RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16660
(594 letters)
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 69.4 bits (170), Expect = 9e-13
Identities = 76/410 (18%), Positives = 129/410 (31%), Gaps = 70/410 (17%)
Query: 103 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG 162
+ FL LL + L + GL++ L+ PL G LSD +G
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDL-GISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 163 RKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAY 222
R+ LLI + +
Sbjct: 61 RRRVLLIGLLLFA----------------------------------------------- 73
Query: 223 GLKFIALKIILMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLSFSF 281
+ L ++L W + + G+ F A +AD ER A GL
Sbjct: 74 ----LGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGL---- 125
Query: 282 SQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQA 341
+SA F P LG L + + +A+L + +P PE R
Sbjct: 126 --LSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPK 183
Query: 342 SWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDE 401
AP A V + + L + + V+G
Sbjct: 184 PAEEAPAPLVPAWKLLLRDPV-------LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA 236
Query: 402 VHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEML---QLMWYGFGSQMWMM 458
+ + + + G L +++LG L + LG + +++ L+ +L L +
Sbjct: 237 LLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWL 296
Query: 459 WAAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGP 507
A +L + +PA++ALVS + + +G G+ L LGP
Sbjct: 297 LVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
Score = 43.6 bits (103), Expect = 2e-04
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 371 LCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLG 430
L + FL+ L + L +YL +G + + + AQ + G L + G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 431 AKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDADRQG 489
+ ++IGL+ L L+ F S +W++ +L L +PA +AL++ + +G
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 490 LVQGMVTGMRGLCNGLGPAMFGLIFYMF 517
G+++ GL LGP + GL+ +F
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLF 148
Score = 38.2 bits (89), Expect = 0.009
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 161
L+ + L FA+ L + + L+ GL++G+ G L + L+G LSD
Sbjct: 207 LLLALLLFGFAFFALLTYLPLYQEVL--GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264
Query: 162 GRK------LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 215
GR+ L LLI + + L W A++ + + F + A V+D+ +
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324
Query: 216 HERSLAYGL 224
ER A GL
Sbjct: 325 EERGTASGL 333
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 58.5 bits (142), Expect = 4e-09
Identities = 70/420 (16%), Positives = 132/420 (31%), Gaps = 97/420 (23%)
Query: 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 161
+ FL GLL+ + + + GLI+ L + L G LSD +
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 162 GRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLA 221
GR+ LL+ + + L L+ +
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSL---------------------------------- 87
Query: 222 YGLKFIALKIILMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLSFS 280
W + G+ + A +A+ ER A GL +
Sbjct: 88 -----------------WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSA 130
Query: 281 FSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ 340
+ A + P LG L ++ + + + +L +L +
Sbjct: 131 GFGLGA------LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR--------- 175
Query: 341 ASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFD 400
+L+L + FL G + L +YL+ V+G
Sbjct: 176 --------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLS 209
Query: 401 EVHVAVFIAVIGTLSVSAQIILGCLMNVLGAK-HTIIIGLVFEMLQLMWYGFGSQMWMMW 459
+ +++ G + ++ G L + LG + ++IGL+ L L+ + ++
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 460 AAGILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518
A +L +PA+ L S + + +G G+ L LGP + GL+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Score = 39.6 bits (93), Expect = 0.003
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 2/151 (1%)
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN 427
+L+L + FLS L L + + +G + ++ ++ G L +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59
Query: 428 VLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA-SITYPAISALVSMHSDAD 486
G + +++GL+ L + F S +W++ L L YPA +AL++
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 487 RQGLVQGMVTGMRGLCNGLGPAMFGLIFYMF 517
+G G+ + GL LGP + GL+
Sbjct: 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
>gnl|CDD|182213 PRK10054, PRK10054, putative transporter; Provisional.
Length = 395
Score = 42.4 bits (100), Expect = 4e-04
Identities = 63/288 (21%), Positives = 121/288 (42%), Gaps = 28/288 (9%)
Query: 192 ISISGVFAVTFSVVFAYVADVTEEHERSL----AYGLKFIALKIILMTLDTWWFFAMISI 247
++I+ V FS+ F +AD ++ L A+ FIA+ ++ FFA+I+
Sbjct: 49 MTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINC 108
Query: 248 SGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS 307
+ ++V +V+ A+ AD ++ + L+++ + T P LG L S
Sbjct: 109 A--YSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG------PPLGTLL-VMQS 159
Query: 308 LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQT 367
++L +A + + FI + V S A W P L+ D+
Sbjct: 160 INLPFWLAAICSAFPLVFIQIWVQRSEK-----AIATETGSVW---SPSVLLQ----DKA 207
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVM--GFDEVHVAVFIAVIGTLSVSAQIILGCL 425
+L + FL+ SC+ Y+ +V F E VAV + V + VS Q +G
Sbjct: 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRR 267
Query: 426 MNVLGAKHTIIIGLVFEMLQLMWYGF-GSQMWMMWAAGILASLASITY 472
+N + + G + ++ L+ + F G+ + + + + ++ I Y
Sbjct: 268 LNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIY 315
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 40.3 bits (95), Expect = 0.002
Identities = 61/381 (16%), Positives = 117/381 (30%), Gaps = 51/381 (13%)
Query: 191 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMIS--IS 248
+I+ + + + A + E R L L + +L L + +++ ++
Sbjct: 53 LITAYALGVALGAPLLALLTGRLERR-RLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111
Query: 249 GV-FAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYS 307
G+ V +S+ A A + +R A L V + V LG +L + +
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALAL------VFTGLTLATVLGVPLGTFLGQLFG 165
Query: 308 LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQT 367
+A+L + + +P S P +L ++ +
Sbjct: 166 WRATFLAIAVLALLALLLLWKLLPPSEISG-------------SLPGPLRTLLRLLRRPG 212
Query: 368 ILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMN 427
+L+ + FL Y+ + +L+ V GF V++ + G ++ G L +
Sbjct: 213 VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272
Query: 428 VLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADR 487
+ I L+ + L G+ + A L A D
Sbjct: 273 RGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDA 332
Query: 488 QGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGPDVGPGTLANRTNNVNSYPSVIP 547
L + L LG A+ GL+
Sbjct: 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGY---------------------------- 364
Query: 548 GPPFVFGALLVIAALLVATFI 568
GA L++ ALL+A
Sbjct: 365 AATGWVGAALLLLALLLALLS 385
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 39.9 bits (94), Expect = 0.003
Identities = 58/308 (18%), Positives = 113/308 (36%), Gaps = 23/308 (7%)
Query: 219 SLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVF-AYVADVTEE-HERSLAYG 276
+++ L F + MT + F + G+ ++ + + + +T + ER+
Sbjct: 81 AISLVLLFATPFGLSMTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLAS 140
Query: 277 LSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336
+ + A V +P L A L A +AIL V L+ E
Sbjct: 141 YRRIGATIGGLLVA--VIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLICFA-GTKE 197
Query: 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV 396
+V +S + + K++ +L+L + L+ L A + L Y V
Sbjct: 198 RVSVPPEQKEKVSL-----RDMFKALFKNRPLLILLLLYLLNALAMAVRNGLLLYYFTYV 252
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456
+G +V + + ++ + L G K T ++G++ + L+ F
Sbjct: 253 LGNAG-LFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF-LPPG 310
Query: 457 MMWAAGILASLASITYPAISALV-SMHSDA----------DRQGLVQGMVTGMRGLCNGL 505
+W +L LA I + L +M +D R+G+ + + L L
Sbjct: 311 SLWLFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGAL 370
Query: 506 GPAMFGLI 513
G A+ GL+
Sbjct: 371 GGAIVGLL 378
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 37.6 bits (88), Expect = 0.004
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISI 194
GL++ + +PL G L+D +GRK LL+ +F+ L + L + +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 195 SGVFAVTFSV-VFAYVADVTEEHERSLAYGL 224
G A V A +AD+ ER +A GL
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGL 91
Score = 37.6 bits (88), Expect = 0.005
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)
Query: 239 WWFFAMISISGVFAVTFSV-VFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPA 297
+ G A V A +AD+ ER +A GL +SA A + P
Sbjct: 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGL------MSAGIALGPLLGPP 105
Query: 298 LGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPES 333
LG L + +A+ + +PE+
Sbjct: 106 LGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 36.8 bits (86), Expect = 0.027
Identities = 66/399 (16%), Positives = 143/399 (35%), Gaps = 68/399 (17%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSD----LWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMI 192
G I + + ++ P++G + D WGR ++ IP ++
Sbjct: 51 GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP-----WLLWGAIPFAI-----VAVLL 100
Query: 193 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFA 252
I+ F++T +++A V +L+ L + +++I
Sbjct: 101 FITPDFSMTGKLIYALVT--------------------YMLLGL----GYTLVNIPYG-- 134
Query: 253 VTFSVVFAYVADVTEEH-ERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLV 311
A ++T++ ER+ F+ + +++F P + + +L
Sbjct: 135 -------ALGPEITQDPQERASLTSWRMVFASL-GGLLVAVLFPPLVKLFGGGDKALGYQ 186
Query: 312 VAVATAVAILDVFFILV--AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTIL 369
I + + V E + E + G + S + K++ +L
Sbjct: 187 GTALVLGVIGVILLLFCFFNVKERVVETQPTKT--GVKLKL-----KDSFLLIFKNRPLL 239
Query: 370 MLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL 429
+L + L ++ + S + Y+ V+G E+ + + G + I+ L+
Sbjct: 240 LLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF 299
Query: 430 GAKHTIIIGLVFEMLQ--LMWYGFGSQMWMMWAAGILASL-ASITYPAISALVS------ 480
G K +IGL+ + L+++ + ++ A I+A + I P A+V+
Sbjct: 300 GKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG 359
Query: 481 -MHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518
+ R+G+V +T R L L + G I
Sbjct: 360 EWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 35.7 bits (83), Expect = 0.059
Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 27/163 (16%)
Query: 114 GLLTMPIISVLNRTFPDHTFLMNG----LIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI 169
T +I+ T+ T ++ L++ + L F++ PL GALSD GR+ L+I
Sbjct: 231 TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII 290
Query: 170 -TVFVTCLPIPLMTL-----DTWWFFAMISI-SGVFAVTFSVVFAYVADVTEEHER---- 218
TV L +PL+ FF ++ + + + + +++ ++ R
Sbjct: 291 FTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYTGA 350
Query: 219 SLAYGL---------KFIALKIILMTLDT---WWFFAMISISG 249
SLAY L +IA ++ MT D ++ A +++ G
Sbjct: 351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIG 393
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 34.6 bits (80), Expect = 0.15
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSDLWGRK-----LFLLITVFVTCLPIPLMTLDTWW---- 187
G I G L L AP++G ++D G + F I + T L +
Sbjct: 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLL 120
Query: 188 FFAMISISGVFAVTF 202
F + SI F+ F
Sbjct: 121 FLILASIGFEFSNVF 135
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 33.8 bits (78), Expect = 0.25
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 148 FLSAPLIGALSDLWGRKLFLLITVFVTCLP--IPLMTLDTWWFFAMISISGVFAVTFSVV 205
L + + G LSD +GRK LL++ VT + + + + F + G+ V
Sbjct: 141 LLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 33.4 bits (77), Expect = 0.31
Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 35/241 (14%)
Query: 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 161
A V F+ + + L + I S + L+ + + + L G L+D +
Sbjct: 22 AFDVGFMVWTLFSPLGVFIKSDFGLS-EGQKGLLVAIPILVGALLRLP----YGFLTDRF 76
Query: 162 GRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISISGVFA----VTFSVVFAYVADVTEEH 216
G + + ++++ + +P + T+ + + G+ +F+V + +
Sbjct: 77 GGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKE 136
Query: 217 ERSLAYGL-----------KFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 265
++ LA G+ + +A + + W A+ + + + DV
Sbjct: 137 KQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV 196
Query: 266 TEEHERSLAYGLSFSFSQV-------------SATFAASMVFSPALGAYLEKTYSLSLVV 312
EH S+ L V ATF + FS L YL + LS V
Sbjct: 197 P-EHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT 255
Query: 313 A 313
A
Sbjct: 256 A 256
>gnl|CDD|110325 pfam01312, Bac_export_2, FlhB HrpN YscU SpaS Family. This family
includes the following members: FlhB, HrpN, YscU, SpaS,
HrcU SsaU and YopU. All of these proteins export
peptides using the type III secretion system. The
peptides exported are quite diverse.
Length = 343
Score = 32.6 bits (75), Expect = 0.57
Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 12/178 (6%)
Query: 252 AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLV 311
A + AY+ + R L L + + F+ S+ +L L T L L
Sbjct: 32 AASLLAGSAYLFLLGSVFARRLIALLLLTLILIPLPFSLSVTDLFSLVVLLLLTVLLLLS 91
Query: 312 VAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILML 371
+ VA V + + V S E ++ + + +P L+++ ++++ L
Sbjct: 92 LFVALLVGLA-SNLLQVGFLFS-TEAIK--------PDFSKINPIKGLKRIFSARSLVEL 141
Query: 372 CVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVL 429
++ Y L L ++ I ++ TL +++L L+ +L
Sbjct: 142 LKSILKVVAVGLIFYFFLKNDLGTIVRLPGCSPMGIIVIVMTLLK--KLLLVVLLFLL 197
>gnl|CDD|143653 cd07912, Tweety_N, N-terminal domain of the protein encoded by the
Drosophila tweety gene and related proteins, a family of
chloride ion channels. The protein product of the
Drosophila tweety (tty) gene is thought to form a
trans-membrane protein with five membrane-spanning
regions and a cytoplasmic C-terminus. This N-terminal
domain contains the putative transmembrane spanning
regions. Tweety has been suggested as a candidate for a
large conductance chloride channel, both in vertebrate
and insect cells. Three human homologs have been
identified and designated TTYH1-3. TTYH2 has been
associated with the progression of cancer, and
Drosophila melanogaster tweety has been assumed to play
a role in development. TTYH2, and TTYH3 bind to and are
ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase,
which most likely plays a role in controlling the
cellular levels of tweety family proteins.
Length = 418
Score = 31.9 bits (73), Expect = 1.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 277 LSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV 328
L+F+F +V++TF P Y + SL ++ ++ A IL + F+LV
Sbjct: 17 LNFTFHRVNSTFN------PEDEIYQQ---SLLILASIPAACLILSLLFLLV 59
>gnl|CDD|163518 TIGR03806, chp_HNE_0200, conserved hypothetical protein, HNE_0200
family. The model TIGR03805 describes an
uncharacterized protein family that contains repeats
associated with the formation of a right-handed helical
stack of parallel beta strands, homologous to those
found in a number of carbohydrate-binding proteins and
sugar hydrolases. This model describes another
uncharacterized protein family, found in the same
species as TIGR03805 member proteins, usually as the
adjacent gene or in a fusion protein. An example is
HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes
two members of this family are with a single member of
TIGR03805. The function is unknown [Hypothetical
proteins, Conserved].
Length = 317
Score = 31.6 bits (72), Expect = 1.2
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 285 SATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILD--VFFILVAVPESLPEKVRQAS 342
SAT+ A V +G L KT++L + T +++ + +R+A
Sbjct: 51 SATYNAEGVLDFPVGTVLVKTFALPSDLRGPTNGRLIETRLL-------------IRRAQ 97
Query: 343 -WGGAPISWEQADPFASLRKVGKD 365
W P W +A A+L GK
Sbjct: 98 GWAALPYVWNEAQTDATLANAGKV 121
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 30.8 bits (70), Expect = 2.2
Identities = 25/149 (16%), Positives = 59/149 (39%), Gaps = 14/149 (9%)
Query: 191 MISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTL---------DTWWF 241
M S+ G+ ++ ++D+ +SL + K + ++++L +
Sbjct: 256 MASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAA 315
Query: 242 FAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAY 301
A++++ ++ +A ++D + L GL S + +V +GA
Sbjct: 316 LALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNL-----GGIVGPIVIGAI 370
Query: 302 LEKTYSLSLVVAVATAVAILDVFFILVAV 330
T S + + V A+A++ L+ V
Sbjct: 371 AATTGSFAGALMVVAALALIGALSYLLLV 399
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 30.8 bits (70), Expect = 2.3
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 240 WFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLS---------FSFSQVSATFAA 290
++ ++ I + A+ F + F + L + Q+ T A
Sbjct: 779 FWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAV 838
Query: 291 SMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFF 325
P L + L L L + V + +L +F
Sbjct: 839 RSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFL 873
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 30.7 bits (70), Expect = 2.8
Identities = 80/385 (20%), Positives = 132/385 (34%), Gaps = 66/385 (17%)
Query: 141 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVF----------VTCLPIPLMTLDTWWFFA 190
I GFL L + A +DL G K+ + T+ +T + L L F
Sbjct: 7 KIIGFLPLLLTQFLNAFNDL-GHKILIQNTLIKAYDGSEQVILTAIVNALFLLP---FLL 62
Query: 191 MISISGVFAVTFS--VVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISIS 248
+ S +G A FS V V GL + + + W FA+ +
Sbjct: 63 LSSPAGFLADKFSKNRVIRIVK--------LFEVGLTLLIVLAYYLGW-FWLAFAVTFLL 113
Query: 249 GVFAVTFS-VVFAYVADVTEEHERSLAYGLSFSFSQVS---ATFAASMVFSPALGAYLEK 304
G + +S + + ++ + S A GL +F+ V+ T S +F G +
Sbjct: 114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSE 173
Query: 305 T-YSLSLVVAVATAVAILDVFFI--LVAVPESLPEKVRQASWGGAPISWEQADPFASLRK 361
++ V AVA+L + F L VP + PE ++ L +
Sbjct: 174 ILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF----------DKKKYLFPKLLWR 223
Query: 362 VGK---DQTILMLCVTVFLSYLPEAGQY--SCLFVYLKLVMGFDEVHVA-VFIAVIGTLS 415
K +L L + + LSY Q + Y K V+G D +A
Sbjct: 224 NLKLLRSDRVLWLAI-IGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAI-- 280
Query: 416 VSAQIILGCLMNVLGAKHTIIIGLV---------FEMLQLMWYGFGSQMWMMWAAGILAS 466
I +G L+ + I +GLV L S + + + G A
Sbjct: 281 ---GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAG 337
Query: 467 LASITYPAISALVSMHSDADRQGLV 491
L + ++AL+ + G V
Sbjct: 338 LFIV---PLNALIQFRAPEKELGKV 359
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 30.3 bits (69), Expect = 2.9
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 139 IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF---VTCLPIPLMTLDTWWFFAMISIS 195
+ I + L L +GRK+ + + L + +I ++
Sbjct: 262 MGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILA 321
Query: 196 GVF-AVTFSVVFAYVADVTE 214
G +V+A VAD +
Sbjct: 322 GFGQNFVTGLVWALVADTVD 341
>gnl|CDD|233408 TIGR01427, PTS_IIC_fructo, PTS system, fructose subfamily, IIC
component. This model represents the IIC component, or
IIC region of a IIABC or IIBC polypeptide of a
phosphotransferase system for carbohydrate transport.
Members of this family belong to the fructose-specific
subfamily of the broader family (pfam02378) of PTS IIC
proteins. Members should be found as part of the same
chain or in the same operon as fructose family IIA
(TIGR00848) and IIB (TIGR00829) protein regions. A
number of bacterial species have members in two
different branches of this subfamily, suggesting some
diversity in substrate specificity of its members.
Length = 346
Score = 30.1 bits (68), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 473 PAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIF 514
P ++ ++ +S ADR GL GM+ G+ + N G I
Sbjct: 76 PILAGYIA-YSIADRPGLAPGMIAGL--IANNFNSGFLGGII 114
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 30.3 bits (68), Expect = 3.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 134 LMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFVTCLPIPLMTLDTWWFFAMI 192
++G+I + G + LSAP +G L D G K+ + +F L IP+ + T ++
Sbjct: 258 FISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317
Score = 29.5 bits (66), Expect = 5.0
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 134 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAM 191
+ +GL+ I S +++P G L+D GRK+ LL + + + LM L + W F +
Sbjct: 54 MWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLIL 113
Query: 192 ISISGVFAVTFSVVFAYVADVTEEHERSLAYG 223
++ G+ A +A ++ A G
Sbjct: 114 RALLGLLGGFVPNANALIATQVPRNKSGWALG 145
>gnl|CDD|240437 PTZ00487, PTZ00487, ceramidase; Provisional.
Length = 715
Score = 29.5 bits (66), Expect = 6.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 268 EHERSLAYGLSFSFSQVSATF---------AASMVFSP-ALGAYLEKTYSLSLVVAVATA 317
E+ L GLS ++S ATF AS VF P LGAY ++ L+ +
Sbjct: 504 ENPIVLIAGLSNTYSGYIATFEEFQVQRYEGASTVFGPHTLGAYQQEFDKLAQSIVDGQP 563
Query: 318 V 318
+
Sbjct: 564 I 564
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 28.8 bits (65), Expect = 7.6
Identities = 45/248 (18%), Positives = 88/248 (35%), Gaps = 17/248 (6%)
Query: 232 ILMTLDTWWFFAMISISGVFAVTFSVVF-AYVADVTEEHERSLAYGLSFSFSQVSATFAA 290
+L L+ W + + I + F+ + A + D+ E + + A LS A +
Sbjct: 86 LLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLS------QAVRSL 139
Query: 291 SMVFSPALGAYLEKTYSLSLVVAV-ATAVAILDVFFILVAVPESLPEKVRQASWGGAPIS 349
+ P +G + T + + V A AI + + V +PE +++ S
Sbjct: 140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVL--- 196
Query: 350 WEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVY-LKLVMGFDEVHVAVFI 408
D ++ V K+ + L + L L A LF Y +G H +
Sbjct: 197 ---RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVL 253
Query: 409 AVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLA 468
A G ++ ++LG L + + L ++ G + ++ L
Sbjct: 254 AAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLV--LWFAI 311
Query: 469 SITYPAIS 476
+ Y I+
Sbjct: 312 GVGYGPIN 319
>gnl|CDD|235616 PRK05813, PRK05813, single-stranded DNA-binding protein;
Provisional.
Length = 219
Score = 28.4 bits (64), Expect = 8.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 509 MFGLIFYMFHVD---LSDGPDVGPGTLANR 535
M+G FY F ++ LSD D+ P T++ R
Sbjct: 27 MYGEGFYNFKLEVPRLSDSKDILPVTVSER 56
>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and
metabolism].
Length = 395
Score = 28.8 bits (65), Expect = 9.2
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 414 LSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWM-----MWAAGILASLA 468
L AQ+ L+ +L + LV L LM G + + A +L
Sbjct: 251 LMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQ 310
Query: 469 SITYPAISALVSMHS-DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFH 518
+P L+ + S DA + GM G+ L GP +FG +
Sbjct: 311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.419
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,318,948
Number of extensions: 3106177
Number of successful extensions: 5228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5056
Number of HSP's successfully gapped: 317
Length of query: 594
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 492
Effective length of database: 6,413,494
Effective search space: 3155439048
Effective search space used: 3155439048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.6 bits)