RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1666
(981 letters)
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 187 bits (475), Expect = 8e-52
Identities = 97/275 (35%), Positives = 152/275 (55%), Gaps = 6/275 (2%)
Query: 74 AFEELEVLLAKSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVA 133
+ + L A+ +CIA +K+ ++G + P+AR V+ F V
Sbjct: 205 GMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRL--LRKLRERLPKARVVVCFCEGMTVR 262
Query: 134 GVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNL 193
G++ A+RRL G FS +GSDGW+ R V +G E E G ++++ Q+ V+ FDDYFL L
Sbjct: 263 GLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKL 322
Query: 194 TVENNRRNPWFVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFV 253
++ N RNPWF + + F+C+ P N ++ CT +E L + + + ++ FV
Sbjct: 323 RLDTNTRNPWFPEF-WQHRFQCRLPGHLLE--NPNFKKVCTGNESLEENYV-QDSKMGFV 378
Query: 254 SDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDG 313
+A+ A + L +MH LC G VGLCDAM+P G +LL +L K SF G+S + FD+ G
Sbjct: 379 INAIYAMAHGLQNMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVGVSGEEVWFDEKG 438
Query: 314 DGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLN 348
D P RY+I++ + Y +V VG + EG L ++
Sbjct: 439 DAPGRYDIMNLQYTEANRYDYVHVGTWHEGVLNID 473
Score = 151 bits (382), Expect = 1e-39
Identities = 79/248 (31%), Positives = 118/248 (47%), Gaps = 52/248 (20%)
Query: 528 SDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWFVDTRAYVV 587
SDGW+ R V +G E E G ++++ Q+ V+ FDDYFL L ++ N RNPWF
Sbjct: 282 SDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWF-------- 333
Query: 588 FRVILDKPRNMLRARVAAGIVSIALSISSLRDATSPTFFSSTEFWEDHFRCKYPNSSRTP 647
EFW+ F+C+ P
Sbjct: 334 -----------------------------------------PEFWQHRFQCRLPGHLLE- 351
Query: 648 YNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRP 707
N ++ CT +E L + + + ++ FV +A+ A + L +MH LC G VGLCDAM+P
Sbjct: 352 -NPNFKKVCTGNESLEENYV-QDSKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMKP 409
Query: 708 TKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGE 767
G +LL +L K SF G+S + FD+ GD P RY+I++ + Y +V VG + EG
Sbjct: 410 IDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHEGV 469
Query: 768 LRLNMSAI 775
L ++ I
Sbjct: 470 LNIDDYKI 477
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 79.8 bits (195), Expect = 3e-16
Identities = 34/265 (12%), Positives = 83/265 (31%), Gaps = 44/265 (16%)
Query: 88 CIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRA--RGVIVFGSDQEVAGVMRAVRRLNAT 145
+E+ + S + + D + ++ +A R VI+ S + +M R T
Sbjct: 176 HEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMT 235
Query: 146 GS-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPWF 204
+++ + +++ + + + + ++ P F
Sbjct: 236 SGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLL--------RTVKPEF 287
Query: 205 VDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIAL 264
+ F + +S + E DA++ + +AL
Sbjct: 288 ------EKFSMEVKSSVEKQGLNMEDYVNMFVE--------------GFHDAILLYVLAL 327
Query: 265 DHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIHF 324
+ L G ++++ +F+G++ D +GD +++I
Sbjct: 328 HEV----------LRAGYSKKDGGKIIQQTWNRTFEGIA-GQVSIDANGDRYGDFSVIAM 376
Query: 325 KQIRPGVYQWVQVGEYLEGELRLNM 349
+ G +G+Y E R M
Sbjct: 377 TDVEAG--TQEVIGDYFGKEGRFEM 399
Score = 67.8 bits (164), Expect = 2e-12
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 675 FVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDK 734
DA++ + +AL + L G ++++ +F+G++ D
Sbjct: 315 GFHDAILLYVLALHEV----------LRAGYSKKDGGKIIQQTWNRTFEGIA-GQVSIDA 363
Query: 735 DGDGPARYNIIHFKQIRPGVYQWVQVGEYLEGELRLNM 772
+GD +++I + G +G+Y E R M
Sbjct: 364 NGDRYGDFSVIAMTDVEAG--TQEVIGDYFGKEGRFEM 399
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 78.7 bits (192), Expect = 8e-16
Identities = 28/257 (10%), Positives = 72/257 (28%), Gaps = 34/257 (13%)
Query: 84 KSSICIAVKEKLVKDSGVAEERAYDDIVTKLMTKPRARGVIVFGSDQEVAGVMRAVRRLN 143
+ + + V + + + + + + I D ++ A+
Sbjct: 172 YMRVRERLNITVNHQEFVEGDPDHYPKLLRAVRRKGRVIYICSSPDAFRNLMLLALNAGL 231
Query: 144 ATGSFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVKGFDDYFLNLTVENNRRNPW 203
+ + D + + G + + Q + +T NP
Sbjct: 232 TGEDYVFFHLDVFGQSLKSAQGLVPQ-KPWERGDGQDRSARQAFQAAKIITY-KEPDNPE 289
Query: 204 FVDPPLEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSDAVMAFSIA 263
+++ L+ + T + + D ++ + A
Sbjct: 290 YLEF-LKQLKLLADKKFNFTVEDGLKNIIP-----------------ASFHDGLLLYVQA 331
Query: 264 LDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDGPARYNIIH 323
+ L T G + + + SFQG++ + K D++GD +++
Sbjct: 332 VTET----------LAQGGTVTDGENITQRMWNRSFQGVT-GYLKIDRNGDRDTDFSLW- 379
Query: 324 FKQIRPGVYQWVQVGEY 340
+ P + V Y
Sbjct: 380 --DMDPETGAFRVVLNY 394
Score = 66.3 bits (160), Expect = 7e-12
Identities = 24/174 (13%), Positives = 52/174 (29%), Gaps = 34/174 (19%)
Query: 619 DATSPTFFSSTEFWEDHFRCKYPNSSRTPYNSHYSTECTTHEKLSRDTLAFEKQLQFVSD 678
P EF + + T + + D
Sbjct: 281 TYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIP-----------------ASFHD 323
Query: 679 AVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSEDHFKFDKDGDG 738
++ + A+ L T G + + + SFQG++ + K D++GD
Sbjct: 324 GLLLYVQAVTET----------LAQGGTVTDGENITQRMWNRSFQGVT-GYLKIDRNGDR 372
Query: 739 PARYNIIHFKQIRPGVYQWVQVGEY---LEGELRLNMSAIQFKLSHPSPPESVC 789
+++ + P + V Y + + ++ + + L +P P C
Sbjct: 373 DTDFSLW---DMDPETGAFRVVLNYNGTSQELMAVSEHKLYWPLGYPPPDVPKC 423
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 29.1 bits (65), Expect = 0.27
Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 12/50 (24%)
Query: 793 CDIGQAKKYVEGESCCWHC-------FNCSQYQIRLPSDETQCLTCPEGT 835
C G+ CC C +C P +T C C G+
Sbjct: 3 CPQGKYIHPQNNSICCTKCHKGTYLYNDCPG-----PGQDTDCRECESGS 47
>d1kn0a_ d.50.1.3 (A:) The homologous-pairing domain of Rad52
recombinase {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 30.7 bits (69), Expect = 0.47
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 772 MSAIQFKLSHPSPPESVCSLPCDIGQAKKYVEGESC 807
AIQ L PE + S GQ Y+EG
Sbjct: 12 YQAIQKALRQRLGPEYISSRMAGGGQKVCYIEGHRV 47
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo
sapiens) [TaxId: 9606]}
Length = 56
Score = 27.2 bits (60), Expect = 1.6
Identities = 13/50 (26%), Positives = 15/50 (30%), Gaps = 16/50 (32%)
Query: 793 CDIGQAKKYVEGESCCWHC-------FNCSQYQIRLPSDETQCLTCPEGT 835
C + Y G CC C C + T C CP GT
Sbjct: 1 CKEDE---YPVGSECCPKCSPGYRVKEACGELT------GTVCEPCPPGT 41
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor
superfamily member 4, OX40L receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 25.6 bits (56), Expect = 4.4
Identities = 13/52 (25%), Positives = 14/52 (26%), Gaps = 16/52 (30%)
Query: 791 LPCDIGQAKKYVEGESCCWHC-------FNCSQYQIRLPSDETQCLTCPEGT 835
L C Y + CC C CS S T C C G
Sbjct: 1 LHCVGDT---YPSNDRCCHECRPGNGMVSRCS------RSQNTVCRPCGPGF 43
>d1moxa3 g.3.9.1 (A:163-311) EGF receptor Cys-rich domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 149
Score = 27.8 bits (60), Expect = 4.4
Identities = 2/32 (6%), Positives = 5/32 (15%)
Query: 807 CCWHCFNCSQYQIRLPSDETQCLTCPEGTKPD 838
C + + C +
Sbjct: 101 FGATCVKKCPRNYVVTDHGSCVRACGADSYEM 132
>d1n8yc3 g.3.9.1 (C:166-322) Protooncoprotein Her2 extracellular
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 157
Score = 27.5 bits (59), Expect = 4.8
Identities = 5/39 (12%), Positives = 8/39 (20%)
Query: 806 SCCWHCFNCSQYQIRLPSDETQCLTCPEGTKPDLLRQNC 844
+ C Y + L CP +
Sbjct: 104 TFGASCVTTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGT 142
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 28.0 bits (61), Expect = 5.3
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 246 FEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSED 305
FE FV D + ++ + + + G + + R S +
Sbjct: 31 FEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGS 90
Query: 306 HFKFDKDGDGPARYNIIHFKQIRPGVYQWV 335
+ I K RP +
Sbjct: 91 QVASTSEVLKYTL-FQIFSKIDRPEASRIA 119
Score = 28.0 bits (61), Expect = 5.3
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
Query: 669 FEKQLQFVSDAVMAFSIALDHMHADLCQGKVGLCDAMRPTKGPELLKYLRKVSFQGLSED 728
FE FV D + ++ + + + G + + R S +
Sbjct: 31 FEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGS 90
Query: 729 HFKFDKDGDGPARYNIIHFKQIRPGVYQWV 758
+ I K RP +
Sbjct: 91 QVASTSEVLKYTL-FQIFSKIDRPEASRIA 119
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 27.6 bits (60), Expect = 6.6
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 3/107 (2%)
Query: 798 AKKYVEGESCCWHCFNCSQYQIRLPSDETQCLTCPEGTKPDLLRQNC---LEIPAMFIEI 854
K V+ + ++ + + G +P R+ + + A ++
Sbjct: 102 GKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKT 161
Query: 855 TSTWAIGAMALSSTGILMTLLIVGVFIRHNNTPVVKAAGRELSYVLL 901
I +T I + TPV AAGR LS L
Sbjct: 162 NEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLF 208
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus
[TaxId: 274]}
Length = 87
Score = 25.9 bits (57), Expect = 6.7
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 118 PRARGVIVFGSDQEV---AGVMRAVRRLNATGSFSWVGSDGWSARGLVSDGSEAEVE 171
PR +V G Q V A + L +G + + +V++G + +E
Sbjct: 1 PRLV-ALVKGRVQGVGYRAFAQKKALELGLSG---YAENLPDGRVEVVAEGPKEALE 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.421
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,713,144
Number of extensions: 178892
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 24
Length of query: 981
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 887
Effective length of database: 1,116,976
Effective search space: 990757712
Effective search space used: 990757712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)