RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16661
         (190 letters)



>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
           {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score =  139 bits (351), Expect = 9e-43
 Identities = 44/93 (47%), Positives = 62/93 (66%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP  KV + GLD  A Y +L+D VAAD+ R+K+ N  W+  GK +P+ P  +YIHPD
Sbjct: 29  RRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPD 88

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMS 167
           SP+ G  WM+  VSF K+KLTN ++     +++
Sbjct: 89  SPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLN 121



 Score = 57.6 bits (139), Expect = 3e-11
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP +K  +SGLD  A Y +LLD VA+D+ R+K+ N +
Sbjct: 31 MFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGE 68


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 184

 Score =  138 bits (350), Expect = 1e-42
 Identities = 82/96 (85%), Positives = 89/96 (92%)

Query: 75  RRMFPAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 134
           RRMFP +KVR  GLDKKAKYILLMDI+AADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD
Sbjct: 29  RRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEMPKRMYIHPD 88

Query: 135 SPSTGDQWMQKVVSFHKLKLTNNISDKHGFVMSASV 170
           SP+TG+QWM KVV+FHKLKLTNNISDKHGF +  S+
Sbjct: 89  SPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSM 124



 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 27/38 (71%), Positives = 31/38 (81%)

Query: 1  MFPQMKFRVSGLDAKAKYILLLDIVASDDFRYKFHNRQ 38
          MFP  K R SGLD KAKYILL+DI+A+DD RYKFHN +
Sbjct: 31 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSR 68


>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic
           core {Vaccinia virus [TaxId: 10245]}
          Length = 230

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 20/120 (16%)

Query: 29  DFRYKFHNRQMFPQMKFRVSGLDAKAKYIL-LLDIVASDDFRYKFHNRRM---------F 78
            F  K          +F V   +   K +L L D  + ++F +   + R           
Sbjct: 83  KFVGKDKVSH-----EFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQFGI 137

Query: 79  PAYKVRVMGLDKKAKYILLMDIVAADDCRYKFHNSRWMVAGKAD-----PEMPKRMYIHP 133
               +R  G++    Y    ++ +              +   A+     P + KR Y+  
Sbjct: 138 RIKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIKQTAEVVGHTPSISKRAYMAT 197


>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
           x100 [TaxId: 105351]}
          Length = 472

 Score = 24.7 bits (53), Expect = 8.5
 Identities = 8/33 (24%), Positives = 14/33 (42%)

Query: 137 STGDQWMQKVVSFHKLKLTNNISDKHGFVMSAS 169
           +T D W+    +  +  + NNI     +V  A 
Sbjct: 1   ATLDSWLSNEATVARTAILNNIGADGAWVSGAD 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 715,373
Number of extensions: 32087
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.6 bits)