RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16660
(594 letters)
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 43.6 bits (101), Expect = 5e-05
Identities = 38/419 (9%), Positives = 97/419 (23%), Gaps = 53/419 (12%)
Query: 97 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 156
+ + + F FF G P + + G+I S L PL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65
Query: 157 LSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEH 216
LSD G + +LL + + + +
Sbjct: 66 LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP---------------------------- 97
Query: 217 ERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYG 276
+ ++ S V + F A E ++
Sbjct: 98 ----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 277 LSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVATAVAILDVFFILVAVPESLPE 336
+F F + ++ + + + + IL + A ++
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALIL-AVLLFFAKTDAPSS 194
Query: 337 KVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLV 396
+ G ++ R+ L + + + + +
Sbjct: 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Query: 397 MGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMW 456
V V + + + G ++ G + + + S +
Sbjct: 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALE 314
Query: 457 MMWAAGILASLASITYPAISALVSMHSDADRQGLVQGMVTGM-RGLCNGLGPAMFGLIF 514
++ + ++ + + + + L + G ++
Sbjct: 315 VVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373
Score = 32.1 bits (71), Expect = 0.19
Identities = 18/162 (11%), Positives = 47/162 (29%)
Query: 364 KDQTILMLCVTVFLSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILG 423
K+ M + F + + ++L + + + A I S+ Q + G
Sbjct: 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64
Query: 424 CLMNVLGAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHS 483
L + LG + ++ + ++ + ++ ++ S+ Y +
Sbjct: 65 LLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPA 124
Query: 484 DADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSDGP 525
V G G + L + + +
Sbjct: 125 VEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN 166
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 33.5 bits (75), Expect = 0.063
Identities = 38/389 (9%), Positives = 87/389 (22%), Gaps = 49/389 (12%)
Query: 137 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISG 196
G + S ++G++SD ++FL + + + M W ++
Sbjct: 62 GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI----- 116
Query: 197 VFAVTFSVVFAYVADVTEEHERSLAYGLKFIALKIILMTLDTWWFFAMISISGVFAVTFS 256
+ F +
Sbjct: 117 -------------------------------------AVMFVLLFLCGWFQGMGWPPCGR 139
Query: 257 VVFAYVADVTEEHERSLAYGLSFSFSQVSATFAASMVFSPALGAYLEKTYSLSLVVAVAT 316
+ + + S+ + + + ++
Sbjct: 140 TMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF 199
Query: 317 AVAILDVFFILVAVPESLPEKVRQASWGGAPISWEQADPFASLRKVGKDQTILMLCVTVF 376
A A++ +P K E ++ V ++ + + +
Sbjct: 200 AFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259
Query: 377 LSYLPEAGQYSCLFVYLKLVMGFDEVHVAVFIAVIGTLSVSAQIILGCLMNVLGAKHTII 436
YL G YLK V F + + + ++ G + + + +
Sbjct: 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319
Query: 437 IGLVFE------MLQLMWYGFGSQMWMMWAAGILASLASITYPAISALVSMHSDADRQGL 490
G+ F + G+ M ++ L I + G
Sbjct: 320 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 379
Query: 491 VQGMVTGMRGLCNG-LGPAMFGLIFYMFH 518
G L A+ G F
Sbjct: 380 AAGFTGLFGYLGGSVAASAIVGYTVDFFG 408
>d1v30a_ d.269.1.1 (A:) Hypothetical protein PH0828 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 118
Score = 30.2 bits (68), Expect = 0.26
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 518 HVDLSDGPDVGPGTLANRTNNVNSYPSVIPGPPFVFGALLVIA 560
H L +G + P + G + + +
Sbjct: 17 HWYLKGAKFLGEDWIEGYQLYFEYLPYAVKGKGKLKVEVYEVD 59
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 162
Score = 27.3 bits (60), Expect = 3.2
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 418 AQIILGCLMNVL--GAKHTIIIGLVFEMLQLMWYGFGSQMWMMWAAGILASLASITY--P 473
+L + L GA+ I + + + A A P
Sbjct: 75 LIAVLESVRKTLSVGAEPLAI------TNCVNYGDPDVDPVGLSAMMTALKNACEFSGVP 128
Query: 474 AISALVSMHSDADRQGLVQGMVTGMRGLCN 503
S S+++ + + +V GM G N
Sbjct: 129 VASGNASLYNTYQGKPIPPTLVVGMLGKVN 158
>d1xhsa_ d.269.1.1 (A:) Hypothetical protein YtfP {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 26.5 bits (58), Expect = 4.7
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 514 FYMFHVDLSDGPDVGPGTLAN-RTNNVNSYPSVIPGPPFVFGALLVI 559
H +++ +G ++ N + ++ YP +PG V G + I
Sbjct: 13 QGNSHW-MTNAQLLGDFSIDNYQLYSLGHYPGAVPGNGTVHGEVYRI 58
>g1ko6.1 b.119.1.1 (A:,B:) C-terminal autoproteolytic domain of
nucleoporin nup98 {Human (Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 26.7 bits (59), Expect = 5.0
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 471 TYPAISALVSMHSDADRQGLVQGMVTGMRGLCNGLGPAMFGLIFYMFHVDLSD 523
T P++ L + ++ + +V G +G +G I++ V+L++
Sbjct: 15 TIPSMDDLAKI-TNEKGECIVSDFTIGRKG---------YGSIYFEGDVNLTN 57
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 196
Score = 26.4 bits (58), Expect = 8.0
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 14/120 (11%)
Query: 55 YVLGRVRKLVKSLIKSLVKSTKSPVNSELFVWFVLQTSGIGEPSVYH------ALVVI-- 106
+LG++ LVK I+ + +S P + V + T G V+ AL V
Sbjct: 45 LILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPR 104
Query: 107 ------FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL 160
F F L + L ++ GI+ + F L DL
Sbjct: 105 HVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDL 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.139 0.419
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,086,099
Number of extensions: 93416
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 23
Length of query: 594
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 504
Effective length of database: 1,171,896
Effective search space: 590635584
Effective search space used: 590635584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.5 bits)