEEEec-------CCCC---CChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQ-------ANPV---KGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSS 221 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~-------~~~i---pgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~ 221 (981)
+..+|........ ..+..+|.+..... .... |..++|.+. |+..+.-.
T Consensus 221 ~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~~~~----- 278 (362)
T 3snr_A 221 QTHGAASMDFIRI-AGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKV----------------YEEKYGPS----- 278 (362)
T ss_dssp ECGGGCSHHHHHH-HGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHH----------------HHHHHCTT-----
T ss_pred eccCcCcHHHHHH-hHHHhCCCEEecccccccccCCCcCcccHHHHHHHHH----------------HHHHhCCC-----
Confidence 7877765432211 12234565544321 0001 113344321 11111100
Q ss_pred CCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcce-eec
Q psy1666 222 RTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQ 300 (981)
Q Consensus 222 ~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V-~F~ 300 (981)
.........|||++.+|.||++......+ + ...++..|.+.|+++ +|.
T Consensus 279 -----------------------~p~~~~~~~yda~~~~~~al~~a~~~~~~---g-----~~~~~~~~~~al~~~~~~~ 327 (362)
T 3snr_A 279 -----------------------SRSQFAGHSYDAFKVLERVVPVALKKAKP---G-----TQEFREALREAFLTEKDIA 327 (362)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHCCT---T-----SHHHHHHHHHHHHHCCCEE
T ss_pred -----------------------CCCchhHhHHHHHHHHHHHHHHhhccccC---C-----CcchHHHHHHHHHhcCCcc
Confidence 00112456899999999999998642110 0 112356799999999 899
Q ss_pred cCCCCeEEecCC---CCCCceeEEEEEE
Q psy1666 301 GLSEDHFKFDKD---GDGPARYNIIHFK 325 (981)
Q Consensus 301 g~~G~~V~FD~n---GD~~~~YdI~n~q 325 (981)
|.+| ++.||++ |+....+.|++++
T Consensus 328 g~~G-~~~f~~~~~~g~~~~~~~i~~~~ 354 (362)
T 3snr_A 328 ASQG-VYNFTETDRYGLDDRSRILLTVK 354 (362)
T ss_dssp CSSC-EECCCSSCSSCCCGGGCEEEEEE
T ss_pred ccee-eEEeCCCCCCCCCCCCeEEEEEE
Confidence 9998 6999876 5555668888886
No 50
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=97.54 E-value=0.0002 Score=80.58 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHHhhccCCceEEE
Q psy1666 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLNATGSFSWV 151 (981)
Q Consensus 72 ~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~~~~l~g~~vWI 151 (981)
+...+.+++.+++.|+.+...+.++.... ++...+.++. ..++.+|++.+....+..++.++.+.++.. .++
T Consensus 173 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~~-----d~~~~~~~~~-~~~~dav~~~~~~~~a~~~~~~~~~~g~~~--~~~ 244 (386)
T 3sg0_A 173 EGYYKVLAAAAPKLGFELTTHEVYARSDA-----SVTGQVLKII-ATKPDAVFIASAGTPAVLPQKALRERGFKG--AIY 244 (386)
T ss_dssp HHHHHHHHHHHHHHTCEECCCEEECTTCS-----CCHHHHHHHH-HTCCSEEEEECCSGGGHHHHHHHHHTTCCS--EEE
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeeCCCCC-----cHHHHHHHHH-hcCCCEEEEecCcchHHHHHHHHHHcCCCC--cEE
Confidence 44567778888889999877777765332 3445565553 345677888887778888998888888875 478
Q ss_pred EeccCcccccccCCCccceeeEEEEEec---------CCC-CCChHHHHhhcCCCCCCCCCccccccccccCCCCCCCCC
Q psy1666 152 GSDGWSARGLVSDGSEAEVEGTLSLQPQ---------ANP-VKGFDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSS 221 (981)
Q Consensus 152 ~s~~W~~~~~~~~~~~~~~~G~l~~~~~---------~~~-ipgF~ef~~~l~p~~~~~n~~~~~~fw~~~f~C~~~~~~ 221 (981)
++++|........ ..+..+|.+..... ..+ .|..++|.+. |+..++-.
T Consensus 245 ~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------------~~~~~~~~----- 302 (386)
T 3sg0_A 245 QTHGVATEEFIKL-GGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDA----------------YKAANGGA----- 302 (386)
T ss_dssp CCGGGCSHHHHHH-HGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHH----------------HHHHTTTC-----
T ss_pred eccccCCHHHHHh-hhhhcCCeEEecccccccccCCCCCcchHHHHHHHHH----------------HHHHhCCC-----
Confidence 8877765433211 12234565544321 000 0112333321 22222100
Q ss_pred CCCCCCCCCCCCCCcccccCCccccccccHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCCCCccHHHHhhcce-eec
Q psy1666 222 RTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQ 300 (981)
Q Consensus 222 ~~~~~~~~~~~Ctg~e~l~~~~~~~~~~~~~VydAVyAiAhALh~m~~~lC~~~~~~C~~~~~~~~~qLl~~Lk~V-~F~ 300 (981)
.........|||++.+|.||++..+...+ + ...++..|.+.|+++ +|.
T Consensus 303 -----------------------~p~~~~~~~yda~~~~~~al~~a~~~~~~---g-----~~~~~~~~~~al~~~~~~~ 351 (386)
T 3sg0_A 303 -----------------------APTIFGVHLWDSMTLVENAIPAALKAAKP---G-----TPEFRAAIRDQIEKSKDLA 351 (386)
T ss_dssp -----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHCCT---T-----SHHHHHHHHHHHTTCCSEE
T ss_pred -----------------------CCChhHHHHHHHHHHHHHHHHHhhhccCC---C-----CcchHHHHHHHHHhccCcc
Confidence 00113456899999999999998642110 1 112356799999999 899
Q ss_pred cCCCCeEEecCC---CCCCceeEEEEEE
Q psy1666 301 GLSEDHFKFDKD---GDGPARYNIIHFK 325 (981)
Q Consensus 301 g~~G~~V~FD~n---GD~~~~YdI~n~q 325 (981)
|..| ++.||++ |+....+.|++++
T Consensus 352 g~~G-~~~f~~~~~~g~~~~~~~i~~~~ 378 (386)
T 3sg0_A 352 LNNG-LSNMTPDNHNGYDERSAFLIEIR 378 (386)
T ss_dssp ETTE-EECCCSSCSSCCCGGGCEEEEEE
T ss_pred ccce-eEEECCCcCCCCCCCceEEEEEE
Confidence 9988 6999865 5455568888886
No 51
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.10 E-value=0.00058 Score=77.33 Aligned_cols=89 Identities=19% Similarity=0.434 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCC-CChhhHhhhhccccccCCCCCeEEecc-CCCCcc-eeeEEEeEEc
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP-TKGPELLKYLRKVSFQGLSEDHFKFDK-DGDGPA-RYNIIHFKQI 750 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~-~~~~qL~~~L~~v~F~~~~g~~v~Fd~-~Gd~~~-~YdI~n~~~~ 750 (981)
...||||+++|+|+++.-. . ......|..... .++..|.++|++++|.|.+| .+.||+ +|++.. .|+|++++.
T Consensus 290 a~~YDav~~~a~Al~~a~~-~-~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG-~i~fd~~~G~~~~~~~~i~~~~~- 365 (395)
T 3h6g_A 290 ALMYDAVHVVSVAVQQFPQ-M-TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTG-RITFNKTNGLRTDFDLDVISLKE- 365 (395)
T ss_dssp HHHHHHHHHHHHHHHTCTT-C-CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTE-EEECCTTTSEECCCCEEEEEEET-
T ss_pred HHHHhHHHHHHHHHHhhhc-C-CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcce-eeEecCCCCeecCCeEEEEEecc-
Confidence 4799999999999987631 1 111234643322 34568999999999999998 799998 999876 899999872
Q ss_pred CCCcEEEEEEEEEEC-ceEEE
Q psy1666 751 RPGVYQWVQVGEYLE-GELRL 770 (981)
Q Consensus 751 ~~~~~~~~~VG~~~~-~~l~i 770 (981)
+ .+++||.|++ .+|.+
T Consensus 366 --~--~~~~vG~w~~~~g~~~ 382 (395)
T 3h6g_A 366 --E--GLEKIGTWDPASGLNM 382 (395)
T ss_dssp --T--EEEEEEEEETTTEECC
T ss_pred --C--CceEEEEEcCCCCccc
Confidence 2 4789999985 35544
No 52
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=96.10 E-value=0.012 Score=65.64 Aligned_cols=72 Identities=19% Similarity=0.183 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEcCCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPG 753 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~~ 753 (981)
...|||++.+|+||++.- . ...++..|.+.|++++|.|.+| .+.||++|++...+.|.+++ ++
T Consensus 291 ~~~yda~~~~~~al~~~g-----~--------~~~~~~~l~~~l~~~~~~g~~G-~i~f~~~g~~~~~~~i~~~~---~g 353 (375)
T 4evq_A 291 VQGWDAGQLLDAGVKAVG-----G--------DVAKRKELNAAMAAASFASPRG-PFKLSAAHNPVQNFYLRELK---GG 353 (375)
T ss_dssp HHHHHHHHHHHHHHHHTT-----T--------CTTCHHHHHHHHHTCEEEETTE-EEEBCTTSCBCCCEEEEEEE---TT
T ss_pred HHHHHHHHHHHHHHHHhC-----C--------CCCCHHHHHHHHhcCCcccCCc-ceeECCCCCccccEEEEEEE---CC
Confidence 478999999999997541 0 0145788999999999999998 59999999999999999986 33
Q ss_pred cEEEEEEEEEE
Q psy1666 754 VYQWVQVGEYL 764 (981)
Q Consensus 754 ~~~~~~VG~~~ 764 (981)
.++.||...
T Consensus 354 --~~~~v~~~~ 362 (375)
T 4evq_A 354 --KSVNLGLAA 362 (375)
T ss_dssp --EEEEEEEEE
T ss_pred --CcEEeeehh
Confidence 567777664
No 53
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=95.92 E-value=0.013 Score=65.06 Aligned_cols=76 Identities=13% Similarity=0.163 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEec-cCCCCcceeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD-KDGDGPARYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd-~~Gd~~~~YdI~n~~~~~~ 752 (981)
...||||+.+|+||++.- . ..++..|.+.|++++|.|.+| .+.|| ++|++...+.|.+++.. +
T Consensus 283 ~~~yda~~~~~~al~~~g-----~---------~~~~~~l~~al~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~-~ 346 (368)
T 4eyg_A 283 VGGYDGIHLVFEALKKTG-----G---------KADGDSLIAAMKGMKWESPRG-PISIDPETRDIVQNIYIRKVEKV-D 346 (368)
T ss_dssp HHHHHHHHHHHHHHHHTT-----T---------CCSHHHHHHHHTTCEEEETTE-EEEECTTTCCEEEEEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHHHHhC-----C---------CCCHHHHHHHHHcCCcccCCC-CeEECcccCCcccceEEEEEEec-C
Confidence 478999999999998651 0 234678999999999999998 79999 89999888999998754 7
Q ss_pred CcEEEEEEEEEEC
Q psy1666 753 GVYQWVQVGEYLE 765 (981)
Q Consensus 753 ~~~~~~~VG~~~~ 765 (981)
|....+.+|+|..
T Consensus 347 G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 347 GELYNIEFAKFDA 359 (368)
T ss_dssp TEEEEEEEEEEEE
T ss_pred CeEEEEEeecccc
Confidence 7888899999863
No 54
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=95.51 E-value=0.015 Score=64.58 Aligned_cols=72 Identities=19% Similarity=0.182 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhcccc-ccCCCCCeEEeccCCCCcceeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVS-FQGLSEDHFKFDKDGDGPARYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~-F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~~~ 752 (981)
...|||++.+|+||++.- ..++..+.+.|+++. |.|.+| .+.||++|++...+.|++++ +
T Consensus 291 ~~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~~g~~G-~i~f~~~g~~~~~~~i~~~~---~ 351 (366)
T 3td9_A 291 ALGYDAYMVLLDAIERAG---------------SFDREKIAEEIRKTRNFNGASG-IINIDENGDAIKSVVVNIVK---N 351 (366)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCSEEETTE-EECBCTTSCBCCCEEEEEEE---T
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCcccce-eeEECCCCCccCceEEEEEE---C
Confidence 468999999999997641 134678999999998 999998 69999999999889998886 3
Q ss_pred CcEEEEEEEEEECc
Q psy1666 753 GVYQWVQVGEYLEG 766 (981)
Q Consensus 753 ~~~~~~~VG~~~~~ 766 (981)
| .++.||.|+++
T Consensus 352 g--~~~~v~~~~~~ 363 (366)
T 3td9_A 352 G--SVDFEAVINPD 363 (366)
T ss_dssp T--EEEEEEEECGG
T ss_pred C--EEEEEEecChh
Confidence 4 57888988653
No 55
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=95.36 E-value=0.011 Score=65.11 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeEEEeE
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFK 748 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI~n~~ 748 (981)
...||||+++|+||++.- ..++..+.+.|++++|.|.+| ++.||++|++. ..|+|++|+
T Consensus 278 ~~~yda~~~~~~al~~~g---------------~~~~~~l~~~l~~~~~~g~~G-~i~f~~~g~~~~~~~~i~~~~ 337 (346)
T 1usg_A 278 WITYAAVQSLATALERTG---------------SDEPLALVKDLKANGANTVIG-PLNWDEKGDLKGFDFGVFQWH 337 (346)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHCEEETTE-EECBCTTSSBSSCCCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCcccee-eeEECCCCCccCCceEEEEEe
Confidence 478999999999998751 124778999999999999999 89999999987 579999986
No 56
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=94.93 E-value=0.041 Score=60.67 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcc-eeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPA-RYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~-~YdI~n~~~~~~ 752 (981)
...|||++.+|.||++.- ..++..+.+.|++.+|.|.+| .+.||++|++.. .|.|++|+..++
T Consensus 277 ~~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~g~~G-~~~f~~~g~~~~~~~~i~~~~~~~~ 340 (356)
T 3ipc_A 277 LYSYAAMQAIAGAAKAAG---------------SVEPEKVAEALKKGSFPTALG-EISFDEKGDPKLPGYVMYEWKKGPD 340 (356)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCCTTS-SBCBCTTSCBCCCCCEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCCcce-eeEECCCCCccCCCeEEEEEEECCC
Confidence 468999999999997641 134678999999999999999 699999999885 899999986444
Q ss_pred CcEEEEEEEEE
Q psy1666 753 GVYQWVQVGEY 763 (981)
Q Consensus 753 ~~~~~~~VG~~ 763 (981)
|. ++.+..|
T Consensus 341 G~--~~~~~~~ 349 (356)
T 3ipc_A 341 GK--FTYIQQG 349 (356)
T ss_dssp SS--EEEEEC-
T ss_pred Cc--EEEEecc
Confidence 54 5555555
No 57
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=94.11 E-value=0.28 Score=53.54 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=57.2
Q ss_pred eeEEeecc---hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHH
Q psy1666 64 VLMLFLRE---TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVR 140 (981)
Q Consensus 64 ~lv~f~~~---~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~ 140 (981)
+.++.-+. +...+.|++.+++.|.-|...+.++.... +....+ ++..++.+|++.+...++..+...+.
T Consensus 127 ~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~~~-------~~~~~~-~~~~~~dai~~~~~~~~~~~i~~q~~ 198 (327)
T 3ckm_A 127 PLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLPAD-------VTYFVQ-ENNSNTTALYAVASPTELAEMKGYLT 198 (327)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESSTTH-------HHHHHH-HSCTTCCEEEECCCHHHHHHHHHHHT
T ss_pred EEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCCch-------hhHHHH-HhccCCcEEEEEcCHHHHHHHHHHHH
Confidence 44444443 55678888888888988888877764321 122223 35667788888888888888887776
Q ss_pred hhccCCceEEEEeccCccc
Q psy1666 141 RLNATGSFSWVGSDGWSAR 159 (981)
Q Consensus 141 ~~~l~g~~vWI~s~~W~~~ 159 (981)
..+... .++++++|...
T Consensus 199 ~~g~~~--~~~~~~~~~~~ 215 (327)
T 3ckm_A 199 NIVPNL--AIYASSRASAS 215 (327)
T ss_dssp TTCTTC--EEEECGGGCCH
T ss_pred hhhccC--CEEeeeccccc
Confidence 666544 57777776643
No 58
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=93.56 E-value=0.081 Score=58.85 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEc
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQI 750 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~ 750 (981)
...|||++.+|+||++.- ..++..|.+.|++++|.+..|. +.||++|++...+.|++++..
T Consensus 281 ~~~Yda~~~~~~Al~~ag---------------~~~~~~l~~aL~~~~~~~~~G~-~~f~~~g~~~~~~~i~~v~~~ 341 (375)
T 3i09_A 281 AADYSSVTTYLKAVQAAG---------------STDSDKVMAQLKKMKIDDFYAK-GYIRTDGSMIHDMYLMEVKKP 341 (375)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTSCEESSSCE-EEECTTSBEECCEEEEEECCG
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhCCCccCCCCc-eEECCCCCeeeeeEEEEEecc
Confidence 478999999999998651 1246789999999999999996 999999999888888888643
No 59
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=92.79 E-value=0.12 Score=56.98 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhh-Hhhhhccc-cccCCCCCeEEeccCCCC-cceeeEEEeE
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPE-LLKYLRKV-SFQGLSEDHFKFDKDGDG-PARYNIIHFK 748 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~q-L~~~L~~v-~F~~~~g~~v~Fd~~Gd~-~~~YdI~n~~ 748 (981)
...|||++.+|.||++.- ..++.. +.+.|+++ .|.|.+| .+.||++|++ ...+.|++++
T Consensus 280 ~~~yda~~~~~~al~~ag---------------~~~~~~~~~~~l~~~~~~~g~~G-~~~f~~~g~~~~~~~~i~~~~ 341 (358)
T 3hut_A 280 AHGYDAVGIMLAAVGRAG---------------PEVTRESLRDALAATDRYAGVTG-ITRFDPETRETTKILTRLVVR 341 (358)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------TTCCHHHHHHHHHTCCSEEETTE-EEEECTTTCCEEECCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHhcCCCcCCce-eeEECCCCCcCCCceEEEEEE
Confidence 478999999999998641 123566 99999999 9999998 8999999998 6789999886
No 60
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=92.61 E-value=0.14 Score=57.02 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceeeEEEeEEc
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQI 750 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~~~ 750 (981)
...|||++.+|+||++.- ..++..+.+.|++++|.+..|..+.||++|++...+.|++++..
T Consensus 284 ~~~Yda~~~~~~Al~~ag---------------~~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~~~~i~~~~~~ 345 (379)
T 3n0w_A 284 AGGYSAALQYLKAVNAIG---------------SKDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLVRDMYLVRAKKP 345 (379)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCSSSCCSBEECTTSBEECCEEEEEECCG
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCccccCCCceeECCCCCcccceEEEEEEch
Confidence 478999999999998651 12467899999999999888877899999999888999998753
No 61
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=91.49 E-value=0.73 Score=50.33 Aligned_cols=84 Identities=11% Similarity=-0.009 Sum_probs=53.0
Q ss_pred eeEEeecc---hhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcchhhHHHHHHHHH
Q psy1666 64 VLMLFLRE---TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVR 140 (981)
Q Consensus 64 ~lv~f~~~---~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s~~~a~~~~~~~~ 140 (981)
+.|+..+. +...+.|+++.++.|.-|...+.++.. .++...++++ ..++.+|++.+....+..+...+.
T Consensus 125 vail~~~~~yG~~~~~~F~~~~~~~Gg~vv~~~~y~~~------~d~~~~l~~i--~~~pDaV~~~~~~~~~~~i~~~~~ 196 (325)
T 2h4a_A 125 PLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP------ADVTYFVQEN--NSNTTALYAVASPTELAEXKGYLT 196 (325)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST------THHHHHHHHS--TTCCCEEEECCCHHHHHHHHHHHT
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHcCCCcceeEecCCH------HHHHHHHHhc--CCCCCEEEEeCCHHHHhhhhhhHh
Confidence 33444443 556788888888888888888877643 1555666665 355667777777776654444443
Q ss_pred hhccCCceEEEEeccCc
Q psy1666 141 RLNATGSFSWVGSDGWS 157 (981)
Q Consensus 141 ~~~l~g~~vWI~s~~W~ 157 (981)
..+. +.-.++++.|.
T Consensus 197 ~~g~--~~pl~~~~~~~ 211 (325)
T 2h4a_A 197 NIVP--NLAIYASSRAS 211 (325)
T ss_dssp TTCT--TCEEEECGGGC
T ss_pred hcCC--CCCEEEecccc
Confidence 3322 23577787887
No 62
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=90.48 E-value=0.14 Score=57.99 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCcceee
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYN 743 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~~~Yd 743 (981)
...||||+++|+|+++... +. +. ....++..+.++|++++|.|.+| .+.||++|+....|+
T Consensus 306 ~~~Yda~~~~~~a~~~a~~--~~-----~~-g~~~~~~~l~~al~~~~~~g~~G-~i~f~~~g~~~~~~~ 366 (419)
T 3h5l_A 306 CQTYSALYAYSIAAALAGG--PG-----AP-YDDVQNKAVADRLRSLIFRGPVG-TMRFHADTQSAWSYP 366 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTS--CC-----CT-TCHHHHHHHHHHHHHCEEEETTE-EEEBCTTTCBBCEET
T ss_pred HHHHHHHHHHHHHHHHhcC--Cc-----cC-CCccCHHHHHHHHHhCCcccCce-EEEECCCCCcccccc
Confidence 4689999999999986521 00 00 01134567999999999999999 699999999665443
No 63
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=90.15 E-value=0.46 Score=52.87 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEecc-CCCCcceeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK-DGDGPARYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~-~Gd~~~~YdI~n~~~~~~ 752 (981)
...||||+.+|+||++. . ..++.++.+.|++++|.|.+| .+.||+ +++......|.+++.. +
T Consensus 287 ~~~Yda~~~~a~Al~~a-----g----------~~~~~~v~~al~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~-~ 349 (387)
T 3i45_A 287 LVGYNTLTAMAVAFEKA-----G----------GTESETLVETLKDMAFSTPMG-PLSFRASDHQSTMGAWVGRTALR-D 349 (387)
T ss_dssp HHHHHHHHHHHHHHHHH-----T----------SCCHHHHHHHTTTCEEEETTE-EEEBCTTTCBBCCCEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHHHHh-----C----------CCCHHHHHHHHhcCCCcCCCC-CeEEcCCCCccccceeEEEEEee-C
Confidence 46899999999999865 1 134778999999999999998 699996 6666666677776532 2
Q ss_pred CcEEEEEEEEEE
Q psy1666 753 GVYQWVQVGEYL 764 (981)
Q Consensus 753 ~~~~~~~VG~~~ 764 (981)
+ ..+++.|.
T Consensus 350 g---~~~i~~w~ 358 (387)
T 3i45_A 350 G---KGVMVDWR 358 (387)
T ss_dssp T---EEEEEEEE
T ss_pred C---ceeEEeeE
Confidence 3 25677774
No 64
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=88.46 E-value=0.23 Score=46.42 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=21.5
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCC-ceecCcc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQY-QIRLPSD 824 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g-~isn~~d 824 (981)
+.|-..|+||++.... |=.|.+|++| +|++..+
T Consensus 22 ~~~C~~CppG~~~~~~-----~t~C~pC~~g~ty~~~~n 55 (130)
T 1du3_A 22 SPSEGLCPPGHHISED-----GRDCISCKYGQDYSTHWN 55 (130)
T ss_dssp CCBTTBBCTTEEECSS-----SSCEEECCTTTEECCSSB
T ss_pred CCccCCCCCCceecCC-----CCcCccCCCcCEEeCCCC
Confidence 5666778888766532 3467777777 6766544
No 65
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=87.31 E-value=0.56 Score=51.40 Aligned_cols=57 Identities=18% Similarity=0.263 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccc-cccCCCCCeEEeccCCCCcceeeEEEeE
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQGLSEDHFKFDKDGDGPARYNIIHFK 748 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v-~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~ 748 (981)
...|||++.+|.|++.. .++..+.+.|+++ +|.|.+| .+.||++|++...+-|++++
T Consensus 284 ~~~Yda~~~la~Ai~~a-----------------~~~~~v~~aL~~~~~~~g~~G-~i~f~~~g~~~~~~~i~~v~ 341 (353)
T 4gnr_A 284 ALAYDSVHLVANAAKGA-----------------KNSGEIKDNLAXTKDFEGVTG-QTSFDADHNTVKTAYMMTMN 341 (353)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------SSHHHHHHHHHTCCCEEETTE-EECCCTTSCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcC-----------------CCHHHHHHHHHhcCCCccCce-eEEECCCcCCcCCeEEEEEE
Confidence 36899999999998411 1255688888887 5999998 79999999998877787775
No 66
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=87.10 E-value=0.79 Score=50.76 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEec-cCCCCcceeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFD-KDGDGPARYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd-~~Gd~~~~YdI~n~~~~~~ 752 (981)
...|||++.+|.||++. . ..++..+.+.|++++|.+.+| .+.|| ++|+....+.|++++...+
T Consensus 286 ~~~Yda~~~l~~Al~~a-----g----------~~~~~~v~~aL~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~~~~~~ 349 (374)
T 3n0x_A 286 AGGFSAAMAVVTAVQKA-----K----------STDTEKLIAAMEGMEFDTPKG-KMVFRKEDHQALQSMYHFKVKVDPA 349 (374)
T ss_dssp HHHHHHHHHHHHHHHHH-----T----------SCCHHHHHHHHTTCEEEETTE-EEEECTTTCBEECCEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHh-----C----------CCCHHHHHHHHhcCCccCCCC-CEEECcccCccccceEEEEEEeCCC
Confidence 36899999999999754 1 134678999999999999998 79999 4677777888888875433
Q ss_pred C
Q psy1666 753 G 753 (981)
Q Consensus 753 ~ 753 (981)
+
T Consensus 350 ~ 350 (374)
T 3n0x_A 350 V 350 (374)
T ss_dssp S
T ss_pred c
Confidence 3
No 67
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=86.48 E-value=0.24 Score=48.24 Aligned_cols=56 Identities=23% Similarity=0.544 Sum_probs=40.6
Q ss_pred ccCCccCCCCcEEeeecCc-ceeeccccCCCCcee---cCccccccccCCCCCCCCccccCcccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGE-SCCWHCFNCSQYQIR---LPSDETQCLTCPEGTKPDLLRQNCLEI 847 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~-~CC~~C~~C~~g~is---n~~d~~~C~~C~~~~~~n~~~~~C~~~ 847 (981)
.+| .|++|++....... .=|..|..||.|++. +.+....|. |++|++++. ..|.+=
T Consensus 84 t~C--~C~~G~y~~~~~~~~~~C~~C~~C~~G~v~~~ct~~~dtvC~-C~~G~ys~~--~~C~~c 143 (162)
T 1ext_A 84 TVC--GCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEKQNTVCT-CHAGFFLRE--NECVSC 143 (162)
T ss_dssp CEE--ECCTTEEEEEEETTEEEEEECCCCTTEEEEECCBTTBCCEEE-ECTTEEEET--TEEEEG
T ss_pred CCc--cCCCCceeccCCCCcccccCCCcCCCCEEeccccCCCCcccc-CCCCeecCC--CcCCCC
Confidence 478 89999887644322 468999999999854 223456798 999999886 567653
No 68
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=86.31 E-value=0.63 Score=51.76 Aligned_cols=58 Identities=5% Similarity=0.041 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccC-CCCcceeeEEEe
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKD-GDGPARYNIIHF 747 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~-Gd~~~~YdI~n~ 747 (981)
...|||++.+|+||++.- ..++..+.+.|++++|.+.+| .+.||++ ++....+.|.++
T Consensus 287 ~~~yda~~~~~~Al~~ag---------------~~~~~~l~~al~~~~~~g~~G-~i~f~~~~~~~~~~~~i~~~ 345 (385)
T 1pea_A 287 EAAYWQTLLLGRAAQAAG---------------NWRVEDVQRHLYDIDIDAPQG-PVRVERQNNHSRLSSRIAEI 345 (385)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCEEETTE-EEEECTTTSCEEBCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhhCcccCCCC-CeEEcCCCCccccceEEEEE
Confidence 478999999999998651 123678999999999999988 7999984 455567777776
No 69
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=85.80 E-value=0.38 Score=47.39 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=40.8
Q ss_pred ccCCccCCCCcEEeeecCcc--eeeccccCCCCceecCc----cccccccCCCCCCCCcc--ccCcccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGES--CCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLL--RQNCLEI 847 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~--CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~--~~~C~~~ 847 (981)
.+| .|.+|++........ =|-.|..|+.|++.... ....|.+||.+++++.. ...|.+-
T Consensus 84 ~~C--~C~~G~y~~~~~~~~c~~C~~~~~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~s~~~~C~p~ 150 (173)
T 3alq_R 84 RIC--TCRPGWYCALSKQEGCRLCAPLRKCRPGFGVARPGTETSDVVCKPCAPGTFSNTTSSTDICRPH 150 (173)
T ss_dssp CEE--EECTTEEEEEECSSSEEEEEECCCBCTTEEEEECCTTTSCCEEEECCTTEECCCCBSSCCCEEC
T ss_pred Cee--ECCCCeEeccCCCCCCCcccccCcCCCCeeEecCCcCCCCCcccCCCCCeecCCCCCCccCCCC
Confidence 578 499998876543222 35566899999875433 34579999999998874 4567553
No 70
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=85.36 E-value=0.36 Score=46.96 Aligned_cols=44 Identities=23% Similarity=0.533 Sum_probs=29.0
Q ss_pred ccCCccCCCCcEEeeec---CcceeeccccCCCCceecCcc-ccccccCC
Q psy1666 787 SVCSLPCDIGQAKKYVE---GESCCWHCFNCSQYQIRLPSD-ETQCLTCP 832 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~---g~~CC~~C~~C~~g~isn~~d-~~~C~~C~ 832 (981)
..|-..|+||++....= +.. -.|.+||+|+|++..+ ...|.+|.
T Consensus 17 ~~CC~~CppG~~~~~~Ct~~~~~--t~C~~C~~gty~~~~n~~~~C~~C~ 64 (162)
T 1ext_A 17 SICCTKCHKGTYLYNDCPGPGQD--TDCRECESGSFTASENHLRHCLSCS 64 (162)
T ss_dssp TCEEECBCTTEEEEECCSSTTSC--CEEEECCTTEECCSSBCCSSCEECC
T ss_pred CCCCCCCCCCcccccccCCCCCC--cccccCCCCccccccCCCCcccccC
Confidence 45777899998876430 111 2578999999988776 34466554
No 71
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=85.24 E-value=0.45 Score=45.41 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=25.3
Q ss_pred cCCccCCCCcEEeee--cCcceeeccccCCCCceecCccccccccCC
Q psy1666 788 VCSLPCDIGQAKKYV--EGESCCWHCFNCSQYQIRLPSDETQCLTCP 832 (981)
Q Consensus 788 ~Cs~~C~pG~~k~~~--~g~~CC~~C~~C~~g~isn~~d~~~C~~C~ 832 (981)
.|-..|+||++.... .+.. -.|.+||+|+|++..+...|.+|+
T Consensus 17 ~CC~~C~pG~~~~~~Ct~~~~--t~C~~C~~gty~~~~~~~~C~~C~ 61 (146)
T 2hey_R 17 RCCHECRPGNGMVSRCSRSQN--TVCRPCGPGFYNDVVSSKPCKPCT 61 (146)
T ss_dssp EEEECBCTTEEEEECCCSSCC--CEEEECCTTEECCSCBSSCCEECC
T ss_pred cCCCCCCCCCeecccCCCCCC--CCcccCCCCCEECCCCCCcCcccC
Confidence 455677777765421 0000 256777888777776666666643
No 72
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=82.85 E-value=0.54 Score=44.83 Aligned_cols=42 Identities=24% Similarity=0.481 Sum_probs=22.0
Q ss_pred cCCCCcEEeeecCcceeeccccCCCCceecC----ccccccccCCCCCCCCc
Q psy1666 792 PCDIGQAKKYVEGESCCWHCFNCSQYQIRLP----SDETQCLTCPEGTKPDL 839 (981)
Q Consensus 792 ~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~----~d~~~C~~C~~~~~~n~ 839 (981)
.|++|++.. .| .| |..||.|++... +....|.+||++++.+.
T Consensus 6 ~C~~g~Y~~--~g-~C---C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~ 51 (146)
T 2hey_R 6 HCVGDTYPS--ND-RC---CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDV 51 (146)
T ss_dssp CBCSSEEEE--TT-EE---EECBCTTEEEEECCCSSCCCEEEECCTTEECCS
T ss_pred CCCCCCEeC--CC-cC---CCCCCCCCeecccCCCCCCCCcccCCCCCEECC
Confidence 466665542 22 34 456666665431 23445666666654443
No 73
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=81.60 E-value=3.1 Score=45.83 Aligned_cols=75 Identities=5% Similarity=0.056 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccccccCCCCCeEEeccCCCCc-ceeeEEEeEEcCC
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRP 752 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~F~~~~g~~v~Fd~~Gd~~-~~YdI~n~~~~~~ 752 (981)
...|||++.++.|+.+. .+ ..++..+.+.|++++|.+..| .+.||++|+.. ..+-|.+++. .+
T Consensus 286 ~~~Yda~~~l~~Ai~~~-----ag---------~~d~~~v~~al~~~~~~~~~G-~i~fd~~~~~~~~~~~i~~v~~-~d 349 (371)
T 4f06_A 286 VAAYDGARLIYKMIEAT-----SG---------KSDPDKAIAAVKGMKWVSPRG-EVSIDPETRHITQNVYLREVEK-VD 349 (371)
T ss_dssp HHHHHHHHHHHHHHHHT-----TT---------SCCHHHHHHHHTTCEEEETTE-EEEECTTTCBEEEEEEEEEEEE-ET
T ss_pred HHHHHHHHHHHHHHHHh-----cC---------CCCHHHHHHHHhCCCeeCCcE-EEEEcCCCCcccCCEEEEEEEe-cC
Confidence 36899999999998632 11 235678999999999999998 79999776533 4555666654 35
Q ss_pred CcEEEEEEEEEE
Q psy1666 753 GVYQWVQVGEYL 764 (981)
Q Consensus 753 ~~~~~~~VG~~~ 764 (981)
|...++.++.+.
T Consensus 350 Gk~v~~~~~~~~ 361 (371)
T 4f06_A 350 GKLINRELETFK 361 (371)
T ss_dssp TEEEEEEEEEEE
T ss_pred CEEEEEEEEEEe
Confidence 656566666553
No 74
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=81.35 E-value=0.89 Score=50.58 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhcccc----cc-------CCCCCeEEeccCCCCc-ce
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVS----FQ-------GLSEDHFKFDKDGDGP-AR 741 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v~----F~-------~~~g~~v~Fd~~Gd~~-~~ 741 (981)
...|||++.++.||++.-... + ..++..+.+.|+++. |. |.+| .+.||++|+.. ..
T Consensus 288 ~~~yda~~~~~~al~~ag~~~-----~------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G-~i~f~~~~~~~~~~ 355 (392)
T 3lkb_A 288 TNGMLAAAIAVEAIRRAQERF-----K------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGV-EIDFTKSEHTGAEG 355 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----S------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSC-SBCCCSSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHhhccC-----C------CCCHHHHHHHHHhcCCCcCcccccccccccce-eeEeCCCCcCCccc
Confidence 368999999999998763210 0 235678999999997 88 7788 79999988754 56
Q ss_pred eeEEEeEEcCCCcEEEEEEEEEE
Q psy1666 742 YNIIHFKQIRPGVYQWVQVGEYL 764 (981)
Q Consensus 742 YdI~n~~~~~~~~~~~~~VG~~~ 764 (981)
+.+.+++ +| .++.||.|.
T Consensus 356 ~~i~~~~---~g--~~~~v~~w~ 373 (392)
T 3lkb_A 356 LRILEAK---GG--RFVPVTEPF 373 (392)
T ss_dssp BEEEEEE---TT--EEEECSCCB
T ss_pred EEEEEEe---CC--EEEEecccc
Confidence 7888875 33 577788885
No 75
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=81.03 E-value=0.64 Score=47.38 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=25.0
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCccc-cccccC
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDE-TQCLTC 831 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~-~~C~~C 831 (981)
+.|-..|+||++....=+..===.|.+|++|+|++..+. ..|..|
T Consensus 43 ~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~~~~C~~C 88 (216)
T 3me4_A 43 GRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNEEDKCLLH 88 (216)
T ss_dssp TEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBCCSSCEEC
T ss_pred CCCcCCCCCCceecccCCCCCCCccccCCCCCeecCCCCCCcCCCC
Confidence 567777888877543200000014678888888776553 445443
No 76
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=80.41 E-value=0.53 Score=46.03 Aligned_cols=59 Identities=25% Similarity=0.453 Sum_probs=15.9
Q ss_pred CccCCccCCCCcEEeeecCc--ceeeccccCCCCceecCc----cccccccCCCCCCCCcc-ccCccc
Q psy1666 786 ESVCSLPCDIGQAKKYVEGE--SCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLL-RQNCLE 846 (981)
Q Consensus 786 ~S~Cs~~C~pG~~k~~~~g~--~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~-~~~C~~ 846 (981)
..+| .|++|++....... .=|-.+..|+.|++.... ....|.+||.+.+++.. ...|.+
T Consensus 78 ~t~C--~C~~G~y~~~~~~~~C~~C~~~t~C~~G~~~~~~gt~~~dt~C~~C~~Gtfs~~~~~~~C~p 143 (167)
T 1jma_B 78 NAVC--GCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQH 143 (167)
T ss_dssp CCEE--EECTTEEEEECC--CCSEEEECCC--------------------------------------
T ss_pred CCcc--cCCCCceecCCCCCcCccccCcccCCCCCEEeccCCcCCCCccccCCCCceeCCCCCCcCCC
Confidence 3578 99999987543222 235555689999876443 24569999999998865 345655
No 77
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=79.72 E-value=0.84 Score=42.77 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=26.9
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCcc-ccccccCC
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSD-ETQCLTCP 832 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d-~~~C~~C~ 832 (981)
..|-..|+||++....=+..-=-.|.||++|+|++..+ ...|.+|.
T Consensus 15 ~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n~~~~C~~C~ 61 (134)
T 4fhq_A 15 SECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQ 61 (134)
T ss_dssp TEEEECBCTTEEEEECCC--CCCEEEECCTTEECCSCBCCSSCEECC
T ss_pred CcCCCCCCCCCEecccCCCCCCCcccCCCCCCEecCCCCCCcCcCCC
Confidence 46777888887765321100002578888888887654 35555554
No 78
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=79.37 E-value=0.87 Score=44.62 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=31.9
Q ss_pred CccCCccCCCCcEEeee--cCcceeeccccCCCCceecCcc-ccccccCC
Q psy1666 786 ESVCSLPCDIGQAKKYV--EGESCCWHCFNCSQYQIRLPSD-ETQCLTCP 832 (981)
Q Consensus 786 ~S~Cs~~C~pG~~k~~~--~g~~CC~~C~~C~~g~isn~~d-~~~C~~C~ 832 (981)
..+|-..|+||++.... ++.. =.|.+|++|+|++..+ ...|.+|.
T Consensus 16 ~~~cC~~CppG~~~~~~Ct~~~~--t~C~~C~~gty~~~~n~~~~C~~C~ 63 (171)
T 3urf_Z 16 HQLLCDKCPPGTYLKQHCTAKWK--TVCAPCPDHYYTDSWHTSDECLYCS 63 (171)
T ss_dssp SCCEEECBCTTEEEEECCCSSSC--CEEEECCTTEECCSCBCCSSCEECC
T ss_pred CCCCCCCCCCCceecccCCCCCC--CccccCCCCcEecCCCCCCccccCc
Confidence 56888999999987642 0110 1578999999998875 56777665
No 79
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=78.69 E-value=1 Score=42.63 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=29.4
Q ss_pred ccCCccCCCCcEEeeecCc-c--eeeccccCCCCceecC---ccccccccCCCCCCCCcccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGE-S--CCWHCFNCSQYQIRLP---SDETQCLTCPEGTKPDLLRQ 842 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~-~--CC~~C~~C~~g~isn~---~d~~~C~~C~~~~~~n~~~~ 842 (981)
.+| .|.+|++....... . =|-.+..||.|+.... +....|.+||++.++|..+.
T Consensus 79 tvC--~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~v~~~t~~~dt~C~~C~~GtfS~~~~~ 138 (142)
T 2uwi_A 79 RIC--HCDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGTYSKTGHH 138 (142)
T ss_dssp CEE--EECTTEEEEEECTTSCEEEEEECCCCCTTEEEEEECTTSCEEEEECC----------
T ss_pred CEe--eCCCCcEecccCCCCCCCCCcCCCcCCcCEeeCCCCCCCCCcccCCCCCcccCCccc
Confidence 688 49999987643322 2 3444589999987422 23456999999999998753
No 80
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=78.29 E-value=0.94 Score=42.94 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=28.2
Q ss_pred cCCccCCCCcEEeeecCcceeeccccCCCCceecCcccc-ccccCCC
Q psy1666 788 VCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDET-QCLTCPE 833 (981)
Q Consensus 788 ~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~~-~C~~C~~ 833 (981)
.|-..|+||++....=+..==-.|.|||+|+|++..+.. .|.+|..
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~~~~C~~C~~ 61 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNRSPWCHSCRG 61 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBCCSSCEECCC
T ss_pred CCCCCCCCCCeeCccCCCCCCCccCcCCCCCCcccCCCCCccCCCcC
Confidence 566779999876542110000257888889888776543 5777654
No 81
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=77.21 E-value=2.1 Score=46.61 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccc-cccCCCCCeEEeccC---CCCcceeeEEEeE
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQGLSEDHFKFDKD---GDGPARYNIIHFK 748 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v-~F~~~~g~~v~Fd~~---Gd~~~~YdI~n~~ 748 (981)
...|||++.+|.||++......+ + ....+..+.+.|+++ .|.|.+| .+.||++ |+....+.|++++
T Consensus 285 ~~~yda~~~~~~al~~a~~~~~~---g-----~~~~~~~~~~al~~~~~~~g~~G-~~~f~~~~~~g~~~~~~~i~~~~ 354 (362)
T 3snr_A 285 GHSYDAFKVLERVVPVALKKAKP---G-----TQEFREALREAFLTEKDIAASQG-VYNFTETDRYGLDDRSRILLTVK 354 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCT---T-----SHHHHHHHHHHHHHCCCEECSSC-EECCCSSCSSCCCGGGCEEEEEE
T ss_pred HhHHHHHHHHHHHHHHhhccccC---C-----CcchHHHHHHHHHhcCCccccee-eEEeCCCCCCCCCCCCeEEEEEE
Confidence 47899999999999887431100 0 011245789999999 8999998 7999876 5555667888875
No 82
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=76.33 E-value=1.4 Score=42.42 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=27.2
Q ss_pred CccCCccCCCCcEEeeecCcce-eeccccCCCC-ceecCccc-cccccC
Q psy1666 786 ESVCSLPCDIGQAKKYVEGESC-CWHCFNCSQY-QIRLPSDE-TQCLTC 831 (981)
Q Consensus 786 ~S~Cs~~C~pG~~k~~~~g~~C-C~~C~~C~~g-~isn~~d~-~~C~~C 831 (981)
...|-..|+||++....=+... ==.|.||++| +|++..+. ..|..|
T Consensus 40 ~~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n~~~~C~~C 88 (156)
T 3tje_F 40 GQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRC 88 (156)
T ss_dssp CTTCSSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCBSCSCCEEC
T ss_pred cCeECCCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCCCCCcCcCC
Confidence 3578888999987653200011 1257888888 78877653 344444
No 83
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=75.48 E-value=1.3 Score=42.98 Aligned_cols=56 Identities=32% Similarity=0.588 Sum_probs=32.4
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecC----ccccccccCCCCCCCCcc--ccCccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLP----SDETQCLTCPEGTKPDLL--RQNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~----~d~~~C~~C~~~~~~n~~--~~~C~~ 846 (981)
.+|. |++|++.. +...=|-.|..||.|++... +....|.+||++++++.. ...|.+
T Consensus 77 ~~C~--C~~G~y~~--~~~~~C~~C~~C~~G~~v~~~ct~~~dt~C~~C~~Gtfs~~~~~~~~C~~ 138 (161)
T 1sg1_X 77 AVCR--CAYGYYQD--EETGHCEACSVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEANHVDPCLP 138 (161)
T ss_dssp CEEE--ECTTEEEC--TTTCCEEECCCBCTTEEEEECCBTTBCCEEEECCTTEECCSCBSSCCCEE
T ss_pred ceec--cCCCeEeC--CCCccccCCccCCCCCeecccCCCCCCCcccCCCCCceeCCCCCCCcCCc
Confidence 4673 77787663 12234556677777775421 123468788887777654 244543
No 84
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=74.99 E-value=1.5 Score=43.14 Aligned_cols=54 Identities=24% Similarity=0.525 Sum_probs=37.1
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCc----cccccccCCCCCCCCccc--cCccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLLR--QNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~~--~~C~~ 846 (981)
.+| .|.+|++.. . .-|-.|..|+.|+..... ....|.+||++++++... ..|.+
T Consensus 84 tvC--~C~~G~~~~---~-~~C~~~s~C~pG~~v~~~~t~~~Dt~C~~C~~GtFs~~~s~~~~C~p 143 (176)
T 3k51_B 84 RAC--RCRTGFFAH---A-GFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQP 143 (176)
T ss_dssp CEE--EECTTEEEE---T-TEEEECCCCCTTEEEEECCCSSSCCEEEECCTTEECCSCSSSCCCEE
T ss_pred cee--eccCCeeEC---C-CcccccccCCCCcEEeecCcccCCCccccCCCCcccCCCCCCCcccC
Confidence 467 688998764 2 245678889988865332 234699999998888863 56755
No 85
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=74.25 E-value=1.3 Score=47.38 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=27.0
Q ss_pred CCccCCccCCCCcEEeeecCcceeeccccCCCCceecCcc-ccccccCC
Q psy1666 785 PESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSD-ETQCLTCP 832 (981)
Q Consensus 785 P~S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d-~~~C~~C~ 832 (981)
-...|-..|+||++....=+..===.|.+|++|+|++..+ ...|..|.
T Consensus 21 ~~~~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~~~~C~~C~ 69 (313)
T 3u3p_A 21 GQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCS 69 (313)
T ss_dssp CCEEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBCCSSCEECC
T ss_pred CCCCCCCCCCCCceecCcCCCCCCCccccCCCCceeccCCCCCcCcccc
Confidence 3456777888887755320000002577888888777653 45565543
No 86
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=74.12 E-value=1.3 Score=43.29 Aligned_cols=54 Identities=22% Similarity=0.503 Sum_probs=36.8
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCc----cccccccCCCCCCCCcc--ccCccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLL--RQNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~--~~~C~~ 846 (981)
.+|. |.+|++... .-|-.|..|+.|+..... ....|.+||++++++.. ...|.+
T Consensus 82 tvC~--C~~G~~~~~----~~C~~ct~C~~G~~v~~~~t~~~dt~C~~C~~Gtfs~~~ss~~~C~p 141 (171)
T 3urf_Z 82 RVCE--CKEGRYLEI----EFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSKAPCRK 141 (171)
T ss_dssp CEEE--ECTTEEEET----TEEEECCCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBSSCCCEE
T ss_pred cccc--CCCCcEECC----ccCcccCcCCCCceEeecCccCCCcccccCCCCcccCCCCCCCcccc
Confidence 4674 889987641 356778888888754432 24469999999888876 356654
No 87
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=73.14 E-value=1.8 Score=44.11 Aligned_cols=56 Identities=21% Similarity=0.445 Sum_probs=35.2
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCc----cccccccCCCCCCCCc--cccCccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDL--LRQNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~--~~~~C~~ 846 (981)
.+|. |.+|++.. ++-.-|-.|..|+.|+..... ....|.+||++++++. ....|.+
T Consensus 109 tvC~--C~~G~y~~--~~c~~C~~cs~C~pG~~v~~~ct~~~Dt~C~~C~~GtFs~~~s~~~~C~p 170 (216)
T 3me4_A 109 RRCA--CTAGYHWN--SDCECCRRNTECAPGFGAQHPLQLNKDTVCTPCLLGFFSDVFSSTDKCKP 170 (216)
T ss_dssp CEEE--ECTTEEEE--TTTTEEEECCCBCTTEEECSSEETTSCCCEEECCTTEECCSCBSSCCCEE
T ss_pred cccc--CCCCeEcc--CCCcchhccccCCCCccccccCccCCCCccccCCCceecCCCCCCCcccc
Confidence 4563 88887653 222456677788888754432 2346888888888876 3456654
No 88
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=72.56 E-value=1.5 Score=43.16 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCccCCccCCCCcEEeeecCcceeeccccCCCCceecCccc-cccccCC
Q psy1666 785 PESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDE-TQCLTCP 832 (981)
Q Consensus 785 P~S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~-~~C~~C~ 832 (981)
-..+|-..|+||++....=+..===.|.+|++|+|++..+. ..|..|.
T Consensus 17 ~~~~cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~~~~C~~C~ 65 (176)
T 3k51_B 17 GERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCN 65 (176)
T ss_dssp -CEEEEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCBCCSSCEECC
T ss_pred CCCCCCCCCCCCceeCccCCCCCCCccccCCCCCeecCCCCCCcCcccc
Confidence 45678899999988754211000025789999999877653 5677765
No 89
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=72.33 E-value=2 Score=50.17 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=26.8
Q ss_pred CCCccCCccCCCCcEEeeecCcceeeccccCCCCceecCccccccccCCCCCCC
Q psy1666 784 PPESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDETQCLTCPEGTKP 837 (981)
Q Consensus 784 ~P~S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~~~C~~C~~~~~~ 837 (981)
+|...| .|.+||... .+ .|..||.|.+........|.+||+...+
T Consensus 260 ~p~G~C--~C~~G~e~~--~~-----~C~aC~~g~~k~~~~~~~C~~CP~~S~s 304 (536)
T 3fl7_A 260 VPIGQC--LCQAGYEKV--ED-----ACQACSPGFFKFEASESPCLECPEHTLP 304 (536)
T ss_dssp CCBCCC--EECTTEEEE--TT-----EEEECCTTEECCSCCSSCCEECCSSEEC
T ss_pred cccCcE--eccCccccC--Cc-----eeeecCCCCCcccCCCCccccCCCCCCC
Confidence 344555 377777521 11 4667777777655566677777765443
No 90
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=72.13 E-value=2.1 Score=41.34 Aligned_cols=45 Identities=18% Similarity=0.412 Sum_probs=25.8
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCC-ceecCcc-ccccccCC
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQY-QIRLPSD-ETQCLTCP 832 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g-~isn~~d-~~~C~~C~ 832 (981)
.+|-..|+||++....=+.. =-.|.+|++| +|++..+ ...|.+|+
T Consensus 13 ~~~C~~CppG~~~~~~C~~~-~t~C~~C~~g~ty~~~~~~~~~C~~C~ 59 (161)
T 1sg1_X 13 GECCKACNLGEGVAQPCGAN-QTVCEPCLDNVTFSDVVSATEPCKPCT 59 (161)
T ss_dssp SCBCCCBCTTEEEEECSSSS-SCEEEECCTTTEECCSCBSSCCCEECC
T ss_pred CcCCCCCCcCCeECCcCCCC-CCcCcCCcCCCccccCCCCCCcCcCCC
Confidence 35667788887765420000 0257788887 7877665 33455443
No 91
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=71.84 E-value=2 Score=40.13 Aligned_cols=50 Identities=30% Similarity=0.557 Sum_probs=33.8
Q ss_pred ccCCCCcEEeeecCcceeeccccCCCCceecCc----cccccccCCCCCCCCcc--ccCccc
Q psy1666 791 LPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLL--RQNCLE 846 (981)
Q Consensus 791 ~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~--~~~C~~ 846 (981)
.+|++|++.. +..|| ..||.|++.... ....|.+||++++.+.. ...|.+
T Consensus 4 ~~C~~~eY~~---~~~CC---~~CppG~~~~~~C~~~~~t~C~pC~~gtys~~~n~~~~C~~ 59 (134)
T 4fhq_A 4 PSCKEDEYPV---GSECC---PKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQ 59 (134)
T ss_dssp CCCCTTEEEE---TTEEE---ECBCTTEEEEECCC--CCCEEEECCTTEECCSCBCCSSCEE
T ss_pred CCCCcccEEC---cCcCC---CCCCCCCEecccCCCCCCCcccCCCCCCEecCCCCCCcCcC
Confidence 3588897764 34685 577889885432 24589999999887753 355543
No 92
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=71.84 E-value=1.8 Score=46.24 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=36.2
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCc----cccccccCCCCCCCCcc--ccCccc
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS----DETQCLTCPEGTKPDLL--RQNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~----d~~~C~~C~~~~~~n~~--~~~C~~ 846 (981)
.+| .|.+|+... . .-|-.|..|+.|+..... ....|..|+.+++++.. ...|.+
T Consensus 88 tvC--~C~~G~y~~--~--~~C~~Ct~CppG~gV~~~cT~tsDTvC~~Cp~GTFSd~~Ss~~~C~p 147 (313)
T 3u3p_A 88 REC--TCPPGMFQS--N--ATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKA 147 (313)
T ss_dssp CEE--ECCTTEEEE--T--TEEEECCCBCTTEEEEECCCSSSCCEEEECCTTEECCSCBSSCCCEE
T ss_pred ccc--cCCCCceec--c--ccccccccCCCCCeeeecCCCCCCCccccCCCCeecCCCCCCccccc
Confidence 467 788888743 1 256788899988854332 24469999998888864 344543
No 93
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=71.80 E-value=1.7 Score=42.69 Aligned_cols=41 Identities=24% Similarity=0.515 Sum_probs=21.0
Q ss_pred CCccCCCCcEEeee---cCcceeeccccCCCCceecCccc-cccccCC
Q psy1666 789 CSLPCDIGQAKKYV---EGESCCWHCFNCSQYQIRLPSDE-TQCLTCP 832 (981)
Q Consensus 789 Cs~~C~pG~~k~~~---~g~~CC~~C~~C~~g~isn~~d~-~~C~~C~ 832 (981)
|-..|+||++.... .+. -.|.+|++|+|++..+. ..|..|.
T Consensus 21 cC~~C~pG~~~~~~C~~~~~---t~C~~C~~gty~~~~n~~~~C~~C~ 65 (173)
T 3alq_R 21 CCSKCSPGQHAKVFCTKTSD---TVCDSCEDSTYTQLWNWVPECLSCG 65 (173)
T ss_dssp EEECBCTTEEEEECCCSSCC---CEEEECCTTEECCSSBCCSSCEECC
T ss_pred CCCCCCCCCeecccCCCCCC---CcCCcCCCCccccCCCCCCccCCCC
Confidence 44567777655431 011 14566666666665543 3455443
No 94
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=67.95 E-value=2.2 Score=41.00 Aligned_cols=49 Identities=24% Similarity=0.478 Sum_probs=27.1
Q ss_pred cCCCCcEEeeecCcceeeccccCCCCceecCc-----cccccccCCCC-CCCCcc--ccCccc
Q psy1666 792 PCDIGQAKKYVEGESCCWHCFNCSQYQIRLPS-----DETQCLTCPEG-TKPDLL--RQNCLE 846 (981)
Q Consensus 792 ~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~-----d~~~C~~C~~~-~~~n~~--~~~C~~ 846 (981)
.|++|+++. +..|| ..||.|++.... +...|.+||++ ++.+.. ...|.+
T Consensus 31 ~C~~~~Y~~---~~~CC---~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n~~~~C~~ 87 (156)
T 3tje_F 31 QNLEGLHHD---GQFCH---KPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRR 87 (156)
T ss_dssp --------C---CTTCS---SCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCBSCSCCEE
T ss_pred CCCCCcEEC---cCeEC---CCCCCCCeECCcCCCCCCCCcceeCCCCCeeeccCCCCCcCcC
Confidence 588897653 34684 788999986533 25789999999 555543 245643
No 95
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=66.92 E-value=1.9 Score=40.11 Aligned_cols=58 Identities=24% Similarity=0.520 Sum_probs=36.3
Q ss_pred ccCCccCCCC-cEEeeecCcceeeccccCCCCceec----CccccccccCCCCCCCCcc-ccCccc
Q psy1666 787 SVCSLPCDIG-QAKKYVEGESCCWHCFNCSQYQIRL----PSDETQCLTCPEGTKPDLL-RQNCLE 846 (981)
Q Consensus 787 S~Cs~~C~pG-~~k~~~~g~~CC~~C~~C~~g~isn----~~d~~~C~~C~~~~~~n~~-~~~C~~ 846 (981)
.+|. +|++| ++.....+..=|..|..|++|+... .+....|. |+++++.+.+ ...|.+
T Consensus 39 t~C~-pC~~g~ty~~~~n~~~~C~~C~~C~~g~~~~~~Ct~t~dtvC~-C~~G~y~~~~~~~~C~~ 102 (130)
T 1du3_A 39 RDCI-SCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQ-CEEGTFREEDSPEMCRK 102 (130)
T ss_dssp SCEE-ECCTTTEECCSSBCCSSCEECCCCCTTEEEEECCCSSSCCEEE-ECTTCEEETTEEEEEEC
T ss_pred CcCc-cCCCcCEEeCCCCCCCcCcCCCCCCcceeeeccCCCCCCCEec-CCCCeEECCCCCCcCcC
Confidence 4663 78888 6655433445588888888887632 22344588 8888877654 334544
No 96
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=66.78 E-value=4.6 Score=44.27 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCChhhHhhhhccc-cccCCCCCeEEeccC---CCCcceeeEEEeE
Q psy1666 674 QFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKV-SFQGLSEDHFKFDKD---GDGPARYNIIHFK 748 (981)
Q Consensus 674 ~~vydAVyaiAhALh~~l~~~c~~~~~~c~~~~~~~~~qL~~~L~~v-~F~~~~g~~v~Fd~~---Gd~~~~YdI~n~~ 748 (981)
...|||++.+|.||++..... . .+ ....+..+.+.|+++ .|.|.+| .+.||++ |+....+.|++++
T Consensus 309 ~~~yda~~~~~~al~~a~~~~-~--~g-----~~~~~~~~~~al~~~~~~~g~~G-~~~f~~~~~~g~~~~~~~i~~~~ 378 (386)
T 3sg0_A 309 VHLWDSMTLVENAIPAALKAA-K--PG-----TPEFRAAIRDQIEKSKDLALNNG-LSNMTPDNHNGYDERSAFLIEIR 378 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-C--TT-----SHHHHHHHHHHHTTCCSEEETTE-EECCCSSCSSCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcc-C--CC-----CcchHHHHHHHHHhccCccccce-eEEECCCcCCCCCCCceEEEEEE
Confidence 468999999999999875311 0 00 011245789999999 8999988 7999865 5555567888875
No 97
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=66.32 E-value=2.1 Score=42.17 Aligned_cols=58 Identities=22% Similarity=0.425 Sum_probs=22.5
Q ss_pred CccCCccCCCCcEEeeecCcceeeccccCCCCceecC----ccccccccCCCCCCCCcc--ccCccc
Q psy1666 786 ESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLP----SDETQCLTCPEGTKPDLL--RQNCLE 846 (981)
Q Consensus 786 ~S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~----~d~~~C~~C~~~~~~n~~--~~~C~~ 846 (981)
-.+|. |.+|++... .+-.-|-.|..|+.|+.... +....|.+|+++++++.. ...|.+
T Consensus 80 d~~C~--C~~G~~~~~-~~c~~C~~~~~C~pG~~v~~~~t~~~dt~C~~C~~Gtfs~~~s~~~~C~p 143 (177)
T 3qd6_R 80 DTICT--CEEGWHCTS-EACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHP 143 (177)
T ss_dssp CCEEE--ECTTEEESS-SSCCCEEECCCC------CCCCCSSCCCCCCC------------------
T ss_pred Cceee--cCCCcEECC-CCCccccccCcCCCCcEEEeCCccCCCCccccCCCCcccCCCCCCCcCcC
Confidence 35776 999988642 22245667788998875432 233579999999998875 356655
No 98
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=64.15 E-value=4.2 Score=39.95 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=27.4
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCccc-cccccCC
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDE-TQCLTCP 832 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~-~~C~~C~ 832 (981)
..|-..|+||++....=+..==-.|.+|++|+|++..+. ..|..|.
T Consensus 15 ~~CC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~~~~C~~C~ 61 (177)
T 3qd6_R 15 SQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHK 61 (177)
T ss_dssp SSEECCBCTTBCCCBCCCSSCCCBCCBCCSSEECCSSBCCSSCEECC
T ss_pred CeECCCCCCCCEeccCCCCCCCCccccCCCCceecCCCCCCcCCCCC
Confidence 467788899987543100000016788999988876653 4565543
No 99
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=61.25 E-value=28 Score=37.49 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhhe-----eee-----e--cCceeeechh
Q psy1666 859 AIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTF-----VLV-----L--KPSDLVCAIQ 926 (981)
Q Consensus 859 ~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~-----~fi-----g--~p~~~~C~lr 926 (981)
++++.+++++|++.=++++.++.+++.. |.-.+++++++.++=+... +.+ + ...+..|.+.
T Consensus 36 ~~~~~~i~~~gi~gN~lvi~vi~~~~~l-------~~~~~~~l~~LaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 108 (364)
T 2ks9_A 36 AAAYTVIVVTSVVGNVVVMWIILAHKRM-------RTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFH 108 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTC-------CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhH
Confidence 5666777888888888888777776542 2334566666554322211 111 1 1245679887
Q ss_pred hhhhHHHHHHHHHHH
Q psy1666 927 RFGAGFCFTVVYAAL 941 (981)
Q Consensus 927 ~~~f~i~ft~~~s~i 941 (981)
..+..+.....+-.+
T Consensus 109 ~~~~~~~~~~s~~~l 123 (364)
T 2ks9_A 109 NFFPIAAVFASIYSM 123 (364)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766555554443333
No 100
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=60.74 E-value=3 Score=40.60 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=19.1
Q ss_pred cCCccCCCCcEEeee--cCcceeeccccCCCCceecCcc-ccccccC
Q psy1666 788 VCSLPCDIGQAKKYV--EGESCCWHCFNCSQYQIRLPSD-ETQCLTC 831 (981)
Q Consensus 788 ~Cs~~C~pG~~k~~~--~g~~CC~~C~~C~~g~isn~~d-~~~C~~C 831 (981)
.|-..|+||++.... .+.. -.|.+||+|+|++..+ ...|..|
T Consensus 14 ~~C~~CppG~~~~~~C~~~~~--t~C~~Cp~GtY~~~~n~~~~C~~C 58 (167)
T 1jma_B 14 ECCPKCSPGYRVKEACGELTG--TVCEPCPPGTYIAHLNGLSKCLQC 58 (167)
T ss_dssp BCCBCBCTTEEEEECCCSSSC--CEEEECCTTEECSSCBCSSCCEEC
T ss_pred cCCCCCCCCCEeccCCCCCCC--CcCCcCCCCccccccCcCccccCC
Confidence 344556666554321 0000 1456666666655433 2344443
No 101
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=58.38 E-value=5.3 Score=46.11 Aligned_cols=10 Identities=20% Similarity=0.351 Sum_probs=4.7
Q ss_pred cCCccCCCCc
Q psy1666 788 VCSLPCDIGQ 797 (981)
Q Consensus 788 ~Cs~~C~pG~ 797 (981)
.|...|++|+
T Consensus 235 ~Cv~~Cp~g~ 244 (501)
T 1mox_A 235 TCKDTCPPLM 244 (501)
T ss_dssp EEESSCCCSE
T ss_pred cccccCCCCe
Confidence 3444455544
No 102
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=47.55 E-value=67 Score=35.68 Aligned_cols=73 Identities=8% Similarity=0.045 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheeee-----------e--cCceeee
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLV-----------L--KPSDLVC 923 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~fi-----------g--~p~~~~C 923 (981)
.+++++.+++++|++.=++++.++.+++.. |.-.++++++|+++=+...++. + .-....|
T Consensus 36 ~~~i~~~ii~i~gi~gN~lvi~vi~~~~~~-------~~~~~~ll~~LaiaDll~~~~~~~p~~~~~~~~~~~~~~~~~C 108 (448)
T 2z73_A 36 SLGIFIGICGIIGCGGNGIVIYLFTKTKSL-------QTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAAC 108 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT-------CSTTHHHHHHHHHHHHHHHHHHSTTHHHHHHHTTSCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHhhhhhhhcccc-------CCccchHHHHHHHHHHHHHHHHhccHHHHHHhcCCccCCHHHH
Confidence 345666677777777777777777766532 2233555555554433222111 1 1134668
Q ss_pred chhhhhhHHHHHH
Q psy1666 924 AIQRFGAGFCFTV 936 (981)
Q Consensus 924 ~lr~~~f~i~ft~ 936 (981)
.+...+..+....
T Consensus 109 ~~~~~~~~~~~~~ 121 (448)
T 2z73_A 109 KVYGFIGGIFGFM 121 (448)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766555544444
No 103
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=42.68 E-value=59 Score=36.32 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheeee----------ecCceeeechh
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLV----------LKPSDLVCAIQ 926 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~fi----------g~p~~~~C~lr 926 (981)
.+.+++.+++++|++.=++++.++.+++.. +...+++|++|+++=+...++. .......|.+.
T Consensus 23 ~~~~~~~~i~~~gi~gN~lvi~~~~~~~~~-------~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~C~~~ 95 (488)
T 3eml_A 23 VYITVELAIAVLAILGNVLVCWAVWLNSNL-------QNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHGCLFI 95 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-------CSSHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheeecccc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 455666778888888888888777766532 2345666666665433321111 12244678877
Q ss_pred hhhhHHHHHHH
Q psy1666 927 RFGAGFCFTVV 937 (981)
Q Consensus 927 ~~~f~i~ft~~ 937 (981)
.++..+.....
T Consensus 96 ~~~~~~~~~~s 106 (488)
T 3eml_A 96 ACFVLVLTQSS 106 (488)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655444433
No 104
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.61 E-value=1.8e+02 Score=24.57 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=49.3
Q ss_pred eeeEEeecchhHHHHHHHHHHhCCeeEEEEEEeecCCcchhhhhHHHHHHHHhcCCCcEEEEEEcc-hhhHHHHHHHHHh
Q psy1666 63 PVLMLFLRETTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGS-DQEVAGVMRAVRR 141 (981)
Q Consensus 63 ~~lv~f~~~~~~~~~l~~~~~~~gICIA~~~~ip~~~~~~~~~~~~~ii~~li~~s~a~VIVl~~s-~~~a~~~~~~~~~ 141 (981)
+++|.|...+...+.|.+..+++|.-+--. + ...+..+-++.+.++-+|.++|+... ..|+...+..+..
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtv----r-----spqelkdsieelvkkynativvvvvddkewaekairfvks 73 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTV----R-----SPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKS 73 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEE----C-----SHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEe----c-----CHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHh
Confidence 477888888999999999999999743221 1 12356666777778878887666554 5677766655554
Q ss_pred hc
Q psy1666 142 LN 143 (981)
Q Consensus 142 ~~ 143 (981)
.+
T Consensus 74 lg 75 (134)
T 2l69_A 74 LG 75 (134)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 105
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=36.89 E-value=61 Score=35.31 Aligned_cols=69 Identities=6% Similarity=-0.083 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHhhcCeEEEEeeeeccCCcccccchHHHHHHH--HhcCCCCCCCCCcceeeEEeecchhHHHHHHHHH
Q psy1666 5 CYYIAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTK--LMTKPRARDDPDFIPVLMLFLRETTAFEELEVLL 82 (981)
Q Consensus 5 ~~~~g~~~~~~~~~~~~~Cia~~~~i~~~~~~~~~~~~~~i~~~--l~~~psa~~q~~a~~~lv~f~~~~~~~~~l~~~~ 82 (981)
++....+.|++.+++.|+++...+.++.. ..++...+.+ |+.. +.. +|++......+...+++ +
T Consensus 154 ~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~d~~~~~~~~~l~~~-~~d-------av~~~~~~~~~~~~~~~-~ 219 (391)
T 3eaf_A 154 YSRSPIGAIKKAAPSLGLQVVGDYDLPLR-----ATEADAERIAREMLAA-DPD-------YVWCGNTISSCSLLGRA-M 219 (391)
T ss_dssp HHHTTHHHHHHHTGGGTEEEEEEEECCTT-----CCHHHHHHHHHHHHTT-CCS-------EEEECSCHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHHHHHcCCceeeeeccCCC-----CcCHHHHHHHHHHHHc-CCC-------EEEEecCcHHHHHHHHH-H
Confidence 45667889999999999999988887754 2268888888 8653 555 66665555666655554 4
Q ss_pred HhCCe
Q psy1666 83 AKSSI 87 (981)
Q Consensus 83 ~~~gI 87 (981)
++.|+
T Consensus 220 ~~~g~ 224 (391)
T 3eaf_A 220 AKVGL 224 (391)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 56665
No 106
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=32.67 E-value=58 Score=35.01 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHhhcCeEEEEeeeeccCCcccccchHHHHHHHHhcCCCCCCCCCcceeeEEeecchhHHHHHHHHHHh
Q psy1666 5 CYYIAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARDDPDFIPVLMLFLRETTAFEELEVLLAK 84 (981)
Q Consensus 5 ~~~~g~~~~~~~~~~~~~Cia~~~~i~~~~~~~~~~~~~~i~~~l~~~psa~~q~~a~~~lv~f~~~~~~~~~l~~~~~~ 84 (981)
++....+.|++.+++.|+++...+.++... .++...+++|+.. +.. ++++......+...+++ +++
T Consensus 153 ~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-----~d~~~~~~~l~~~-~~d-------~v~~~~~~~~a~~~~~~-~~~ 218 (364)
T 3lop_A 153 LGKEAITGVERTLKAHALAITAMASYPRNT-----ANVGPAVDKLLAA-DVQ-------AIFLGATAEPAAQFVRQ-YRA 218 (364)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEECTTS-----CCCHHHHHHHHHS-CCS-------EEEEESCHHHHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEEEecCCC-----ccHHHHHHHHHhC-CCC-------EEEEecCcHHHHHHHHH-HHH
Confidence 445677889999999999998777776442 2577888888763 455 66666666666666654 456
Q ss_pred CCe
Q psy1666 85 SSI 87 (981)
Q Consensus 85 ~gI 87 (981)
.|+
T Consensus 219 ~g~ 221 (364)
T 3lop_A 219 RGG 221 (364)
T ss_dssp TTC
T ss_pred cCC
Confidence 676
No 107
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=32.41 E-value=8.5 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.973 Sum_probs=10.8
Q ss_pred eecCcceeecccc
Q psy1666 801 YVEGESCCWHCFN 813 (981)
Q Consensus 801 ~~~g~~CC~~C~~ 813 (981)
+++|..||-.|+|
T Consensus 14 pregdwcchkcvp 26 (36)
T 4b2u_A 14 PREGDWCCHKCVP 26 (36)
T ss_dssp GGGCCSSSSEEEE
T ss_pred CCccCeeeecccc
Confidence 4678889999986
No 108
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=32.11 E-value=35 Score=37.97 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheee---------eec--Cceeeech
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVL---------VLK--PSDLVCAI 925 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~f---------ig~--p~~~~C~l 925 (981)
.+.+++.+++++|++.=++++.++.+++.. +...++++++|+++=+...+. .+. -....|.+
T Consensus 19 ~~~~~~~~~~~~gi~gN~lvi~~~~~~~~~-------~~~~~~~l~~La~~Dll~~~~~p~~~~~~~~~~~~~~~~~C~~ 91 (464)
T 4dkl_A 19 TIMALYSIVCVVGLFGNFLVMYVIVRYTKM-------KTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGNILCKI 91 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT-------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHeehhhhhcccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhh
Confidence 455666777788888777787777765532 233456666655443332211 111 14677988
Q ss_pred hhhhhHHHHHHHHHHH
Q psy1666 926 QRFGAGFCFTVVYAAL 941 (981)
Q Consensus 926 r~~~f~i~ft~~~s~i 941 (981)
...+..+.....+-.+
T Consensus 92 ~~~~~~~~~~~s~~~l 107 (464)
T 4dkl_A 92 VISIDYYNMFTSIFTL 107 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8766655554443333
No 109
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=31.80 E-value=86 Score=34.66 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheeee---------e--cCceeeech
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLV---------L--KPSDLVCAI 925 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~fi---------g--~p~~~~C~l 925 (981)
.+.+++.+++++|++.=++++.++.+++.. |.-.+++|++|.++=+...+.+ + ......|.+
T Consensus 127 ~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l-------~~~~~~ll~~LAvsDll~~~~~p~~~~~~~~~~~~~~~~~C~~ 199 (434)
T 4ea3_A 127 TIVGLYLAVCVGGLLGNCLVMYVILRHTKM-------KTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKT 199 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSC-------CCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHeeeeeeecCcc-------CchhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCcCcccHHHH
Confidence 344556667777777777777777665432 3445677777776554431110 1 224567888
Q ss_pred hhhhhHHHHHHHHH
Q psy1666 926 QRFGAGFCFTVVYA 939 (981)
Q Consensus 926 r~~~f~i~ft~~~s 939 (981)
...+..+.....+-
T Consensus 200 ~~~~~~~~~~~S~~ 213 (434)
T 4ea3_A 200 VIAIDYYNMFTSTF 213 (434)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555544333
No 110
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=30.45 E-value=16 Score=42.51 Aligned_cols=44 Identities=27% Similarity=0.569 Sum_probs=32.3
Q ss_pred ccCCccCCCCcEEeeecCcceeeccccCCCCceecCccccccccCCCCCC
Q psy1666 787 SVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDETQCLTCPEGTK 836 (981)
Q Consensus 787 S~Cs~~C~pG~~k~~~~g~~CC~~C~~C~~g~isn~~d~~~C~~C~~~~~ 836 (981)
..|.. |++|++|..... -.|.+||.+..++...+..|. |-+++.
T Consensus 276 ~~C~a-C~~g~~k~~~~~----~~C~~CP~~S~s~~~Gs~~C~-C~ng~~ 319 (536)
T 3fl7_A 276 DACQA-CSPGFFKFEASE----SPCLECPEHTLPSPEGATSCE-CEEGFF 319 (536)
T ss_dssp TEEEE-CCTTEECCSCCS----SCCEECCSSEECCCTTCSSCE-ECTTCB
T ss_pred ceeee-cCCCCCcccCCC----CccccCCCCCCCCCCCccEEE-Eecccc
Confidence 35754 999999864322 257999999998888888885 766654
No 111
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=30.04 E-value=99 Score=34.20 Aligned_cols=78 Identities=15% Similarity=0.091 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheeee----------e--cCceeeec
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLV----------L--KPSDLVCA 924 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~fi----------g--~p~~~~C~ 924 (981)
.+.+++.+++++|++.=++++.++.+++.. +...+++|++|+++=+...++. + ......|.
T Consensus 25 ~~~~~~~~~~~~g~~gN~lvi~~~~~~~~~-------~~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 97 (467)
T 3uon_A 25 FIVLVAGSLSLVTIIGNILVMVSIKVNRHL-------QTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCD 97 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-------CSHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeeecCcc-------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcchHh
Confidence 455666677778887777777777666532 2344566666655443332111 1 12456788
Q ss_pred hhhhhhHHHHHHHHHHH
Q psy1666 925 IQRFGAGFCFTVVYAAL 941 (981)
Q Consensus 925 lr~~~f~i~ft~~~s~i 941 (981)
+..++..+.....+-.+
T Consensus 98 ~~~~~~~~~~~~s~~~l 114 (467)
T 3uon_A 98 LWLALDYVVSNASVMNL 114 (467)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 87766555544433333
No 112
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=28.73 E-value=89 Score=35.42 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHH
Q psy1666 856 STWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLC 907 (981)
Q Consensus 856 ~~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~ 907 (981)
-.+++++.+++++|++.=++++.++.+++.. +...+++|++|+++
T Consensus 41 ~~~~~~~~~i~~~gi~gN~lvi~~i~~~~~l-------~~~~~~~l~nLAia 85 (500)
T 2rh1_A 41 VGMGIVMSLIVLAIVFGNVLVITAIAKFERL-------QTVTNYFITSLACA 85 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-------CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-------CcccHHHHHHHHHH
Confidence 3456667777788887777787777766532 23346666666544
No 113
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=26.16 E-value=19 Score=42.51 Aligned_cols=18 Identities=17% Similarity=0.613 Sum_probs=8.6
Q ss_pred CCCCceec--CccccccccC
Q psy1666 814 CSQYQIRL--PSDETQCLTC 831 (981)
Q Consensus 814 C~~g~isn--~~d~~~C~~C 831 (981)
||.|.+.+ ..+...|.+|
T Consensus 294 CP~g~~~~~~~~~~~~C~~C 313 (608)
T 1n8y_C 294 CPPNNQEVTAEDGTQRCEKC 313 (608)
T ss_dssp CCTTEEEEECTTSCEEEEEC
T ss_pred CCCCCcccccCCCCCccccC
Confidence 55565543 2223456655
No 114
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=25.98 E-value=1.4e+02 Score=34.04 Aligned_cols=72 Identities=10% Similarity=0.036 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheeee-----------ecCceeeech
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLV-----------LKPSDLVCAI 925 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~fi-----------g~p~~~~C~l 925 (981)
.+.+++.++.++|++.=++++.++.+++.- |...++++++|+++=+...++. .......|.+
T Consensus 65 ~~~~~~~~i~~~g~~gN~lvi~vi~~~~~l-------r~~~~~~l~nLA~aDll~~~~~~p~~~~~~~~~~~~~~~~c~~ 137 (520)
T 3v2y_A 65 LTSVVFILICCFIILENIFVLLTIWKTKKF-------HRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLTPAQWFL 137 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTT-------CSHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------cChHHHHHHHHHHHHHHHHHHHHHHHHHccccceeeCccccch
Confidence 345566677777777777777777776642 2345666666665443332211 1123456777
Q ss_pred hhhhhHHHHH
Q psy1666 926 QRFGAGFCFT 935 (981)
Q Consensus 926 r~~~f~i~ft 935 (981)
...+..+...
T Consensus 138 ~~~~~~~~~~ 147 (520)
T 3v2y_A 138 REGSMFVALS 147 (520)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655444433
No 115
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=24.75 E-value=37 Score=28.43 Aligned_cols=52 Identities=21% Similarity=0.504 Sum_probs=32.0
Q ss_pred CCCCcEEeeecCccee--eccc--c--CCCCceecCccccccccCCCCCCCCccccCcc
Q psy1666 793 CDIGQAKKYVEGESCC--WHCF--N--CSQYQIRLPSDETQCLTCPEGTKPDLLRQNCL 845 (981)
Q Consensus 793 C~pG~~k~~~~g~~CC--~~C~--~--C~~g~isn~~d~~~C~~C~~~~~~n~~~~~C~ 845 (981)
|++||......|..|= -.|. + |..+.=.|......| .||+++..+.+...|+
T Consensus 29 C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C-~C~~G~~~~~~~~~Ci 86 (86)
T 1lmj_A 29 CDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRC-ECPPGHQLSPNISACI 86 (86)
T ss_dssp CCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEE-ESCTTSCCCSSSCCCC
T ss_pred CCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEE-ECcCCcccCCCCCccC
Confidence 8888764322232331 1132 2 555556677778889 5999988887777775
No 116
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=24.42 E-value=1.3e+02 Score=33.16 Aligned_cols=75 Identities=7% Similarity=0.028 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhhe-----eee-----e--cCceeeec
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTF-----VLV-----L--KPSDLVCA 924 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~-----~fi-----g--~p~~~~C~ 924 (981)
.+.+++.+++++|++.=++++.++.+++.. +...+++|++|+++=+... +.+ + ......|.
T Consensus 10 ~~~~~~~~~~~~gi~gN~~vi~~~~~~~~~-------~~~~~~~l~~La~~Dll~~~~~~p~~~~~~~~~~~~~~~~~C~ 82 (452)
T 3rze_A 10 PLVVVLSTICLVTVGLNLLVLYAVRSERKL-------HTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCL 82 (452)
T ss_dssp GGGTHHHHHHHHHHHHHHHHHHHHHHCSTT-------CCGGGHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCchhHh
Confidence 456677778888888888888777766542 2234555555544332221 111 1 12456788
Q ss_pred hhhhhhHHHHHHHH
Q psy1666 925 IQRFGAGFCFTVVY 938 (981)
Q Consensus 925 lr~~~f~i~ft~~~ 938 (981)
+..++..+.....+
T Consensus 83 ~~~~~~~~~~~~s~ 96 (452)
T 3rze_A 83 FWLSMDYVASTASI 96 (452)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 87766555544433
No 117
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=23.95 E-value=24 Score=40.46 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=9.4
Q ss_pred ccCCccCCCCcEE
Q psy1666 787 SVCSLPCDIGQAK 799 (981)
Q Consensus 787 S~Cs~~C~pG~~k 799 (981)
..|.+.|++|++.
T Consensus 235 g~Cv~~CP~g~y~ 247 (486)
T 2hr7_A 235 GRCVETCPPPYYH 247 (486)
T ss_dssp TEEESSCCTTCEE
T ss_pred CccccccCCCeEe
Confidence 3677788888765
No 118
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=23.26 E-value=1.7e+02 Score=32.35 Aligned_cols=75 Identities=7% Similarity=0.024 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhheeecCcceeeeCCccchHHHHHHHHHHHhhheee---------ee---cCceeeec
Q psy1666 857 TWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVL---------VL---KPSDLVCA 924 (981)
Q Consensus 857 ~~~i~~~~~s~~~~~~t~~v~~ifi~~r~tpiVka~n~~Ls~~lL~~l~l~fl~~~~f---------ig---~p~~~~C~ 924 (981)
.+.+++.+++++|++.=++++.++.+++.. +.-.+++|++|+++=+...+. .+ .-....|.
T Consensus 22 ~~~~~~~~i~~~~i~gN~lvi~~~~~~~~l-------~~~~~~~l~~La~aDll~~~~~~~~~~~~~~~~~~~~~~~~C~ 94 (484)
T 3vw7_A 22 FVPSVYTGVFVVSLPLNIMAIVVFILKMKV-------KKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCR 94 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-------CCHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTSCCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHHh
Confidence 455666777777877777777777766542 234466666666543332211 11 11456788
Q ss_pred hhhhhhHHHHHHHH
Q psy1666 925 IQRFGAGFCFTVVY 938 (981)
Q Consensus 925 lr~~~f~i~ft~~~ 938 (981)
+..++..+.....+
T Consensus 95 ~~~~~~~~~~~~S~ 108 (484)
T 3vw7_A 95 FVTAAFYCNMYASI 108 (484)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 87766555444433
No 119
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.52 E-value=81 Score=23.09 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeecC
Q psy1666 860 IGAMALSSTGILMTLLIVGVFIRHNN 885 (981)
Q Consensus 860 i~~~~~s~~~~~~t~~v~~ifi~~r~ 885 (981)
|+..+..++.+++..+++++|+|.|.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhh
Confidence 33344445555566666677777664
No 120
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=20.98 E-value=59 Score=34.59 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=22.0
Q ss_pred ccccCCCCCeEEeccCCCCcceeeEEEeE
Q psy1666 720 VSFQGLSEDHFKFDKDGDGPARYNIIHFK 748 (981)
Q Consensus 720 v~F~~~~g~~v~Fd~~Gd~~~~YdI~n~~ 748 (981)
..|.|.+| .++||+||+......+.+++
T Consensus 285 ~~f~G~tG-~i~fd~~G~~~r~l~~~~~~ 312 (327)
T 3ckm_A 285 YRLSGLTG-ILSADTNCNVERDMTWYQYQ 312 (327)
T ss_dssp CCEEETTE-EEEECTTCBEEEECEEEEEE
T ss_pred CCceeceE-EEEECCCCCCccccEEEEEE
Confidence 35889998 79999999977666666654
Done!