Query psy16660
Match_columns 594
No_of_seqs 528 out of 2771
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:47:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 4.3E-37 1.5E-41 329.8 30.9 382 99-570 30-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.7E-34 9.3E-39 307.0 41.5 347 101-520 30-412 (438)
3 2gfp_A EMRD, multidrug resista 100.0 9.2E-33 3.1E-37 289.5 17.7 344 101-520 4-356 (375)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.4E-31 1.2E-35 287.8 28.1 358 97-515 13-447 (491)
5 4gc0_A D-xylose-proton symport 100.0 4.8E-30 1.7E-34 278.5 32.5 380 117-578 31-473 (491)
6 2cfq_A Lactose permease; trans 100.0 1.7E-29 5.8E-34 269.4 27.0 380 95-568 5-399 (417)
7 2xut_A Proton/peptide symporte 99.9 6E-26 2E-30 248.6 18.6 360 97-515 12-466 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.5 3.6E-13 1.2E-17 145.6 23.2 175 366-568 13-196 (491)
9 3o7q_A L-fucose-proton symport 99.5 1.2E-12 4.2E-17 138.8 22.3 146 368-514 28-177 (438)
10 1pw4_A Glycerol-3-phosphate tr 99.5 6.3E-13 2.2E-17 141.5 20.0 154 365-520 27-186 (451)
11 2xut_A Proton/peptide symporte 99.5 1.1E-12 3.6E-17 143.1 19.2 176 365-568 11-198 (524)
12 2gfp_A EMRD, multidrug resista 99.4 8.4E-13 2.9E-17 137.4 13.4 150 370-520 4-154 (375)
13 2cfq_A Lactose permease; trans 99.3 5.3E-11 1.8E-15 126.1 16.4 157 120-335 242-405 (417)
14 4gc0_A D-xylose-proton symport 99.1 3.1E-09 1.1E-13 114.4 18.3 115 402-516 55-188 (491)
15 2g9p_A Antimicrobial peptide l 22.0 25 0.00087 19.6 0.5 14 153-166 2-15 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.3e-37 Score=329.76 Aligned_cols=382 Identities=12% Similarity=0.048 Sum_probs=310.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhh
Q psy16660 99 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 178 (594)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~ 178 (594)
+..+.+..++..+..+. ..+.+|.+.+++ .+..+. |++.+++.++..++.+++|+++||+|||++++++.++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 30 FLGIFFGYAAYYLVRKN-FALAMPYLVEQG-FSRGDL-GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHTTSST-TCSSCH-HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHh-ccHhHH-HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 34444455555555555 788999999999 776666 999999999999999999999999999999999998888887
Q ss_pred hh--h----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhcccc
Q psy16660 179 PL--M----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVF 251 (594)
Q Consensus 179 ~~--~----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 251 (594)
++ + +.+++.++++|+++|++ +...+...+++.|++|+++|++++++
T Consensus 107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~--------------------------- 159 (451)
T 1pw4_A 107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------------------------- 159 (451)
T ss_dssp HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHH---------------------------
T ss_pred HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHH---------------------------
Confidence 76 5 66899999999999998 66788889999999999999999999
Q ss_pred chhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHhheec
Q psy16660 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS-LSLVVAVATAVAILDVFFILVAV 330 (594)
Q Consensus 252 ~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~g-w~~~f~~~~~~~ll~~~~~~~~l 330 (594)
.+...++|.++||.+++++.+..| ||++|++.+++.++..++.++.+
T Consensus 160 --------------------------------~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 160 --------------------------------WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp --------------------------------HHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888898 99999999988887777666778
Q ss_pred cCCCchhhccCCCCCCCC-------ccccCCchhh--HhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCCh
Q psy16660 331 PESLPEKVRQASWGGAPI-------SWEQADPFAS--LRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401 (594)
Q Consensus 331 ~e~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 401 (594)
||++++...+.+.+..+. +.+++...++ .+..+++|.++..++..++..........+.|.|+++.+|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 287 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFAL 287 (451)
T ss_dssp CCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCH
T ss_pred cCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 887654322111110000 0000111122 4667789999999999999888888899999999998789999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHhhh--hhHHHHHHHHHHHHHh-hchHhHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVL--GAKHTIIIGLVFEM-LQLMWYGFG--SQMWMMWAAGILASLA-SITYPAI 475 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~--g~~~~l~~~~~~~~-i~~~~~~~~--~~~~~~~~~~~l~g~~-~~~~~~~ 475 (594)
.+.+.+.+...++.+++.++.+++.||+ ++|+.+..+..+.. ++++++.+. .+.+...+..++.|++ +...+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999999999999 99988888776666 666666654 3566777777778887 7777888
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHH-HHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHH
Q psy16660 476 SALVSMHSDADRQGLVQGMVTGMRGL-CNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFG 554 (594)
Q Consensus 476 ~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 554 (594)
.+++.+.+|+++||+++|+.+...++ |..++|.+.|.+.+..|+. ..|.+.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~----------------------------~~~~~~ 419 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD----------------------------GGFMVM 419 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSH----------------------------HHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH----------------------------HHHHHH
Confidence 89999999999999999999999999 9999999999999986654 677777
Q ss_pred HHHHHHHHHHHHhccC
Q psy16660 555 ALLVIAALLVATFIPE 570 (594)
Q Consensus 555 ~~~~~~~~~~~~~~~~ 570 (594)
+++.+++.++.+..++
T Consensus 420 ~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 420 IGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777776666655543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.7e-34 Score=306.96 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..+..+. ..+.+|.+.++++.+..+. |++.+++.++..++.+++|+++||+|||++++++.++.+++.++
T Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 30 LLCSLFFLWAVANNL-NDILLPQFQQAFTLTNFQA-GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHSCCCSHHH-HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333444455555555 7889999999999887776 99999999999999999999999999999999999888887665
Q ss_pred h-----cchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchh
Q psy16660 181 M-----TLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVT 254 (594)
Q Consensus 181 ~-----~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 254 (594)
. +.+++.++++|++.|++ +...+...+++.|++|+++|++++++
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------------------------------ 157 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL------------------------------ 157 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHH------------------------------
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHH------------------------------
Confidence 4 35899999999999998 67778889999999999999999999
Q ss_pred hhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHH-HhcC-------------------------h
Q psy16660 255 FSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLE-KTYS-------------------------L 308 (594)
Q Consensus 255 ~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~-~~~g-------------------------w 308 (594)
.+...++|.++||.+++++. +..+ |
T Consensus 158 -----------------------------~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 208 (438)
T 3o7q_A 158 -----------------------------AQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSV 208 (438)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhH
Confidence 99999999999999999988 5444 9
Q ss_pred HHHHHHHHHHHHHHHHHhhe-eccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHH
Q psy16660 309 SLVVAVATAVAILDVFFILV-AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYS 387 (594)
Q Consensus 309 ~~~f~~~~~~~ll~~~~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (594)
|++|++.+++.++..++.++ ..||++++++++ .++.+...++++.+++|.++...+..++....+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T 3o7q_A 209 QTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD---------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWS 279 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC---------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccc---------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877666665544333 244443221111 12234456778888999999999998888888888889
Q ss_pred HHHHH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16660 388 CLFVY-LKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILAS 466 (594)
Q Consensus 388 ~~~~~-~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 466 (594)
+.|.| +++.+|.++.+.+.......++.+++.++.+++.||+++|+.+..+.++.+++++++.+.++.+..+ ..++.+
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g 358 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI-ALTLCS 358 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHH
Confidence 99999 8888899999999999999999999999999999999999999999999888888887777665544 346667
Q ss_pred Hh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-cc
Q psy16660 467 LA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH-VD 520 (594)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g-~~ 520 (594)
++ +..++...++..+..|++ ++++.++.. ...+|+.++|.+.|.+.|..| +.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~ 412 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIP 412 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSG
T ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchH
Confidence 77 778899999989999866 888888877 778999999999999999987 54
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=9.2e-33 Score=289.48 Aligned_cols=344 Identities=13% Similarity=0.148 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhCCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh
Q psy16660 101 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 180 (594)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~ 180 (594)
.+....++..++.+. ..|.+|.+.++++.+..+. |++.+++.++..++.++.|+++||+|||+++..+.++.+++..+
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~~-g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTI-YIPAIADMARDLNVREGAV-QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHTTSSSTTHHH-HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhhhhHHHHHHcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 445566667777676 7899999999998887766 99999999999999999999999999999999998888887766
Q ss_pred --hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhh
Q psy16660 181 --MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSV 257 (594)
Q Consensus 181 --~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 257 (594)
++.+++.+++.|+++|++ +...+...+++.|++|+++|++++++
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 128 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSL--------------------------------- 128 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHH---------------------------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHH---------------------------------
Confidence 566999999999999998 66778889999999999999999999
Q ss_pred hhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCchh
Q psy16660 258 VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEK 337 (594)
Q Consensus 258 ~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~~~ 337 (594)
.+....+|..+||.+++++.+..+||+.|++.+++.++..+...+.+||+++++
T Consensus 129 --------------------------~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 129 --------------------------LNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred --------------------------HHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999998889999999998888776665666788875443
Q ss_pred hccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q psy16660 338 VRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVS 417 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~ 417 (594)
+++ ++..+++++.+|+|.++...+..++..........+.|.|+++.+|.++.+.+.+.....++.++
T Consensus 183 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T 2gfp_A 183 APR------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFF 250 (375)
T ss_dssp CCC------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccc------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 221 11223455667889999988888888888888888899999888899999999999999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHH-HHHHHH--HHhh--hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHH
Q psy16660 418 AQIILGCLMNVLGAKHTIIIGLVF-EMLQLM--WYGF--GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLV 491 (594)
Q Consensus 418 ~~~~~g~l~dr~g~~~~l~~~~~~-~~i~~~--~~~~--~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~ 491 (594)
+.++.+++.||.+++ +..+..+ ...+.. .... .++.+..++..++.+++ +...+...++..|..| ++||++
T Consensus 251 ~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 251 GAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchH
Confidence 999999999998873 2333322 222222 2222 23566666777788888 7788899999999997 899999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 492 QGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 492 ~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.|+.+...++|..++|.+.|.+.+..++.
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~ 356 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGS 356 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999998876654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.4e-31 Score=287.78 Aligned_cols=358 Identities=11% Similarity=0.073 Sum_probs=264.3
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHHhh------CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcc-cCchhhHHH
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRT------FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLI 169 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr-~Grr~~l~~ 169 (594)
+.++.+....++..+++.. ..+.++.+.++ ++.+..+. |++.+++.++..++.++.|+++|| +|||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYG-MRAILLYYMWFLISTGDLHITRATA-ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 4455666666666666655 45556665544 67776655 999999999999999999999999 899999999
Q ss_pred HHHHhhhhhhh--hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhccccccc--ccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 170 TVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE--RSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 170 ~~~~~~i~~~~--~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
+.++.+++.++ ++.+++.++++|+++|++ +...+...+++.|++|+++ |+.++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------------------- 150 (491)
T 4aps_A 91 GGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI-------------------- 150 (491)
T ss_dssp HHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehH--------------------
Confidence 99888888766 566999999999999998 6678888999999999988 6667777
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
++...++|..+||.+++++.+..|||++|++.++..++..+
T Consensus 151 ---------------------------------------~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 191 (491)
T 4aps_A 151 ---------------------------------------FVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLL 191 (491)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999998877776665
Q ss_pred HhheeccCCCchhhccCCCCCCCCcccc--------------------------------------------------CC
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQ--------------------------------------------------AD 354 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~ 354 (594)
+.++..|+..+++.++.+.+....+.++ ++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (491)
T 4aps_A 192 VYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISS 271 (491)
T ss_dssp HHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhc
Confidence 5444333322211111100000000000 00
Q ss_pred chhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q psy16660 355 PFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHT 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~ 434 (594)
.........+....+.+.+..++.+..+......++.|.++.++.+..+.+.......++.+++.++.+++.||++||+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~ 351 (491)
T 4aps_A 272 VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP 351 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC
Confidence 00000111122234555555666666667777788999988778777778888888899999999999999999998755
Q ss_pred HH-----HHHHHHHHHHHHHhhhh---------hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHH
Q psy16660 435 II-----IGLVFEMLQLMWYGFGS---------QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMR 499 (594)
Q Consensus 435 l~-----~~~~~~~i~~~~~~~~~---------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 499 (594)
.. .+..+.+++++++.... +.+......++.+++ +...+..++++.|..|+++||+++|+.+...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~ 431 (491)
T 4aps_A 352 SSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSS 431 (491)
T ss_dssp -CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44 67777777766655432 556667777888888 7778889999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHH
Q psy16660 500 GLCNGLGPAMFGLIFY 515 (594)
Q Consensus 500 ~lg~~lg~~~~g~l~~ 515 (594)
++|..++|.+.+.+.+
T Consensus 432 ~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 432 SVGSALNAQLVTLYNA 447 (491)
T ss_dssp HHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887754
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=4.8e-30 Score=278.51 Aligned_cols=380 Identities=13% Similarity=0.065 Sum_probs=259.2
Q ss_pred hhhHHHHHHhhCCCc-------hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh---------
Q psy16660 117 TMPIISVLNRTFPDH-------TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--------- 180 (594)
Q Consensus 117 ~~~~~~~~~~~~~~~-------~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--------- 180 (594)
..+.+|.+.++++.. +....|++.+++.++.+++++++|+++||+|||++++++.+++.++.++
T Consensus 31 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~ 110 (491)
T 4gc0_A 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFT 110 (491)
T ss_dssp GGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTS
T ss_pred HHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566677666655321 2334599999999999999999999999999999999998887776554
Q ss_pred -----------hcchHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhc
Q psy16660 181 -----------MTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248 (594)
Q Consensus 181 -----------~~~~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (594)
++.|+++++++|+++|++ ++..+....+++|+.|+++|++..++
T Consensus 111 ~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~------------------------ 166 (491)
T 4gc0_A 111 SINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF------------------------ 166 (491)
T ss_dssp CSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH------------------------
T ss_pred hhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh------------------------
Confidence 356899999999999998 77888999999999999999999998
Q ss_pred cccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHh--------cChHHHHHHHHHHHH
Q psy16660 249 GVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKT--------YSLSLVVAVATAVAI 320 (594)
Q Consensus 249 g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~--------~gw~~~f~~~~~~~l 320 (594)
.+....+|.++++.++..+... .+||..+.+..+..+
T Consensus 167 -----------------------------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (491)
T 4gc0_A 167 -----------------------------------NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL 211 (491)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred -----------------------------------hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence 8888889999888888776542 358888887777666
Q ss_pred HHHHHhheeccCCCchhhccCCCCCCCCccc--------------cC------CchhhHhhhccchhHHHHHHHHHHHHH
Q psy16660 321 LDVFFILVAVPESLPEKVRQASWGGAPISWE--------------QA------DPFASLRKVGKDQTILMLCVTVFLSYL 380 (594)
Q Consensus 321 l~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (594)
+..+ ..+.+||+++....+.+.+++....+ .. +.........+.+..........+..+
T Consensus 212 ~~~~-~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (491)
T 4gc0_A 212 LFLM-LLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQF 290 (491)
T ss_dssp HHHH-HGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHH
T ss_pred hhhh-hhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHH
Confidence 6544 45569999865433322111100000 00 000001112233333333333333322
Q ss_pred hhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhh----hhHH
Q psy16660 381 PEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFG----SQMW 456 (594)
Q Consensus 381 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~----~~~~ 456 (594)
.......++..++.+..+.+...........++..+++.++.+++.||+|||+.++.+.....++++.++.. ...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 370 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 370 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchH
Confidence 222222233334444467787777788888889999999999999999999999999988888777665532 1223
Q ss_pred HHHHHHHHHHHh--hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccc
Q psy16660 457 MMWAAGILASLA--SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLAN 534 (594)
Q Consensus 457 ~~~~~~~l~g~~--~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 534 (594)
...+...++..+ ....+..+.+.+|.+|.+.|+++.|+.+...++++++++.+++.+.+.....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-------------- 436 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-------------- 436 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 333333333322 3445778899999999999999999999999999999999888775532211
Q ss_pred cCCCCCCCCCcCCChhHHHHHHHHHH-HHHHHHhccCcccccCcC
Q psy16660 535 RTNNVNSYPSVIPGPPFVFGALLVIA-ALLVATFIPESIVTRSVG 578 (594)
Q Consensus 535 ~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 578 (594)
...+....|++.+++.++ .++..+++||+|++.-+|
T Consensus 437 --------~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 437 --------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp --------HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred --------hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 001223555555544444 445567889998876443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=1.7e-29 Score=269.40 Aligned_cols=380 Identities=11% Similarity=0.126 Sum_probs=257.7
Q ss_pred cCCchhHHHHHHHHHHHHhhhhhhhHHHHHHhh-CCCchhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHH
Q psy16660 95 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 173 (594)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~ 173 (594)
+++..+.+....++..++++. ..|.+|.+.++ ++.+..+. |++.+++.++..++++++|+++||+|||++++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDT-GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH-HTTTHHHHHHTTTCCCTTTS-HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 455666666666777777777 78999998765 66666655 9999999999999999999999999999999988776
Q ss_pred hhhhhhh-h--cc--hH-HHHHHHHHHHHHH-hHHHHHHHHHhhccccc--ccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 174 TCLPIPL-M--TL--DT-WWFFAMISISGVF-AVTFSVVFAYVADVTEE--HERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 174 ~~i~~~~-~--~~--~~-~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~--~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
.++.... + .. .. ..++..+++.|++ +...+.....+.++.++ ++|+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------- 142 (417)
T 2cfq_A 83 MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGR-------------------- 142 (417)
T ss_dssp TTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHH--------------------
Confidence 6553211 1 11 10 1122334444433 22222222222222221 223333343
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
......+|..++|.+++++.+ .+|++.|++.++..++..+
T Consensus 143 ---------------------------------------~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~ 182 (417)
T 2cfq_A 143 ---------------------------------------ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAV 182 (417)
T ss_dssp ---------------------------------------HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence 666678889999999999887 6899999987766554443
Q ss_pred HhheeccCCCchhhccCCCCCCCCccccCCchhhHhhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCC---Ch
Q psy16660 325 FILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGF---DE 401 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~ 401 (594)
..++..||+++.. ++.+.+ .+.+++...+++++.+++|.++...+..++..........++|.|+.+.++. +.
T Consensus 183 ~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (417)
T 2cfq_A 183 LLFFAKTDAPSSA-TVANAV---GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGT 258 (417)
T ss_dssp HSCSSCCCCSCSS-CSSSSS---SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHT
T ss_pred HHHHcCccccccc-cccccc---ccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 3333233332111 100000 0001112234566777899988777665555545455556678888765542 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHh
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVS 480 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~ 480 (594)
...++......++.+++.++.+++.||+|+|+.+..+..+.+++++++.+.++.+.+.+..++.+++ +...+....+..
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999999999988888888877777766766666666666666 556667788999
Q ss_pred hcCCCccchHHHHH-HHHHHHHHHhHHHHHHHHHHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHH
Q psy16660 481 MHSDADRQGLVQGM-VTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVI 559 (594)
Q Consensus 481 ~~~p~~~~g~~~g~-~~~~~~lg~~lg~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 559 (594)
|..|++.||++++. ++...++|+.++|.+.|.+.+..|+. ..|.+.+++.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~----------------------------~~f~~~~~~~l 390 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ----------------------------GAYLVLGLVAL 390 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH----------------------------HHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH----------------------------HHHHHHHHHHH
Confidence 99999999999999 48888999999999999999987654 67777777777
Q ss_pred HHHHHHHhc
Q psy16660 560 AALLVATFI 568 (594)
Q Consensus 560 ~~~~~~~~~ 568 (594)
++.++.+..
T Consensus 391 ~~~~~~~~~ 399 (417)
T 2cfq_A 391 GFTLISVFT 399 (417)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 666655443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=6e-26 Score=248.59 Aligned_cols=360 Identities=11% Similarity=0.037 Sum_probs=235.7
Q ss_pred CchhHHHHHHHHHHHHhhhhhhhHHHHHH-hhCC------CchhHHHHHHHHHHHHHHHHHhhHhhhhhccc-CchhhHH
Q psy16660 97 PSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFP------DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLL 168 (594)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~-Grr~~l~ 168 (594)
+.++.+.+..++..+++.. ..+.++.+. ++++ .+..+. |++.+++.++..++.++.|+++||+ |||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYG-MRNILTPFLMTALLLSIPEELRGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHH-HHHHHHHHHHHSCSSCCSSSTTTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3455566667777777665 566777665 4566 555555 9999999999999999999999999 9999999
Q ss_pred HHHHHhhhhhhh--hcc-hHHHHHHHHHHHHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHH
Q psy16660 169 ITVFVTCLPIPL--MTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAM 244 (594)
Q Consensus 169 ~~~~~~~i~~~~--~~~-~~~~l~~~r~l~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 244 (594)
++.++.+++.++ ++. +++.+++.|++.|++ +...+...+++.|++|+++|+++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------------------- 149 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKA-------------------- 149 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHH--------------------
Confidence 998888877666 566 899999999999998 66788889999999999999765444
Q ss_pred hhhccccchhhhhhhhhhccchhhhhhhhhhcccccccchhHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy16660 245 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVF 324 (594)
Q Consensus 245 ~~~~g~~~~~~~~~~a~i~d~t~~~~r~~~~g~~~~~~~~~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~ 324 (594)
++. .....++|..+||.+++++.+..||+++|++.+++.++..+
T Consensus 150 ------------------------------~~~------~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 150 ------------------------------FDM------FYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp ------------------------------HHH------HHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHH------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 111 77788999999999999999889999999999887777655
Q ss_pred HhheeccCCCchhhccCCCCCC-C-----CccccCC-ch-----------------------------------------
Q psy16660 325 FILVAVPESLPEKVRQASWGGA-P-----ISWEQAD-PF----------------------------------------- 356 (594)
Q Consensus 325 ~~~~~l~e~~~~~~~~~~~~~~-~-----~~~~~~~-~~----------------------------------------- 356 (594)
+.++..|+.+++++++.+..+. + .+.+..+ ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (524)
T 2xut_A 194 FFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG 273 (524)
T ss_dssp HHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccc
Confidence 5444333221111110000000 0 0000000 00
Q ss_pred -hhH---h---------hhccchhHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHH
Q psy16660 357 -ASL---R---------KVGKDQTILMLC---VTVFLSYLPEAGQYSCLFVYLKLVMGFDE-VHVAVFIAVIGTLSVSAQ 419 (594)
Q Consensus 357 -~~~---~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-~~~g~~~~~~~i~~~~~~ 419 (594)
.++ . ...+.+..+... ....+.+.........++.+..+ .+.+. ...+.+.....++.++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 352 (524)
T 2xut_A 274 AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND-MVKPQWFEPAMMQALNPLLVMLLI 352 (524)
T ss_dssp TGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH-SCCCSSSCHHHHHTTSGGGHHHHG
T ss_pred cchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh-cCCCeeecHHHHHHHHHHHHHHhH
Confidence 000 0 001112222111 11112222222222333344333 23221 235555555555555665
Q ss_pred HHHHHHH----Hhhch----HHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHh-hchHhHHHHHHhh
Q psy16660 420 IILGCLM----NVLGA----KHTIIIGLVFEMLQLMWYGFG---------SQMWMMWAAGILASLA-SITYPAISALVSM 481 (594)
Q Consensus 420 ~~~g~l~----dr~g~----~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~ 481 (594)
.+.+++. +|.++ ++.+..+.++.+++++++... .+.+...+..++.+++ +...+..++++.+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 432 (524)
T 2xut_A 353 PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432 (524)
T ss_dssp GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 44432 356677777788877776653 2556666777888888 7888999999999
Q ss_pred cCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy16660 482 HSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFY 515 (594)
Q Consensus 482 ~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~ 515 (594)
..|+++||+++|+.+...++|+.++|.+.|.+.+
T Consensus 433 ~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred hCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998876
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.54 E-value=3.6e-13 Score=145.55 Aligned_cols=175 Identities=18% Similarity=0.190 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-----hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHH
Q psy16660 366 QTILMLCVTVFLSYLPEAGQYSCLFVYLKLV-----MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNV-LGAKHTIIIGL 439 (594)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr-~g~~~~l~~~~ 439 (594)
+.++.++...++..+.+.....+++.|+++. +|.+..+.+++.+...++..++.++.|++.|| +|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4567777777777788888888999999998 99999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCcc--chHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 440 VFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADR--QGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 440 ~~~~i~~~~~~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
++.+++.+++.+.++.+.++++.++.|++ +...+...+++.|.+|+++ |+++.+..+...++|..++|.+.+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 8889999999999999988 77888889999999999999999999998
Q ss_pred hhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 517 FHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 517 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
.|++ ..|.+.++..+++.+..+..
T Consensus 173 ~g~~----------------------------~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYH----------------------------VAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHH----------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH----------------------------HHHHHHHHHHHHHHHHHHHh
Confidence 7765 67777766666665555433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.50 E-value=1.2e-12 Score=138.82 Aligned_cols=146 Identities=12% Similarity=0.087 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q psy16660 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447 (594)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~ 447 (594)
+..+++..++..+.........|. +++.+|.+..+.|++.+...++.+++.++.|++.||+|||+.+..+.++.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 334444444444444444445555 4556899999999999999999999999999999999999999999999999998
Q ss_pred HH---hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy16660 448 WY---GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514 (594)
Q Consensus 448 ~~---~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~ 514 (594)
+. ...++.+.+++..++.|++ +...+...+++.|..|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 107 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 7788999999999999999 8889999999999999999999999999999999999999999998
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.50 E-value=6.3e-13 Score=141.52 Aligned_cols=154 Identities=14% Similarity=0.184 Sum_probs=134.4
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML 444 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i 444 (594)
.+.+....+..++...........+|.+.++ + .+..+.|++.+...++..++.++.|++.||+|||+.+..+.++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 3445555566666666655666667766655 5 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh----hhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhh-
Q psy16660 445 QLMWYGF----GSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH- 518 (594)
Q Consensus 445 ~~~~~~~----~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g- 518 (594)
+.+++.+ .++.+.+++..++.|++ +...+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..|
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 184 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND 184 (451)
T ss_dssp HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988 88888899999999999 88899999999999999999999999999999999999999999988776
Q ss_pred cc
Q psy16660 519 VD 520 (594)
Q Consensus 519 ~~ 520 (594)
++
T Consensus 185 w~ 186 (451)
T 1pw4_A 185 WH 186 (451)
T ss_dssp ST
T ss_pred HH
Confidence 55
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.47 E-value=1.1e-12 Score=143.14 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=151.2
Q ss_pred chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHH
Q psy16660 365 DQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMG------FDEVHVAVFIAVIGTLSVSAQIILGCLMNVL-GAKHTIII 437 (594)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~-g~~~~l~~ 437 (594)
++.++.+.+..++..+.......+++.|+++.+| +++.+.|++.+...++.+++.++.|++.||+ |+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4556667777777778888888899999988889 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHH---HHHHHHHHHhHHHHHHHH
Q psy16660 438 GLVFEMLQLMWYGFGS-QMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGM---VTGMRGLCNGLGPAMFGL 512 (594)
Q Consensus 438 ~~~~~~i~~~~~~~~~-~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~lg~~lg~~~~g~ 512 (594)
+.++.+++.+++.+.+ +.+.+++..++.|++ +...+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888 888888889999999 88899999999999999999877666 889999999999999999
Q ss_pred HHHHhhccCCCCCCCCCCcccccCCCCCCCCCcCCChhHHHHHHHHHHHHHHHHhc
Q psy16660 513 IFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFI 568 (594)
Q Consensus 513 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 568 (594)
+.+..|++ ..|.+.+++.+++.+..+..
T Consensus 171 l~~~~g~~----------------------------~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 171 LLKNFGAA----------------------------VAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp HHHTSCHH----------------------------HHHHHHHHHHHHHHHHHHSS
T ss_pred HhccccHH----------------------------HHHHHHHHHHHHHHHHHHHh
Confidence 98876654 67777776666665555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.42 E-value=8.4e-13 Score=137.39 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy16660 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWY 449 (594)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~ 449 (594)
.++...++...........+|.+.+ .+|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+.+++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMAR-DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 3445555555555556666666554 479999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q psy16660 450 GFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVD 520 (594)
Q Consensus 450 ~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~~g~~ 520 (594)
.+.++.+.+++..++.|++ +...+...+++.|..|+++|+++++..+....+|..++|.+.+.+.+..|++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 154 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWR 154 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHH
Confidence 9999999999999999999 8889999999999999999999999999999999999999999998877755
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.27 E-value=5.3e-11 Score=126.11 Aligned_cols=157 Identities=12% Similarity=0.072 Sum_probs=120.2
Q ss_pred HHHHHHhhC-CCc--hhHHHHHHHHHHHHHHHHHhhHhhhhhcccCchhhHHHHHHHhhhhhhh--hcchHHHHHHHHHH
Q psy16660 120 IISVLNRTF-PDH--TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISI 194 (594)
Q Consensus 120 ~~~~~~~~~-~~~--~~~~~g~~~s~~~l~~~l~~~~~G~lsDr~Grr~~l~~~~~~~~i~~~~--~~~~~~~l~~~r~l 194 (594)
.+|.+..+. +.. +....|+..++..++..++.++.|+++||+|||+++..+.++.+++... +..+.+.+++..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 321 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 356555443 221 2334488888888899999999999999999999988887777666544 34467777777777
Q ss_pred HHHH-hHHHHHHHHHhhcccccccccchhchhHHHHHHHHhhhhhhhHHHHhhhccccchhhhhhhhhhccchhhhhhhh
Q psy16660 195 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273 (594)
Q Consensus 195 ~Gi~-~~~~~~~~a~i~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~i~d~t~~~~r~~ 273 (594)
.+++ ....+...+++.|.+|++.|+.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~------------------------------------------------- 352 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLV------------------------------------------------- 352 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-------------------------------------------------
Confidence 7776 44556667899999999999888776
Q ss_pred hhcccccccch-hHHHhhHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhheeccCCCc
Q psy16660 274 AYGLSFSFSQV-SATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLP 335 (594)
Q Consensus 274 ~~g~~~~~~~~-~~~~~~g~~igp~l~~~l~~~~gw~~~f~~~~~~~ll~~~~~~~~l~e~~~ 335 (594)
. +....+|..+||.++|++.+..|++..|.+.+++.+++.++.++..||+++
T Consensus 353 ----------~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 353 ----------CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ----------HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ----------HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 5 667789999999999999988899999999888888877766666666443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=3.1e-09 Score=114.42 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHH
Q psy16660 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYG------------------FGSQMWMMWAAGI 463 (594)
Q Consensus 402 ~~~g~~~~~~~i~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~i~~~~~~------------------~~~~~~~~~~~~~ 463 (594)
.+.|++.+...++.++|.++.|+++||+|||+.+.++.++..++.++.+ .+++.+.++++-+
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999888776 3678889999999
Q ss_pred HHHHh-hchHhHHHHHHhhcCCCccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy16660 464 LASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYM 516 (594)
Q Consensus 464 l~g~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~lg~~~~g~l~~~ 516 (594)
+.|++ +...+....+++|..|+++|++..++.+....+|..+++.+...+...
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 99999 889999999999999999999999999999999998888877766544
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=21.99 E-value=25 Score=19.65 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.2
Q ss_pred HhhhhhcccCchhh
Q psy16660 153 LIGALSDLWGRKLF 166 (594)
Q Consensus 153 ~~G~lsDr~Grr~~ 166 (594)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888899999865
Done!