RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16660
(594 letters)
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 57.2 bits (138), Expect = 6e-09
Identities = 46/414 (11%), Positives = 96/414 (23%), Gaps = 63/414 (15%)
Query: 107 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF 166
F FF G P + + G+I S L PL G LSD G + +
Sbjct: 17 FFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY 75
Query: 167 LLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLKF 226
LL I V F+ F ++
Sbjct: 76 LLW------------------------IITGMLVMFAPFFIFIFG--------------- 96
Query: 227 IALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSA 286
L I F+ V E+ R + +
Sbjct: 97 -------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCV 149
Query: 287 TFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGA 346
+A +G + A+ + + F S +
Sbjct: 150 GWALGASI---VGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS 206
Query: 347 PISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAV 406
S ++ + + L + V + E V
Sbjct: 207 AFS------LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRV 260
Query: 407 FIAVIGTLSVSAQIIL----GCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAG 462
+ T+ + ++N +G K+ +++ ++++ F + +
Sbjct: 261 -FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILK 319
Query: 463 ILASLA-SITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIF 514
L ++ + + + + L + G ++
Sbjct: 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
Score = 31.4 bits (71), Expect = 0.88
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 6/130 (4%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 194
G + + L+ + + G K LL+ + + I + + ++
Sbjct: 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321
Query: 195 SGV-FAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTW---WFFAMISISGV 250
F Y+ E + Y + F K + M + + I G
Sbjct: 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGA 381
Query: 251 FAVTFSVVFA 260
+ V V
Sbjct: 382 YLVLGLVALG 391
Score = 29.9 bits (67), Expect = 2.5
Identities = 17/121 (14%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 364 KDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILG 423
K+ M + F + + ++L + + + A I S+ Q + G
Sbjct: 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64
Query: 424 CLMNVLGAKHTII-----IGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISAL 478
L + LG + ++ + ++F + +G Q ++ + + + A +
Sbjct: 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124
Query: 479 V 479
V
Sbjct: 125 V 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 6e-06
Identities = 73/415 (17%), Positives = 118/415 (28%), Gaps = 151/415 (36%)
Query: 54 TYVLGRV---RKLVKSLIKSLVKSTKSPVNSELFVWFVLQTSGIGEP---------SVYH 101
Y+ R+ R K +L ++ N++L F Q G + YH
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQ--GNTDDYFEELRDLYQTYH 181
Query: 102 ALVVIFLEFFAWGLLT---------------MPIISVLNR--TFPDHTFLMNGLIMGIKG 144
LV ++F A L + I+ L PD +L++
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS-------- 233
Query: 145 FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSV 204
+S PLIG + L VT L+ + + G + +
Sbjct: 234 --IPISCPLIGVIQ---------LAHYVVTA---KLLGFTPGELRS--YLKGATGHSQGL 277
Query: 205 VFAYV---ADVTEE--HE--------------RS-LAYGLKFIALKIILMTLD------T 238
V A D + E R AY + I+ +L+ +
Sbjct: 278 VTAVAIAETD-SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 239 WWFFAMISISGVFAVTFSVVFAYVADV-----TEEH-----------------ERSLAYG 276
M+SIS + T V YV + +SL YG
Sbjct: 337 P----MLSISNL---TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YG 388
Query: 277 LSFS----------------FSQVSATFAASMVFSPALGA-----YLEKTYSLSLVVAVA 315
L+ + FS+ F S F P + + L L V
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKF--SNRFLP-VASPFHSHLLVPASDLINKDLVK 445
Query: 316 TAVAI----LD--VFFI-----LVAVPESLPEK-VRQASWGGAPISWEQADPFAS 358
V+ + V+ L + S+ E+ V P+ WE F +
Sbjct: 446 NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII--RLPVKWETTTQFKA 498
Score = 45.4 bits (107), Expect = 5e-05
Identities = 97/598 (16%), Positives = 162/598 (27%), Gaps = 216/598 (36%)
Query: 50 SLETT-------YVLGRVRKLVKSLIKSLVKSTKSPVNSELFVWFVLQTSGIGEPSVYHA 102
SLE + + + + K L + T+ + EP+
Sbjct: 15 SLEHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADD-------------EPTTPAE 59
Query: 103 LVVIFLEFFAWGL------LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 156
LV FL + + + ++++ F ++ +L I + L
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENCYLEGN---DIHALAAKLLQENDTT 115
Query: 157 LSDLWGRKLFLLITVFVT---CLPIPLMTLDTWWFF--AMISISGVFAV----------- 200
L K LI ++T P F + + A+
Sbjct: 116 LV-----KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 201 -----TFSVVFAYVADVTEEHERSLA--------------YGLKFIA-LKIILMTLDTWW 240
+ V D+ + +L+ GL + L+ T D +
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 241 F-FAMISISGVFAVTFS--VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPA 297
IS + + + VV A + T RS G +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT------------------- 271
Query: 298 LGAYLEKTYSLSLVVAVATAVA------------ILDV-FFILV----AVPE-SLPEKVR 339
+S LV AVA A + V FFI V A P SLP +
Sbjct: 272 -------GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 340 QASWG---GAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV 396
+ S G P P S+ + ++Q + V S+LP Q
Sbjct: 325 EDSLENNEGVP------SPMLSISNLTQEQ--VQDYVNKTNSHLPAGKQ----------- 365
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456
V ++ L+N GAK+ ++ G + YG +
Sbjct: 366 -----VEIS-------------------LVN--GAKNLVVSGPPQSL-----YGLNLTLR 394
Query: 457 MMWAAGILASLASITY----PAISA--L-VSM--HS------------DADRQGL----- 490
A L + I + S L V+ HS D + +
Sbjct: 395 KAKAPSGLDQ-SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 491 -----VQGMVTG--MRGLCNGLGPAMFGLIFYMFHVD----LSDGP----DVGPGTLA 533
V G +R L + + I + V D GPG +
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL-PVKWETTTQFKATHILDFGPGGAS 510
Score = 41.6 bits (97), Expect = 8e-04
Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 27/125 (21%)
Query: 243 AMISISGV--FAVTFSVVFA---YVADVTEEHERSLA-YGL-SFSFSQVSATFAASMV-- 293
A+ S++ V VVF + E + YG+ + + +V+A+F+ +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 294 ----FSPALGAYLE--------KTYSLS-LVVAVATAVAILDVFFI----LVAVPESLP- 335
G +E + Y + + A+ T +L+ + ++ + +SL
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 336 EKVRQ 340
E+V
Sbjct: 1889 EEVEG 1893
Score = 40.8 bits (95), Expect = 0.001
Identities = 50/300 (16%), Positives = 92/300 (30%), Gaps = 93/300 (31%)
Query: 330 VPESLPEKVRQASWGGAPISWEQ-----ADPFASLRKVGKDQTILMLCVTVFLSYL---- 380
VP + + A EQ +P + T L V FL Y+
Sbjct: 22 VPTAS--------FFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGKFLGYVSSLV 72
Query: 381 --PEAGQYSCLFVYLKLVMG-FD-------EVH--VAVFIAVIGTLSVSAQIILGC---- 424
+ GQ+ + L L + F+ ++H A + T V + ++
Sbjct: 73 EPSKVGQFDQV---LNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA 129
Query: 425 ---------------LMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGI----LA 465
L +G + ++ + FG Q G
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----------FGGQ-------GNTDDYFE 171
Query: 466 SLASI--TY-PAISALVSMHSDADRQGLVQGMVTGMRGLCNGL-------GPAMFGLIFY 515
L + TY + L+ ++ L++ + + GL P+ Y
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 516 MFHVDLSDGPDVGPGTLAN--RTNNVNSYPSVIPGP--PFVFGALLVIAALLVATFIPES 571
+ + +S P +G LA+ T + + PG ++ GA L+ A I E+
Sbjct: 231 LLSIPIS-CPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAET 286
Score = 35.8 bits (82), Expect = 0.044
Identities = 39/256 (15%), Positives = 71/256 (27%), Gaps = 74/256 (28%)
Query: 259 FAYVADVTEEHERSLAYGLSFSFSQVSATFAASMV--FSPALGAYLEKTYSLSLVVAVAT 316
DV + FS + ++ F G + + YS +++
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS-AMIFE--- 1694
Query: 317 AVAILDVFFILVAVPESLPEKVRQASWGG-------------APISWEQADPFASLRKVG 363
I+D + + + E ++ A E+A F L+ G
Sbjct: 1695 --TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-AFEDLKSKG 1751
Query: 364 KDQTILMLCVTVF--LSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQII 421
F S L G+Y+ L +A +S+ + +
Sbjct: 1752 LIPA-----DATFAGHS-L---GEYAAL------------ASLA------DVMSIESLVE 1784
Query: 422 L----GCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISA 477
+ G M V + + G + M A AS + A+
Sbjct: 1785 VVFYRGMTMQVAVPRDEL----------------GRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 478 LVSMHSDADRQG-LVQ 492
+V R G LV+
Sbjct: 1829 VVE--RVGKRTGWLVE 1842
Score = 32.3 bits (73), Expect = 0.59
Identities = 31/169 (18%), Positives = 45/169 (26%), Gaps = 50/169 (29%)
Query: 206 FAYVADVTEEHERSLAYGLKFIALKIIL--MTLDTWWF------------FAMISISGVF 251
DV + F L I++ T F AMI + V
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 252 A-VTFSVVFAYV----ADVTEEHERSLAYGLSF-SFSQVSATFAASMVFSPALGAYLEKT 305
+ +F + T E+ L LS F+Q A A L+
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGL---LSATQFTQP-ALTLMEK----AAFEDLKSK 1750
Query: 306 YSLSLVVAVA-------TA-VAILDVFFI-----LV---------AVPE 332
+ A A ++ DV I +V AVP
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 4e-05
Identities = 43/327 (13%), Positives = 85/327 (25%), Gaps = 113/327 (34%)
Query: 25 IRSRKSILNDGIVTKVPLWQY----ICMDSLETTYVL----GRVRKLV----KSLIKSLV 72
I+ R + + + Y + + +++ + L+ K + L
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 73 KSTKSPVNSELFVWFVLQTSGIGEPSVYHALVVIFLEFFA-W---------------GLL 116
+T + ++ + + V +
Sbjct: 283 AATTTHISLDHHSM------TLTPDEV--------KSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 117 TMPIISVLNRTFPDH-----TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 171
+ II+ R + L I+ L+ L RK+F ++V
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFDRLSV 380
Query: 172 FVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE-HERSLA--------Y 222
F IP + L W F +I V V + H+ SL
Sbjct: 381 FPPSAHIPTILLSLIW-FDVIKSD-------------VMVVVNKLHKYSLVEKQPKESTI 426
Query: 223 GLKFIALKI-------------------ILMTLDTWWFFAMISISGVFAVTFSVVFAYVA 263
+ I L++ I T D + F ++++
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD-SDDLIPPYLDQYF-------YSHIG 478
Query: 264 ---DVTEEHER----SLAYGLSFSFSQ 283
E ER + + L F F +
Sbjct: 479 HHLKNIEHPERMTLFRMVF-LDFRFLE 504
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 36.1 bits (84), Expect = 0.028
Identities = 27/241 (11%), Positives = 73/241 (30%), Gaps = 25/241 (10%)
Query: 281 FSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPEKVRQ 340
S ++ S + +P +G L+ ++ + F + +PE+ P +
Sbjct: 126 NSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR 185
Query: 341 ASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCL----FVYLKLV 396
S + + + + + AG + + V
Sbjct: 186 TR------------LLTSYKTLFGNSGFNCYLLMLIGGL---AGIAAFEACSGVLMGA-V 229
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVF----EMLQLMWYGFG 452
+G + V++ + + G + M W+G
Sbjct: 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVM 289
Query: 453 SQMWMMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGL 512
+ ++ A + A + +P ++ M G +V G++ + +G+ ++ +
Sbjct: 290 NVWTLLVPAALFFFGAGMLFPLATSGA-MEPFPFLAGTAGALVGGLQNIGSGVLASLSAM 348
Query: 513 I 513
+
Sbjct: 349 L 349
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 35.0 bits (81), Expect = 0.062
Identities = 35/353 (9%), Positives = 86/353 (24%), Gaps = 53/353 (15%)
Query: 239 WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPA 297
F ++ + G F + + + + ER + ++ A +
Sbjct: 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV---WN--CAHNVGGGIPPLL 174
Query: 298 LGAYLEKTYS--LSLVVAVATAVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADP 355
+ +L + A+ + F ++ +
Sbjct: 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKA 234
Query: 356 -------FASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLF---VYLKLVMGFDEVHVA 405
++ V ++ + + + YL +Y L YLK V F +
Sbjct: 235 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYL---LRYGILDWSPTYLKEVKHFALDKSS 291
Query: 406 VFIAVIGTLSVSAQIILGCLMNVLGAKH-----TIIIGLVFEMLQLMWYGFGSQMWMMWA 460
+ + ++ G + + + + + LV + W +
Sbjct: 292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351
Query: 461 A-GILASLASITYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHV 519
++ L I + G G GL LG ++
Sbjct: 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGT----AAGFTGLFGYLGGSVAASAI----- 402
Query: 520 DLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIAALLVATFIPESI 572
G + + V ++A +L+ +
Sbjct: 403 ---------VGYTVDFFGWDGGF--------MVMIGGSILAVILLIVVMIGEK 438
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 32.2 bits (73), Expect = 0.56
Identities = 52/391 (13%), Positives = 111/391 (28%), Gaps = 60/391 (15%)
Query: 102 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG--FLS-FLSAPLIGALS 158
++ FF W + + +L F L N I+ + F+ G L
Sbjct: 27 PFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILM 85
Query: 159 DLWGRK----LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVF------AY 208
K L + L P + + F + G+F + + +
Sbjct: 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF----LVGLFIIAAGLGCLETAANPF 141
Query: 209 VADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 268
V + E ++ L F + +I V ++ + V +++
Sbjct: 142 VTVLGPESSG---------HFRLNLAQT----FNSFGAIIAVVFGQS-LILSNVPHQSQD 187
Query: 269 HERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILV 328
+ S V +P + + V ++ + +L
Sbjct: 188 VLDKM----SPEQLSAYKHSLVLSVQTPYMI--------------IVAIVLLVALLIMLT 229
Query: 329 AVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSC 388
P + A +Q ASL ++ + + + F + +S
Sbjct: 230 KFPALQSDNHSDA---------KQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSY 280
Query: 389 LFVYL-KLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLM 447
L Y + + G A ++ + L++ + + M +
Sbjct: 281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCL 340
Query: 448 WYGFGSQMWMMWAAGILASLASITYPAISAL 478
F + A + ++ SI YP I +L
Sbjct: 341 ISAFAGGHVGLIALTLCSAFMSIQYPTIFSL 371
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral
membrane protein, prelami processing, ageing, progeria;
HET: PC1; 3.40A {Homo sapiens}
Length = 482
Score = 28.7 bits (63), Expect = 6.4
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 1/96 (1%)
Query: 214 EEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSL 273
E E+S Y L ++ + G + + + E +
Sbjct: 62 ETFEKSRLYQLDKSTFSFWSGLYSETEGTLIL-LFGGIPYLWRLSGRFCGYAGFGPEYEI 120
Query: 274 AYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLS 309
L F + A + +S +E+ + +
Sbjct: 121 TQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFN 156
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A;
PDE 10A, PDE10 inhibitors, allosteric enzyme,
alternative splicing; HET: PF9; 1.53A {Rattus
norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Length = 380
Score = 28.3 bits (63), Expect = 6.6
Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 34/131 (25%)
Query: 59 RVRKLVKSLI---------------KSLVKSTKSPVNSELFVWFVLQT-------SGIGE 96
+V ++++ I + + ++ ++++ V+ + +
Sbjct: 207 QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLNLHNQSHRDRVIGLMMTACDLCSVTK 266
Query: 97 PSVYHALVV--IFLEFFAWG----LLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLS 150
L I+ EF+A G L + I +++R + G + GF + ++
Sbjct: 267 LWPVTKLTANDIYAEFWAEGDEMKKLGIQPIPMMDR--DKRDEVPQGQL----GFYNAVA 320
Query: 151 APLIGALSDLW 161
P L+ +
Sbjct: 321 IPCYTTLTQIL 331
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: 2PE; 1.70A
{Silicibacter SP}
Length = 235
Score = 28.0 bits (62), Expect = 7.0
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 288 FAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE--KVRQASWGG 345
A++V +P + L K ++ V V A+ + VAV ++ A G
Sbjct: 49 LRAALVLAPEV--PLAKAMAMLPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGR 106
Query: 346 APISWEQADP 355
I+ DP
Sbjct: 107 LRIAASTDDP 116
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 28.0 bits (63), Expect = 9.2
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 19/81 (23%)
Query: 455 MWMMWAAGILASL--ASITYP------------AISALVSMHSDADRQGLVQGMVT---- 496
M + + A+ IT+P LV + A +G++ ++T
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 497 -GMRGLCNGLGPAMFGLIFYM 516
G R L NGL + + +
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFA 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.419
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,790,568
Number of extensions: 536743
Number of successful extensions: 1145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 58
Length of query: 594
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 495
Effective length of database: 3,937,614
Effective search space: 1949118930
Effective search space used: 1949118930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.7 bits)