RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1666
(981 letters)
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 224 bits (572), Expect = 1e-63
Identities = 95/337 (28%), Positives = 134/337 (39%), Gaps = 68/337 (20%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SDGW A+ + GSE G ++L+ ++PV+ FD YF +L NN RNPWF
Sbjct: 276 SDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWF-------- 327
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
+FWE F+C N
Sbjct: 328 -----------------------------------------RDFWEQKFQCSLQNKRNH- 345
Query: 648 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 707
C H + E ++ FV +AV A + AL M LC LCDAM+
Sbjct: 346 -----RQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMKI 400
Query: 708 TKGPELLK-YLRKVSFQGL------SEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQV 760
G +L K YL K+ F ++ KFD GDG RYN+ + Q G Y +++V
Sbjct: 401 LDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMGRYNVFNL-QQTGGKYSYLKV 459
Query: 761 GEYLEGELRLNMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIR 820
G + L L++ +I + + P S CS PC + K G+ CCW C C Y+
Sbjct: 460 GHW-AETLSLDVDSIHWSRNSV--PTSQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL 516
Query: 821 LPSDETQCLTCPEGTKPDLLRQNCLEIPAMFIEITST 857
DE C+ C G P C +P +I+
Sbjct: 517 --VDEFTCMDCGPGQWPTADLSGCYNLPEDYIKWEDA 551
Score = 207 bits (528), Expect = 1e-57
Identities = 94/283 (33%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVA 133
E E +ICIA EK+ + + ++YD ++ +L+ KP AR V++F +
Sbjct: 202 GIEAFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDSR 258
Query: 134 GVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
++ A R+NA+ F+WV SDGW A+ + GSE G ++L+ ++PV+ FD YF +L
Sbjct: 259 ELIAAANRVNAS--FTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSL 316
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
NN RNPWF D E F+C N C H + E ++ FV
Sbjct: 317 NPYNNHRNPWFRD-FWEQKFQCSLQNKRNH------RQVCDKHLAIDSSNYEQESKIMFV 369
Query: 254 SDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQGL------SEDH 306
+AV A + AL M LC LCDAM+ G +L K YL K+ F ++
Sbjct: 370 VNAVYAMAHALHKMQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTAPFNPNKGADSI 429
Query: 307 FKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
KFD GDG RYN+ + Q G Y +++VG + L L++
Sbjct: 430 VKFDTFGDGMGRYNVFNL-QQTGGKYSYLKVGHW-AETLSLDV 470
Score = 38.6 bits (90), Expect = 0.010
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 9 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRAR------DDPDFI 62
E E +ICIA EK+ + + ++YD ++ +L+ KP AR D
Sbjct: 202 GIEAFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDSR 258
Query: 63 PVLMLFLRETTAF 75
++ R +F
Sbjct: 259 ELIAAANRVNASF 271
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 219 bits (560), Expect = 2e-62
Identities = 100/278 (35%), Positives = 160/278 (57%), Gaps = 8/278 (2%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM-TKPRARGVIVFGSDQEV 132
+ + L A+ + IA +K+ ++G E+++D ++ KL P+AR V+ F V
Sbjct: 213 GMDAFKELAAQEGLSIAHSDKIYSNAG---EKSFDRLLRKLRERLPKARVVVCFCEGMTV 269
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
G++ A+RRL G FS +GSDGW+ R V +G E E G ++++ Q+ V+ FDDYFL
Sbjct: 270 RGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLK 329
Query: 193 LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 252
L ++ N RNPWF + + F+C+ P N ++ CT +E L + + + ++ F
Sbjct: 330 LRLDTNTRNPWFPEF-WQHRFQCRLPGHLLE--NPNFKRICTGNESLEENYV-QDSKMGF 385
Query: 253 VSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKD 312
V +A+ A + L +MH LC G VGLCDAM+P G +LL +L K SF G+S + FD+
Sbjct: 386 VINAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEK 445
Query: 313 GDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMF 350
GD P RY+I++ + Y +V VG + EG L ++ +
Sbjct: 446 GDAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNIDDY 483
Score = 159 bits (403), Expect = 1e-41
Identities = 80/251 (31%), Positives = 119/251 (47%), Gaps = 52/251 (20%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SDGW+ R V +G E E G ++++ Q+ V+ FDDYFL L ++ N RNPWF
Sbjct: 290 SDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWF-------- 341
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
EFW+ F+C+ P
Sbjct: 342 -----------------------------------------PEFWQHRFQCRLPGHLLE- 359
Query: 648 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 707
N ++ CT +E L + + + ++ FV +A+ A + L +MH LC G VGLCDAM+P
Sbjct: 360 -NPNFKRICTGNESLEENYV-QDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKP 417
Query: 708 TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGE 767
G +LL +L K SF G+S + FD+ GD P RY+I++ + Y +V VG + EG
Sbjct: 418 IDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGV 477
Query: 768 LRLNMSAIQFK 778
L ++ IQ
Sbjct: 478 LNIDDYKIQMN 488
Score = 32.9 bits (75), Expect = 0.57
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 9 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM-TKPRAR------DDPDF 61
+ + L A+ + IA +K+ ++G E+++D ++ KL P+AR +
Sbjct: 213 GMDAFKELAAQEGLSIAHSDKIYSNAG---EKSFDRLLRKLRERLPKARVVVCFCEGMTV 269
Query: 62 IPVLMLFLR 70
+L R
Sbjct: 270 RGLLSAMRR 278
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 213 bits (544), Expect = 2e-60
Identities = 90/278 (32%), Positives = 152/278 (54%), Gaps = 7/278 (2%)
Query: 74 AFEELEVLLAKSS-ICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEV 132
E + ++ + IA ++ ++ +D I+ +L+ P +R V++F +D+++
Sbjct: 202 GVESFTQISKEAGGLSIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSRAVVIFANDEDI 260
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
++ A +R + G F WVGSD W ++ E EG +++QP+ V+GFD YF +
Sbjct: 261 KQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTS 320
Query: 193 LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDT-LAFEKQLQ 251
T+ENNRRN WF + E++F CK S + +CT E++ +D+ E ++Q
Sbjct: 321 RTLENNRRNVWFAE-YWEENFNCKLTISGSKKED--TDRKCTGQERIGKDSNYEQEGKVQ 377
Query: 252 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311
FV DAV A + AL HM+ DLC G+C M G +LLKY+R V+F G + F+K
Sbjct: 378 FVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNK 437
Query: 312 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
+GD P RY+I ++ + +G++ + EL+LN+
Sbjct: 438 NGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD-ELQLNI 474
Score = 157 bits (398), Expect = 5e-41
Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 53/251 (21%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SD W ++ E EG +++QP+ V+GFD YF + T+ENNRRN WF
Sbjct: 281 SDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWF-------- 332
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
E+WE++F CK S
Sbjct: 333 -----------------------------------------AEYWEENFNCKLTISGSKK 351
Query: 648 YNSHYSTECTTHEKLSRDT-LAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMR 706
+ +CT E++ +D+ E ++QFV DAV A + AL HM+ DLC G+C M
Sbjct: 352 ED--TDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEME 409
Query: 707 PTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEG 766
G +LLKY+R V+F G + F+K+GD P RY+I ++ + +G++ +
Sbjct: 410 QAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTD- 468
Query: 767 ELRLNMSAIQF 777
EL+LN+ +Q+
Sbjct: 469 ELQLNIEDMQW 479
Score = 31.4 bits (71), Expect = 1.5
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 9 AFEELEVLLAKSS-ICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRAR------DDPDF 61
E + ++ + IA ++ ++ +D I+ +L+ P +R +D D
Sbjct: 202 GVESFTQISKEAGGLSIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSRAVVIFANDEDI 260
Query: 62 IPVLMLFLR 70
+L R
Sbjct: 261 KQILAAAKR 269
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 210 bits (536), Expect = 2e-59
Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 21/282 (7%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVA 133
E E +I IA EK+ + + ++YD ++ +L+ KP AR V++F +
Sbjct: 201 GIEAFEQEARLRNISIATAEKVGRSNI---RKSYDSVIRELLQKPNARVVVLFMRSDDSR 257
Query: 134 GVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
++ A R NA+ F+WV SDGW A+ + GSE G ++L+ + PV+ FD YF +L
Sbjct: 258 ELIAAASRANAS--FTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSL 315
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
NN RNPWF D E F+C N C H + E ++ FV
Sbjct: 316 NPYNNHRNPWFRD-FWEQKFQCSLQNKRNHRRV------CDKHLAIDSSNYEQESKIMFV 368
Query: 254 SDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLK-YLRKVSFQGL------SEDH 306
+AV A + AL M LC LCDAM+ G +L K YL K++F ++
Sbjct: 369 VNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTAPFNPNKDADSI 428
Query: 307 FKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348
KFD GDG RYN+ +F Q G Y +++VG + L L+
Sbjct: 429 VKFDTFGDGMGRYNVFNF-QNVGGKYSYLKVGHW-AETLSLD 468
Score = 154 bits (391), Expect = 4e-40
Identities = 73/258 (28%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SDGW A+ + GSE G ++L+ + PV+ FD YF +L NN RNPWF
Sbjct: 275 SDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWF-------- 326
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
+FWE F+C N
Sbjct: 327 -----------------------------------------RDFWEQKFQCSLQNKRNHR 345
Query: 648 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 707
C H + E ++ FV +AV A + AL M LC LCDAM+
Sbjct: 346 RV------CDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKI 399
Query: 708 TKGPELLK-YLRKVSFQGL------SEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQV 760
G +L K YL K++F ++ KFD GDG RYN+ +F Q G Y +++V
Sbjct: 400 LDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMGRYNVFNF-QNVGGKYSYLKV 458
Query: 761 GEYLEGELRLNMSAIQFK 778
G + L L++++I +
Sbjct: 459 GHW-AETLSLDVNSIHWS 475
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 124 bits (313), Expect = 2e-30
Identities = 41/289 (14%), Positives = 74/289 (25%), Gaps = 57/289 (19%)
Query: 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQE 131
+ +L +L I I+ E D V KL R ++
Sbjct: 168 SEVRNDLTGVLYGEDIEISDTESFSND--------PCTSVKKLKGN-DVRIILGQFDQNM 218
Query: 132 VAGVMRAVRRLNATG------SFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKG 185
A V N G W W ++ S + L+ G
Sbjct: 219 AAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAA---MEGYIG 275
Query: 186 FDDYFLNLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLA 245
D L+ + +Y N S +
Sbjct: 276 VDFEPLSSKQIKTISGKT------PQQYEREYNNKRSGVGPSKFH--------------- 314
Query: 246 FEKQLQFVSDAVMAFSIALDHMHADLCQG----KVGLCDAMRPTKGPELLKYLRKVSFQG 301
+ D + + L L ++ + T G +L + + +F G
Sbjct: 315 -----GYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
Query: 302 LSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEY--LEGELRLN 348
++ F +G+ Q + + V+VGEY + L +
Sbjct: 370 VT-GQVVFR-NGERMGTIKFT---QFQDS--REVKVGEYNAVADTLEII 411
Score = 113 bits (285), Expect = 7e-27
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 38/192 (19%)
Query: 609 SIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLA 668
I + L T + + +Y N S +
Sbjct: 273 YIGVDFEPLSSKQIKTI---SGKTPQQYEREYNNKRSGVGPSKFH--------------- 314
Query: 669 FEKQLQFVSDAVMAFSIALDHMHADLCQG----KVGLCDAMRPTKGPELLKYLRKVSFQG 724
+ D + + L L ++ + T G +L + + +F G
Sbjct: 315 -----GYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
Query: 725 LSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEY--LEGELRLNMSAIQFKLSHP 782
++ F +G+ Q + + V+VGEY + L + I+F+ S
Sbjct: 370 VT-GQVVFR-NGERMGTIKFT---QFQDS--REVKVGEYNAVADTLEIINDTIRFQGS-- 420
Query: 783 SPPESVCSLPCD 794
PP+ D
Sbjct: 421 EPPKDDYKDDDD 432
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 98.7 bits (245), Expect = 8e-22
Identities = 32/278 (11%), Positives = 83/278 (29%), Gaps = 49/278 (17%)
Query: 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEV 132
E + + + + ++ E+ + + R VI+ S +
Sbjct: 172 FTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRN-------IQASERVVIMCASSDTI 224
Query: 133 AGVMRAVRRLNAT-GSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFL 191
+M R T G +++ + +++ + + + + ++
Sbjct: 225 RSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLL-- 282
Query: 192 NLTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQ 251
P F + F + +S + +
Sbjct: 283 ------RTVKPEF------EKFSMEVKSSVEKQGLNMEDYVNMFV--------------E 316
Query: 252 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 311
DA++ + +AL + L G ++++ +F+G++ D
Sbjct: 317 GFHDAILLYVLALHEV----------LRAGYSKKDGGKIIQQTWNRTFEGIA-GQVSIDA 365
Query: 312 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
+GD +++I + G + +G+Y E R M
Sbjct: 366 NGDRYGDFSVIAMTDVEAGTQE--VIGDYFGKEGRFEM 401
Score = 86.0 bits (212), Expect = 1e-17
Identities = 34/291 (11%), Positives = 80/291 (27%), Gaps = 40/291 (13%)
Query: 530 GWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPW-------FVDT 582
WS LV + E +L+ + + + + +
Sbjct: 153 HWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASE 212
Query: 583 RAYVVFRVILDKPRNMLRAR----VAAGIVSIALSISSLRDATSPTFFSSTEFWE---DH 635
R ++ ML A + + + + ++ +
Sbjct: 213 RVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQA 272
Query: 636 FRCKYPNSSRTPYNSHYST-ECTTHEKLSRDTLAFEKQLQ----FVSDAVMAFSIALDHM 690
+ + + + + L E + DA++ + +AL +
Sbjct: 273 YSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLALHEV 332
Query: 691 HADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQI 750
L G ++++ +F+G++ D +GD +++I +
Sbjct: 333 ----------LRAGYSKKDGGKIIQQTWNRTFEGIA-GQVSIDANGDRYGDFSVIAMTDV 381
Query: 751 RPGVYQWVQVGEYLEGELRLNMS---AIQFK-----LSHPSPPESVCSLPC 793
G + +G+Y E R M + + E S PC
Sbjct: 382 EAGTQE--VIGDYFGKEGRFEMRPNVKYPWGPLKLRIDENRIVEHTNSSPC 430
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 88.7 bits (219), Expect = 1e-18
Identities = 33/265 (12%), Positives = 78/265 (29%), Gaps = 44/265 (16%)
Query: 78 LEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM-TKPRARGVIVFGSDQEVAGVM 136
+ + +I + +E + D D L + + R + + S +M
Sbjct: 172 YMRVRERLNITVNHQEFVEGD--------PDHYPKLLRAVRRKGRVIYICSSPDAFRNLM 223
Query: 137 RAVRRLNAT-GSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTV 195
T + + D + + G + + + F +
Sbjct: 224 LLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKII--T 281
Query: 196 ENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSD 255
NP +++ F + + +N ++ E + D
Sbjct: 282 YKEPDNPEYLE------FLKQLKLLADKKFN--FTVEDGLKNIIP----------ASFHD 323
Query: 256 AVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDG 315
++ + A+ L T G + + + SFQG++ + K D++GD
Sbjct: 324 GLLLYVQAVTET----------LAQGGTVTDGENITQRMWNRSFQGVT-GYLKIDRNGDR 372
Query: 316 PARYNIIHFKQIRPGVYQWVQVGEY 340
+++ + P + V Y
Sbjct: 373 DTDFSLW---DMDPETGAFRVVLNY 394
Score = 65.6 bits (159), Expect = 4e-11
Identities = 26/164 (15%), Positives = 56/164 (34%), Gaps = 27/164 (16%)
Query: 627 SSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIA 686
+ E+ E F + + +N ++ E + D ++ + A
Sbjct: 286 DNPEYLE--FLKQLKLLADKKFN--FTVEDGLKNIIP----------ASFHDGLLLYVQA 331
Query: 687 LDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIH 746
+ L T G + + + SFQG++ + K D++GD +++
Sbjct: 332 VTET----------LAQGGTVTDGENITQRMWNRSFQGVT-GYLKIDRNGDRDTDFSLWD 380
Query: 747 FKQIRPGVYQWVQVGEYLEGELR-LNMSAIQFKLSHPSPPESVC 789
G ++ V EL ++ + + L +P P C
Sbjct: 381 M-DPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPKC 423
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 85.2 bits (210), Expect = 1e-17
Identities = 33/279 (11%), Positives = 86/279 (30%), Gaps = 54/279 (19%)
Query: 75 FEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAG 134
+EL ++ ++ + +++ + + + K M + + VI S + AG
Sbjct: 154 LQELIKAPSRYNLRLKIRQ-------LPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAG 206
Query: 135 VMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
+++ + + ++ + L ++P G + +
Sbjct: 207 ILKQALAMGMMTEYYHYIFTTLDL--------------FALDVEPYRY--SGVNMTGFRI 250
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
N + ++ P + +T+ +
Sbjct: 251 LNTENTQVSSIIEK-WSMERLQAPPKPDSGLLDGFMTTDA-----------------ALM 292
Query: 254 SDAVMAFSIALDHMHADLCQGKVGLCDAMRPTK-GPELLKYLRKVSFQGLSEDHFKFDKD 312
DAV S+A+ C+ +P + G + +++ ++GL+ F+K
Sbjct: 293 YDAVHVVSVAVQQFPQMTVSS--LQCNRHKPWRFGTRFMSLIKEAHWEGLT-GRITFNKT 349
Query: 313 GD--GPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
++I K+ ++G + LNM
Sbjct: 350 NGLRTDFDLDVISLKE-----EGLEKIGTWDPAS-GLNM 382
Score = 64.7 bits (157), Expect = 5e-11
Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 29/164 (17%)
Query: 616 SLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 675
+ + + S E W P + +T+
Sbjct: 249 RILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDA-----------------AL 291
Query: 676 VSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTK-GPELLKYLRKVSFQGLSEDHFKFDK 734
+ DAV S+A+ C+ +P + G + +++ ++GL+ F+K
Sbjct: 292 MYDAVHVVSVAVQQFPQMTVSS--LQCNRHKPWRFGTRFMSLIKEAHWEGLT-GRITFNK 348
Query: 735 DGD--GPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMSAIQ 776
++I K+ ++G + LNM+ Q
Sbjct: 349 TNGLRTDFDLDVISLKE-----EGLEKIGTWDPAS-GLNMTESQ 386
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 80.2 bits (197), Expect = 5e-16
Identities = 39/283 (13%), Positives = 82/283 (28%), Gaps = 54/283 (19%)
Query: 75 FEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAG 134
+ + A+ + + + ++ Y + L K + R VI+ +V
Sbjct: 137 LQAVLDSAAEKKWQVTAI-NVGNINNDKKDETYRSLFQDLELK-KERRVILDCERDKVND 194
Query: 135 VMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194
++ V + +Q V GF +
Sbjct: 195 IVDQVITIGKHVKGYHYIIANLGFTDGDLL----------KIQFGGANVSGF-----QIV 239
Query: 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVS 254
++ F++ +YP + +
Sbjct: 240 DYDDSLVSKFIER-WSTLEEKEYPGAHTATIKYTSA---------------------LTY 277
Query: 255 DAVMAFSIALDHMHADLCQ----GKVGLCDAMRPTK---GPELLKYLRKVSFQGLSEDHF 307
DAV + A ++ + G G C A G E+ + L++V +GLS +
Sbjct: 278 DAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG-NI 336
Query: 308 KFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
KFD++G NI+ K ++G + ++ +
Sbjct: 337 KFDQNGKRINYTINIMELKTNG-----PRKIGYW-SEVDKMVV 373
Score = 64.0 bits (155), Expect = 7e-11
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 36/167 (21%)
Query: 616 SLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 675
+ D E W +YP + +
Sbjct: 237 QIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSA---------------------L 275
Query: 676 VSDAVMAFSIALDHMHADLCQ----GKVGLCDAMRPTK---GPELLKYLRKVSFQGLSED 728
DAV + A ++ + G G C A G E+ + L++V +GLS
Sbjct: 276 TYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSG- 334
Query: 729 HFKFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMSA 774
+ KFD++G NI+ K ++G + ++ ++
Sbjct: 335 NIKFDQNGKRINYTINIMELKTNG-----PRKIGYW-SEVDKMVVTL 375
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 74.0 bits (181), Expect = 6e-14
Identities = 39/279 (13%), Positives = 81/279 (29%), Gaps = 64/279 (22%)
Query: 76 EELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGS-DQEVAG 134
++LE LL + D + P+A V+ F + +
Sbjct: 157 KKLETLLEGKESKSKKRNYENLDQ----------LSYDNKRGPKADKVLQFEPGTKNLTA 206
Query: 135 VMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194
++ + L A + + A + + L++T
Sbjct: 207 LLLEAKELEARVI--ILSASEDDATAVYKSAAM-----------------------LDMT 241
Query: 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVS 254
W V + Y+ + + + + +S
Sbjct: 242 GAGYV---WLV------------GEREISGSALRYAPDGII----GLQLINGKNESAHIS 282
Query: 255 DAVMAFSIALDHMHA--DLCQGKVGLCDAMRPTK-GPELLKYLRKVSFQGLSEDHFKFDK 311
DAV + A+ + ++ G K GP + L + +F++
Sbjct: 283 DAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNE 342
Query: 312 DGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
DGD A+Y+I++ + + VQVG + + N
Sbjct: 343 DGDRKFAQYSIMNLQNR-----KLVQVGIFNGSYIIQND 376
Score = 72.8 bits (178), Expect = 1e-13
Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 649 NSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHA--DLCQGKVGLCDAMR 706
S + + + + + +SDAV + A+ + ++ G
Sbjct: 254 ISGSALRYAPDGIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTN 313
Query: 707 PTK-GPELLKYLRKVSFQGLSEDHFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYL 764
K GP + L + +F++DGD A+Y+I++ + + VQVG +
Sbjct: 314 IWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNR-----KLVQVGIFN 368
Query: 765 EGELRLNMSAIQ 776
+ N I
Sbjct: 369 GSYIIQNDRKII 380
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 1e-13
Identities = 98/604 (16%), Positives = 176/604 (29%), Gaps = 214/604 (35%)
Query: 220 SSRTPYN-SHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGL 278
S+R P SH S E + + QLQ + + L + G
Sbjct: 5 STR-PLTLSHGSLEHVLL--VPTASFFIASQLQ-------------EQFNKILPEPTEGF 48
Query: 279 CDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHF--KQIRPGVYQWVQ 336
PT EL+ ++ + + + P +
Sbjct: 49 AADDEPTTPAELV-------------------------GKF--LGYVSSLVEPS-----K 76
Query: 337 VGEYLEG-ELRLNMFGAGFCF-----TVVYAAL-------LTKTNRISRIFNAGKRTAKR 383
VG++ + L L F + + A L L KT + + + + AKR
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 384 PNFITPKSQLM------------ICGG----------LVS--------VQVLINGV---- 409
P S L I GG L V LI
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 410 WMLV-SPPRAIHHYPSREDNILVCSSFI-------NASYM--IAFGYP-IFLIVVCTVYA 458
L+ + A + + NIL ++ + Y+ I P I +I + Y
Sbjct: 196 SELIRTTLDAEKVFT-QGLNIL---EWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YV 250
Query: 459 ILTRNI---PEAFNESKHIGFTMYTTCVI----------WLAF-------VPLYFGTGNH 498
+ + + P G T ++ ++ W +F + + F G
Sbjct: 251 VTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-- 307
Query: 499 MPLRITTMSVTISLSASVTVACLFSPKVRSDGWSARGLVSDGSEAEVEGTLSLQPQANPV 558
+R SL S+ + D S EG S P + +
Sbjct: 308 --VRCYEAYPNTSLPPSI--------------------LED-SLENNEGVPS--PMLS-I 341
Query: 559 KGFDDYFLNLTVEN-NRRNPWFVDTRAYVVFRVILDKPRNMLRARVAAG-IVSIALSISS 616
+ V N P + + +++ +N+ V +G S+ +
Sbjct: 342 SNLTQEQVQDYVNKTNSHLP--AGKQVEI---SLVNGAKNL----VVSGPPQSLYGLNLT 392
Query: 617 LRDATSPTFFSSTEFWEDHFRCKYPNSSR------------TPYNSHYSTECTTH--EKL 662
LR A +P+ + + P S R +P++SH + + L
Sbjct: 393 LRKAKAPS---------GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 663 SRDTLAFE-KQLQF-V------SDAVMAFSIALDHMHAD-LCQGKV--GLCDAMRPTK-- 709
++ ++F K +Q V SD + S ++ D + + V + T
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 710 --GP 711
GP
Sbjct: 503 DFGP 506
Score = 50.4 bits (120), Expect = 4e-06
Identities = 62/365 (16%), Positives = 99/365 (27%), Gaps = 129/365 (35%)
Query: 604 AAGIVSIALSISSLRDATS-PT--FFSSTEFWEDHFRCKYPNSSRTP------------- 647
A + LS SL PT FF +++ E F P +
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELV 61
Query: 648 --YNSHYSTECTTHEKLSRDTL------AFEKQLQFVSDAVMAFSIALDHMHADLCQGKV 699
+ + S+ + D + FE +D + A + L D K
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQ-ENDTTLVKT 119
Query: 700 ---------GLCDAMRPTKGPELLKYLRKVS---------F--QGLSEDHFK-----FDK 734
A RP R V F QG ++D+F+ +
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ- 178
Query: 735 DGDGPARYNIIHFKQIRPGVYQWVQ-VGEYLEGELRLNMSA-------IQFK--LSHPS- 783
Y V ++ E L +R + A + L +PS
Sbjct: 179 ------TY--------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 784 -PPES------VCSLPCDIG--QAKKYVEGESCCWHCFNCSQYQIRLPSDETQCLTCPE- 833
P + + S P IG Q + Y +T
Sbjct: 225 TPDKDYLLSIPI-SCPL-IGVIQ----------------LAHY----------VVTAKLL 256
Query: 834 GTKPDLLRQN------CLE--IPAMFIEITSTWAIGAMALSSTGILMTLLIVGVFIR-HN 884
G P LR + + A+ I T +W + +S + L +GV R +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGV--RCYE 312
Query: 885 NTPVV 889
P
Sbjct: 313 AYPNT 317
Score = 35.8 bits (82), Expect = 0.081
Identities = 39/263 (14%), Positives = 70/263 (26%), Gaps = 87/263 (33%)
Query: 187 DDYFLNL----TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNS----HYSTECTTHEK 238
D++F + ++ NP L HF + R Y++ EK
Sbjct: 1650 DNHFKDTYGFSILDIVINNP----VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 239 LSRD------TLAFE------KQLQFVSDAVMAFSIAL-------------DHM--H--- 268
+ ++ + F QF A+ A H
Sbjct: 1706 IFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG 1765
Query: 269 ---ADLCQGKV-GLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHF 324
A V + + ++ Y R G++ +D G + Y +I
Sbjct: 1766 EYAALASLADVMSIESLVE------VVFY-R-----GMTMQVA-VPRDELGRSNYGMI-- 1810
Query: 325 KQIRPGVYQWVQVGEYLEGELRLNMFGAGFCFTVVYAALLTKTNRISRIFNAGKRTAKRP 384
I PG +V E V + +T + I
Sbjct: 1811 -AINPG-----RVAASFSQE----------ALQYVVERVGKRTGWLVEI-------V--- 1844
Query: 385 NFITPKSQLMICGGLVSVQVLIN 407
N+ Q + G L ++ + N
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTN 1867
Score = 32.3 bits (73), Expect = 1.1
Identities = 34/176 (19%), Positives = 51/176 (28%), Gaps = 53/176 (30%)
Query: 835 TKPDLLRQNCLE----IPAMFIEITSTWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVK 890
T+P L LE +P T+++ A L F + P
Sbjct: 6 TRPLTLSHGSLEHVLLVP------TASF-FIASQLQEQ-----------FNKILPEPTEG 47
Query: 891 AAGRE--LSYVLLFGILLCYLVTFVLVLKPSD----LVCAIQRFGAGFCF-----TVVYA 939
A + + L G L Y+ + V K L + F + + A
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-A 106
Query: 940 AL-------LTKTNRISRIFNAGKRTAKRPNFITPKSQLM------------ICGG 976
L L KT + + + + AKRP S L I GG
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Score = 31.6 bits (71), Expect = 1.9
Identities = 57/326 (17%), Positives = 87/326 (26%), Gaps = 126/326 (38%)
Query: 696 QG--KVGLCDAMRPTKGPELLKYLRKVSFQGLSE--DHFKFDKDG--------DGPARYN 743
QG + G M G +L Y + Q + D+ D G + P
Sbjct: 1624 QGSQEQG----M----GMDL--YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL- 1672
Query: 744 IIHFKQIRPGVYQWVQVGEYLEGELRLNMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVE 803
IHF G +R N SA+ F+ D + +
Sbjct: 1673 TIHF-------------GGEKGKRIRENYSAMIFET------------IVDGKLKTEKIF 1707
Query: 804 GESCCWHCFNCSQYQIRLPSDETQCLTCPEGTKPDLLRQNCLEIPAMFIEITSTWAIGAM 863
E + + Y R L+ + T Q PA+ A
Sbjct: 1708 KEIN----EHSTSYTFRSEKGL---LSATQFT------Q-----PALT-----LMEKAAF 1744
Query: 864 A-LSSTGILMTLLIVGVFIRHNNTPVVKA-AGRELS---YVLLF---GIL----LCYLV- 910
L S G++ P AG S Y L ++ L +V
Sbjct: 1745 EDLKSKGLI---------------PADATFAG--HSLGEYAALASLADVMSIESLVEVVF 1787
Query: 911 ---TFVLVLKPSD-------LVCAI--QRFGAGFC---FTVVYAALLTKTNRISRIFNAG 955
+ V P D + AI R A F V + +T + I
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI---- 1843
Query: 956 KRTAKRPNFITPKSQLMICGGLVSVQ 981
N+ Q + G L ++
Sbjct: 1844 ---V---NYNVENQQYVAAGDLRALD 1863
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 69.4 bits (169), Expect = 1e-12
Identities = 40/279 (14%), Positives = 77/279 (27%), Gaps = 55/279 (19%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVA 133
EEL S ++V+ + + R ++ ++ + +I+ +
Sbjct: 154 RLEELVRGFLISKETLSVRM-------LDDSRDPTPLLKEIRDD-KVSTIIIDANASISH 205
Query: 134 GVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
V+R L T +F L DG + L +
Sbjct: 206 LVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFS---------------M 250
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
++ P FV + + + +
Sbjct: 251 FNTSHPFYPEFVR-----SLNMSWRENCEASTYPGPALSA-----------------ALM 288
Query: 254 SDAVMAFSIALDHMHADLCQGKVGL-CDAMRPTK-GPELLKYLRKVSFQGLSEDHFKFDK 311
DAV A+ ++ G L C + G L+ YLR V + GL+ +F+
Sbjct: 289 FDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTG-RVEFNS 347
Query: 312 DGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 349
G I+ + ++G + L M
Sbjct: 348 KGQRTNYTLRILEKSR-----QGHREIGVWYSNR-TLAM 380
Score = 61.0 bits (147), Expect = 8e-10
Identities = 26/171 (15%), Positives = 51/171 (29%), Gaps = 31/171 (18%)
Query: 616 SLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 675
S+ + + P + +R S+ +
Sbjct: 249 SMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAA---------------------L 287
Query: 676 VSDAVMAFSIALDHMHADLCQGKVGL-CDAMRPTK-GPELLKYLRKVSFQGLSEDHFKFD 733
+ DAV A+ ++ G L C + G L+ YLR V + GL+ +F+
Sbjct: 288 MFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTG-RVEFN 346
Query: 734 KDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEGE-LRLNMSAIQFKLSHP 782
G I+ + ++G + L +N + + P
Sbjct: 347 SKGQRTNYTLRILEKSR-----QGHREIGVWYSNRTLAMNATTLDILELVP 392
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 67.9 bits (165), Expect = 4e-12
Identities = 30/275 (10%), Positives = 77/275 (28%), Gaps = 73/275 (26%)
Query: 76 EELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGV 135
++ + S + ++E L+ D + + D + + K ++ ++++ + +E +
Sbjct: 154 NKIRSTIENSFVGWELEEVLLLDMSLDD---GDSKIQNQLKKLQSPIILLYCTKEEATYI 210
Query: 136 MRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLT 194
+ TG ++W+ +
Sbjct: 211 FEVANSVGLTGYGYTWIVPSLVA------------------------------------- 233
Query: 195 VENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVS 254
+ V + + + ++
Sbjct: 234 -----GDTDTVPSEFPTGLISVSYDEWDYGLPARV-----------------RDGIAIIT 271
Query: 255 DAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGD 314
A +H + R + L +YL V+F+G F +DG
Sbjct: 272 TAASDM--LSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRD---LSFSEDGY 326
Query: 315 GP-ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348
+ II + R +W +VG++ + L++
Sbjct: 327 QMHPKLVIILLNKER----KWERVGKWKDKSLQMK 357
Score = 49.4 bits (117), Expect = 3e-06
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 674 QFVSDAVMAFSIALDHMHAD-----LCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSED 728
V D + + A M ++ + R + L +YL V+F+G
Sbjct: 261 ARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGRD-- 318
Query: 729 HFKFDKDGDGP-ARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 771
F +DG + II + R +W +VG++ + L++
Sbjct: 319 -LSFSEDGYQMHPKLVIILLNKER----KWERVGKWKDKSLQMK 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 5e-12
Identities = 125/755 (16%), Positives = 213/755 (28%), Gaps = 300/755 (39%)
Query: 159 RGLVSD-------GSEAEVEGTLSL-----QPQANPVKGF------DDYFLNLTVENNRR 200
+ ++S S+ V GTL L Q V+ F +Y
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY----------- 91
Query: 201 NPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAF 260
+ + P + P+ Y ++L D F K VS
Sbjct: 92 -KFLMSPI---KTEQRQPSMMTRMYIE-------QRDRLYNDNQVFAKY--NVS------ 132
Query: 261 SIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYN 320
R + LR+
Sbjct: 133 ----------------------RL----QPYLKLRQ------------------------ 142
Query: 321 IIHFKQIRPGVYQWVQVGEYLEGELRLNMFGAGFCFTVVYAALLTKTNRI-----SRIF- 374
++RP + V ++G + G+G T V A + + ++ +IF
Sbjct: 143 --ALLELRPA--KNV----LIDG-----VLGSGK--TWV-ALDVCLSYKVQCKMDFKIFW 186
Query: 375 -NAGKRTAKRPNFITPKSQLMICGGLVSVQVLINGVWMLVSPPRAIHHYPSREDNILVCS 433
N +P++ L + L + I+ W S + R +I
Sbjct: 187 LNLKNCN-------SPETVLEM---LQKLLYQIDPNW--TSRSDHSSNIKLRIHSI---Q 231
Query: 434 SFINASYMIAFGYPIFLIVVCTVYAILTRNIPEAFNESKHIGFTMYTTCVIWLAFVPLYF 493
+ + + + Y L+V+ V AFN + C I
Sbjct: 232 AELR-RLLKSKPYENCLLVLLNVQ---NAKAWNAFN----LS------CKI--------- 268
Query: 494 GTGNHMPLRITT--MSVTISLSASVTVACLFSPKVRSDGWSARGLVSDGSEAEVEGTLS- 550
L +TT VT LSA+ T + D S L + EV+ L
Sbjct: 269 -------L-LTTRFKQVTDFLSAATTT------HISLDHHS-MTL----TPDEVKSLLLK 309
Query: 551 --------LQPQA---NPVKGFDDYFLNLTVENNRRNPWFVDTRAYVVFR-VILDKPRNM 598
L + NP + L++ E+ R T ++ V DK +
Sbjct: 310 YLDCRPQDLPREVLTTNPRR------LSIIAESIRDGL---ATWDN--WKHVNCDKLTTI 358
Query: 599 LRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFR-CK-YPNSSRTP--------Y 648
I S++ L E+ F +P S+ P +
Sbjct: 359 -----------IESSLNVL---------EPAEY-RKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 649 NSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPT 708
+ S KL + +L EKQ + +I++ ++ +L +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLV-EKQPK-------ESTISIPSIYLELKV---------KLE 440
Query: 709 KGPELLKYLRKVSFQGLSEDHF----KFDKDGDGPAR-----YNII--HFKQIRPGVYQW 757
L + + DH+ FD D P Y+ I H K I
Sbjct: 441 NEYALHRSIV---------DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP---- 487
Query: 758 VQVGEYLEG--ELRLNMSAIQFKLSHPSPPESVC-SLPCDIGQAKKYVEGESCCWH-CFN 813
E + + L+ ++ K+ H S + S+ + Q K Y + C N
Sbjct: 488 ----ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDN 537
Query: 814 CSQYQIR-------LPSDETQCLTCPEGTKPDLLR 841
+Y+ LP E + DLLR
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKY---TDLLR 569
Score = 51.0 bits (121), Expect = 2e-06
Identities = 52/390 (13%), Positives = 91/390 (23%), Gaps = 164/390 (42%)
Query: 558 VKGFD-----DYFLN-LTVEN-----NRRNPWFVDTRAYVVFRVILDKPRNMLRARVAAG 606
V FD D + L+ E ++ + +F +L K M++ V
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDA---VSGTLRLFWTLLSKQEEMVQKFV--- 83
Query: 607 IVSIALSISSLRDATSPTF-FSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRD 665
+ + F + + P+ Y ++L D
Sbjct: 84 -----------EEVLRINYKFLMSPI---KTEQRQPSMMTRMYIE-------QRDRLYND 122
Query: 666 TLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGL 725
F K VS R + LR+ L
Sbjct: 123 NQVFAKY--NVS----------------------------RL----QPYLKLRQ----AL 144
Query: 726 SEDHFKFDKDGDGPARYNIIH-------------------FKQIRP-GVYQWVQVGEYLE 765
E PA+ +I + ++ W+ +
Sbjct: 145 LELR---------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNS 194
Query: 766 GELRLNMSA---IQFKLSHPSPPESVCSLPCDIGQAKKYV-------EGESC-------- 807
E L M Q + S + ++ I + + E+C
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 808 ---CWHCFN--C----------------SQYQIRLPSDETQC-LTCPE---------GTK 836
W+ FN C + + D LT E +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 837 P-DLLRQNCLEIP-------AMFIEITSTW 858
P DL R+ P + +TW
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Score = 48.7 bits (115), Expect = 1e-05
Identities = 55/398 (13%), Positives = 104/398 (26%), Gaps = 114/398 (28%)
Query: 13 LEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARDDPDFIPVLMLFLRET 72
LL+K + +K V++ Y +++ + T+ R P T
Sbjct: 68 FWTLLSKQE---EMVQKFVEE---VLRINYKFLMSPIKTEQR---QPS---------MMT 109
Query: 73 TAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEV 132
+ E L + + K + V+ + Y + L+ A+ V++ G V
Sbjct: 110 RMYIEQRDRLYNDN------QVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDG----V 158
Query: 133 AG---------VMRA--VRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 181
G V + V+ F W+ + + S + E+ L Q N
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF-WL-----NLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 182 PVKGFD---DYFLNLTVENNRRNPWFVDPPLE------DH-----------FRCKYPNSS 221
D + L + P E + CK ++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 222 RTPYNSHY-STECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADL----CQG-- 274
R + + S TTH L ++ + LD DL
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 275 -KVGLCDAMRPTKGPELLKYLRKV-----------SFQGLSEDHFK--------FDKDGD 314
++ + G + V S L ++ F
Sbjct: 328 RRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 315 GPARYNIIHFKQIRPGVYQ--WVQVGEYLEGELRLNMF 350
I + W V + + + +N
Sbjct: 387 ------------IPTILLSLIWFDVIKS-DVMVVVNKL 411
Score = 37.9 bits (87), Expect = 0.020
Identities = 45/303 (14%), Positives = 87/303 (28%), Gaps = 95/303 (31%)
Query: 7 YIAFEELEVLLAKSSICIAVKEKLVKDSGVAEERA-YDDIVTKLMTKPRARDDPDFIP-- 63
++ ++L ++ +SS+ L + AE R +D + + IP
Sbjct: 349 HVNCDKLTTII-ESSL-----NVL--EP--AEYRKMFDRLS--VF-----PPSAH-IPTI 390
Query: 64 VLMLFLRETTAFEELEVL--LAKSSICIAVKEKLVKDSGVAEERAY--DDIVTKLMTKPR 119
+L L + + + V+ L K S+ + K +E I +L K
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSL-------VEKQP---KESTISIPSIYLELKVKL- 439
Query: 120 ARGVIVFGSDQEVAGVMRAVRRLNATGSFSWVGSDGWSARGLVSDG----------SEAE 169
+ E A V N +F D D E
Sbjct: 440 ---------ENEYALHRSIVDHYNIPKTF-----DSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 170 VEGTLSLQPQANPVKGFDDYFLNLT-VENNRRN---PWFVDPPLEDHF-RCKYPNSSRTP 224
+ F FL+ +E R+ W + + + K+
Sbjct: 486 ---------HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF------- 529
Query: 225 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 284
Y + +E+L L F +++ + + DL + + L M
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIE---------ENLICSKYTDLLR--IAL---MAE 575
Query: 285 TKG 287
+
Sbjct: 576 DEA 578
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 64.8 bits (157), Expect = 5e-11
Identities = 29/276 (10%), Positives = 77/276 (27%), Gaps = 59/276 (21%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVA 133
+ + A+ + + L ++ + + K + R V+V + +
Sbjct: 143 VLQRVLDTAAEKNWQVTAVNILTTTEEGYR------MLFQDLEKKKERLVVVDCESERLN 196
Query: 134 GVMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLN 192
++ + +L G + ++ ++ ++ E+ T
Sbjct: 197 AILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTG----------------FQ 240
Query: 193 LTVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 252
L + + +
Sbjct: 241 LVNYTDTIPARIMQQ-WRTSDSRDHTRVDWKRPKYTS---------------------AL 278
Query: 253 VSDAVMAFSIALDHMHADLC----QGKVGLCDAMRPT---KGPELLKYLRKVSFQGLSED 305
D V + A + +G G C A +G ++ + L++V F+GL+
Sbjct: 279 TYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLT-G 337
Query: 306 HFKFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEY 340
+ +F++ G ++I K ++G +
Sbjct: 338 NVQFNEKGRRTNYTLHVIEMKHDG-----IRKIGYW 368
Score = 55.5 bits (133), Expect = 4e-08
Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 35/156 (22%)
Query: 616 SLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 675
L + T + W +
Sbjct: 240 QLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTS---------------------AL 278
Query: 676 VSDAVMAFSIALDHMHADLC----QGKVGLCDAMRPT---KGPELLKYLRKVSFQGLSED 728
D V + A + +G G C A +G ++ + L++V F+GL+
Sbjct: 279 TYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLT-G 337
Query: 729 HFKFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEY 763
+ +F++ G ++I K ++G +
Sbjct: 338 NVQFNEKGRRTNYTLHVIEMKHDG-----IRKIGYW 368
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 64.4 bits (156), Expect = 6e-11
Identities = 26/275 (9%), Positives = 77/275 (28%), Gaps = 58/275 (21%)
Query: 75 FEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAG 134
+ + +++ + + + + + + I+ ++ + + + ++ + +
Sbjct: 146 LQAIMEAAVQNNWQVTARSV----GNIKDVQEFRRIIEEMDRR-QEKRYLIDCEVERINT 200
Query: 135 VMRAVRRLNATGS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
++ V L + ++ ++ L+ Q
Sbjct: 201 ILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGA-NITGFQIV-------------- 245
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
N NP F ++ + +
Sbjct: 246 ----NNENPMVQQ------FIQRWVRLDEREFPEAKNAPLKYTS-------------ALT 282
Query: 254 SDAVMAFSIALDHMHADLC----QGKVGLCDAMRPTK---GPELLKYLRKVSFQGLSEDH 306
DA++ + A ++ +G G C A G ++ + L+ V QG++ +
Sbjct: 283 HDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGN- 341
Query: 307 FKFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEY 340
+FD G ++ K + G +
Sbjct: 342 IQFDTYGRRTNYTIDVYEMKV-----SGSRKAGYW 371
Score = 58.3 bits (140), Expect = 6e-09
Identities = 25/174 (14%), Positives = 51/174 (29%), Gaps = 35/174 (20%)
Query: 616 SLRDATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQF 675
+ + +P + W ++P + P
Sbjct: 243 QIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTS---------------------AL 281
Query: 676 VSDAVMAFSIALDHMHADLC----QGKVGLCDAMRPTK---GPELLKYLRKVSFQGLSED 728
DA++ + A ++ +G G C A G ++ + L+ V QG++ +
Sbjct: 282 THDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGN 341
Query: 729 HFKFDKDGD-GPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNMSAIQFKLSH 781
+FD G ++ K + G + E E + S H
Sbjct: 342 -IQFDTYGRRTNYTIDVYEMKV-----SGSRKAGYWNEYERFVPFSGTHHHHHH 389
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 40.8 bits (96), Expect = 0.002
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLM-TKPRARGVIVFGSDQEV 132
A +E L ++ I ++ V KL+ +A + + + +
Sbjct: 157 AITGVERTLKAHALAITAMASYPRN-----TANVGPAVDKLLAADVQA--IFLGATAEPA 209
Query: 133 AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFD 187
A +R R +G L V G NP K +
Sbjct: 210 AQFVRQYRARGGEAQL--LGLSSIDPGILQKVAGLDAVRGYSLALVMPNPGKSVN 262
>3h5l_A Putative branched-chain amino acid ABC transporter; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Ruegeria pomeroyi}
Length = 419
Score = 38.2 bits (89), Expect = 0.011
Identities = 36/263 (13%), Positives = 55/263 (20%), Gaps = 78/263 (29%)
Query: 93 EKLVKDSG---VAEERAYDD-------IVTKLM-TKPRARGVIVFGS--DQEVAGVMRAV 139
+ G E + KL P VIV Q+ A M
Sbjct: 185 RDGAGEYGYDVSLFE-TVAIPVSDWGPTLAKLRADPP---AVIVVTHFYPQDQALFMNQF 240
Query: 140 RRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNR 199
G S + G Y L +
Sbjct: 241 MTDPTNSLV--YLQYGASLAAFRDIAGDN-SVGVT--------------YATVLGTLQDE 283
Query: 200 RNPWFVDPPLEDHFRCKYPNSSRTPYNSH-YSTECTTHEKLSRDTLAFEKQLQFVSDAVM 258
F ++ +Y + S T Y A+
Sbjct: 284 MGDAFAK-----AYKERYGDLSSTASGCQTY-------------------------SALY 313
Query: 259 AFSIALDHMHADLCQGKVGLCDAMRPTKGPE-LLKYLRKVSFQGLSEDHFKFDKDGDGPA 317
A+SIA G A + + LR + F+G +F D
Sbjct: 314 AYSIAAA---------LAGGPGAPYDDVQNKAVADRLRSLIFRGPV-GTMRFHADTQSAW 363
Query: 318 RYNIIH--FKQIRPGVYQWVQVG 338
Y P ++ +
Sbjct: 364 SYPTETNDPSLGMPHIFSQIFDK 386
Score = 32.8 bits (75), Expect = 0.60
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 13/87 (14%)
Query: 678 DAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPE-LLKYLRKVSFQGLSEDHFKFDKDG 736
A+ A+SIA G A + + LR + F+G +F D
Sbjct: 310 SALYAYSIAAA---------LAGGPGAPYDDVQNKAVADRLRSLIFRGPV-GTMRFHADT 359
Query: 737 DGPARYNIIH--FKQIRPGVYQWVQVG 761
Y P ++ +
Sbjct: 360 QSAWSYPTETNDPSLGMPHIFSQIFDK 386
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 36.3 bits (84), Expect = 0.050
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 93 EKLVKDSG---VAEERAYDD-------IVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRL 142
K ++ G V + ++ + V+ VA +++ +RL
Sbjct: 164 RKAARELGLQIVDVQ-EVGSGNLDNTALLKRFEQA-GVEYVVHQNVAGPVANILKDAKRL 221
Query: 143 NATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 182
+G+ L++ +A EG L
Sbjct: 222 GLKMRH--LGAHYTGGPDLIALAGDA-AEGFLWATSFYMA 258
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo
sapiens} PDB: 3thm_F*
Length = 156
Score = 32.8 bits (74), Expect = 0.25
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 15/79 (18%)
Query: 764 LEGELRLNMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHC-------FNCSQ 816
+ ++ I K + G + +G+ C C +C+
Sbjct: 3 SSKSVNAQVTDINSKGLELRKTVTTVETQNLEGL---HHDGQFCHKPCPPGERKARDCTV 59
Query: 817 YQIRLPSDETQCLTCPEGT 835
DE C+ C EG
Sbjct: 60 -----NGDEPDCVPCQEGK 73
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 31.9 bits (73), Expect = 0.94
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 869 GILMTLLIVGVFIRHNNTPVVKAAGRELSYVLLFGILLCYLVTFVLVLK----------P 918
G+++ +++ +F + +P +S V + L+ YL T +L P
Sbjct: 326 GLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP 385
Query: 919 SDLVCAIQRFGAGFCFTVVYAALLT 943
+ L +C V +
Sbjct: 386 AYLAVTT--IAFLYCIWAVVGSGAK 408
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 29.4 bits (66), Expect = 0.95
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 789 CSLPCDIGQAKKYVEGESCCWH--CFNCSQ 816
C+ P KY+ E WH CFNC +
Sbjct: 11 CTNPISGLGGTKYISFEERQWHNDCFNCKK 40
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN
actin- interacting protein, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 29.4 bits (66), Expect = 0.99
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 789 CSLPCDIGQAKKYVEGESCCWH--CFNCSQ 816
CS P K++ + WH CFNC +
Sbjct: 11 CSKPISGLTGAKFICFQDSQWHSECFNCGK 40
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices,
oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas
stutzeri}
Length = 474
Score = 30.9 bits (70), Expect = 2.1
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 476 FTMYTTCVIWLAFVPLYFGTGNHM-PLRI 503
++T VI+ F T +
Sbjct: 57 RPLHTNAVIFAFGGCALFATSYYSVQRTC 85
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor
immunomodulator, TNF alpha receptor; 2.0A {Vaccinia
virus}
Length = 142
Score = 29.7 bits (66), Expect = 2.5
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 788 VCSLPCDIGQAKKYVEGESCCWHCFNCSQ----YQIRLPSDE--TQCLTCPEGT 835
+C CD + C C ++ Y + + T C C +GT
Sbjct: 80 ICH--CDSNSYCLLKASDGNCVTCAPKTKCGRGYGKKGEDEMGNTICKKCRKGT 131
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 29.3 bits (65), Expect = 3.3
Identities = 15/93 (16%), Positives = 21/93 (22%), Gaps = 25/93 (26%)
Query: 776 QFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHCFNCS-------------------- 815
+S S ++ PC G V + C C C+
Sbjct: 26 NGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCK-PCTWCNLRSGSERKQLCTATQDTVCR 84
Query: 816 ----QYQIRLPSDETQCLTCPEGTKPDLLRQNC 844
+ C CP G Q C
Sbjct: 85 CRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQAC 117
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 29.5 bits (65), Expect = 4.7
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 792 PCDIGQAKKYVEGESCCWHCFNCS--QYQIRLPSD--ETQCLTCPEGT 835
IG + C C Y ++ C +CP GT
Sbjct: 7 SNLIGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGT 54
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 29.8 bits (66), Expect = 5.0
Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 787 SVCSLPCDIGQAKKYVEGESCCWH---CFNCSQYQIRLPSDETQCLTCPEG 834
S C C E C H NCSQ P D T+C+ C
Sbjct: 186 SHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQ-----PDDPTKCVACRNF 231
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 28.9 bits (65), Expect = 5.5
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 292 KYLRKVSFQGLSEDH-------FK-FDKDGDG 315
KY K+ + F D +G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
Score = 28.9 bits (65), Expect = 5.5
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 8/32 (25%)
Query: 715 KYLRKVSFQGLSEDH-------FK-FDKDGDG 738
KY K+ + F D +G+G
Sbjct: 4 KYAVKLKTDFDNPRWIKRHKHMFDFLDINGNG 35
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 28.5 bits (63), Expect = 6.5
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 8/49 (16%)
Query: 792 PCDIGQAKKYVEGESCCWHCFNCS--QYQIRL---PSDETQCLTCPEGT 835
C G+ Y+ ++ C C Y P +T C C G+
Sbjct: 4 VCPQGK---YIHPQNNSICCTKCHKGTYLYNDCPGPGQDTDCRECESGS 49
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 28.6 bits (63), Expect = 6.6
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 776 QFKLSHPSPPESVCSLPCDIGQAKKYVEGESC--CWHCFNCS--QYQIRL--PSDETQCL 829
+ S C G +G+ C C S Q + S +T C
Sbjct: 66 GLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQDTLCQ 125
Query: 830 TCPEGT 835
CP GT
Sbjct: 126 NCPPGT 131
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 29.3 bits (66), Expect = 6.8
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 406 INGVWMLVSPP---RAIHHYPSREDNILVCS 433
+ G+ + S + + +R D+IL+ +
Sbjct: 15 VEGIPLFWSIAEHWSQVESFEARPDDILIST 45
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase
family 51; 2.50A {Bifidobacterium longum}
Length = 574
Score = 29.6 bits (65), Expect = 6.9
Identities = 15/77 (19%), Positives = 29/77 (37%)
Query: 503 ITTMSVTISLSASVTVACLFSPKVRSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFD 562
+TT + S + SP + G +A + + G+ + +++L A PV
Sbjct: 1 MTTHNSQYSAETTHPDKQESSPAPTAAGTTASNVSTTGNATTPDASIALNADATPVADVP 60
Query: 563 DYFLNLTVENNRRNPWF 579
VE+ R +
Sbjct: 61 PRLFGSFVEHLGRCVYG 77
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 28.9 bits (64), Expect = 8.4
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 7/79 (8%)
Query: 771 NMSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESCCWHCFNCSQYQIRLPSDETQCLT 830
+ I + P + ++ C C QC
Sbjct: 241 GLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY------QCA- 293
Query: 831 CPEGTKPDLLRQNCLEIPA 849
CP G K + C + +
Sbjct: 294 CPTGVKLLENGKTCKDGNS 312
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 9.7
Identities = 40/175 (22%), Positives = 62/175 (35%), Gaps = 42/175 (24%)
Query: 28 EKLVKDSGV----AEERAYDDIVTKLMTKP---RARDDP---------DFIPVLMLFLRE 71
EK+ GV +E A++ + L+T + P F+P L +E
Sbjct: 690 EKM----GVRTFSQKEMAFN--LLGLLTPEVVELCQKSPVMADLNGGLQFVPEL----KE 739
Query: 72 TTAFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVF----G 127
TA E L+ S + AV + + V + D ++ +PRA + F
Sbjct: 740 FTAKLRKE-LVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDFPELKP 798
Query: 128 SDQEVA------GVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSL 176
Q + + R+ F+ VG G SAR E E G SL
Sbjct: 799 YKQVKQIAPAELEGLLDLERVIVVTGFAEVGPWG-SART----RWEMEAFGEFSL 848
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,218,531
Number of extensions: 945848
Number of successful extensions: 2199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2127
Number of HSP's successfully gapped: 85
Length of query: 981
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 878
Effective length of database: 3,825,930
Effective search space: 3359166540
Effective search space used: 3359166540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.1 bits)