Query psy16661
Match_columns 190
No_of_seqs 207 out of 602
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 18:49:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h6f_A T-box transcription fac 100.0 3.6E-41 1.2E-45 269.2 6.1 136 42-183 4-140 (193)
2 2x6u_A T-box transcription fac 100.0 5.4E-41 1.8E-45 269.9 6.0 136 42-183 5-141 (203)
3 1xbr_A Protein (T protein); co 100.0 3E-40 1E-44 261.9 7.6 134 44-184 3-137 (184)
4 4a04_A T-box transcription fac 100.0 8.9E-40 3E-44 262.9 7.3 137 42-184 15-154 (203)
5 2x6u_A T-box transcription fac 100.0 3.8E-32 1.3E-36 218.4 2.9 146 1-164 35-188 (203)
6 1h6f_A T-box transcription fac 100.0 2.2E-31 7.4E-36 212.6 2.4 144 1-164 34-185 (193)
7 1xbr_A Protein (T protein); co 100.0 3.4E-31 1.2E-35 209.9 2.2 139 1-164 31-177 (184)
8 4a04_A T-box transcription fac 100.0 1.4E-30 4.6E-35 209.4 2.8 147 1-164 45-201 (203)
9 2kbg_A N-CAM 2, neural cell ad 54.2 35 0.0012 23.5 6.0 49 51-101 36-84 (114)
10 2dkm_A Collagen alpha-1(XX) ch 47.3 15 0.00051 24.3 3.0 20 6-25 62-81 (104)
11 3qht_C Monobody YSMB-1; fibron 46.7 14 0.00046 24.2 2.7 20 5-24 58-77 (97)
12 3k2m_C Monobody HA4; engineere 46.6 13 0.00046 24.5 2.7 24 5-28 60-83 (101)
13 3tes_A Tencon; fibronectin typ 46.3 14 0.00047 24.4 2.7 20 5-24 55-74 (98)
14 3lzq_A P19 protein; copper bin 46.3 90 0.0031 23.3 8.2 81 15-106 38-127 (159)
15 1j8k_A Fibronectin; EDA, TYPEI 45.7 15 0.00051 23.6 2.7 20 4-23 54-73 (94)
16 3t04_D Monobody 7C12; engineer 45.3 16 0.00054 24.3 2.9 19 5-23 64-82 (103)
17 2edd_A Netrin receptor DCC; tu 45.1 15 0.00052 25.3 2.8 19 5-23 78-96 (123)
18 2rb8_A Tenascin; beta sheet,lo 44.4 15 0.00052 24.4 2.7 22 5-26 56-77 (104)
19 2h41_A Fibronectin; beta sandw 44.0 16 0.00054 24.6 2.7 20 5-24 59-78 (95)
20 2cuh_A Tenascin-X; fibronectin 43.7 16 0.00055 24.6 2.8 22 5-26 59-80 (115)
21 3k2m_C Monobody HA4; engineere 42.6 30 0.001 22.7 4.0 26 80-105 59-84 (101)
22 3teu_A Fibcon; FN3 domain, fib 42.6 17 0.00059 23.5 2.7 22 4-25 54-75 (98)
23 2cui_A Tenascin-X; fibronectin 42.6 17 0.00057 25.0 2.7 20 6-25 71-90 (112)
24 2ede_A Netrin receptor DCC; tu 41.7 64 0.0022 20.9 5.6 24 78-101 66-89 (114)
25 2dkm_A Collagen alpha-1(XX) ch 41.7 29 0.00099 22.8 3.8 20 82-101 62-81 (104)
26 2cum_A Tenascin-X; hexabrachio 41.2 18 0.00062 24.0 2.7 21 5-25 59-79 (105)
27 1x5j_A Neogenin; RGM binding, 41.1 14 0.00046 25.2 2.0 19 5-23 68-86 (113)
28 1oww_A FN, fibronectin first t 40.2 18 0.00062 24.9 2.5 19 5-23 61-79 (98)
29 3b83_A Ten-D3; beta sheet, com 40.1 33 0.0011 22.3 3.9 24 79-102 53-76 (100)
30 2dn7_A Receptor-type tyrosine- 40.0 21 0.00072 23.2 2.8 21 5-25 62-82 (107)
31 2djs_A Ephrin type-B receptor 39.9 21 0.00073 23.3 2.8 22 5-26 63-84 (108)
32 2e7h_A Ephrin type-B receptor 39.6 23 0.0008 23.3 3.0 20 5-24 64-83 (109)
33 3n1f_C Cell adhesion molecule- 39.2 21 0.0007 23.7 2.7 20 5-24 65-84 (102)
34 1bpv_A Titin, A71, connectin; 39.0 81 0.0028 21.1 5.9 23 79-101 66-88 (112)
35 2dle_A Receptor-type tyrosine- 39.0 16 0.00056 24.7 2.2 21 5-25 59-79 (104)
36 1va9_A DOWN syndrome cell adhe 39.0 24 0.00083 23.3 3.1 22 5-26 78-99 (122)
37 3t04_D Monobody 7C12; engineer 38.6 33 0.0011 22.6 3.7 22 80-101 63-84 (103)
38 3qwq_B Adnectin; cell surface 38.5 21 0.00072 24.4 2.7 21 5-25 57-77 (114)
39 2rb8_A Tenascin; beta sheet,lo 38.3 31 0.0011 22.7 3.5 23 80-102 55-77 (104)
40 2o6f_A 34 kDa membrane antigen 38.2 1.4E+02 0.0046 23.0 7.8 81 14-106 69-154 (189)
41 2ocf_D Fibronectin; estrogen r 37.2 22 0.00075 24.5 2.7 20 5-24 82-101 (121)
42 1uen_A KIAA0343 protein; immun 37.2 25 0.00085 23.5 2.9 22 5-26 80-101 (125)
43 1uc6_A CNTF receptor, ciliary 36.7 40 0.0014 22.3 3.9 18 6-23 68-85 (109)
44 1x4y_A Biregional cell adhesio 36.5 83 0.0028 20.6 5.6 22 80-101 68-89 (114)
45 2ee3_A Collagen alpha-1(XX) ch 35.9 25 0.00086 23.8 2.7 21 5-25 60-80 (108)
46 2ed8_A Netrin receptor DCC; tu 35.0 23 0.0008 23.0 2.4 21 5-25 61-81 (106)
47 2cui_A Tenascin-X; fibronectin 34.8 37 0.0013 23.2 3.5 22 81-102 70-91 (112)
48 1x5x_A Fibronectin type-III do 34.4 40 0.0014 22.0 3.6 22 80-101 63-84 (109)
49 1ujt_A KIAA1568 protein; fibro 34.2 26 0.00088 24.3 2.6 19 5-23 75-93 (120)
50 2edb_A Netrin receptor DCC; tu 34.1 30 0.001 23.2 3.0 21 5-25 71-91 (116)
51 1x5g_A Neogenin; RGM binding, 34.1 27 0.00094 23.0 2.7 21 5-25 71-91 (116)
52 2gee_A Hypothetical protein; f 33.8 1.3E+02 0.0046 21.7 10.8 23 80-102 167-189 (203)
53 2haz_A N-CAM 1, neural cell ad 33.5 41 0.0014 21.9 3.5 23 79-101 64-86 (105)
54 1x5z_A Receptor-type tyrosine- 33.5 26 0.0009 22.9 2.5 22 4-25 69-90 (115)
55 1wfo_A Sidekick 2; FN3, cell a 33.2 31 0.0011 23.2 2.9 21 5-25 85-105 (130)
56 2edx_A Protein tyrosine phosph 33.2 1.1E+02 0.0036 20.3 6.2 24 79-102 77-100 (134)
57 2dmk_A Midline 2 isoform 2; mi 33.0 35 0.0012 23.4 3.2 19 4-22 79-97 (127)
58 3nrp_A Periplasmic protein-pro 33.0 1.5E+02 0.0052 22.1 8.0 80 15-106 40-122 (160)
59 2dmk_A Midline 2 isoform 2; mi 32.7 42 0.0014 22.9 3.6 23 79-101 78-100 (127)
60 2yrz_A Integrin beta-4; GP150, 32.6 45 0.0015 22.0 3.6 23 80-102 72-94 (118)
61 1wfn_A Sidekick 2; FN3, cell a 32.6 34 0.0012 22.7 3.0 20 4-23 73-92 (119)
62 2ekj_A Collagen alpha-1(XX) ch 32.4 15 0.00052 24.3 1.1 18 5-22 61-78 (105)
63 1x4x_A Fibronectin type-III do 32.3 48 0.0016 21.6 3.7 23 79-101 59-81 (106)
64 1x5a_A Ephrin type-A receptor 31.8 42 0.0015 22.2 3.4 19 83-101 64-82 (107)
65 1x5f_A Neogenin; RGM binding, 31.7 45 0.0015 21.9 3.5 23 79-101 73-95 (120)
66 2ee2_A Contactin-1; neural cel 31.5 46 0.0016 22.1 3.5 23 79-101 72-94 (119)
67 2ocf_D Fibronectin; estrogen r 31.2 45 0.0015 22.8 3.5 22 80-101 81-102 (121)
68 1x4z_A Biregional cell adhesio 30.5 1.2E+02 0.004 20.0 6.4 23 79-101 74-96 (121)
69 1tdq_A Tenascin-R; extracellul 30.3 1.8E+02 0.006 21.9 10.5 23 80-102 159-181 (283)
70 3t1w_A Four-domain fibronectin 30.0 2E+02 0.007 22.6 10.5 25 79-103 148-172 (375)
71 2yuw_A Myosin binding protein 29.9 1.1E+02 0.0039 19.6 6.1 23 79-101 63-85 (110)
72 2db8_A Tripartite motif protei 29.8 47 0.0016 22.0 3.3 23 79-101 63-85 (110)
73 1wf5_A Sidekick 2 protein; FNI 29.7 53 0.0018 21.6 3.6 23 79-101 74-96 (121)
74 2edy_A Receptor-type tyrosine- 29.1 20 0.0007 23.0 1.3 21 5-25 64-84 (103)
75 2dm4_A Sortilin-related recept 29.0 54 0.0018 21.2 3.5 22 80-101 62-83 (108)
76 1x5h_A Neogenin; RGM binding, 28.4 32 0.0011 23.2 2.3 22 4-25 76-97 (132)
77 2e3v_A Neural cell adhesion mo 27.9 57 0.0019 22.0 3.5 23 79-101 65-87 (122)
78 1x5i_A Neogenin; RGM binding, 27.7 29 0.00098 23.8 1.9 19 5-23 81-99 (126)
79 3p4l_A Neogenin; iron homeosta 27.6 1.7E+02 0.0059 21.0 12.2 22 80-101 165-186 (211)
80 1x5l_A Ephrin type-A receptor 27.5 47 0.0016 21.5 2.9 22 80-101 65-86 (111)
81 2ed9_A Netrin receptor DCC; tu 27.2 36 0.0012 22.7 2.3 20 4-23 84-103 (124)
82 2vkw_A Neural cell adhesion mo 26.0 1.8E+02 0.0063 20.8 11.2 21 81-101 165-185 (209)
83 1uem_A KIAA1568 protein; immun 26.0 66 0.0022 21.0 3.5 23 79-101 70-92 (117)
84 1wfu_A Unnamed protein product 26.0 70 0.0024 22.1 3.7 23 80-102 74-96 (120)
85 1x3d_A Fibronectin type-III do 25.6 44 0.0015 22.1 2.5 19 5-23 73-91 (118)
86 2dlh_A Receptor-type tyrosine- 25.1 52 0.0018 21.5 2.9 24 79-102 74-97 (121)
87 2ed7_A Netrin receptor DCC; tu 24.2 34 0.0012 22.5 1.7 22 4-25 73-94 (119)
88 1wk0_A KIAA0970 protein; fibro 23.7 46 0.0016 23.8 2.4 21 5-25 82-102 (137)
89 3k2i_A Acyl-coenzyme A thioest 23.6 74 0.0025 26.4 4.1 30 4-33 19-48 (422)
90 2crm_A Fibronectin type-III do 23.5 1.6E+02 0.0054 19.2 6.4 23 79-101 73-95 (120)
91 3pjl_A 34 kDa membrane antigen 23.3 2.7E+02 0.0091 21.7 7.6 80 15-106 93-177 (212)
92 3t1w_A Four-domain fibronectin 23.1 2.8E+02 0.0095 21.8 11.3 23 80-102 240-262 (375)
93 3s9d_B Interferon alpha/beta r 22.9 1E+02 0.0036 23.5 4.5 25 81-105 160-184 (199)
94 1x5y_A Myosin binding protein 22.8 1.6E+02 0.0054 18.9 6.6 23 79-101 64-86 (111)
95 2ic2_A CG9211-PA, GH03927P; IH 22.4 65 0.0022 21.7 3.0 21 81-101 71-91 (115)
96 2crz_A Fibronectin type-III do 22.2 58 0.002 21.2 2.6 23 79-101 63-85 (110)
97 2dju_A Receptor-type tyrosine- 21.7 1.6E+02 0.0054 18.5 7.5 23 79-101 59-81 (106)
98 1k85_A Chitinase A1; fibronect 21.7 92 0.0031 19.3 3.4 22 80-101 50-71 (88)
99 2ww6_A Fibritin, T4 fibritin; 21.4 70 0.0024 16.6 2.1 18 102-119 7-24 (27)
100 3r8q_A Fibronectin; heparin, F 21.3 2.7E+02 0.0092 21.0 10.6 24 79-102 253-276 (290)
101 3lqm_A Interleukin-10 receptor 21.2 1.2E+02 0.004 22.4 4.4 26 79-104 153-178 (201)
102 2dbj_A Proto-oncogene tyrosine 21.2 45 0.0016 22.4 1.9 19 5-23 79-97 (124)
103 1xzw_A Purple acid phosphatase 21.0 1.2E+02 0.004 25.4 4.9 18 5-22 87-104 (426)
104 2qbw_A PDZ-fibronectin fusion 20.9 84 0.0029 23.1 3.5 21 81-101 157-177 (195)
105 1zlg_A Anosmin 1; insulin-like 20.8 4.4E+02 0.015 23.3 10.1 22 80-101 593-614 (680)
No 1
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=100.00 E-value=3.6e-41 Score=269.15 Aligned_cols=136 Identities=61% Similarity=1.001 Sum_probs=123.8
Q ss_pred eeeeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEecc
Q psy16661 42 QMKFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGK 120 (190)
Q Consensus 42 ~~k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~ 120 (190)
..++++...+-|.+++-+ .++ ...+.||+|||.++++++||||++.|++.|+|+++|++||+|++|+|.++|+
T Consensus 4 ~i~V~L~~~~LW~~F~~~~tEM------IiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gk 77 (193)
T 1h6f_A 4 DPKVHLEAKELWDQFHKRGTEM------VITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGK 77 (193)
T ss_dssp CCEEEETTHHHHHHHHHHCCEE------ECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEECCHHHHHhhCcccceE------EEecCCcccCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcc
Confidence 456677777778777753 343 3467999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661 121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK 183 (190)
Q Consensus 121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p 183 (190)
+|++.+.++|+|||||++|++||+++|+|++||||||..+++|+|+|+|||||+|++.|.+..
T Consensus 78 ae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~ 140 (193)
T 1h6f_A 78 ADPEMPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAN 140 (193)
T ss_dssp CCCCCCCCCEECTTCSEEHHHHTTSCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCS
T ss_pred cCCCCCcceEecCCCcccHHHHhhCCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcC
Confidence 999999999999999999999999999999999999999998999999999999999988754
No 2
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=100.00 E-value=5.4e-41 Score=269.87 Aligned_cols=136 Identities=46% Similarity=0.796 Sum_probs=120.9
Q ss_pred eeeeEeeCccccceEEE-eeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEecc
Q psy16661 42 QMKFRVSGLDAKAKYIL-LLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGK 120 (190)
Q Consensus 42 ~~k~~vsG~dp~ak~~~-~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~ 120 (190)
..++++...+-|.+++- ..++. ..+.||+|||.++++++||||++.|+|.|+|+++|++||+|++|+|.++|+
T Consensus 5 ~i~V~L~~~~LW~~F~~~~tEMI------iTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gk 78 (203)
T 2x6u_A 5 GIKVFLHERELWLKFHEVGTEMI------ITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGK 78 (203)
T ss_dssp CCEEEETTHHHHHHHHHHCCEEE------CBSSCEECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCEEEECCHHHHHhcCcCCceEE------EecCCcccCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcc
Confidence 35667777777777773 23444 468999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCC
Q psy16661 121 ADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDK 183 (190)
Q Consensus 121 ~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p 183 (190)
+|+..+.++|+|||||++|++||+++|+|++||||||..++.|+|+|+|||||+|++.|.+..
T Consensus 79 ae~~~p~r~y~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~ 141 (203)
T 2x6u_A 79 AEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKAD 141 (203)
T ss_dssp CCCC---CCEECTTCSEEHHHHHHSCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECC
T ss_pred cCCCCCcceEECCCCccchHHHhhCCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeC
Confidence 999999999999999999999999999999999999999988999999999999999999864
No 3
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=100.00 E-value=3e-40 Score=261.85 Aligned_cols=134 Identities=37% Similarity=0.666 Sum_probs=119.9
Q ss_pred eeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeeeeCCeeeEeccCC
Q psy16661 44 KFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD 122 (190)
Q Consensus 44 k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e 122 (190)
++++...+-|.+++-+ .++. ..+.||+|||.++++++||||++.|++.|+|+++|++||+|++|+|+++|++|
T Consensus 3 ~V~L~~~~LW~~F~~~~tEMI------iTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae 76 (184)
T 1xbr_A 3 KVSLEERDLWTRFKELTNEMI------VTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE 76 (184)
T ss_dssp EEEETTHHHHHHHHHHCCEEE------CBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCC
T ss_pred EEEEcCHHHHHhhcccCcEEE------EecCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccC
Confidence 4566666677777743 2333 46889999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCC
Q psy16661 123 PEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKT 184 (190)
Q Consensus 123 ~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~ 184 (190)
+..+.++|+|||||++|++||+++|+|++||||||.. +.|+|+|+|||||+|++.|.+...
T Consensus 77 ~~~p~r~~~Hpdsp~~G~~WM~~~VsF~klKlTNn~~-~~~~i~L~SmHKY~PrlhI~~~~~ 137 (184)
T 1xbr_A 77 PQAPSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMN-GGGQIMLNSLHKYEPRIHIVRVGG 137 (184)
T ss_dssp CCCCCCCEECTTCSEEHHHHHHSCEECTTCEEESSCC-TTTCEECCSSSEEEEEEEEEEESS
T ss_pred CCCCcceEECCCCchhHHHHhhCCceeccccccccCC-CCCeEEeccCceEEEEEEEEEeCC
Confidence 9999999999999999999999999999999999964 458999999999999999988653
No 4
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.9e-40 Score=262.92 Aligned_cols=137 Identities=40% Similarity=0.734 Sum_probs=123.3
Q ss_pred eeeeEeeCccccceEEEe-eeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEEEcCCceeee--eCCeeeEe
Q psy16661 42 QMKFRVSGLDAKAKYILL-LDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKF--HNSRWMVA 118 (190)
Q Consensus 42 ~~k~~vsG~dp~ak~~~~-~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~~~d~~ry~~--~~~~w~~~ 118 (190)
..++++...+-|.+++-+ .+ +..++.||||||.|+++|+||||++.|+|.|+|+++|++||+| ++|+|.++
T Consensus 15 ~i~V~Le~~~LW~~Fh~~~tE------MIITK~GRrmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~ 88 (203)
T 4a04_A 15 GVSVQLEMKALWDEFNQLGTE------MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVA 88 (203)
T ss_dssp CCEEEETTHHHHHHHHHHCCE------EECCSSCEECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEE
T ss_pred CcEEEeCCHHHHHhhCcCCCe------EEEEeCCcccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeEC
Confidence 456666666778777743 33 4447899999999999999999999999999999999999987 69999999
Q ss_pred ccCCCCCCcceeecCCCCCchhHhhcCcceeeEEEeecCCCCCCCcEEcccccccccCCCcccCCC
Q psy16661 119 GKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASVDRIAGSNDLLLDKT 184 (190)
Q Consensus 119 g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~klKItnn~~~k~~~i~l~smhky~pv~~i~~~p~ 184 (190)
|++|+..+.++|+|||||++|++||+++|+|++||||||..+++|+|+|+|||||+|++.|.+...
T Consensus 89 gkae~~~p~r~~~Hpdsp~tG~~WM~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~ 154 (203)
T 4a04_A 89 GKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDP 154 (203)
T ss_dssp EECCCCCCCCCCBCTTCSEEHHHHHHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCC
T ss_pred CccCCCCCCceEEcCCCCcCHHHHhhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999987653
No 5
>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*
Probab=99.97 E-value=3.8e-32 Score=218.39 Aligned_cols=146 Identities=31% Similarity=0.389 Sum_probs=116.6
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||.++|+++|||+|+|++||||++++|.++++++.. .+.+.++|+|++.. +.+||.+.+.|.+
T Consensus 35 mFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gkae~~---~p~r~y~Hpdsp~t--G~~WM~~~VsF~k 109 (203)
T 2x6u_A 35 MFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPA---MPGRLYVHPDSPAT--GAHWMRQLVSFQK 109 (203)
T ss_dssp CSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC------CCEECTTCSEE--HHHHHHSCEECTT
T ss_pred cCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcccCCC---CCcceEECCCCccc--hHHHhhCCceeee
Confidence 899999999999999999999999999999999999999999988743 23588999999985 5668999999999
Q ss_pred eeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661 81 YKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL 152 (190)
Q Consensus 81 lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl 152 (190)
+|+|++.+|..+ +|+..|||+++|+.. . .+ ......+.|.+|++.|+++++||| ..+++|
T Consensus 110 lKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~------~---~~--~~~~~~~tf~FpeT~FiAVTaYQN-~~It~L 177 (203)
T 2x6u_A 110 LKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENN------G---FG--SKNTAFCTHVFPETAFIAVTSYQN-HKITQL 177 (203)
T ss_dssp CEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTS------C---SS--SSCCCEEEECCGGGCEEEESSCCS-HHHHHH
T ss_pred eeceeccCCccceEeecCCceEEEEEEEEEeCCcc------c---cC--cCccceEEEEcCCcEEEEEeeecc-hhhhhh
Confidence 999999877664 577777777776531 0 00 112235689999999999999999 899999
Q ss_pred EeecCCCCCCCc
Q psy16661 153 KLTNNISDKHGF 164 (190)
Q Consensus 153 KItnn~~~k~~~ 164 (190)
||.|||||| ||
T Consensus 178 Ki~~NPFAk-gF 188 (203)
T 2x6u_A 178 KIENNPFAK-GF 188 (203)
T ss_dssp HHHHC-------
T ss_pred hhccCCCcc-cc
Confidence 999999998 54
No 6
>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4
Probab=99.96 E-value=2.2e-31 Score=212.57 Aligned_cols=144 Identities=36% Similarity=0.439 Sum_probs=120.1
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||.++|+++|||+++|++||+|++++|.++++++.. .+.+.++|+|++.. +.+||.+.+.|.+
T Consensus 34 mFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gkae~~---~p~r~~~Hpdsp~t--G~~WM~~~VsF~k 108 (193)
T 1h6f_A 34 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPE---MPKRMYIHPDSPAT--GEQWMSKVVTFHK 108 (193)
T ss_dssp CSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC---CCCCCEECTTCSEE--HHHHTTSCEECTT
T ss_pred cCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcccCCC---CCcceEecCCCccc--HHHHhhCCcceee
Confidence 899999999999999999999999999999999999999999987742 24688899999985 5668999999999
Q ss_pred eeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661 81 YKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL 152 (190)
Q Consensus 81 lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl 152 (190)
+|+|++.+|.++ +|+..|||+++++. . ..+....+.|.+|++.|+++++||| ..+++|
T Consensus 109 lKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~------------~-~~~~~~~~tf~FpeT~FiAVTaYQN-~~It~L 174 (193)
T 1h6f_A 109 LKLTNNISDKHGFTILNSMHKYQPRFHIVRANDI------------L-KLPYSTFRTYLFPETEFIAVTAYQN-DKITQL 174 (193)
T ss_dssp CCEECCTTCCSCCEECCTTEEEEEEEEEECCSCG------------G-GGGGSCCEEEECGGGCEEEESSCSC-HHHHHH
T ss_pred eeeeccCCCCCCcEEecCCceEeeEEEEEEcCCc------------c-CCCCcceEEEECCCeEEEEEeccCc-hhhhhh
Confidence 999999876554 45555666555431 0 0111235789999999999999999 899999
Q ss_pred EeecCCCCCCCc
Q psy16661 153 KLTNNISDKHGF 164 (190)
Q Consensus 153 KItnn~~~k~~~ 164 (190)
||.+||||| ||
T Consensus 175 Ki~~NpFAk-gF 185 (193)
T 1h6f_A 175 KIDNNPFAK-GF 185 (193)
T ss_dssp HHHHCGGGG-GG
T ss_pred hhcCCCCCc-cc
Confidence 999999998 54
No 7
>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4
Probab=99.96 E-value=3.4e-31 Score=209.92 Aligned_cols=139 Identities=25% Similarity=0.287 Sum_probs=117.9
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceecccCccceeeeeEeeCccccceEEEeeeecccCccccccccccccce
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMFPA 80 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~ 80 (190)
|||.++|+|+||||.++|+++|||+++|++||||++++|.++++++... +.+.++|+|++.. +.+||.+.+.|.+
T Consensus 31 mFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae~~~---p~r~~~Hpdsp~~--G~~WM~~~VsF~k 105 (184)
T 1xbr_A 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQA---PSCVYIHPDSPNF--GAHWMKDPVSFSK 105 (184)
T ss_dssp CSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCCC---CCCCEECTTCSEE--HHHHHHSCEECTT
T ss_pred cCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccCCCC---CcceEECCCCchh--HHHHhhCCceecc
Confidence 8999999999999999999999999999999999999999999877432 3688899999985 5668999999999
Q ss_pred eeEEEeCCCCC--------CceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceeeEE
Q psy16661 81 YKVRVMGLDKK--------AKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFHKL 152 (190)
Q Consensus 81 lk~~i~GLdp~--------~~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~kl 152 (190)
+|+|++ ++.. .+|+..|||+++++. ....+.|.+|++.|+++++||| ..+++|
T Consensus 106 lKlTNn-~~~~~~i~L~SmHKY~PrlhI~~~~~~-----------------~~~~~tf~FpeT~FiAVTaYQN-~~It~L 166 (184)
T 1xbr_A 106 VKLTNK-MNGGGQIMLNSLHKYEPRIHIVRVGGT-----------------QRMITSHSFPETQFIAVTAYQN-EEITAL 166 (184)
T ss_dssp CEEESS-CCTTTCEECCSSSEEEEEEEEEEESSS-----------------SCCEEEEECGGGCEEEESSCCC-HHHHHH
T ss_pred cccccc-CCCCCeEEeccCceEEEEEEEEEeCCC-----------------cceEEEEECCCcEEEEEeccCC-hhHhhh
Confidence 999998 3433 456666666655431 1234689999999999999999 899999
Q ss_pred EeecCCCCCCCc
Q psy16661 153 KLTNNISDKHGF 164 (190)
Q Consensus 153 KItnn~~~k~~~ 164 (190)
||.+||||| ||
T Consensus 167 Ki~~NpFAk-gF 177 (184)
T 1xbr_A 167 KIKHNPFAK-AF 177 (184)
T ss_dssp HHHHCGGGH-HH
T ss_pred hhccCCCCc-cc
Confidence 999999998 43
No 8
>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}
Probab=99.96 E-value=1.4e-30 Score=209.45 Aligned_cols=147 Identities=24% Similarity=0.327 Sum_probs=119.1
Q ss_pred CCCccEEEEeCCCCCCceeEEEEEEEcCCcceec--ccCccceeeeeEeeCccccceEEEeeeecccCcccccccccccc
Q psy16661 1 MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKF--HNRQMFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRRMF 78 (190)
Q Consensus 1 mfp~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r~--~~~~w~p~~k~~vsG~dp~ak~~~~~d~~~~~~~r~~~~gr~~f 78 (190)
|||.++|+|+||||.++|+++|||+|+|++|||| ++++|.++++++.. .+.+.++|+|++.. +..||.+.+.|
T Consensus 45 mFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~gkae~~---~p~r~~~Hpdsp~t--G~~WM~~~VsF 119 (203)
T 4a04_A 45 MFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPA---TPGRVHYHPDSPAK--GAQWMKQIVSF 119 (203)
T ss_dssp CSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEEEECCCC---CCCCCCBCTTCSEE--HHHHHHSCEEE
T ss_pred cCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeECCccCCC---CCCceEEcCCCCcC--HHHHhhCccee
Confidence 8999999999999999999999999999999995 89999999987743 23577889999984 56699999999
Q ss_pred ceeeEEEeCCCCCC--------ceEEEEEEEEcCCceeeeeCCeeeEeccCCCCCCcceeecCCCCCchhHhhcCcceee
Q psy16661 79 PAYKVRVMGLDKKA--------KYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPDSPSTGDQWMQKVVSFH 150 (190)
Q Consensus 79 P~lk~~i~GLdp~~--------~Y~~~l~~~~~d~~ry~~~~~~w~~~g~~e~~~~~~~~~hp~s~~tG~~wm~~~v~F~ 150 (190)
.++|+|++.+|.++ +|+..|||++++... + ....+....+.|.+|++.|+++++||| ..++
T Consensus 120 ~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~-----~-----~~~~~~~~~~tf~FpeT~FiAVTaYQN-~~It 188 (203)
T 4a04_A 120 DKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRK-----D-----SEKYAEENFKTFVFEETRFTAVTAYQN-HRIT 188 (203)
T ss_dssp CSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC------------------CCEEEEECGGGCEEEESSCCC-HHHH
T ss_pred eeeecccCccCcCCEEEEeeccccccEEEEEEcCCCc-----c-----cccccCCceEEEECCCcEEEeeCccCC-HHHH
Confidence 99999999866554 466666666665420 0 000112345789999999999999999 7999
Q ss_pred EEEeecCCCCCCCc
Q psy16661 151 KLKLTNNISDKHGF 164 (190)
Q Consensus 151 klKItnn~~~k~~~ 164 (190)
+|||.|||||| ||
T Consensus 189 ~LKi~~NPFAk-gF 201 (203)
T 4a04_A 189 QLKIASNPFAK-GF 201 (203)
T ss_dssp HHHHHHCGGGG-GG
T ss_pred HHHhccCCCCc-cc
Confidence 99999999998 54
No 9
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=54.23 E-value=35 Score=23.54 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=29.7
Q ss_pred cccceEEEeeeecccCccccccccccccceeeEEEeCCCCCCceEEEEEEE
Q psy16661 51 DAKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 51 dp~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
.|-..|.+.-.... ...||.....--..-.+++.||.|...|.+.|..+
T Consensus 36 sPI~~Y~I~yr~~~--~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~ 84 (114)
T 2kbg_A 36 APILEYIVKYRSKD--KEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA 84 (114)
T ss_dssp SCCSEEEEEEEESS--CCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred CcccEEEEEEEeCC--CCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence 45556666554432 12223322223345578999999999999887654
No 10
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.30 E-value=15 Score=24.33 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=16.5
Q ss_pred EEEEeCCCCCCceeEEEEEE
Q psy16661 6 KFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 6 ~~~~~gl~p~~~y~~~~d~~ 25 (190)
.+.|.||.|...|.+.+--+
T Consensus 62 ~~~l~~L~p~t~Y~~~V~A~ 81 (104)
T 2dkm_A 62 EVLLDGLEPGRDYEVSVQSL 81 (104)
T ss_dssp EEEEESCCTTCCEEEEEEEE
T ss_pred EEEECCCCCCCEEEEEEEEE
Confidence 78899999999998766544
No 11
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}
Probab=46.69 E-value=14 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.8
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
-.+.|.||.|...|.+.+=-
T Consensus 58 t~~~l~~L~p~t~Y~v~V~A 77 (97)
T 3qht_C 58 STATISGLSPGVDYTITVYA 77 (97)
T ss_dssp CEEEECSCCTTCEEEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEEE
Confidence 36789999999999866543
No 12
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=46.62 E-value=13 Score=24.48 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=18.1
Q ss_pred cEEEEeCCCCCCceeEEEEEEEcC
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVASD 28 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~~d 28 (190)
-.+.|.||.|...|.+.+--+-.+
T Consensus 60 t~~~l~~L~p~t~Y~~~V~A~~~~ 83 (101)
T 3k2m_C 60 STATISGLSPGVDYTITVYAWGED 83 (101)
T ss_dssp CEEEECSCCTTCEEEEEEEEEEEC
T ss_pred cEEEECCCCCCCEEEEEEEEEeCC
Confidence 367899999999998776544443
No 13
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}
Probab=46.34 E-value=14 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.1
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
-++.|.||.|...|.+.+--
T Consensus 55 t~~~l~gL~P~t~Y~~~V~A 74 (98)
T 3tes_A 55 RSYDLTGLKPGTEYTVSIYG 74 (98)
T ss_dssp SEEEECSCCTTCEEEEEEEE
T ss_pred CEEEECCCCCCCEEEEEEEE
Confidence 46889999999999876643
No 14
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=46.32 E-value=90 Score=23.34 Aligned_cols=81 Identities=23% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCceeEEEEEEEcCCcceecccCccceee--eeEeeCccccc-eEEEeeeecccCccccccccccccceeeEE--E----
Q psy16661 15 KAKYILLLDIVASDDFRYKFHNRQMFPQM--KFRVSGLDAKA-KYILLLDIVASDDFRYKFHNRRMFPAYKVR--V---- 85 (190)
Q Consensus 15 ~~~y~~~~d~~~~d~~r~r~~~~~w~p~~--k~~vsG~dp~a-k~~~~~d~~~~~~~r~~~~gr~~fP~lk~~--i---- 85 (190)
.++..|..||....++..=|-.+.|+|-+ +++++..+-.. .--.++-+++ .+=|..--. +
T Consensus 38 ~sdiHlEaDIha~~~n~~Gf~~G~wvPyL~v~y~i~~~~~~~v~~g~~mPMvA-----------~dGpHYG~NvkL~~~~ 106 (159)
T 3lzq_A 38 LADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKRGTLMPMVA-----------DDGPHYGANIAMEKDK 106 (159)
T ss_dssp GCSEEEEEEEEECTTCTTCCCTTCBCCSCEEEEEEEETTTCCEEEEECEEEEE-----------TTEEEEEEEECSTTCT
T ss_pred hCCeEEEEecccccCCCCcccCCcCCcCceEEEEEEeCCCCeEEEeecceeec-----------CCCCccccceeccccc
Confidence 56789999999999988889999999954 44555322211 1111111222 222222222 1
Q ss_pred eCCCCCCceEEEEEEEEcCCc
Q psy16661 86 MGLDKKAKYILLMDIVAADDC 106 (190)
Q Consensus 86 ~GLdp~~~Y~~~l~~~~~d~~ 106 (190)
.|++..+.|.+.++|.+...+
T Consensus 107 ~~~~G~G~Y~v~~~I~pP~~~ 127 (159)
T 3lzq_A 107 KGGFGVGNYELTFYISNPEKQ 127 (159)
T ss_dssp TCCCSSEEEEEEEEEECGGGG
T ss_pred cCCCCCccEEEEEEECCcccc
Confidence 234778999999999887654
No 15
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=45.69 E-value=15 Score=23.59 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.0
Q ss_pred ccEEEEeCCCCCCceeEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d 23 (190)
.-++.|.||.|...|.+.+-
T Consensus 54 ~~~~~l~~L~p~t~Y~~~V~ 73 (94)
T 1j8k_A 54 EDTAELQGLRPGSEYTVSVV 73 (94)
T ss_dssp CCEEEECSCCCCSEEEEEEE
T ss_pred ccEEEeCCCCCCCEEEEEEE
Confidence 34688999999999986553
No 16
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=45.30 E-value=16 Score=24.28 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.5
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
-.+.|.||.|...|.+.+=
T Consensus 64 ts~~l~~L~p~t~Y~~~V~ 82 (103)
T 3t04_D 64 STATISGLKPGVDYTITVY 82 (103)
T ss_dssp CEEEECSCCTTCCEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEE
Confidence 3678999999999986653
No 17
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.07 E-value=15 Score=25.33 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=15.9
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
-.+.|.||.|.+.|.+.|-
T Consensus 78 ~~~~v~gL~P~T~Y~f~V~ 96 (123)
T 2edd_A 78 LSYTATGLKPNTMYEFSVM 96 (123)
T ss_dssp SEEEEESCCTTCEEEEEEE
T ss_pred eEEEecCCCCCCEEEEEEE
Confidence 4688999999999997663
No 18
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=44.44 E-value=15 Score=24.35 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=17.6
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
-.+.|.||.|...|.+.+--+-
T Consensus 56 ~~~~l~~L~p~t~Y~~~V~A~~ 77 (104)
T 2rb8_A 56 NQYSIGNLKPDTEYEVSLISRR 77 (104)
T ss_dssp CEEEECSCCTTCEEEEEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEEEEe
Confidence 4688999999999997765543
No 19
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A
Probab=43.99 E-value=16 Score=24.60 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=16.1
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
-++.|.||.|...|.+.+=-
T Consensus 59 ~s~~l~~L~PgT~Y~V~v~a 78 (95)
T 2h41_A 59 TSVNIPDLLPGRKYIVNVYQ 78 (95)
T ss_dssp CEEEECSCCTTCEEEEEEEE
T ss_pred cEEEECCCCCCCEEEEEEEE
Confidence 46789999999999876543
No 20
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=43.73 E-value=16 Score=24.56 Aligned_cols=22 Identities=9% Similarity=0.196 Sum_probs=17.6
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
-++.|.||.|...|.+.+--+-
T Consensus 59 t~~~l~~L~P~t~Y~~~V~A~~ 80 (115)
T 2cuh_A 59 VDYPLHDLVLHTNYTATVRGLR 80 (115)
T ss_dssp SEEEECSCCSSSEEEEEEEEEE
T ss_pred cEEEEeCCCCCCEEEEEEEEEe
Confidence 4688999999999997765543
No 21
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A
Probab=42.63 E-value=30 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.2
Q ss_pred eeeEEEeCCCCCCceEEEEEEEEcCC
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVAADD 105 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~~d~ 105 (190)
.-.+++.||.|...|.+.|..+..+.
T Consensus 59 ~t~~~l~~L~p~t~Y~~~V~A~~~~~ 84 (101)
T 3k2m_C 59 SSTATISGLSPGVDYTITVYAWGEDS 84 (101)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEEECT
T ss_pred ccEEEECCCCCCCEEEEEEEEEeCCc
Confidence 45789999999999999988665543
No 22
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Probab=42.57 E-value=17 Score=23.47 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=17.0
Q ss_pred ccEEEEeCCCCCCceeEEEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d~~ 25 (190)
...+.|.||.|...|.+.+--+
T Consensus 54 ~~~~~i~~L~p~t~Y~~~V~A~ 75 (98)
T 3teu_A 54 STSVTITGLTPGVEYVVSVYAL 75 (98)
T ss_dssp CSEEEECSCCTTCEEEEEEEEE
T ss_pred cCEEEecCCCCCCEEEEEEEEE
Confidence 3468899999999998765443
No 23
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=42.55 E-value=17 Score=25.04 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.4
Q ss_pred EEEEeCCCCCCceeEEEEEE
Q psy16661 6 KFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 6 ~~~~~gl~p~~~y~~~~d~~ 25 (190)
++.|.||.|...|.+.|=-+
T Consensus 71 ~~~l~gL~PgT~Y~~~V~A~ 90 (112)
T 2cui_A 71 SAVLRDLRSGTLYSLTLYGL 90 (112)
T ss_dssp EEEECSCCTTCEEEEEEEEE
T ss_pred EEEeCCCCCCCEEEEEEEEE
Confidence 68899999999998766544
No 24
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.69 E-value=64 Score=20.92 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.7
Q ss_pred cceeeEEEeCCCCCCceEEEEEEE
Q psy16661 78 FPAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 78 fP~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
-....+++.||.|...|.+.|...
T Consensus 66 ~~~~~~~i~~L~p~t~Y~~~V~A~ 89 (114)
T 2ede_A 66 GDRLTHQIMDLNLDTMYYFRIQAR 89 (114)
T ss_dssp TTCCEEEECSCCSSCEEEEEEEEE
T ss_pred CCceEEEEcCCCCCCEEEEEEEEE
Confidence 345678999999999999888754
No 25
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.67 E-value=29 Score=22.83 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=18.1
Q ss_pred eEEEeCCCCCCceEEEEEEE
Q psy16661 82 KVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 82 k~~i~GLdp~~~Y~~~l~~~ 101 (190)
.+++.||.|...|.+.|..+
T Consensus 62 ~~~l~~L~p~t~Y~~~V~A~ 81 (104)
T 2dkm_A 62 EVLLDGLEPGRDYEVSVQSL 81 (104)
T ss_dssp EEEEESCCTTCCEEEEEEEE
T ss_pred EEEECCCCCCCEEEEEEEEE
Confidence 89999999999999988765
No 26
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=41.23 E-value=18 Score=23.98 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.1
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
-.+.|.||.|...|.+.+--+
T Consensus 59 ts~~l~~L~p~t~Y~~~V~A~ 79 (105)
T 2cum_A 59 TSHQLLGLFPSTSYNARLQAM 79 (105)
T ss_dssp SEEEECSCCTTCEEEEEEEEE
T ss_pred cEEEECCCCCCCEEEEEEEEE
Confidence 468899999999999776554
No 27
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=41.06 E-value=14 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=16.0
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
-.+.|.||.|.+.|.+.+-
T Consensus 68 ~~~~i~gL~P~T~Y~f~V~ 86 (113)
T 1x5j_A 68 LSYLVTGLKPNTLYEFSVM 86 (113)
T ss_dssp SEEEEESCCTTCEECCEEE
T ss_pred CEEEeCCCCCCcEEEEEEE
Confidence 3688999999999987663
No 28
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=40.24 E-value=18 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.7
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
..|+|+||.|+..|+..+-
T Consensus 61 nSYtI~GL~P~~~YE~qv~ 79 (98)
T 1oww_A 61 NSYTIKGLKPGVVYEGQLI 79 (98)
T ss_dssp CEEEECSCCSSEEEEEEEE
T ss_pred ceEEEecCCCCcEEEEEEE
Confidence 4789999999999986543
No 29
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}
Probab=40.10 E-value=33 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.2
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
....+++.||.|...|.+.|...-
T Consensus 53 ~~t~~~i~~L~p~t~Y~~~V~A~n 76 (100)
T 3b83_A 53 SITSLTLTNLEPNTTYEIRIVARN 76 (100)
T ss_dssp TEEEEEECSCCTTCEEEEEEEEEE
T ss_pred cceEEEECCCCCCCEEEEEEEEEe
Confidence 456899999999999999887653
No 30
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.99 E-value=21 Score=23.17 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=16.7
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 62 ~~~~i~~L~p~t~Y~~~V~A~ 82 (107)
T 2dn7_A 62 QHFTVTGLHKGTTYIFRLAAK 82 (107)
T ss_dssp CEEEEECCCTTCEEEEEEEEE
T ss_pred cEEEeCCCCCCCEEEEEEEEE
Confidence 478899999999998766543
No 31
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.86 E-value=21 Score=23.30 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=17.6
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
..+.|.||.|...|.+.+--.-
T Consensus 63 ~~~~l~~L~p~t~Y~~~V~A~n 84 (108)
T 2djs_A 63 NTARIDGLRPGMVYVVQVRART 84 (108)
T ss_dssp SEEEEESCCTTCEEEEEEEEEE
T ss_pred cEEEEcCCCCCCEEEEEEEEEe
Confidence 5688999999999997765443
No 32
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.56 E-value=23 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=16.2
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
..+.|.||.|...|.+.+--
T Consensus 64 ~~~~i~~L~p~t~Y~~~V~A 83 (109)
T 2e7h_A 64 NRAELRGLKRGASYLVQVRA 83 (109)
T ss_dssp SEEEEESCCTTSCEEEEEEE
T ss_pred CEEEECCCCCCCeEEEEEEE
Confidence 46889999999999876643
No 33
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=39.22 E-value=21 Score=23.67 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=16.0
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
-++.|.||+|...|.+.|--
T Consensus 65 ~~~~l~~L~p~t~Y~v~V~A 84 (102)
T 3n1f_C 65 QWHMIGHLQPETSYDIKMQC 84 (102)
T ss_dssp SEEEECSCCTTCEEEEEEEE
T ss_pred eEEECCCCCCCCEEEEEEEE
Confidence 36789999999999876643
No 34
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=39.05 E-value=81 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.2
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....++++||.|...|.+.+..+
T Consensus 66 ~~~~~~v~~L~p~t~Y~frV~A~ 88 (112)
T 1bpv_A 66 LENEFTVSGLTEDAAYEFRVIAK 88 (112)
T ss_dssp CSSEEEECSCCSSCCEEEEEEEE
T ss_pred ccCEEEECCCCCCCEEEEEEEEE
Confidence 45679999999999999887654
No 35
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens}
Probab=39.02 E-value=16 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=17.3
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
-.+.|.||.|...|.+.+--+
T Consensus 59 t~~~i~gL~PgT~Y~~~V~A~ 79 (104)
T 2dle_A 59 PRAVIPGLRSSTFYNITVCPV 79 (104)
T ss_dssp SEEECCSCCSSCEEEEEEEEE
T ss_pred CEEEECCCCCCCEEEEEEEEE
Confidence 368899999999999876655
No 36
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=38.98 E-value=24 Score=23.34 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=17.7
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
..+.|.||.|...|.+.|--.-
T Consensus 78 ~~~~i~~L~p~t~Y~~~V~A~n 99 (122)
T 1va9_A 78 EVYTLDNLKKFAQYGVVVQAFN 99 (122)
T ss_dssp EEEEEESCCSSCCEEEEEEEEE
T ss_pred eEEEeCCCCCCCEEEEEEEEEc
Confidence 5788999999999987765544
No 37
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=38.61 E-value=33 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=18.7
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
.-.+++.||.|...|.+.|..+
T Consensus 63 ~ts~~l~~L~p~t~Y~~~V~A~ 84 (103)
T 3t04_D 63 YSTATISGLKPGVDYTITVYAY 84 (103)
T ss_dssp CCEEEECSCCTTCCEEEEEEEE
T ss_pred cCEEEeCCCCCCCEEEEEEEEE
Confidence 4578999999999999887754
No 38
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Probab=38.45 E-value=21 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.6
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
-.+.|.||.|...|.+.+--+
T Consensus 57 ts~~l~gL~P~T~Y~v~V~A~ 77 (114)
T 3qwq_B 57 HTATISGLKPGVDYTITVYAV 77 (114)
T ss_dssp CEEEECSCCTTCEEEEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEEEE
Confidence 368899999999998776433
No 39
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A
Probab=38.26 E-value=31 Score=22.71 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=19.4
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
.-.+++.||.|...|.+.|..+-
T Consensus 55 ~~~~~l~~L~p~t~Y~~~V~A~~ 77 (104)
T 2rb8_A 55 ENQYSIGNLKPDTEYEVSLISRR 77 (104)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEE
T ss_pred cCEEEeCCCCCCCEEEEEEEEEe
Confidence 45789999999999999988654
No 40
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protei protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=38.15 E-value=1.4e+02 Score=23.02 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred CCCceeEEEEEEEcC-CcceecccCccceeeeeEeeC-c-c-ccceEEEeeeecccCccccccccccccceeeEEEeCCC
Q psy16661 14 AKAKYILLLDIVASD-DFRYKFHNRQMFPQMKFRVSG-L-D-AKAKYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLD 89 (190)
Q Consensus 14 p~~~y~~~~d~~~~d-~~r~r~~~~~w~p~~k~~vsG-~-d-p~ak~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLd 89 (190)
..+...|..||-... ++..=|-.+.|+|-+.++..- + + ....--.++-++. .+=|..--+|. |+
T Consensus 69 ~~sDiHLEADIha~~~~n~~Gf~~G~wvPyL~V~~~i~k~g~~~v~~gtfmPM~A-----------~DGPHYG~Nvk-L~ 136 (189)
T 2o6f_A 69 EEADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEKVQKVMFAPMNA-----------GDGPHYGANVK-FE 136 (189)
T ss_dssp TTCSEEEEEEEEECGGGGGGTCCTTSBCCSCEEEEEEEETTCCCCEEEECEEEEE-----------TTEEEEEEEEC-CT
T ss_pred ccCceEEEEEcchhhcCCccccccCCCcCceEEEEEEEeCCCceEEEEecccccc-----------CCCcccccccc-cC
Confidence 366788999999977 778789999999987765331 1 1 0111111111222 12233333333 55
Q ss_pred CC-CceEEEEEEEEcCCc
Q psy16661 90 KK-AKYILLMDIVAADDC 106 (190)
Q Consensus 90 p~-~~Y~~~l~~~~~d~~ 106 (190)
.. +.|.+.++|.+...+
T Consensus 137 G~~G~Y~vt~~I~pP~~~ 154 (189)
T 2o6f_A 137 EGLGTYKVRFEIAAPSHD 154 (189)
T ss_dssp TCSEEEEEEEEEECCCTT
T ss_pred CCCccEEEEEEEcCCCcc
Confidence 55 999999999877664
No 41
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=37.20 E-value=22 Score=24.50 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.8
Q ss_pred cEEEEeCCCCCCceeEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDI 24 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~ 24 (190)
-.+.|.||.|...|.+.+=-
T Consensus 82 t~~~l~gL~P~t~Y~~~V~A 101 (121)
T 2ocf_D 82 STATISGLKPGVDYTITVYA 101 (121)
T ss_dssp CEEEECCCCTTCEEEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEEE
Confidence 46789999999999866543
No 42
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=37.20 E-value=25 Score=23.47 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=17.5
Q ss_pred cEEEEeCCCCCCceeEEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIVA 26 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~~ 26 (190)
..+.|.||.|...|.+.+--.-
T Consensus 80 ~~~~i~~L~p~t~Y~~~V~A~n 101 (125)
T 1uen_A 80 THGMLPGLEPFSHYTLNVRVVN 101 (125)
T ss_dssp SEEEEESCCSSCEEEEEEEEEE
T ss_pred cEEEeCCCCCCCEEEEEEEEec
Confidence 4678999999999997765443
No 43
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=36.70 E-value=40 Score=22.31 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=11.3
Q ss_pred EEEEeCCCCCCceeEEEE
Q psy16661 6 KFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 6 ~~~~~gl~p~~~y~~~~d 23 (190)
.+.|.||.|.+.|.+.+-
T Consensus 68 ~~~l~~L~p~t~Y~~~VR 85 (109)
T 1uc6_A 68 AHTITDAYAGKEYIIQVA 85 (109)
T ss_dssp EEEETTCCSSSCEEEEEE
T ss_pred EEEEeCCCCCCEEEEEEE
Confidence 456666677666665544
No 44
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=36.48 E-value=83 Score=20.57 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=18.6
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...++|.||.|...|.+.|...
T Consensus 68 ~~~~~i~~L~p~t~Y~~~V~A~ 89 (114)
T 1x4y_A 68 RYWHSISHLQPETSYDIKMQCF 89 (114)
T ss_dssp CCEEEECSCCTTCEEEEEEEEE
T ss_pred EeEEEcCCCCCCCEEEEEEEEE
Confidence 4578999999999999988754
No 45
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.88 E-value=25 Score=23.81 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
-.+.|.||.|...|.+.+=-+
T Consensus 60 t~~~l~~L~p~T~Y~v~V~A~ 80 (108)
T 2ee3_A 60 TSAMLGPLSSSTTYTVRVTCL 80 (108)
T ss_dssp CEEEECSCCSSCEEEEEEEEE
T ss_pred CEEEcCCCCCCCEEEEEEEEE
Confidence 367899999999998765433
No 46
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.00 E-value=23 Score=22.99 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=16.7
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 61 ~~~~i~~L~p~t~Y~~~V~A~ 81 (106)
T 2ed8_A 61 LSYKLEGLKKFTEYSLRFLAY 81 (106)
T ss_dssp SCEEEESCCTTCEEEEEEEEE
T ss_pred cEEEECCCCCCCEEEEEEEEE
Confidence 467899999999999776543
No 47
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=34.79 E-value=37 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.0
Q ss_pred eeEEEeCCCCCCceEEEEEEEE
Q psy16661 81 YKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
-.+++.||.|...|.+.|.-+.
T Consensus 70 t~~~l~gL~PgT~Y~~~V~A~~ 91 (112)
T 2cui_A 70 HSAVLRDLRSGTLYSLTLYGLR 91 (112)
T ss_dssp CEEEECSCCTTCEEEEEEEEEC
T ss_pred CEEEeCCCCCCCEEEEEEEEEE
Confidence 4789999999999999988663
No 48
>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=34.35 E-value=40 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.0
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.|..+
T Consensus 63 ~~~~~v~~L~p~t~Y~frV~A~ 84 (109)
T 1x5x_A 63 DLAYTVKNLRRSTKYKFKVIAY 84 (109)
T ss_dssp CSEEEEESCCSSCEEEEEEEEE
T ss_pred ccEEEECCCCCCCEEEEEEEEE
Confidence 5689999999999999887754
No 49
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=34.23 E-value=26 Score=24.33 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=16.0
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
-.+.|.||.|.+.|.+.+-
T Consensus 75 ~~~~l~~L~p~T~Y~~~V~ 93 (120)
T 1ujt_A 75 RSAVLVNLKKGVTYEIKVR 93 (120)
T ss_dssp CEEEEESCCSSEEEEEEEE
T ss_pred CEEEECCCCCCCEEEEEEE
Confidence 4788999999999987664
No 50
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.15 E-value=30 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.452 Sum_probs=16.6
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 71 ~~~~l~~L~p~t~Y~~~V~A~ 91 (116)
T 2edb_A 71 RYYSIERLESSSHYVISLKAF 91 (116)
T ss_dssp CEEEECSCCSSSBEEEEEEEE
T ss_pred eEEEeCCCCCCCEEEEEEEEE
Confidence 468899999999998766433
No 51
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=34.14 E-value=27 Score=22.95 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=16.8
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 71 ~~~~i~~L~p~t~Y~~~V~A~ 91 (116)
T 1x5g_A 71 HSYTINGLKKYTEYSFRVVAY 91 (116)
T ss_dssp SEEEECSCCTTCEEEEEEEEE
T ss_pred ceEEEcCCCCCCEEEEEEEEE
Confidence 468899999999998766443
No 52
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=33.84 E-value=1.3e+02 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.8
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
...+++.||.|...|.+.|...-
T Consensus 167 ~~~~~i~~L~p~t~Y~~~V~A~~ 189 (203)
T 2gee_A 167 DNAVVLTNLLPGTEYVVSVSSVY 189 (203)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEE
T ss_pred cCEEEECCCCCCCEEEEEEEEec
Confidence 45788999999999998887543
No 53
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=33.55 E-value=41 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.4
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+...
T Consensus 64 ~~~~~~i~~L~p~t~Y~~rV~A~ 86 (105)
T 2haz_A 64 MEGIVTIVGLKPETTYAVRLAAL 86 (105)
T ss_dssp HHSEEEECSCCTTCEEEEEEEEE
T ss_pred CccEEEECCCCCCCEEEEEEEEE
Confidence 45688999999999999987754
No 54
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=33.47 E-value=26 Score=22.93 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=17.2
Q ss_pred ccEEEEeCCCCCCceeEEEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d~~ 25 (190)
...+.|.||.|...|.+.+--.
T Consensus 69 ~~~~~i~~L~p~t~Y~~~V~A~ 90 (115)
T 1x5z_A 69 GTSYRLQGLKPNSLYYFRLAAR 90 (115)
T ss_dssp SSEEEEECCCTTCEEEECEEEE
T ss_pred CcEEEECCCCCCCeEEEEEEEE
Confidence 4578899999999998766433
No 55
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=33.23 E-value=31 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=16.5
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 85 ~~~~i~~L~p~t~Y~~~V~A~ 105 (130)
T 1wfo_A 85 RQYTATGLKPESVYLFRITAQ 105 (130)
T ss_dssp CEEEEESCCSSSEEEEEEEEE
T ss_pred eEEEEcCCCCCCEEEEEEEEE
Confidence 468899999999998766443
No 56
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.16 E-value=1.1e+02 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.0
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
....+++.||.|...|.+.+...-
T Consensus 77 ~~~~~~i~~L~p~t~Y~~~V~A~n 100 (134)
T 2edx_A 77 EHSSWDLVGLEKWTEYRVWVRAHT 100 (134)
T ss_dssp TCSEEEEESCCTTCEEEEEEEEEE
T ss_pred CccEEEeCCCCCCCEEEEEEEEEc
Confidence 456899999999999999887653
No 57
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.03 E-value=35 Score=23.39 Aligned_cols=19 Identities=32% Similarity=0.744 Sum_probs=15.2
Q ss_pred ccEEEEeCCCCCCceeEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLL 22 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~ 22 (190)
...++|.||.|...|.+.+
T Consensus 79 ~~~~~v~gL~p~t~Y~frV 97 (127)
T 2dmk_A 79 QNHYTVHGLQSGTRYIFIV 97 (127)
T ss_dssp SSEEEEESCCSSCEEEEEE
T ss_pred CCeEEECCCCCCCEEEEEE
Confidence 3568899999999998654
No 58
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=32.98 E-value=1.5e+02 Score=22.10 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred CCceeEEEEEEEcCCcceecccCccceee--eeEeeCccccce-EEEeeeecccCccccccccccccceeeEEEeCCCCC
Q psy16661 15 KAKYILLLDIVASDDFRYKFHNRQMFPQM--KFRVSGLDAKAK-YILLLDIVASDDFRYKFHNRRMFPAYKVRVMGLDKK 91 (190)
Q Consensus 15 ~~~y~~~~d~~~~d~~r~r~~~~~w~p~~--k~~vsG~dp~ak-~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GLdp~ 91 (190)
.+...|..||-...++..=|-.+.|+|-+ +++++..+-... =-.++ -|.. .+=|..--+ -.|+..
T Consensus 40 ~sdiHLEAdI~a~e~n~~Gf~~G~~vPyL~v~y~i~~~~~~~v~~g~~m----------PMvA-~dGpHYG~N-vkL~G~ 107 (160)
T 3nrp_A 40 KADVHLEADIHAVEGNKNGFGAGEWIPYLTISYTLVNNDTGEKQEGTFM----------PMVA-SDGPHYGAN-IKMMGV 107 (160)
T ss_dssp GCSEEEEEEEEECTTCSSSCCTTCBCCSCEEEEEEEETTTCCEEEEECE----------EEEE-TTEEEEEEE-ECCCSS
T ss_pred cCCeEEEEEeeccccCcCcCcCCCCCCCceeEEEEEeCCCCeEEEeecc----------ceec-CCCCccccc-cCCCCC
Confidence 56789999999988888889999999954 445553322111 01111 1222 222222222 245667
Q ss_pred CceEEEEEEEEcCCc
Q psy16661 92 AKYILLMDIVAADDC 106 (190)
Q Consensus 92 ~~Y~~~l~~~~~d~~ 106 (190)
+.|.+.++|.+...+
T Consensus 108 G~Y~v~~~I~pPs~~ 122 (160)
T 3nrp_A 108 GNYKVTYHIEPPSKA 122 (160)
T ss_dssp EEEEEEEEEECGGGG
T ss_pred ccEEEEEEECCCccc
Confidence 999999999887654
No 59
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.69 E-value=42 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=19.4
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 78 ~~~~~~v~gL~p~t~Y~frV~A~ 100 (127)
T 2dmk_A 78 KQNHYTVHGLQSGTRYIFIVKAI 100 (127)
T ss_dssp CSSEEEEESCCSSCEEEEEEEEE
T ss_pred cCCeEEECCCCCCCEEEEEEEEE
Confidence 45678999999999999887754
No 60
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.61 E-value=45 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.6
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
...+++.||.|...|.+.|...-
T Consensus 72 ~~~~~i~~L~p~t~Y~~~V~A~n 94 (118)
T 2yrz_A 72 QTSVVVEDLLPNHSYVFRVRAQS 94 (118)
T ss_dssp CCEEEEESCCTTCEEEEEEEEEE
T ss_pred cCEEEeCCCCCCCEEEEEEEEEc
Confidence 56889999999999999887653
No 61
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.58 E-value=34 Score=22.69 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=15.7
Q ss_pred ccEEEEeCCCCCCceeEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d 23 (190)
...+.|.||.|...|.+.+-
T Consensus 73 ~~~~~i~~L~p~t~Y~~~V~ 92 (119)
T 1wfn_A 73 TLEYRVTGLTALTTYTIEVA 92 (119)
T ss_dssp CCEEEEESCCTTCEEEEEEE
T ss_pred ceEEEEcCCCCCCEEEEEEE
Confidence 35688999999999986553
No 62
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.37 E-value=15 Score=24.29 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.6
Q ss_pred cEEEEeCCCCCCceeEEE
Q psy16661 5 MKFRVSGLDAKAKYILLL 22 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~ 22 (190)
-.+.|.||.|...|.+.+
T Consensus 61 ~~~~l~~L~p~t~Y~~~V 78 (105)
T 2ekj_A 61 SHVTLPDLQAATKYRVLV 78 (105)
T ss_dssp SEEEECSCCSSCCCBCBB
T ss_pred CEEEeCCCCCCCEEEEEE
Confidence 468899999999998543
No 63
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.30 E-value=48 Score=21.62 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=19.1
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.|...
T Consensus 59 ~~~~~~v~~L~p~t~Y~frV~A~ 81 (106)
T 1x4x_A 59 PGLSYEIKGLSPATTYYCRVQAL 81 (106)
T ss_dssp SCSEEEEESCCSSCEEEEEEEEE
T ss_pred CcceEEEcCCCCCCEEEEEEEEE
Confidence 34678999999999999887754
No 64
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=31.81 E-value=42 Score=22.18 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=17.2
Q ss_pred EEEeCCCCCCceEEEEEEE
Q psy16661 83 VRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 83 ~~i~GLdp~~~Y~~~l~~~ 101 (190)
++|.||.|...|.+.|...
T Consensus 64 ~~i~~L~p~t~Y~f~V~A~ 82 (107)
T 1x5a_A 64 VLLTKLQPDTTYIVRVRTL 82 (107)
T ss_dssp EEEESCCSSCEEEEEEEEE
T ss_pred EEECCCCCCCEEEEEEEEE
Confidence 8999999999999988754
No 65
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=31.70 E-value=45 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.6
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.|...
T Consensus 73 ~~~~~~i~~L~p~t~Y~~~V~A~ 95 (120)
T 1x5f_A 73 GEMQVTIQNLMPATVYIFRVMAQ 95 (120)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEE
T ss_pred CccEEEeCCCCCCCEEEEEEEEE
Confidence 36789999999999999887754
No 66
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.50 E-value=46 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.2
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.|...
T Consensus 72 ~~~~~~i~~L~p~t~Y~~~V~A~ 94 (119)
T 2ee2_A 72 QEYSARLENLLPDTQYFIEVGAC 94 (119)
T ss_dssp TCSEEEECSCCTTCEEEEEEEEE
T ss_pred CEeEEEECCCCCCCEEEEEEEEE
Confidence 34588999999999999988754
No 67
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=31.24 E-value=45 Score=22.83 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.8
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.|..+
T Consensus 81 ~t~~~l~gL~P~t~Y~~~V~A~ 102 (121)
T 2ocf_D 81 KSTATISGLKPGVDYTITVYAV 102 (121)
T ss_dssp CCEEEECCCCTTCEEEEEEEEE
T ss_pred cCEEEeCCCCCCCEEEEEEEEE
Confidence 4678999999999999987754
No 68
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=30.45 E-value=1.2e+02 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.2
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 74 ~~~~~~v~~L~p~t~Y~frV~A~ 96 (121)
T 1x4z_A 74 SRLSVEITGLEKGISYKFRVRAL 96 (121)
T ss_dssp TCCEEEEESCCTTCEEEEEEEEE
T ss_pred CcCEEEECCCCCCCEEEEEEEEE
Confidence 35678999999999999887754
No 69
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=30.26 E-value=1.8e+02 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.0
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
...+++.||.|...|.+.+....
T Consensus 159 ~~~~~i~~L~p~t~Y~~~V~A~n 181 (283)
T 1tdq_A 159 TTKTTLTDLVPGTEYGVGISAVM 181 (283)
T ss_dssp EEEEEECSCCTTCEEEEEEEEEE
T ss_pred cceEEEecCCCCCEEEEEEEEEe
Confidence 67789999999999999988764
No 70
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=29.98 E-value=2e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=20.5
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEEc
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVAA 103 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~~ 103 (190)
....++++||.|...|.+.+...-.
T Consensus 148 ~~~~~~i~~L~p~t~Y~~~V~a~~~ 172 (375)
T 3t1w_A 148 SVGYYTVTGLEPGIDYDISVITLIN 172 (375)
T ss_dssp TCCEEEEECCCTTCEEEEEEEEEET
T ss_pred CcceEEEeCCCCCCEEEEEEEEEeC
Confidence 4567899999999999999886643
No 71
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.91 E-value=1.1e+02 Score=19.62 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.5
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 63 ~~~~~~v~~L~p~t~Y~frV~A~ 85 (110)
T 2yuw_A 63 DKTKFTITGLPTDAKIFVRVKAV 85 (110)
T ss_dssp CSSEEEECSCCTTCEEEEEEEEE
T ss_pred ccCEEEECCCCCCCEEEEEEEEE
Confidence 46689999999999999887754
No 72
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.81 E-value=47 Score=21.97 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=19.1
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+...
T Consensus 63 ~~~~~~v~~L~p~t~Y~frV~A~ 85 (110)
T 2db8_A 63 KETMCTVDGLHFNSTYNARVKAF 85 (110)
T ss_dssp SCSCEEEECCCSSSCCEEEEEEE
T ss_pred CcCEEEECCCCCCCEEEEEEEEE
Confidence 45678999999999999887654
No 73
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=29.73 E-value=53 Score=21.61 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.4
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 74 ~~~~~~v~~L~p~t~Y~frV~A~ 96 (121)
T 1wf5_A 74 KATSVTVKGLVPARSYQFRLCAV 96 (121)
T ss_dssp TCCEEEEESCCTTCEEEEEEEEE
T ss_pred CccEEEECCcCCCCEEEEEEEEE
Confidence 45679999999999999888754
No 74
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.10 E-value=20 Score=22.98 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=16.0
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|...|.+.+--.
T Consensus 64 ~~~~i~~L~p~t~Y~~~V~A~ 84 (103)
T 2edy_A 64 TRFTLTGLKPDTTYDIKVRAW 84 (103)
T ss_dssp SCCEECSCCTTCCEEEECCEE
T ss_pred ceEEEcCCCCCCEEEEEEEEE
Confidence 457889999999998765433
No 75
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=28.96 E-value=54 Score=21.24 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.9
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.|...
T Consensus 62 ~~~~~l~~L~p~t~Y~~~V~A~ 83 (108)
T 2dm4_A 62 SNFTEIKNLLVNTLYTVRVAAV 83 (108)
T ss_dssp SSEEEECSCCSSCEEEEEEEEE
T ss_pred ccEEEeCCCCCCCEEEEEEEEE
Confidence 4588999999999999988765
No 76
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=28.41 E-value=32 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.3
Q ss_pred ccEEEEeCCCCCCceeEEEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d~~ 25 (190)
...+.|.||.|...|.+.|--.
T Consensus 76 ~~~~~i~~L~p~t~Y~~~V~A~ 97 (132)
T 1x5h_A 76 QLSQLIEGLDRGTEYNFRVAAL 97 (132)
T ss_dssp CCEEEEECCCSSCEEEEECEEE
T ss_pred ccEEEeCCCCCCCEEEEEEEEE
Confidence 3578899999999998765444
No 77
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}
Probab=27.87 E-value=57 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.6
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.|...
T Consensus 65 ~~~~~~i~~L~p~t~Y~~rV~A~ 87 (122)
T 2e3v_A 65 MEGIVTIVGLKPETTYAVRLAAL 87 (122)
T ss_dssp TTTEEEECSCCTTCEEEEEEEEE
T ss_pred ccceEEeCCCCCCCEEEEEEEEE
Confidence 35678999999999999988755
No 78
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=27.70 E-value=29 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=15.4
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
..+.|.||.|...|.+.|-
T Consensus 81 ~~~~i~~L~p~t~Y~~~V~ 99 (126)
T 1x5i_A 81 RYYTIENLDPSSHYVITLK 99 (126)
T ss_dssp CEEEECSCCSSCEECCEEE
T ss_pred eEEEEeCCCCCCEEEEEEE
Confidence 4688999999999986553
No 79
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=27.60 E-value=1.7e+02 Score=20.99 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=17.9
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.|...
T Consensus 165 ~~~~~i~~L~p~t~Y~~~V~A~ 186 (211)
T 3p4l_A 165 RLTHQIQELTLDTPYYFKIQAR 186 (211)
T ss_dssp CSEEEECCCCTTCEEEEEEEEE
T ss_pred eeEEEEcCCCCCCEEEEEEEEE
Confidence 4568889999999999887754
No 80
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=27.46 E-value=47 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.9
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.+...
T Consensus 65 ~~~~~i~~L~p~t~Y~~~V~A~ 86 (111)
T 1x5l_A 65 TTRATVSGLKPGTRYVFQVRAR 86 (111)
T ss_dssp SSEEEECSCCTTCEEEECEEEE
T ss_pred CCEEEEcCCCCCCEEEEEEEEE
Confidence 5678999999999999888755
No 81
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.18 E-value=36 Score=22.66 Aligned_cols=20 Identities=15% Similarity=0.461 Sum_probs=15.6
Q ss_pred ccEEEEeCCCCCCceeEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d 23 (190)
...+.|.||.|...|.+.+-
T Consensus 84 ~~~~~i~~L~p~t~Y~~~V~ 103 (124)
T 2ed9_A 84 NLWYLFTGLEKGSQYSFQVS 103 (124)
T ss_dssp CSEEEEECCCSSCEEEECEE
T ss_pred cCEEEEcCCCCCCEEEEEEE
Confidence 34688999999999986553
No 82
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=26.05 E-value=1.8e+02 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.9
Q ss_pred eeEEEeCCCCCCceEEEEEEE
Q psy16661 81 YKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
..+++.||.|...|.+.|...
T Consensus 165 ~~~~i~~L~p~t~Y~~~V~A~ 185 (209)
T 2vkw_A 165 DHVMLKSLDWNAEYEVYVVAE 185 (209)
T ss_dssp CEEEECSCCTTCEEEEEEEEE
T ss_pred cEEEecCCCCCCEEEEEEEEE
Confidence 578899999999999887754
No 83
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=26.05 E-value=66 Score=20.98 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=19.1
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 70 ~~~~~~i~~L~p~t~Y~frV~A~ 92 (117)
T 1uem_A 70 KTTLYTVRGLRPNTIYLFMVRAI 92 (117)
T ss_dssp CSSEEEECSCCTTCEEEEEEEEE
T ss_pred CcCEEEECCCCCCCEEEEEEEEE
Confidence 35578999999999999887754
No 84
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=26.03 E-value=70 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.4
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
...++|.||.|...|.+.|..+-
T Consensus 74 ~t~~~v~gL~p~t~Y~frV~A~n 96 (120)
T 1wfu_A 74 ATRHVVEGLEPRTLYKFRLKVTS 96 (120)
T ss_dssp CSEEEEESCCTTCEEEEEEEEEC
T ss_pred ccEEEECCCCCCCEEEEEEEEEC
Confidence 45789999999999999888653
No 85
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=25.57 E-value=44 Score=22.06 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.8
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
..+.|.||.|...|.+.+-
T Consensus 73 ~~~~v~~L~p~t~Y~frV~ 91 (118)
T 1x3d_A 73 KQFKITKLSPAMGCKFRLS 91 (118)
T ss_dssp SEEEEESCCTTCEEEEECC
T ss_pred cEEEeCCCCCCCEEEEEEE
Confidence 4678899999999976553
No 86
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.14 E-value=52 Score=21.53 Aligned_cols=24 Identities=8% Similarity=0.020 Sum_probs=20.1
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
....+++.||.|...|.+.|...-
T Consensus 74 ~~~~~~i~~L~p~t~Y~~~V~A~n 97 (121)
T 2dlh_A 74 DSQITTIGNLVPQKTYSVKVLAFT 97 (121)
T ss_dssp SCSEECCBSCCSSCEEEEEEEEEE
T ss_pred CceEEEecCCCCCCEEEEEEEEEe
Confidence 566789999999999999887653
No 87
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.23 E-value=34 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.7
Q ss_pred ccEEEEeCCCCCCceeEEEEEE
Q psy16661 4 QMKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d~~ 25 (190)
...+.|.||.|...|.+.+--+
T Consensus 73 ~~~~~i~~L~p~t~Y~~~V~A~ 94 (119)
T 2ed7_A 73 SLQLTVGNLKPEAMYTFRVVAY 94 (119)
T ss_dssp CCEEEECSCCSSSEEEECCEEE
T ss_pred ceEEEeCCCCCCCEEEEEEEEE
Confidence 3578899999999998655443
No 88
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.68 E-value=46 Score=23.83 Aligned_cols=21 Identities=10% Similarity=0.165 Sum_probs=16.8
Q ss_pred cEEEEeCCCCCCceeEEEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLDIV 25 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d~~ 25 (190)
..+.|.||.|.+.|.+.+-..
T Consensus 82 ts~~v~~L~P~T~Y~~rV~A~ 102 (137)
T 1wk0_A 82 TNITLNDLKPAMDYHAKVQAE 102 (137)
T ss_dssp SEEEECSCCTTCEECEEEEEE
T ss_pred cEEEEcCCCCCCEEEEEEEEE
Confidence 367899999999999776544
No 89
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens}
Probab=23.63 E-value=74 Score=26.37 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=23.7
Q ss_pred ccEEEEeCCCCCCceeEEEEEEEcCCccee
Q psy16661 4 QMKFRVSGLDAKAKYILLLDIVASDDFRYK 33 (190)
Q Consensus 4 ~~~~~~~gl~p~~~y~~~~d~~~~d~~r~r 33 (190)
.++++|+||.|.+.+.+.+-+.-.++..|+
T Consensus 19 ~~~i~~~gl~~~~~~~~~~~~~~~~~~~~~ 48 (422)
T 3k2i_A 19 PVRIAVRGLAPEQRVTLRASLRDEKGALFR 48 (422)
T ss_dssp CCEEEEESCCTTCEEEEEEEEECTTSCEEE
T ss_pred ceEEEEeCCCCCCeEEEEEEEEeCCCCEEE
Confidence 368999999999999988877765554444
No 90
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.51 E-value=1.6e+02 Score=19.20 Aligned_cols=23 Identities=13% Similarity=0.028 Sum_probs=19.6
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.|..+
T Consensus 73 ~~~~~~v~~L~p~t~Y~frV~A~ 95 (120)
T 2crm_A 73 ATREHLCDRLNPGCFYRLRVYCI 95 (120)
T ss_dssp SCSEEEECSCCTTSCEEEEEEEE
T ss_pred cccEEEECCCCCCCEEEEEEEEE
Confidence 46789999999999999888754
No 91
>3pjl_A 34 kDa membrane antigen; IG fold, metal binding, human lactoferrin, membrane protein; 1.70A {Treponema pallidum} PDB: 3pjn_A
Probab=23.31 E-value=2.7e+02 Score=21.72 Aligned_cols=80 Identities=14% Similarity=0.184 Sum_probs=46.7
Q ss_pred CCceeEEEEEEEcC-CcceecccCccceee--eeEeeCccccc-eEEEeeeecccCccccccccccccceeeEEEeCC-C
Q psy16661 15 KAKYILLLDIVASD-DFRYKFHNRQMFPQM--KFRVSGLDAKA-KYILLLDIVASDDFRYKFHNRRMFPAYKVRVMGL-D 89 (190)
Q Consensus 15 ~~~y~~~~d~~~~d-~~r~r~~~~~w~p~~--k~~vsG~dp~a-k~~~~~d~~~~~~~r~~~~gr~~fP~lk~~i~GL-d 89 (190)
.++..|..||.... +...=|-.+.|+|-+ +++|+.++-.. .=-.+ +-|. ..+=|..--+| .| +
T Consensus 93 ~sDiHLEADIhA~~~~n~~Gf~~G~wvPYLtV~y~Itk~d~~~v~eGtf----------mPMv-AsDGPHYGdNV-KL~~ 160 (212)
T 3pjl_A 93 EADCHIEADIHANEAGKDLGYGVGDFVPYLRVVAFLQKHGSEKVQKVMF----------APMN-AGDGPHYGANV-KFEE 160 (212)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTCBCCSCEEEEEEEETTCCCCEEEEC----------EEEE-ETTEEEEEEEE-CCTT
T ss_pred hCCeEEEEeccccccCCcccccCCCCCcCceeEEEEEeCCCCeEEEeec----------cccc-cCcCCccceee-ccCC
Confidence 46799999999985 466779999999954 44555432211 10001 1122 12223333222 34 4
Q ss_pred CCCceEEEEEEEEcCCc
Q psy16661 90 KKAKYILLMDIVAADDC 106 (190)
Q Consensus 90 p~~~Y~~~l~~~~~d~~ 106 (190)
..+.|.+.++|.+....
T Consensus 161 G~G~Y~vt~~I~pPs~~ 177 (212)
T 3pjl_A 161 GLGTYKVRFEIAAPSHD 177 (212)
T ss_dssp CSEEEEEEEEEECCCTT
T ss_pred CCccEEEEEEEcCCCcC
Confidence 57899999998876554
No 92
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=23.07 E-value=2.8e+02 Score=21.83 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.6
Q ss_pred eeeEEEeCCCCCCceEEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
...+++.||.|...|.+.+...-
T Consensus 240 ~~~~~i~~L~p~t~Y~~~V~A~~ 262 (375)
T 3t1w_A 240 DNAVVLTNLLPGTEYVVSVSSVY 262 (375)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEE
T ss_pred cCEEEeCCCCCCCEEEEEEEEEc
Confidence 36788999999999999988664
No 93
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2, ifnar2, SUB-complex of the interferon signaling complex; 2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B 2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Probab=22.87 E-value=1e+02 Score=23.46 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.0
Q ss_pred eeEEEeCCCCCCceEEEEEEEEcCC
Q psy16661 81 YKVRVMGLDKKAKYILLMDIVAADD 105 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~~~d~ 105 (190)
..+.|..|.|+..|++.+.+++..+
T Consensus 160 ~~~vi~~L~P~T~YCv~V~~~~~~~ 184 (199)
T 3s9d_B 160 FTYIIDKLIPNTNYCVSVYLEHSDE 184 (199)
T ss_dssp EEEEECSCCSSCEEEEEEEEEC---
T ss_pred ceEEEeccCCCCcEEEEEEEEeCCC
Confidence 4678889999999999998766554
No 94
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Probab=22.82 E-value=1.6e+02 Score=18.93 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=19.4
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 64 ~~~~~~v~~L~p~t~Y~frV~A~ 86 (111)
T 1x5y_A 64 ERCGFTVKDLPTGARILFRVVGV 86 (111)
T ss_dssp SSSEEEEECCCTTCCEEEEEEEE
T ss_pred cccEEEECCCCCCCEEEEEEEEE
Confidence 36688999999999999887754
No 95
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1
Probab=22.39 E-value=65 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.7
Q ss_pred eeEEEeCCCCCCceEEEEEEE
Q psy16661 81 YKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
..+++.||.|...|.+.|..+
T Consensus 71 ~~~~v~~L~p~t~Y~FRV~A~ 91 (115)
T 2ic2_A 71 FTASVTDLKPQHTYRFRILAV 91 (115)
T ss_dssp EEEEECSCCSSEEEEEEEEEE
T ss_pred eEEEeCCCCCCCEEEEEEEEE
Confidence 468899999999999887754
No 96
>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=22.23 E-value=58 Score=21.21 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=18.9
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+..+
T Consensus 63 ~~~~~~v~~L~p~t~Y~frV~A~ 85 (110)
T 2crz_A 63 SEVECTVSSLLPGKTYSFRLRAA 85 (110)
T ss_dssp SCSEEEEESCCTTCEEEECCEEE
T ss_pred CcEEEEECCcCCCCEEEEEEEEE
Confidence 35678999999999999887644
No 97
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.68 E-value=1.6e+02 Score=18.46 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=18.8
Q ss_pred ceeeEEEeCCCCCCceEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
....+++.||.|...|.+.+...
T Consensus 59 ~~~~~~i~~L~p~t~Y~~~V~A~ 81 (106)
T 2dju_A 59 ATTRYSIGGLSPFSEYAFRVLAV 81 (106)
T ss_dssp CSSEEEEESCCTTCEEEEEEEEE
T ss_pred CccEEEEeCCCCCcEEEEEEEEE
Confidence 35578999999999999887644
No 98
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=21.67 E-value=92 Score=19.33 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=18.4
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.+..+
T Consensus 50 ~~~~~~~~L~~~t~Y~~~V~A~ 71 (88)
T 1k85_A 50 GTTATISGLAADTSYTFTVKAK 71 (88)
T ss_dssp SSEEEECCCCSSCEEEEEEEEE
T ss_pred CCEEEeCCCCCCCEEEEEEEEE
Confidence 4578899999999999887754
No 99
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=21.43 E-value=70 Score=16.62 Aligned_cols=18 Identities=17% Similarity=0.355 Sum_probs=13.9
Q ss_pred EcCCceeeeeCCeeeEec
Q psy16661 102 AADDCRYKFHNSRWMVAG 119 (190)
Q Consensus 102 ~~d~~ry~~~~~~w~~~g 119 (190)
+.|..-|.-.+|.|++-.
T Consensus 7 P~Dg~~Yvr~dg~WV~l~ 24 (27)
T 2ww6_A 7 PRDAQAYVRKFGEWVLLS 24 (27)
T ss_dssp CSSSCEEEEETTEEEEGG
T ss_pred CcCcceeEEEcCeEEEcc
Confidence 467777888899998743
No 100
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=21.32 E-value=2.7e+02 Score=21.03 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=19.6
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEE
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVA 102 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~ 102 (190)
....+++.||.|...|.+.|...-
T Consensus 253 ~~~~~~i~~L~p~t~Y~~~V~A~~ 276 (290)
T 3r8q_A 253 GVTEATITGLEPGTEYTIYVIALK 276 (290)
T ss_dssp TCCEEEECSCCTTCEEEEEEEEEE
T ss_pred CccEEEECCCCCCCEEEEEEEEEe
Confidence 356788999999999999887653
No 101
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}
Probab=21.21 E-value=1.2e+02 Score=22.43 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=20.5
Q ss_pred ceeeEEEeCCCCCCceEEEEEEEEcC
Q psy16661 79 PAYKVRVMGLDKKAKYILLMDIVAAD 104 (190)
Q Consensus 79 P~lk~~i~GLdp~~~Y~~~l~~~~~d 104 (190)
+.-.+++.||+|...|++.+...-.+
T Consensus 153 ~~~~~~l~~L~p~t~Ycv~V~a~~~~ 178 (201)
T 3lqm_A 153 QYDFEVLRNLEPWTTYCVQVRGFLPD 178 (201)
T ss_dssp SSSEEEECSCCTTCEEEEEEEEEETT
T ss_pred cCceEEEecCCCCCcEEEEEEEEecc
Confidence 34467889999999999998876543
No 102
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.17 E-value=45 Score=22.41 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=14.7
Q ss_pred cEEEEeCCCCCCceeEEEE
Q psy16661 5 MKFRVSGLDAKAKYILLLD 23 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~d 23 (190)
..+.|.||.|...|.+.+-
T Consensus 79 ~~~~l~~L~p~t~Y~~~V~ 97 (124)
T 2dbj_A 79 SRARISVQVHNATCTVRIA 97 (124)
T ss_dssp SCEEEECCCSSSEEEECEE
T ss_pred ceEEecCCCCCCEEEEEEE
Confidence 3578899999999986553
No 103
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=21.04 E-value=1.2e+02 Score=25.41 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.0
Q ss_pred cEEEEeCCCCCCceeEEE
Q psy16661 5 MKFRVSGLDAKAKYILLL 22 (190)
Q Consensus 5 ~~~~~~gl~p~~~y~~~~ 22 (190)
.++.|.||+|.+.|.-.+
T Consensus 87 ~~v~l~gL~p~t~Y~Yrv 104 (426)
T 1xzw_A 87 HHCTIKDLEYDTKYYYRL 104 (426)
T ss_dssp EEEEECCCCTTCEEEEEE
T ss_pred EEEEECCCCCCCEEEEEE
Confidence 578899999999986433
No 104
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=20.92 E-value=84 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.4
Q ss_pred eeEEEeCCCCCCceEEEEEEE
Q psy16661 81 YKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 81 lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
..++++||.|...|.+.|...
T Consensus 157 t~~~l~gL~p~t~Y~~~V~A~ 177 (195)
T 2qbw_A 157 STATISGLKPGVDYTITVYAY 177 (195)
T ss_dssp SEEEECSCCTTCEEEEEEEEE
T ss_pred CEEEeCCCCCCCEEEEEEEEE
Confidence 678999999999999988754
No 105
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=20.79 E-value=4.4e+02 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.6
Q ss_pred eeeEEEeCCCCCCceEEEEEEE
Q psy16661 80 AYKVRVMGLDKKAKYILLMDIV 101 (190)
Q Consensus 80 ~lk~~i~GLdp~~~Y~~~l~~~ 101 (190)
...+++.||.|...|.+.|...
T Consensus 593 ~~~~~l~~L~p~t~Y~~~V~A~ 614 (680)
T 1zlg_A 593 HYVLTVPNLRPSTLYRLEVQVL 614 (680)
T ss_pred ccEEEecCCCCCceEEEEEEEE
Confidence 4578899999999999988754
Done!