Query psy16661
Match_columns 190
No_of_seqs 207 out of 602
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 18:48:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00182 TBOX T-box DNA binding 100.0 5.7E-40 1.2E-44 261.8 9.5 137 44-186 3-140 (188)
2 smart00425 TBOX Domain first f 100.0 2.9E-39 6.3E-44 258.5 9.9 137 44-186 2-141 (190)
3 KOG3586|consensus 100.0 9.4E-38 2E-42 266.4 8.2 136 43-183 80-217 (437)
4 KOG3585|consensus 100.0 7.5E-37 1.6E-41 262.8 9.7 136 43-183 25-161 (328)
5 KOG3586|consensus 100.0 7E-35 1.5E-39 248.9 8.8 146 1-161 109-265 (437)
6 PF00907 T-box: T-box; InterP 100.0 1.3E-34 2.7E-39 231.3 5.9 136 45-186 2-138 (184)
7 cd00182 TBOX T-box DNA binding 100.0 2.2E-30 4.9E-35 206.7 6.3 144 1-164 31-182 (188)
8 smart00425 TBOX Domain first f 100.0 5.4E-29 1.2E-33 199.3 8.6 151 1-161 30-181 (190)
9 KOG3585|consensus 100.0 2.2E-28 4.7E-33 210.4 9.8 142 1-161 54-204 (328)
10 PF00907 T-box: T-box; InterP 99.9 9.5E-23 2.1E-27 162.7 2.5 143 1-161 29-179 (184)
11 PF10634 Iron_transport: Fe2+ 63.1 70 0.0015 24.8 8.1 81 15-108 40-124 (151)
12 PF04775 Bile_Hydr_Trans: Acyl 59.5 13 0.00028 27.7 3.4 22 5-26 5-26 (126)
13 PF00041 fn3: Fibronectin type 54.0 26 0.00057 22.5 4.0 24 80-103 55-78 (85)
14 PF04775 Bile_Hydr_Trans: Acyl 51.9 26 0.00056 26.0 4.0 23 80-102 4-26 (126)
15 KOG0196|consensus 43.5 1.9E+02 0.0042 28.8 9.1 22 5-26 398-419 (996)
16 PF09294 Interfer-bind: Interf 40.1 48 0.001 23.0 3.7 21 6-26 68-88 (106)
17 smart00060 FN3 Fibronectin typ 31.5 54 0.0012 19.7 2.6 22 5-26 57-78 (83)
18 cd00063 FN3 Fibronectin type 3 31.5 50 0.0011 20.6 2.5 19 4-22 56-74 (93)
19 COG4672 gp18 Phage-related pro 25.9 1.4E+02 0.0029 24.6 4.4 28 9-36 11-39 (231)
No 1
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=100.00 E-value=5.7e-40 Score=261.79 Aligned_cols=137 Identities=43% Similarity=0.752 Sum_probs=124.7
Q ss_pred eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661 44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD 122 (190)
Q Consensus 44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e 122 (190)
++++.+.+-|.+++.. .+ +...+.||||||.+++.++||||++.|++.|+|+++|++||+|.+|+|.++|++|
T Consensus 3 ~v~L~~~~lW~~f~~~~tE------MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e 76 (188)
T cd00182 3 KVSLENRELWKKFHELGTE------MIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAE 76 (188)
T ss_pred EEEEcCHHHHHhhcccCcE------EEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCC
Confidence 5666677778777752 33 3346789999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCCcc
Q psy16661 123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTST 186 (190)
Q Consensus 123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~~~ 186 (190)
+..+.++|+|||||++|++||+++|+|.+||||||..++.++|+|+|||||+|++.|.+....+
T Consensus 77 ~~~~~~~~~HPdsp~tG~~wM~~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~ 140 (188)
T cd00182 77 PHLPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSS 140 (188)
T ss_pred CCCCCceEECCCCCcCHHHHhhCccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCc
Confidence 9999999999999999999999999999999999998888999999999999999999977643
No 2
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=100.00 E-value=2.9e-39 Score=258.53 Aligned_cols=137 Identities=44% Similarity=0.762 Sum_probs=124.6
Q ss_pred eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661 44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD 122 (190)
Q Consensus 44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e 122 (190)
++++.+.+-|.+++.+ .++. ..+.||||||.|+++++||||++.|.+.|+|+++|++||+|++|+|.++|++|
T Consensus 2 ~v~L~~~~lW~~f~~~~tEMI------VTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e 75 (190)
T smart00425 2 KVSLEDKELWRKFHELGTEMI------VTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAE 75 (190)
T ss_pred EEEEcCHHHHHhhCccCcEEE------EecCCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCC
Confidence 4566677778888765 4444 36789999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcE--EcccccccccCCCcccCCCcc
Q psy16661 123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFV--MSASVDRIAGSNDLLLDKTST 186 (190)
Q Consensus 123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i--~l~smhky~pv~~i~~~p~~~ 186 (190)
+..+.++|+|||+|++|++||+++|+|.+||||||..+++|+| +|+|||||+|++.|.+...++
T Consensus 76 ~~~~~~~~~Hpdsp~tG~~wM~~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~ 141 (190)
T smart00425 76 PHMPSRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDIS 141 (190)
T ss_pred CCCCCceEECCCCccCHHHHhhCcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCcc
Confidence 9999999999999999999999999999999999999998886 999999999999999877654
No 3
>KOG3586|consensus
Probab=100.00 E-value=9.4e-38 Score=266.40 Aligned_cols=136 Identities=40% Similarity=0.738 Sum_probs=120.2
Q ss_pred eeeEeeCccccceEEEeeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceee--eeCCeeeEecc
Q psy16661 43 MKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYK--FHNSRWMVAGK 120 (190)
Q Consensus 43 ~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~--~~~~~w~~~g~ 120 (190)
..+.+.++.-|.++|=+. -++..++.||||||++++.++||||.+.|.++||||++|++||| |++.+|.++|+
T Consensus 80 i~~~Le~keLWdrFh~lG-----TEMIITKsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 80 IQVQLETKELWDRFHDLG-----TEMIITKSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred eEEEeehHHHHHHHHhcC-----ceEEEecccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecC
Confidence 344555666677766332 14566899999999999999999999999999999999999888 58999999999
Q ss_pred CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661 121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK 183 (190)
Q Consensus 121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p 183 (190)
+|+..+.|+|+|||+|++|++||++.|+|+|||||||..+++|+|+|||||||.|-.-|..+.
T Consensus 155 ADp~~p~R~yvHPDSP~sGe~wmkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~ 217 (437)
T KOG3586|consen 155 ADPAPPPRVYVHPDSPASGEQWMKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLD 217 (437)
T ss_pred CCCCCCCceeeCCCCCCCHHHHHHhhhchheeeccccccccCCcEeeecccccCCceEEEEec
Confidence 999999999999999999999999999999999999999999999999999999976666554
No 4
>KOG3585|consensus
Probab=100.00 E-value=7.5e-37 Score=262.77 Aligned_cols=136 Identities=38% Similarity=0.671 Sum_probs=123.0
Q ss_pred eeeEeeCccccceEEEeeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661 43 MKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD 122 (190)
Q Consensus 43 ~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e 122 (190)
.++++...+-|+++|-+..+- ...+.||||||.++|+|+||||+++|+|.|+|+++|++||+|.+|+|+++|++|
T Consensus 25 ~~v~l~~~eLW~~fh~~~~Em-----iitK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e 99 (328)
T KOG3585|consen 25 VKVSLENRELWKKFHEHGTEM-----IVTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAE 99 (328)
T ss_pred cEEEEechhHHHhhccCccEE-----EEecCCceeccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCC
Confidence 455555556677777554322 237899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCc-EEcccccccccCCCcccCC
Q psy16661 123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGF-VMSASVDRIAGSNDLLLDK 183 (190)
Q Consensus 123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~-i~l~smhky~pv~~i~~~p 183 (190)
+..+.++|+|||+++||++||+.+|+|++||||||..+++++ |+|+|||||+|++.|.+..
T Consensus 100 ~~~~~~~~~Hpd~p~TG~~WM~~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~ 161 (328)
T KOG3585|consen 100 PHVPSKVYVHPDGPATGAHWMSEPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELD 161 (328)
T ss_pred CCCCceEEEecCCccchHHHhcCCcccceeEeeccccccCCceEeeecccceeeeEEEEEcc
Confidence 988999999999999999999999999999999999999998 9999999999999999986
No 5
>KOG3586|consensus
Probab=100.00 E-value=7e-35 Score=248.86 Aligned_cols=146 Identities=25% Similarity=0.345 Sum_probs=122.8
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCccee--cccCccceeeeeEeeCccccceEEEeeeecccCcccccccccccc
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYK--FHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMF 78 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r--~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~f 78 (190)
|||+++|+++||||.++|.|+|||||+|++||| ||++.|+.+||++. .+++|+|+|+|++..++. ||++-++|
T Consensus 109 MFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkADp---~~p~R~yvHPDSP~sGe~--wmkqiVSF 183 (437)
T KOG3586|consen 109 MFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKADP---APPPRVYVHPDSPASGEQ--WMKQIVSF 183 (437)
T ss_pred ccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCCC---CCCCceeeCCCCCCCHHH--HHHhhhch
Confidence 999999999999999999999999999999998 89999997777653 256899999999997655 89999999
Q ss_pred ceeeEEEeCCCCCCceEEE--------EEEEEcCCceeeeeCCeeeEecc-CCCCCCcceeecCCCCCchhHhhcCccee
Q psy16661 79 PAYKVRVMGLDKKAKYILL--------MDIVAADDCRYKFHNSRWMVAGK-ADPEMPKRMYIHPDSPSTGDQWMQKVVSF 149 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~--------l~~~~~d~~ry~~~~~~w~~~g~-~e~~~~~~~~~hp~s~~tG~~wm~~~v~F 149 (190)
.++|+|+|.||.+++.+|. +|+++.|.. + ...+ .+..+..++|+|||+.||++|+||| ..|
T Consensus 184 dK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~-------~--~s~~~~~~~e~~kTF~FpET~FtAVTAYQN-q~I 253 (437)
T KOG3586|consen 184 DKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPG-------N--DSNKYVEKNEGFKTFVFPETVFTAVTAYQN-QRI 253 (437)
T ss_pred heeeccccccccCCcEeeecccccCCceEEEEecCC-------C--CccccccccccceeEeccceeEEEEeeccc-cee
Confidence 9999999999999987765 444444432 1 1111 2222346899999999999999999 999
Q ss_pred eEEEeecCCCCC
Q psy16661 150 HKLKLTNNISDK 161 (190)
Q Consensus 150 ~klKItnn~~~k 161 (190)
+||||..|+|||
T Consensus 254 TkLKI~sNPFAK 265 (437)
T KOG3586|consen 254 TKLKIESNPFAK 265 (437)
T ss_pred eeeeeccCcccc
Confidence 999999999998
No 6
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=100.00 E-value=1.3e-34 Score=231.25 Aligned_cols=136 Identities=35% Similarity=0.608 Sum_probs=101.6
Q ss_pred eEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCCC
Q psy16661 45 FRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADP 123 (190)
Q Consensus 45 ~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~ 123 (190)
+++...+-|.+++-+ .++ .....||++||.|+|+|+||||++.|+|.|+|+++|++||+|.+|+|.+++++++
T Consensus 2 V~L~~~~lW~~f~~~~~EM------ivt~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~ 75 (184)
T PF00907_consen 2 VSLENEELWKKFHELGNEM------IVTKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEP 75 (184)
T ss_dssp EEETTHHHHHHHHHH--EE------E-BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---
T ss_pred eECccHHHHHHhccCCCEE------EEeecccccccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccc
Confidence 455555666666532 333 3467899999999999999999999999999999999999999999999999998
Q ss_pred CCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCCcc
Q psy16661 124 EMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKTST 186 (190)
Q Consensus 124 ~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~~~ 186 (190)
..+.+.+.||+++++|+.||+++|+|+++||||+..++++.|+|+|||||+||++|.+.+...
T Consensus 76 ~~~~~~~~h~~~~~~G~~WM~~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~ 138 (184)
T PF00907_consen 76 PMPPRVVIHPDGPQTGSEWMKNGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNG 138 (184)
T ss_dssp B-----EE-TT-SEEHHHHHHS-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTS
T ss_pred cccceEEEEecCcCCHHHhCcccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCcc
Confidence 888899999999999999999999999999999998887889999999999999999988763
No 7
>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.
Probab=99.96 E-value=2.2e-30 Score=206.66 Aligned_cols=144 Identities=29% Similarity=0.359 Sum_probs=120.7
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||+++|.++|||+++|++||||++++|.++++++.. +..+.++|+|++.. +.+||.+...|.+
T Consensus 31 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~---~~~~~~~HPdsp~t--G~~wM~~~isF~k 105 (188)
T cd00182 31 MFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPH---LPPRVYVHPDSPAT--GAHWMKQPVSFDK 105 (188)
T ss_pred cccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCC---CCCceEECCCCCcC--HHHHhhCccccch
Confidence 899999999999999999999999999999999999999999887632 45688999999985 5668999999999
Q ss_pred eeEEEeCCCCC--------CceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661 81 YKVRVMGLDKK--------AKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL 152 (190)
Q Consensus 81 lk~~i~GLdp~--------~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl 152 (190)
+|++++.++.+ .+|+..|||+++++.- .. .....+.|.+|++.|+++++||| ..+++|
T Consensus 106 vKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~----~~---------~~~~~~~f~F~eT~FiAVTaYqN-~~It~l 171 (188)
T cd00182 106 LKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSS----PF---------SWRLVQTFSFPETEFIAVTAYQN-QEITQL 171 (188)
T ss_pred hhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCc----cc---------cccccEEEECCCeEEEEEEeecC-HhHhhh
Confidence 99999985554 4566666666665420 00 12345789999999999999999 899999
Q ss_pred EeecCCCCCCCc
Q psy16661 153 KLTNNISDKHGF 164 (190)
Q Consensus 153 KItnn~~~k~~~ 164 (190)
||.|||||| ||
T Consensus 172 Ki~~NpfAk-gf 182 (188)
T cd00182 172 KIDNNPFAK-GF 182 (188)
T ss_pred hhcCCcccc-cc
Confidence 999999998 54
No 8
>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein.
Probab=99.96 E-value=5.4e-29 Score=199.31 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=117.0
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||.++|.++|||+++|++||||++++|.++++++.. +..+.++|+|++.. +..||.+...|.+
T Consensus 30 mFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e~~---~~~~~~~Hpdsp~t--G~~wM~~~v~F~k 104 (190)
T smart00425 30 MFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPH---MPSRVYVHPDSPAT--GAHWMKQPVSFDK 104 (190)
T ss_pred eCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCCCC---CCCceEECCCCccC--HHHHhhCcccccc
Confidence 899999999999999999999999999999999999999999887632 23678999999985 5668999999999
Q ss_pred eeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEec-cCCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCC
Q psy16661 81 YKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAG-KADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNIS 159 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g-~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~ 159 (190)
+|++++.++.+++.++.|+ +.|||...----.... ........+.|.+|++.|+++++||| ..+++|||.+||+
T Consensus 105 vKlTN~~~~~~~~i~i~L~----SmhkY~P~l~I~~~~~~~~~~~~~~~~f~F~eT~FiaVTaYqN-~~it~lKi~~Npf 179 (190)
T smart00425 105 VKLTNNQSDKNGHLQIILN----SMHKYQPRLHIVEVDDISKEILSQFKTFVFPETQFIAVTAYQN-QKITKLKIDNNPF 179 (190)
T ss_pred cceeccccccCCcEeeeec----cCceEeeEEEEEEeCCcccccccceeEEECCceEEEEEeeecc-cchhhccccCCCC
Confidence 9999987666655321221 3444442100000000 00011234689999999999999999 8999999999999
Q ss_pred CC
Q psy16661 160 DK 161 (190)
Q Consensus 160 ~k 161 (190)
||
T Consensus 180 Ak 181 (190)
T smart00425 180 AK 181 (190)
T ss_pred cC
Confidence 98
No 9
>KOG3585|consensus
Probab=99.95 E-value=2.2e-28 Score=210.41 Aligned_cols=142 Identities=32% Similarity=0.434 Sum_probs=125.4
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||++.|+|+|||+++|++||+|+||+|.|++|++. ....++++|+|++.+| .+||.+.+.|.+
T Consensus 54 mFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e~---~~~~~~~~Hpd~p~TG--~~WM~~~V~F~k 128 (328)
T KOG3585|consen 54 MFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAEP---HVPSKVYVHPDGPATG--AHWMSEPVSFDK 128 (328)
T ss_pred eccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCCC---CCCceEEEecCCccch--HHHhcCCcccce
Confidence 89999999999999999999999999999999999999999999885 5568999999999964 558999999999
Q ss_pred eeEEEeCCCCCCc---------eEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeE
Q psy16661 81 YKVRVMGLDKKAK---------YILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHK 151 (190)
Q Consensus 81 lk~~i~GLdp~~~---------Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~k 151 (190)
||+|++.+|.++. |+..|||+++++. ...+....+.+.+++++|+++++||| .++++
T Consensus 129 vKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~-------------~~~~~~~~~~~~F~eT~FIaVTaYQn-~~it~ 194 (328)
T KOG3585|consen 129 VKITNNKSDKKGKVIILNSMHKYQPVLHIVELDAS-------------LISPEISVQSFKFPETQFIAVTAYQN-QEITK 194 (328)
T ss_pred eEeeccccccCCceEeeecccceeeeEEEEEcccc-------------cCCCccceeEEEcccceeEEeeeeec-ceehh
Confidence 9999999999999 6666777766621 11222346799999999999999999 89999
Q ss_pred EEeecCCCCC
Q psy16661 152 LKLTNNISDK 161 (190)
Q Consensus 152 lKItnn~~~k 161 (190)
|||.||++++
T Consensus 195 lKi~~Npfak 204 (328)
T KOG3585|consen 195 LKIDNNPFAK 204 (328)
T ss_pred hcccCCcccc
Confidence 9999999998
No 10
>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []. The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.
Probab=99.86 E-value=9.5e-23 Score=162.74 Aligned_cols=143 Identities=25% Similarity=0.334 Sum_probs=99.2
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||.+.|.+.|+++++|++||+|.+++|.++++.+... ..+...|++++. .+..||.+...|..
T Consensus 29 ~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~~~---~~~~~~h~~~~~--~G~~WM~~~v~F~~ 103 (184)
T PF00907_consen 29 MFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEPPM---PPRVVIHPDGPQ--TGSEWMKNGVSFDK 103 (184)
T ss_dssp -SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---B--------EE-TT-SE--EHHHHHHS-EEETT
T ss_pred cccccEEEecCCCCCcceEEEEEEEEecCceeecccccccccccccccc---cceEEEEecCcC--CHHHhCcccEEeeh
Confidence 7999999999999999999999999999999999999999988766432 255667787776 46779999999999
Q ss_pred eeEEEeCCCCCCc--------eEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661 81 YKVRVMGLDKKAK--------YILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL 152 (190)
Q Consensus 81 lk~~i~GLdp~~~--------Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl 152 (190)
++++++..+.++. |+..|+|..+++.. ..........+.+|++.|++++.|+| ..+.+|
T Consensus 104 vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~------------~~~~~~~~~~f~f~~t~FIaVT~Yqn-~~I~~l 170 (184)
T PF00907_consen 104 VKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNG------------SPSPNQPVHEFSFPETEFIAVTAYQN-EEIRQL 170 (184)
T ss_dssp -EEESSTT-TST-EE--TTEEEEEEEEEEECTTTS------------CCCSCSSEEEEE-GGG-EEEESS-SS-HHHHHH
T ss_pred hhhhCCCCCcccceEEccccEEEEEEEEEEcCCcc------------ccccccceEEeecCcCeEEeecccch-hhhhhh
Confidence 9999988554443 44444444443320 00012345789999999999999999 899999
Q ss_pred EeecCCCCC
Q psy16661 153 KLTNNISDK 161 (190)
Q Consensus 153 KItnn~~~k 161 (190)
||.+|++|+
T Consensus 171 K~~~Npfak 179 (184)
T PF00907_consen 171 KIDNNPFAK 179 (184)
T ss_dssp HHHH-GGGG
T ss_pred hhccCCCcc
Confidence 999999998
No 11
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=63.05 E-value=70 Score=24.84 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCceeEEEEEEEcCCcceecccCccceeeeeE--eeCccccc--eEEEeeeecccCccccccccccccceeeEEEeCCCC
Q psy16661 15 KAKYILLLDIVASDDFRYKFHNRQMFPQMKFR--VSGLDAKA--KYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDK 90 (190)
Q Consensus 15 ~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~--vsG~dp~a--k~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp 90 (190)
.++..|..||-...++..=|-.|.|+|-+.++ ++..+... +--+++ ++.. .=|...-+| -|+.
T Consensus 40 ~sdiHLEADIhA~~~n~~Gf~~G~wvPyL~v~y~i~~~~~~~~~~G~~mP-M~A~-----------DGpHYG~Nv-kl~g 106 (151)
T PF10634_consen 40 ESDIHLEADIHATEGNPNGFGEGDWVPYLTVSYEITKKGSGKVQEGTFMP-MVAS-----------DGPHYGDNV-KLDG 106 (151)
T ss_dssp G-SEEEEEEEEE-TTGCCS--TTSB--S-EEEEEEEETTTTEEEEEEEEE-EEET-----------TEEEEEEEE--STS
T ss_pred hCCeEEEEecccccCCCCcccCCcccCCcEEEEEEEeCCCCeEEEEecce-eecC-----------cCccccccc-cCCC
Confidence 56788999999999999999999999987764 33332211 111111 2221 112222222 4688
Q ss_pred CCceEEEEEEEEcCCcee
Q psy16661 91 KAKYILLMDIVAADDCRY 108 (190)
Q Consensus 91 ~~~Y~~~l~~~~~d~~ry 108 (190)
.+.|.+.++|.+.....|
T Consensus 107 ~G~Y~v~~~I~pP~~~~~ 124 (151)
T PF10634_consen 107 PGKYKVTFTIGPPSAQGF 124 (151)
T ss_dssp SEEEEEEEEEE-GGGGT-
T ss_pred CccEEEEEEEcCccccce
Confidence 899999999988877544
No 12
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=59.54 E-value=13 Score=27.69 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=15.7
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
++++|+||.|.+.+.|.+.+.-
T Consensus 5 ~~I~v~GL~p~~~vtl~a~~~~ 26 (126)
T PF04775_consen 5 VDIRVSGLPPGQEVTLRARLTD 26 (126)
T ss_dssp -EEEEES--TT-EEEEEEEEE-
T ss_pred eEEEEeCCCCCCEEEEEEEEEe
Confidence 6899999999999999888873
No 13
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=54.05 E-value=26 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.9
Q ss_pred eeeEEEeCCCCCCceEEEEEEEEc
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVAA 103 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~~ 103 (190)
...+++.||+|...|.+.|..+..
T Consensus 55 ~~~~~i~~L~p~t~Y~~~v~a~~~ 78 (85)
T PF00041_consen 55 ETSYTITGLQPGTTYEFRVRAVNS 78 (85)
T ss_dssp SSEEEEESCCTTSEEEEEEEEEET
T ss_pred eeeeeeccCCCCCEEEEEEEEEeC
Confidence 337899999999999999886644
No 14
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=51.94 E-value=26 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=15.0
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
.+.++++||.|...+.+...+.-
T Consensus 4 ~~~I~v~GL~p~~~vtl~a~~~~ 26 (126)
T PF04775_consen 4 PVDIRVSGLPPGQEVTLRARLTD 26 (126)
T ss_dssp --EEEEES--TT-EEEEEEEEE-
T ss_pred CeEEEEeCCCCCCEEEEEEEEEe
Confidence 46899999999999988877763
No 15
>KOG0196|consensus
Probab=43.48 E-value=1.9e+02 Score=28.75 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.7
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
-++.|+||.|..+|.+.++-+-
T Consensus 398 ~~V~v~~L~ah~~YTFeV~AvN 419 (996)
T KOG0196|consen 398 TSVTVSDLLAHTNYTFEVEAVN 419 (996)
T ss_pred ceEEEeccccccccEEEEEEee
Confidence 4789999999999998877665
No 16
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=40.05 E-value=48 Score=22.96 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=15.9
Q ss_pred EEEEeCCCCCCceeEEEEEEE
Q psy16661 6 KFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 6 ~~~~~gl~p~~~y~~~~d~~~ 26 (190)
.+.+.+|+|++.|++.+....
T Consensus 68 ~~~l~~L~p~t~YCv~V~~~~ 88 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQAFS 88 (106)
T ss_dssp EEEEES--TTSEEEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEEEe
Confidence 468999999999999988833
No 17
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=31.55 E-value=54 Score=19.71 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=17.2
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
..+.+.+|.|...|.+.+-...
T Consensus 57 ~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 57 TSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred cEEEEeCcCCCCEEEEEEEEEc
Confidence 4688999999999988765443
No 18
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=31.55 E-value=50 Score=20.64 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=15.5
Q ss_pred ccEEEEeCCCCCCceeEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLL 22 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~ 22 (190)
...+.+.||.|...|.+.+
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v 74 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRV 74 (93)
T ss_pred ccEEEEccccCCCEEEEEE
Confidence 3577889999999998775
No 19
>COG4672 gp18 Phage-related protein [Function unknown]
Probab=25.91 E-value=1.4e+02 Score=24.58 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=23.6
Q ss_pred EeCCCCCCceeEE-EEEEEcCCcceeccc
Q psy16661 9 VSGLDAKAKYILL-LDIVASDDFRYKFHN 36 (190)
Q Consensus 9 ~~gl~p~~~y~~~-~d~~~~d~~r~r~~~ 36 (190)
+.-|+|.++-.|. +|+.-.+..||+||+
T Consensus 11 ~~kle~sa~v~L~EiDlT~~gG~r~fF~~ 39 (231)
T COG4672 11 SQKLEQSARVVLWEIDLTVQGGERYFFCN 39 (231)
T ss_pred hhccCCCceEEEEEEecccccCceEEEec
Confidence 4568888888765 999989999999998
Done!