Query psy16665
Match_columns 71
No_of_seqs 119 out of 1085
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 18:53:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569|consensus 99.4 7.2E-13 1.6E-17 84.3 4.3 68 2-71 323-390 (485)
2 KOG0254|consensus 99.2 7.6E-11 1.6E-15 75.1 6.8 70 2-71 347-417 (513)
3 PF00083 Sugar_tr: Sugar (and 98.0 1.1E-07 2.4E-12 59.3 -4.1 68 2-71 304-371 (451)
4 TIGR00887 2A0109 phosphate:H+ 98.0 2.6E-05 5.5E-10 49.8 6.1 32 3-34 354-385 (502)
5 PRK10077 xylE D-xylose transpo 97.8 0.00013 2.9E-09 45.8 6.5 60 3-69 325-384 (479)
6 TIGR00879 SP MFS transporter, 97.5 0.00077 1.7E-08 41.7 7.0 66 3-69 338-403 (481)
7 TIGR01299 synapt_SV2 synaptic 97.2 0.0012 2.7E-08 44.7 5.4 31 2-32 613-643 (742)
8 PRK10406 alpha-ketoglutarate t 96.9 0.0012 2.6E-08 41.5 3.3 30 3-32 82-111 (432)
9 TIGR00880 2_A_01_02 Multidrug 96.9 0.0086 1.9E-07 31.0 5.9 30 3-32 17-46 (141)
10 PRK10642 proline/glycine betai 96.8 0.0017 3.6E-08 41.6 3.3 31 3-33 76-106 (490)
11 TIGR00881 2A0104 phosphoglycer 96.8 0.0045 9.9E-08 37.3 4.9 32 2-33 48-79 (379)
12 PRK10077 xylE D-xylose transpo 96.8 0.0055 1.2E-07 38.6 5.4 30 3-32 74-103 (479)
13 TIGR00883 2A0106 metabolite-pr 96.8 0.0021 4.5E-08 38.9 3.4 30 3-32 54-83 (394)
14 PRK15075 citrate-proton sympor 96.8 0.0023 5.1E-08 40.2 3.7 30 3-32 75-104 (434)
15 TIGR00900 2A0121 H+ Antiporter 96.7 0.0082 1.8E-07 36.0 5.9 31 3-33 53-83 (365)
16 PRK05122 major facilitator sup 96.7 0.007 1.5E-07 37.4 5.3 29 3-31 70-98 (399)
17 PRK09952 shikimate transporter 96.7 0.0024 5.3E-08 40.3 3.2 30 3-32 83-112 (438)
18 TIGR00891 2A0112 putative sial 96.6 0.0086 1.9E-07 36.5 5.5 30 3-32 66-95 (405)
19 TIGR00898 2A0119 cation transp 96.5 0.0088 1.9E-07 38.1 5.2 30 3-32 146-175 (505)
20 PF05977 MFS_3: Transmembrane 96.5 0.011 2.3E-07 38.8 5.7 34 2-35 63-96 (524)
21 PRK11273 glpT sn-glycerol-3-ph 96.5 0.009 2E-07 37.8 5.2 31 3-33 82-112 (452)
22 PRK15034 nitrate/nitrite trans 96.5 0.015 3.3E-07 37.7 6.1 29 3-31 305-333 (462)
23 PRK09705 cynX putative cyanate 96.5 0.0046 9.9E-08 38.5 3.7 31 3-33 63-93 (393)
24 TIGR00887 2A0109 phosphate:H+ 96.5 0.0072 1.6E-07 38.8 4.7 30 3-32 75-104 (502)
25 TIGR00890 2A0111 Oxalate/Forma 96.5 0.0039 8.5E-08 37.5 3.2 30 3-32 57-86 (377)
26 TIGR00898 2A0119 cation transp 96.4 0.012 2.6E-07 37.5 5.4 30 3-32 374-403 (505)
27 TIGR00879 SP MFS transporter, 96.4 0.013 2.8E-07 36.3 5.2 30 3-32 90-119 (481)
28 cd06174 MFS The Major Facilita 96.4 0.01 2.2E-07 35.3 4.5 30 3-32 53-82 (352)
29 PRK03699 putative transporter; 96.3 0.015 3.2E-07 36.1 5.3 30 3-32 61-90 (394)
30 TIGR00886 2A0108 nitrite extru 96.3 0.0079 1.7E-07 36.5 3.9 30 3-32 56-85 (366)
31 PRK12382 putative transporter; 96.3 0.0066 1.4E-07 37.4 3.6 25 3-27 70-94 (392)
32 KOG0253|consensus 96.3 0.022 4.7E-07 36.9 5.8 32 2-33 399-430 (528)
33 PRK11102 bicyclomycin/multidru 96.3 0.022 4.8E-07 34.8 5.8 30 3-32 45-74 (377)
34 TIGR00895 2A0115 benzoate tran 96.3 0.012 2.6E-07 35.8 4.5 30 3-32 71-100 (398)
35 PRK15462 dipeptide/tripeptide 96.2 0.0076 1.6E-07 39.3 3.7 31 2-32 63-94 (493)
36 TIGR00890 2A0111 Oxalate/Forma 96.2 0.022 4.8E-07 34.3 5.5 29 3-31 259-287 (377)
37 PRK09556 uhpT sugar phosphate 96.2 0.022 4.7E-07 36.3 5.7 31 3-33 83-113 (467)
38 KOG0255|consensus 96.2 0.0062 1.4E-07 39.1 3.2 30 3-32 137-166 (521)
39 PRK11195 lysophospholipid tran 96.2 0.0054 1.2E-07 38.2 2.9 28 3-30 57-84 (393)
40 PRK15403 multidrug efflux syst 96.2 0.0082 1.8E-07 37.7 3.6 30 3-32 70-99 (413)
41 TIGR01299 synapt_SV2 synaptic 96.2 0.021 4.6E-07 39.0 5.7 30 3-32 221-250 (742)
42 PF07690 MFS_1: Major Facilita 96.2 0.0094 2E-07 35.7 3.7 30 3-32 51-80 (352)
43 TIGR00893 2A0114 d-galactonate 96.2 0.015 3.2E-07 35.0 4.5 30 3-32 48-77 (399)
44 PRK03545 putative arabinose tr 96.1 0.0084 1.8E-07 37.1 3.5 29 3-31 63-91 (390)
45 COG2223 NarK Nitrate/nitrite t 96.1 0.025 5.4E-07 36.4 5.5 32 3-34 273-304 (417)
46 PRK11663 regulatory protein Uh 96.1 0.02 4.4E-07 36.1 5.1 30 3-32 77-106 (434)
47 PRK10642 proline/glycine betai 96.1 0.019 4.1E-07 36.8 4.9 23 3-25 305-327 (490)
48 PRK10473 multidrug efflux syst 96.1 0.01 2.2E-07 36.6 3.6 30 3-32 57-86 (392)
49 PRK10207 dipeptide/tripeptide 96.0 0.011 2.3E-07 38.3 3.7 30 3-32 69-99 (489)
50 PRK12307 putative sialic acid 96.0 0.01 2.2E-07 36.9 3.5 30 3-32 72-101 (426)
51 TIGR00924 yjdL_sub1_fam amino 96.0 0.024 5.1E-07 36.5 5.2 31 2-32 66-97 (475)
52 TIGR00710 efflux_Bcr_CflA drug 96.0 0.027 5.7E-07 34.3 5.1 30 3-32 59-88 (385)
53 PRK11551 putative 3-hydroxyphe 96.0 0.035 7.5E-07 34.3 5.6 30 3-32 69-98 (406)
54 PRK10213 nepI ribonucleoside t 95.9 0.04 8.7E-07 34.4 5.8 29 4-32 75-103 (394)
55 PRK15402 multidrug efflux syst 95.9 0.012 2.5E-07 36.6 3.4 29 3-31 67-95 (406)
56 PRK10133 L-fucose transporter; 95.9 0.038 8.3E-07 35.1 5.7 29 3-31 80-108 (438)
57 PRK09952 shikimate transporter 95.9 0.035 7.7E-07 35.1 5.5 25 4-28 306-330 (438)
58 TIGR02332 HpaX 4-hydroxyphenyl 95.9 0.017 3.8E-07 36.2 4.0 30 3-32 62-91 (412)
59 PRK14995 methyl viologen resis 95.8 0.048 1.1E-06 35.1 6.0 30 3-32 60-89 (495)
60 PRK11646 multidrug resistance 95.8 0.05 1.1E-06 34.1 5.9 30 3-32 65-94 (400)
61 PRK08633 2-acyl-glycerophospho 95.8 0.037 8E-07 38.6 5.7 28 3-30 66-93 (1146)
62 TIGR00885 fucP L-fucose:H+ sym 95.8 0.013 2.9E-07 36.9 3.3 29 3-31 57-85 (410)
63 PRK10054 putative transporter; 95.8 0.043 9.3E-07 34.3 5.4 30 3-32 62-91 (395)
64 TIGR00711 efflux_EmrB drug res 95.7 0.019 4.1E-07 36.2 3.8 30 3-32 56-85 (485)
65 PRK11652 emrD multidrug resist 95.7 0.018 3.9E-07 35.6 3.6 29 3-31 62-90 (394)
66 PRK03633 putative MFS family t 95.7 0.059 1.3E-06 33.3 5.8 30 3-32 60-89 (381)
67 TIGR00901 2A0125 AmpG-related 95.7 0.059 1.3E-06 32.8 5.6 30 3-32 264-293 (356)
68 PRK10091 MFS transport protein 95.6 0.052 1.1E-06 33.6 5.4 30 3-32 57-86 (382)
69 KOG0252|consensus 95.6 0.0067 1.4E-07 39.7 1.5 31 4-34 368-398 (538)
70 KOG0254|consensus 95.6 0.035 7.5E-07 35.9 4.7 32 3-34 108-139 (513)
71 PRK03893 putative sialic acid 95.6 0.025 5.5E-07 35.9 3.9 30 3-32 74-103 (496)
72 PLN00028 nitrate transmembrane 95.5 0.025 5.5E-07 36.2 3.9 30 3-32 90-119 (476)
73 TIGR00897 2A0118 polyol permea 95.5 0.024 5.2E-07 35.3 3.5 28 3-30 67-94 (402)
74 PRK09584 tppB putative tripept 95.5 0.078 1.7E-06 34.4 5.9 30 3-32 76-106 (500)
75 PRK11043 putative transporter; 95.5 0.021 4.6E-07 35.3 3.3 29 3-31 60-88 (401)
76 KOG0252|consensus 95.4 0.043 9.3E-07 36.1 4.5 29 4-32 104-132 (538)
77 PRK09874 drug efflux system pr 95.3 0.029 6.4E-07 34.5 3.6 29 4-32 74-102 (408)
78 TIGR00892 2A0113 monocarboxyla 95.3 0.034 7.4E-07 35.4 3.8 30 3-32 73-102 (455)
79 TIGR00886 2A0108 nitrite extru 95.3 0.085 1.8E-06 32.0 5.4 30 3-32 280-309 (366)
80 PRK10504 putative transporter; 95.2 0.12 2.5E-06 32.8 6.0 29 3-31 64-92 (471)
81 TIGR00883 2A0106 metabolite-pr 95.2 0.12 2.6E-06 31.3 5.8 24 3-26 274-297 (394)
82 PF00083 Sugar_tr: Sugar (and 95.1 0.0015 3.3E-08 40.9 -2.6 33 2-34 64-96 (451)
83 TIGR00896 CynX cyanate transpo 95.1 0.034 7.4E-07 33.9 3.3 26 3-28 54-79 (355)
84 PRK10489 enterobactin exporter 95.1 0.018 4E-07 35.9 2.2 30 3-32 71-100 (417)
85 TIGR00711 efflux_EmrB drug res 95.1 0.054 1.2E-06 34.2 4.2 30 3-32 310-339 (485)
86 TIGR00712 glpT glycerol-3-phos 95.0 0.043 9.4E-07 34.6 3.7 30 3-32 80-109 (438)
87 PRK10473 multidrug efflux syst 95.0 0.11 2.3E-06 32.1 5.3 30 3-32 258-287 (392)
88 TIGR00882 2A0105 oligosacchari 94.9 0.061 1.3E-06 33.3 4.2 23 3-25 57-79 (396)
89 PRK09528 lacY galactoside perm 94.8 0.065 1.4E-06 33.5 4.0 23 3-25 65-87 (420)
90 KOG2615|consensus 94.8 0.059 1.3E-06 34.8 3.7 29 6-34 90-118 (451)
91 PRK14995 methyl viologen resis 94.7 0.14 2.9E-06 33.0 5.3 30 3-32 314-343 (495)
92 PTZ00207 hypothetical protein; 94.6 0.067 1.5E-06 35.8 3.9 31 3-33 80-110 (591)
93 PF06609 TRI12: Fungal trichot 94.5 0.16 3.4E-06 34.2 5.5 29 4-32 98-126 (599)
94 TIGR00903 2A0129 major facilit 94.5 0.07 1.5E-06 33.3 3.6 21 3-23 45-65 (368)
95 PRK12307 putative sialic acid 94.4 0.28 6E-06 30.6 6.2 27 3-29 285-311 (426)
96 cd06174 MFS The Major Facilita 94.4 0.23 5E-06 29.5 5.6 29 4-32 231-260 (352)
97 PRK05122 major facilitator sup 94.4 0.27 5.9E-06 30.4 6.1 30 3-32 268-297 (399)
98 TIGR00891 2A0112 putative sial 94.3 0.25 5.3E-06 30.2 5.7 22 3-24 293-314 (405)
99 TIGR00899 2A0120 sugar efflux 94.2 0.28 6.1E-06 29.8 5.8 25 3-27 254-278 (375)
100 COG2271 UhpC Sugar phosphate p 94.2 0.09 1.9E-06 34.1 3.6 55 3-68 83-137 (448)
101 TIGR00894 2A0114euk Na(+)-depe 94.2 0.21 4.6E-06 31.6 5.3 29 3-31 95-123 (465)
102 TIGR00792 gph sugar (Glycoside 94.0 0.24 5.2E-06 30.9 5.3 29 3-31 276-304 (437)
103 PRK09874 drug efflux system pr 94.0 0.28 6.1E-06 30.2 5.6 26 5-30 279-304 (408)
104 PRK11010 ampG muropeptide tran 94.0 0.21 4.5E-06 32.3 5.1 27 3-29 278-304 (491)
105 PRK15402 multidrug efflux syst 94.0 0.38 8.3E-06 29.9 6.1 30 4-33 271-300 (406)
106 TIGR00889 2A0110 nucleoside tr 93.9 0.12 2.6E-06 32.7 3.9 29 4-32 271-299 (418)
107 PRK09528 lacY galactoside perm 93.7 0.3 6.6E-06 30.6 5.4 30 3-32 281-310 (420)
108 PRK15011 sugar efflux transpor 93.7 0.31 6.8E-06 30.3 5.4 24 3-26 271-294 (393)
109 TIGR00710 efflux_Bcr_CflA drug 93.7 0.52 1.1E-05 28.7 6.3 30 3-32 261-290 (385)
110 PRK10406 alpha-ketoglutarate t 93.6 0.35 7.5E-06 30.5 5.6 24 3-26 298-321 (432)
111 PRK15075 citrate-proton sympor 93.6 0.36 7.9E-06 30.5 5.6 22 3-24 293-314 (434)
112 PRK11902 ampG muropeptide tran 93.6 0.38 8.3E-06 30.0 5.7 29 3-31 265-293 (402)
113 PRK11128 putative 3-phenylprop 93.5 0.41 8.9E-06 29.6 5.7 28 4-31 260-287 (382)
114 PRK03893 putative sialic acid 93.5 0.44 9.5E-06 30.3 6.0 26 3-28 330-355 (496)
115 PRK11102 bicyclomycin/multidru 93.4 0.61 1.3E-05 28.5 6.3 24 3-26 249-272 (377)
116 KOG0569|consensus 93.4 0.27 5.9E-06 32.3 4.8 33 2-34 78-110 (485)
117 COG2211 MelB Na+/melibiose sym 93.3 0.56 1.2E-05 30.8 6.2 57 5-71 293-349 (467)
118 PRK10504 putative transporter; 93.3 0.35 7.5E-06 30.7 5.2 29 4-32 317-345 (471)
119 PF13347 MFS_2: MFS/sugar tran 93.3 0.2 4.4E-06 31.5 4.1 31 4-34 280-310 (428)
120 TIGR00899 2A0120 sugar efflux 93.2 0.17 3.7E-06 30.7 3.7 16 4-19 53-68 (375)
121 PRK10091 MFS transport protein 93.1 0.24 5.2E-06 30.7 4.2 29 3-31 254-282 (382)
122 PRK11551 putative 3-hydroxyphe 93.1 0.58 1.3E-05 29.0 5.9 28 3-30 274-301 (406)
123 TIGR00885 fucP L-fucose:H+ sym 92.9 0.37 8E-06 30.5 4.9 30 3-32 288-317 (410)
124 TIGR01301 GPH_sucrose GPH fami 92.3 0.16 3.4E-06 33.3 2.7 29 4-32 59-92 (477)
125 PRK03699 putative transporter; 92.3 0.87 1.9E-05 28.3 5.9 26 3-28 260-285 (394)
126 PRK12382 putative transporter; 92.2 0.44 9.5E-06 29.4 4.5 28 4-31 269-296 (392)
127 COG3104 PTR2 Dipeptide/tripept 92.2 0.24 5.1E-06 32.7 3.4 33 2-34 79-112 (498)
128 TIGR01272 gluP glucose/galacto 92.1 0.65 1.4E-05 28.4 5.1 26 3-28 197-222 (310)
129 TIGR00900 2A0121 H+ Antiporter 92.1 0.98 2.1E-05 27.1 5.9 29 4-32 267-295 (365)
130 TIGR00902 2A0127 phenyl propri 92.0 0.89 1.9E-05 28.2 5.7 29 4-32 260-288 (382)
131 TIGR00882 2A0105 oligosacchari 91.8 0.83 1.8E-05 28.4 5.4 27 4-30 274-300 (396)
132 PRK10429 melibiose:sodium symp 91.8 1.2 2.6E-05 28.6 6.3 28 4-31 286-313 (473)
133 PRK06814 acylglycerophosphoeth 91.7 0.9 2E-05 32.2 5.9 17 3-19 71-87 (1140)
134 TIGR00895 2A0115 benzoate tran 91.3 0.89 1.9E-05 27.6 5.1 18 3-20 304-321 (398)
135 TIGR00897 2A0118 polyol permea 91.3 1.3 2.7E-05 27.7 5.8 16 3-18 276-291 (402)
136 PRK15034 nitrate/nitrite trans 91.2 0.41 8.9E-06 31.3 3.7 30 3-32 89-118 (462)
137 PRK09556 uhpT sugar phosphate 91.1 1.2 2.6E-05 28.5 5.7 23 3-25 313-335 (467)
138 PRK11902 ampG muropeptide tran 90.8 1.1 2.4E-05 27.9 5.3 29 4-32 52-86 (402)
139 TIGR00901 2A0125 AmpG-related 90.6 0.44 9.6E-06 29.0 3.4 29 3-31 40-74 (356)
140 PRK10429 melibiose:sodium symp 90.6 0.49 1.1E-05 30.4 3.7 27 5-31 63-94 (473)
141 TIGR02718 sider_RhtX_FptX side 90.6 1.5 3.2E-05 27.2 5.7 22 3-24 263-284 (390)
142 PRK09848 glucuronide transport 90.5 1.3 2.9E-05 28.1 5.5 28 5-32 285-312 (448)
143 PRK03633 putative MFS family t 90.5 0.46 9.9E-06 29.4 3.4 25 3-27 254-278 (381)
144 TIGR00792 gph sugar (Glycoside 90.2 0.66 1.4E-05 29.0 3.9 28 4-31 55-87 (437)
145 PRK10133 L-fucose transporter; 90.1 0.66 1.4E-05 29.6 3.9 26 3-28 314-339 (438)
146 PF05631 DUF791: Protein of un 89.9 0.58 1.2E-05 29.7 3.4 24 5-28 90-113 (354)
147 PRK11043 putative transporter; 89.7 3 6.4E-05 25.9 6.5 27 4-30 258-284 (401)
148 TIGR00889 2A0110 nucleoside tr 89.6 2.7 5.8E-05 26.7 6.3 28 3-30 57-85 (418)
149 COG2814 AraJ Arabinose efflux 89.6 0.59 1.3E-05 30.1 3.4 29 5-33 69-97 (394)
150 PRK09669 putative symporter Ya 89.5 2.4 5.3E-05 26.9 6.1 24 4-27 284-307 (444)
151 KOG3764|consensus 89.2 0.62 1.3E-05 30.5 3.2 31 4-34 126-156 (464)
152 PF12832 MFS_1_like: MFS_1 lik 88.5 0.64 1.4E-05 22.9 2.4 21 4-24 55-75 (77)
153 PLN00028 nitrate transmembrane 88.5 2.1 4.6E-05 27.6 5.4 12 3-14 307-318 (476)
154 TIGR00805 oat sodium-independe 87.8 0.16 3.5E-06 34.1 0.0 32 3-34 87-118 (633)
155 PRK11010 ampG muropeptide tran 87.6 2.8 6E-05 27.3 5.5 29 4-32 65-99 (491)
156 KOG2504|consensus 86.9 2.4 5.2E-05 28.1 5.0 31 3-33 100-130 (509)
157 PRK09705 cynX putative cyanate 86.9 1.2 2.6E-05 27.8 3.5 28 3-30 259-286 (393)
158 COG0738 FucP Fucose permease [ 86.8 3.3 7.2E-05 27.0 5.4 31 2-32 66-96 (422)
159 PRK09669 putative symporter Ya 86.1 1.4 3.1E-05 27.9 3.5 25 5-29 66-95 (444)
160 PF13347 MFS_2: MFS/sugar tran 86.0 0.45 9.7E-06 30.0 1.3 28 5-32 58-90 (428)
161 PRK15011 sugar efflux transpor 85.7 1.5 3.3E-05 27.3 3.5 12 7-18 74-85 (393)
162 TIGR00896 CynX cyanate transpo 85.6 1.6 3.5E-05 26.6 3.6 27 3-29 251-278 (355)
163 PRK08633 2-acyl-glycerophospho 85.0 1.5 3.2E-05 30.9 3.5 30 3-32 288-317 (1146)
164 PF11947 DUF3464: Protein of u 84.8 2.5 5.4E-05 23.9 3.7 31 6-37 56-86 (153)
165 PF07690 MFS_1: Major Facilita 84.7 2.6 5.6E-05 25.2 4.1 30 3-32 262-291 (352)
166 TIGR00893 2A0114 d-galactonate 83.9 3 6.5E-05 25.1 4.2 13 3-15 270-282 (399)
167 PF06813 Nodulin-like: Nodulin 83.7 6.8 0.00015 23.7 5.5 32 2-33 54-85 (250)
168 KOG0255|consensus 83.7 2.6 5.5E-05 27.4 4.0 31 4-34 370-400 (521)
169 PRK11462 putative transporter; 83.2 4.2 9.1E-05 26.2 4.8 22 3-24 282-303 (460)
170 TIGR00806 rfc RFC reduced fola 82.5 6.6 0.00014 26.4 5.4 32 2-33 80-111 (511)
171 PF01788 PsbJ: PsbJ; InterPro 82.3 3.1 6.8E-05 18.1 3.3 28 8-35 2-29 (40)
172 PRK03545 putative arabinose tr 81.9 7.9 0.00017 24.0 5.5 17 3-19 260-276 (390)
173 PF06898 YqfD: Putative stage 81.1 2.5 5.5E-05 27.0 3.2 31 5-35 78-108 (385)
174 COG2814 AraJ Arabinose efflux 80.0 9.1 0.0002 24.8 5.3 30 2-32 265-294 (394)
175 PRK10054 putative transporter; 79.7 11 0.00023 23.7 5.6 27 5-31 265-291 (395)
176 TIGR02876 spore_yqfD sporulati 79.5 3.3 7.1E-05 26.5 3.3 31 5-35 75-105 (382)
177 PRK09848 glucuronide transport 79.0 5.7 0.00012 25.2 4.3 26 3-28 63-93 (448)
178 COG0477 ProP Permeases of the 78.2 3.9 8.5E-05 23.1 3.2 21 3-23 58-78 (338)
179 KOG1330|consensus 78.1 1.1 2.4E-05 29.7 0.9 32 3-34 87-118 (493)
180 TIGR02332 HpaX 4-hydroxyphenyl 77.8 4 8.7E-05 25.7 3.3 14 3-16 298-311 (412)
181 KOG2816|consensus 77.6 4.1 8.9E-05 26.8 3.4 27 6-32 84-110 (463)
182 KOG0253|consensus 77.6 2.9 6.2E-05 27.6 2.6 22 6-27 135-156 (528)
183 TIGR00788 fbt folate/biopterin 75.1 9.7 0.00021 24.7 4.6 21 4-24 80-105 (468)
184 KOG2532|consensus 74.4 6.1 0.00013 26.0 3.5 30 3-32 92-121 (466)
185 PRK10489 enterobactin exporter 73.9 14 0.00031 23.1 5.0 28 4-31 279-306 (417)
186 KOG2563|consensus 73.5 5.3 0.00011 26.6 3.1 31 2-32 97-127 (480)
187 TIGR00926 2A1704 Peptide:H+ sy 71.9 27 0.00057 24.2 6.1 31 3-33 42-73 (654)
188 PF10518 TAT_signal: TAT (twin 71.8 5.6 0.00012 15.5 2.6 18 10-27 1-18 (26)
189 PRK11462 putative transporter; 71.6 11 0.00025 24.3 4.3 26 5-30 66-96 (460)
190 PF06779 DUF1228: Protein of u 68.8 12 0.00027 18.9 3.2 29 6-34 49-77 (85)
191 PF09788 Tmemb_55A: Transmembr 67.2 22 0.00047 21.9 4.5 25 9-33 191-215 (256)
192 PF11700 ATG22: Vacuole efflux 67.1 26 0.00056 23.2 5.2 21 6-26 92-112 (477)
193 PRK10213 nepI ribonucleoside t 67.1 27 0.00058 22.0 5.1 17 5-22 273-289 (394)
194 PF01306 LacY_symp: LacY proto 66.5 14 0.0003 24.1 3.8 30 3-32 278-307 (412)
195 PF03825 Nuc_H_symport: Nucleo 65.0 34 0.00074 22.0 6.1 24 5-28 58-82 (400)
196 PRK10207 dipeptide/tripeptide 64.9 30 0.00065 22.7 5.2 28 5-32 330-364 (489)
197 KOG0637|consensus 64.8 5.5 0.00012 26.6 1.8 24 9-32 96-120 (498)
198 COG2223 NarK Nitrate/nitrite t 61.6 16 0.00035 24.0 3.5 30 4-33 69-98 (417)
199 TIGR01301 GPH_sucrose GPH fami 60.3 30 0.00065 23.0 4.6 29 6-34 327-356 (477)
200 PF05977 MFS_3: Transmembrane 52.6 36 0.00078 22.8 4.1 26 7-32 277-302 (524)
201 COG2270 Permeases of the major 52.5 12 0.00025 24.8 1.7 26 2-27 306-331 (438)
202 COG0109 CyoE Polyprenyltransfe 52.2 59 0.0013 20.6 4.7 47 10-64 95-141 (304)
203 PF13000 Acatn: Acetyl-coenzym 50.9 18 0.00039 24.6 2.5 30 5-34 61-91 (544)
204 PF03825 Nuc_H_symport: Nucleo 49.0 70 0.0015 20.6 5.5 30 4-33 263-292 (400)
205 COG3913 SciT Uncharacterized p 47.9 7.7 0.00017 23.1 0.4 15 8-22 81-95 (227)
206 PF05978 UNC-93: Ion channel r 47.2 49 0.0011 18.5 3.6 23 3-25 56-78 (156)
207 PF07698 7TM-7TMR_HD: 7TM rece 45.0 58 0.0013 18.4 5.6 31 2-32 115-145 (194)
208 KOG3762|consensus 42.1 28 0.00061 24.1 2.3 27 4-30 66-92 (618)
209 PF13537 GATase_7: Glutamine a 41.9 7.9 0.00017 20.5 -0.1 11 7-17 95-105 (125)
210 PF03092 BT1: BT1 family; Int 41.8 96 0.0021 20.1 5.2 29 6-34 46-79 (433)
211 KOG3574|consensus 40.0 71 0.0015 21.5 3.8 23 10-32 94-117 (510)
212 TIGR03373 VI_minor_4 type VI s 39.9 3.8 8.2E-05 22.6 -1.6 14 8-21 76-89 (136)
213 PF03369 Herpes_UL3: Herpesvir 39.7 11 0.00023 20.6 0.2 11 7-17 11-21 (134)
214 PF09867 DUF2094: Uncharacteri 39.0 6.2 0.00013 21.7 -0.8 12 8-19 76-87 (138)
215 PF15172 Prolactin_RP: Prolact 38.5 9.6 0.00021 17.1 -0.1 10 8-17 28-37 (47)
216 PRK10692 hypothetical protein; 38.5 57 0.0012 16.8 2.6 22 12-33 2-23 (92)
217 TIGR02979 phageshock_pspD phag 37.8 18 0.00039 17.1 0.7 15 3-17 23-37 (59)
218 PF02827 PKI: cAMP-dependent p 37.7 11 0.00023 18.8 -0.0 9 8-16 13-21 (74)
219 PF09584 Phageshock_PspD: Phag 37.3 19 0.00042 17.4 0.8 15 3-17 28-42 (66)
220 cd03766 Gn_AT_II_novel Gn_AT_I 37.1 8.5 0.00018 22.0 -0.5 12 7-18 138-149 (181)
221 PF09605 Trep_Strep: Hypotheti 36.4 87 0.0019 18.0 3.6 28 5-32 49-76 (186)
222 PF09716 ETRAMP: Malarial earl 35.0 65 0.0014 16.2 3.2 24 10-33 49-72 (84)
223 PF10762 DUF2583: Protein of u 34.5 67 0.0015 16.5 2.5 21 12-32 2-22 (89)
224 PF08080 zf-RNPHF: RNPHF zinc 34.5 13 0.00029 15.7 0.0 9 8-16 3-11 (36)
225 PRK11371 hypothetical protein; 33.8 80 0.0017 16.8 3.1 26 9-34 11-36 (126)
226 KOG4686|consensus 33.2 1.4E+02 0.0029 19.6 4.2 22 5-26 321-342 (459)
227 KOG4684|consensus 30.3 1.3E+02 0.0029 18.3 5.5 22 8-29 202-223 (275)
228 PF07672 MFS_Mycoplasma: Mycop 30.2 1.4E+02 0.0031 18.6 5.0 22 11-33 169-190 (267)
229 PF11349 DUF3151: Protein of u 29.8 23 0.0005 19.4 0.5 7 65-71 77-83 (129)
230 KOG2727|consensus 29.6 22 0.00048 26.1 0.4 12 4-15 944-955 (1244)
231 PF11460 DUF3007: Protein of u 29.2 87 0.0019 16.6 2.5 23 13-35 3-25 (104)
232 COG2119 Predicted membrane pro 28.8 1.3E+02 0.0029 17.8 5.3 19 3-21 23-41 (190)
233 PF12911 OppC_N: N-terminal TM 28.8 66 0.0014 14.3 2.4 20 7-26 8-27 (56)
234 PF10399 UCR_Fe-S_N: Ubiquitin 28.3 64 0.0014 14.0 3.3 12 10-21 8-19 (41)
235 PRK10497 peripheral inner memb 27.5 34 0.00073 16.9 0.7 15 3-17 35-49 (73)
236 PF13623 SurA_N_2: SurA N-term 26.9 92 0.002 17.3 2.5 26 9-34 2-27 (145)
237 PF11166 DUF2951: Protein of u 26.6 1.1E+02 0.0023 16.1 3.5 23 14-36 72-94 (98)
238 KOG4830|consensus 26.5 20 0.00044 22.8 -0.1 11 6-16 83-93 (412)
239 TIGR00769 AAA ADP/ATP carrier 25.3 1.8E+02 0.0039 19.5 4.0 31 5-35 65-95 (472)
240 PF06939 DUF1286: Protein of u 24.7 34 0.00075 18.4 0.5 13 3-15 38-50 (114)
241 PF03904 DUF334: Domain of unk 24.5 1.8E+02 0.0038 17.8 4.1 27 9-35 141-168 (230)
242 KOG3762|consensus 24.5 1.3E+02 0.0029 21.0 3.3 36 1-36 513-548 (618)
243 PF12273 RCR: Chitin synthesis 24.2 82 0.0018 16.9 2.0 11 14-24 1-11 (130)
244 COG1738 yhhQ Uncharacterized m 23.8 1.8E+02 0.0039 17.7 6.4 55 7-61 72-138 (233)
245 COG2332 CcmE Cytochrome c-type 23.0 1.6E+02 0.0035 16.8 3.4 19 12-30 5-23 (153)
246 PRK05529 cell division protein 22.8 1.7E+02 0.0036 17.8 3.3 21 9-29 29-49 (255)
247 PRK13150 cytochrome c-type bio 22.4 1.7E+02 0.0036 16.8 3.4 15 13-27 6-20 (159)
248 PRK06568 F0F1 ATP synthase sub 21.3 84 0.0018 17.8 1.7 23 47-69 7-29 (154)
249 PF09885 DUF2112: Uncharacteri 21.0 50 0.0011 18.4 0.7 21 2-22 11-31 (143)
250 PF12841 YvrJ: YvrJ protein fa 21.0 47 0.001 14.2 0.5 14 2-15 11-24 (38)
251 PRK13159 cytochrome c-type bio 20.8 1.8E+02 0.0039 16.6 3.5 12 13-24 6-17 (155)
252 PF01770 Folate_carrier: Reduc 20.1 2.2E+02 0.0047 18.9 3.5 27 4-30 61-87 (412)
253 CHL00123 rps6 ribosomal protei 20.1 18 0.00039 18.6 -1.1 9 8-16 44-52 (97)
No 1
>KOG0569|consensus
Probab=99.37 E-value=7.2e-13 Score=84.30 Aligned_cols=68 Identities=34% Similarity=0.515 Sum_probs=57.8
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL 71 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (71)
+++.+++||.|||++++.+..++.++.+.+.+.....+.. .....+..+++.++|.++|+.|+||+||
T Consensus 323 ~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~--~~~~~y~~i~~~~~~~~~f~~G~gpi~~ 390 (485)
T KOG0569|consen 323 LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF--GSWLSYLCIAAIFLFIISFAIGPGPIPW 390 (485)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhhcCCCchhH
Confidence 5678999999999999999999999999998776554432 1356677889999999999999999997
No 2
>KOG0254|consensus
Probab=99.20 E-value=7.6e-11 Score=75.07 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=59.3
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCC-CcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGS-DVSSIAFLPLISVIMFIVMFSIPWGDKNL 71 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (71)
+++.+++||+|||++++.|...+.++++.++.......++. ......+..++.+++|..+|+.|++|+||
T Consensus 347 ~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w 417 (513)
T KOG0254|consen 347 LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPW 417 (513)
T ss_pred HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchh
Confidence 35578999999999999999999999999998766554321 23567899999999999999999999998
No 3
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.04 E-value=1.1e-07 Score=59.25 Aligned_cols=68 Identities=34% Similarity=0.693 Sum_probs=48.2
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL 71 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (71)
+++.+++||+|||++++.+...+.++...++.......++ +.......+++..++...++.|+++++|
T Consensus 304 ~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~~~~~g~~~~~~ 371 (451)
T PF00083_consen 304 LLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSS--SSWWSILSIVFLALFFAFFSLGWGPLPW 371 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccc--ccccccccceeeeecccccccccccccc
Confidence 3456899999999999999999999888776211121211 1234566666777788888989988775
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.01 E-value=2.6e-05 Score=49.81 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=26.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
++.++.||+|||++++.+..++.++...++..
T Consensus 354 ~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~ 385 (502)
T TIGR00887 354 VTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA 385 (502)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999998888887776643
No 5
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.79 E-value=0.00013 Score=45.81 Aligned_cols=60 Identities=27% Similarity=0.619 Sum_probs=39.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccc
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDK 69 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 69 (71)
++.++.||+|||++++.+...+.++.+.++.... . ..........+.++...++.+++|.
T Consensus 325 ~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (479)
T PRK10077 325 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY--T-----QAPGIVALLSMLFYVAAFAMSWGPV 384 (479)
T ss_pred HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh--c-----CcccHHHHHHHHHHHHHHhccccch
Confidence 4557889999999999999999888877764321 1 1223344445556666666555554
No 6
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.52 E-value=0.00077 Score=41.67 Aligned_cols=66 Identities=35% Similarity=0.613 Sum_probs=40.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccc
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDK 69 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 69 (71)
++.++.||+|||+.+..+.....++.+.+........++. ++...+..+....++..+++.++++.
T Consensus 338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (481)
T TIGR00879 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS-SKSSGNVAIVFILLFIAFFAMGWGPV 403 (481)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc-ccchhHHHHHHHHHHHHHHHccccCe
Confidence 4567899999999999998888777776663322111110 01224444455555666666666554
No 7
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.19 E-value=0.0012 Score=44.75 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=26.1
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+++.+++||+|||++++.+.++.+++.++++
T Consensus 613 il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 613 IVSALLMDKIGRLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999888888877665
No 8
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.92 E-value=0.0012 Score=41.47 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=23.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++.+..+
T Consensus 82 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 111 (432)
T PRK10406 82 LFGRIADKHGRKKSMLISVCMMCFGSLVIA 111 (432)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999998888766665543
No 9
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.87 E-value=0.0086 Score=31.01 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=23.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++.+...
T Consensus 17 ~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~ 46 (141)
T TIGR00880 17 LSGLLTDRFGRKPVLLVGLFIFVLSTAMFA 46 (141)
T ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 345678999999999988877777665544
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.80 E-value=0.0017 Score=41.56 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+..++.||+|||+.++.+.....++.+..+.
T Consensus 76 ~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~ 106 (490)
T PRK10642 76 FFGMLGDKYGRQKILAITIVIMSISTFCIGL 106 (490)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999888877766553
No 11
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=96.78 E-value=0.0045 Score=37.26 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=25.7
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
.+..++.||+|||+.++.+.....++.+....
T Consensus 48 ~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 79 (379)
T TIGR00881 48 FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF 79 (379)
T ss_pred hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence 34567899999999999999888877766553
No 12
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=96.77 E-value=0.0055 Score=38.63 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=24.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+..+..++.+..+
T Consensus 74 ~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~ 103 (479)
T PRK10077 74 LGGYCSNRFGRRDSLKIAAVLFFISALGSA 103 (479)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999988777766554
No 13
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.76 E-value=0.0021 Score=38.95 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=23.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++....+
T Consensus 54 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 54 VFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred HhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999888777665544
No 14
>PRK15075 citrate-proton symporter; Provisional
Probab=96.75 E-value=0.0023 Score=40.19 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=24.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++...++
T Consensus 75 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~ 104 (434)
T PRK15075 75 VLGAYIDRVGRRKGLIVTLSIMASGTLLIA 104 (434)
T ss_pred HHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999988777766655
No 15
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=96.75 E-value=0.0082 Score=36.04 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=24.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+...+.||+|||+.++.+.....++......
T Consensus 53 ~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 83 (365)
T TIGR00900 53 IAGALADRYDRKKVMIGADLIRAVLVAVLPF 83 (365)
T ss_pred hhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999988877776665543
No 16
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=96.68 E-value=0.007 Score=37.37 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=23.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||++++.+.....++....
T Consensus 70 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~ 98 (399)
T PRK05122 70 HAGRYADTLGPKKAVVFGLCGCALSGLLY 98 (399)
T ss_pred hhHhHHhccCCcchHHHHHHHHHHHHHHH
Confidence 45678999999999999988776664443
No 17
>PRK09952 shikimate transporter; Provisional
Probab=96.66 E-value=0.0024 Score=40.28 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=23.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 83 ~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~ 112 (438)
T PRK09952 83 VFGHFGDRLGRKRMLMLTVWMMGIATALIG 112 (438)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999998888777655443
No 18
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=96.63 E-value=0.0086 Score=36.55 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=23.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 66 ~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 95 (405)
T TIGR00891 66 MFGLWGDRYGRRLPMVTSIVLFSAGTLACG 95 (405)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999988877776655544
No 19
>TIGR00898 2A0119 cation transport protein.
Probab=96.54 E-value=0.0088 Score=38.10 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=23.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 146 ~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~ 175 (505)
T TIGR00898 146 VFGYLSDRFGRKKVLLLSTLVTAVSGVLTA 175 (505)
T ss_pred hHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998887777765544
No 20
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.54 E-value=0.011 Score=38.84 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=27.8
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
.++..+.||+.||++++.+...+.+....+++..
T Consensus 63 l~aG~laDr~drrrili~~~~~~~~~~~~L~~l~ 96 (524)
T PF05977_consen 63 LFAGALADRFDRRRILILSQLLRALVALLLAVLA 96 (524)
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999999998887777766554
No 21
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=96.52 E-value=0.009 Score=37.82 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=24.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+..++.||+|||+.++.+.....+..+.++.
T Consensus 82 ~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~ 112 (452)
T PRK11273 82 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 112 (452)
T ss_pred hhhhhhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 4567899999999999998877777665553
No 22
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.51 E-value=0.015 Score=37.69 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=24.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
++.++.||+|||+.++++...+.++....
T Consensus 305 lgG~LADRiG~~~vl~~~~i~~~i~~~~~ 333 (462)
T PRK15034 305 VGGAISDKFGGVRVTLINFIFMAIFSALL 333 (462)
T ss_pred hhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998887776543
No 23
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.51 E-value=0.0046 Score=38.47 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=26.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
....+.||+|||+.+..+.....++.+..+.
T Consensus 63 ~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~ 93 (393)
T PRK09705 63 AGSWLHQHVSERRSVAISLLLIAVGALMREL 93 (393)
T ss_pred hhHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999888887663
No 24
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.50 E-value=0.0072 Score=38.78 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=24.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++....+
T Consensus 75 ~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~ 104 (502)
T TIGR00887 75 FFGWLADKLGRKRVYGMELIIMIIATVASG 104 (502)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999988888777766554
No 25
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.48 E-value=0.0039 Score=37.52 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....+..+..+
T Consensus 57 ~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~ 86 (377)
T TIGR00890 57 VGGLLADKFGPRAVAMLGGILYGLGFTFYA 86 (377)
T ss_pred hhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence 456789999999999988887776665544
No 26
>TIGR00898 2A0119 cation transport protein.
Probab=96.44 E-value=0.012 Score=37.50 Aligned_cols=30 Identities=30% Similarity=0.613 Sum_probs=24.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+|||+.+..+...+.++.+.+.
T Consensus 374 ~~~~l~dr~grr~~~~~~~~~~~~~~l~~~ 403 (505)
T TIGR00898 374 ITLLLIDRLGRRYTMAASLLLAGVALLLLL 403 (505)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888877766554
No 27
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.39 E-value=0.013 Score=36.31 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=23.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.....++.....
T Consensus 90 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 90 FAGWLSDRFGRKKSLLIIALLFVIGAILMG 119 (481)
T ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999998887777766553
No 28
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=96.38 E-value=0.01 Score=35.31 Aligned_cols=30 Identities=37% Similarity=0.535 Sum_probs=24.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.....
T Consensus 53 ~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred hHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 345688999999999999988888776654
No 29
>PRK03699 putative transporter; Provisional
Probab=96.35 E-value=0.015 Score=36.13 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++..+.||+|||+.++.+.....++.....
T Consensus 61 ~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~ 90 (394)
T PRK03699 61 LNAWLMEIIPLKRQLIFGFALMILAVAGLM 90 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988877766655443
No 30
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.32 E-value=0.0079 Score=36.47 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=24.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+.++
T Consensus 56 ~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 56 ILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998888777766554
No 31
>PRK12382 putative transporter; Provisional
Probab=96.32 E-value=0.0066 Score=37.44 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=19.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~ 27 (71)
+...+.||+|||+.++.+.....++
T Consensus 70 ~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 70 YAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred hhhHHHHhhcchHHHHHHHHHHHHH
Confidence 4567899999999999887665543
No 32
>KOG0253|consensus
Probab=96.30 E-value=0.022 Score=36.90 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=27.0
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
++..+++||+|||+-+-...+.++++++....
T Consensus 399 LIt~~iverlGRKkTMal~l~~f~iflfll~~ 430 (528)
T KOG0253|consen 399 LITGVIVERLGRKKTMALSLILFGIFLFLLTT 430 (528)
T ss_pred hHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 56788999999999998888888888777653
No 33
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=96.30 E-value=0.022 Score=34.76 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=24.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....++.....
T Consensus 45 ~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~ 74 (377)
T PRK11102 45 FYGPMADSFGRKPVILGGTLVFALAAVACA 74 (377)
T ss_pred hhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888877766654
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=96.27 E-value=0.012 Score=35.75 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=23.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++.....
T Consensus 71 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 100 (398)
T TIGR00895 71 FFGPLADRIGRKRVLLWSILLFSVFTLLCA 100 (398)
T ss_pred HhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887777665544
No 35
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=96.24 E-value=0.0076 Score=39.30 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=25.2
Q ss_pred chhhhhhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKA-GRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~-gRR~lll~g~~~~~~~~~~~~ 32 (71)
+++.++.||+ |||+.++.|...+.+..+.++
T Consensus 63 ligG~LaDRilGrrr~iliG~il~~lg~lll~ 94 (493)
T PRK15462 63 ILGGFLADKVLGNRMAVMLGALLMAIGHVVLG 94 (493)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH
Confidence 3678899999 999999999988887765443
No 36
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=96.23 E-value=0.022 Score=34.25 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=22.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+..++.||+|||+.+..+.....++...+
T Consensus 259 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 287 (377)
T TIGR00890 259 FLGALSDKIGRQKTMSIVFGISAVGMAAM 287 (377)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 45678999999999888877777665544
No 37
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=96.23 E-value=0.022 Score=36.27 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+...+.||+|||+++..+.....+....++.
T Consensus 83 ~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 83 LVGYYADGKNTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred hhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence 4667899999999998888887777766664
No 38
>KOG0255|consensus
Probab=96.22 E-value=0.0062 Score=39.14 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=24.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 137 i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a 166 (521)
T KOG0255|consen 137 IFGPLSDRFGRKPVLLVSLLLFIIFGILTA 166 (521)
T ss_pred hheehHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 445688999999999999999888875544
No 39
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.22 E-value=0.0054 Score=38.23 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=22.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
+...+.||+|||++++.+.....+..+.
T Consensus 57 ~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 57 FVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred hhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 4567899999999999998877665443
No 40
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.20 E-value=0.0082 Score=37.69 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=23.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+...
T Consensus 70 ~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~ 99 (413)
T PRK15403 70 LLGPLSDRIGRRPVLITGALIFTLACAATL 99 (413)
T ss_pred hhhHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 346789999999999988877766655443
No 41
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=96.18 E-value=0.021 Score=38.99 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=23.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.+...++.++.+
T Consensus 221 i~G~LsDR~GRR~~lii~lil~~i~~ll~a 250 (742)
T TIGR01299 221 FWGGLADKLGRKQCLLICLSVNGFFAFFSS 250 (742)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998877766655544
No 42
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=96.17 E-value=0.0094 Score=35.66 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=23.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+...
T Consensus 51 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 51 FAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 456789999999999999998888844443
No 43
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.16 E-value=0.015 Score=35.03 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=23.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....++....+
T Consensus 48 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 77 (399)
T TIGR00893 48 PGGWLLDRFGARKTLAVFIVIWGVFTGLQA 77 (399)
T ss_pred hHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence 456789999999999988887776665554
No 44
>PRK03545 putative arabinose transporter; Provisional
Probab=96.15 E-value=0.0084 Score=37.05 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=22.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+++..+.....++.+..
T Consensus 63 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 91 (390)
T PRK03545 63 PLMLLTSNVERRKLLIGLFVLFIASHVLS 91 (390)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999887766665544
No 45
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.025 Score=36.36 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
++.++.||+|.|+.++....++.++....+..
T Consensus 273 ~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~ 304 (417)
T COG2223 273 LGGWLSDRIGGRRVTLAVFVGMALAAALLSLF 304 (417)
T ss_pred ccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence 46789999999999999999999998887744
No 46
>PRK11663 regulatory protein UhpC; Provisional
Probab=96.12 E-value=0.02 Score=36.06 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=24.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++.+..+
T Consensus 77 ~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 106 (434)
T PRK11663 77 VSGIVSDRSNARYFMGIGLIATGIINILFG 106 (434)
T ss_pred hhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence 456789999999999999888887776554
No 47
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.09 E-value=0.019 Score=36.82 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=17.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
++.++.||+|||+.++.+.....
T Consensus 305 ~~g~l~dr~grr~~~~~~~~~~~ 327 (490)
T PRK10642 305 VMGLLSDRFGRRPFVILGSVALF 327 (490)
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 35678999999998887765443
No 48
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=96.08 E-value=0.01 Score=36.60 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=23.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.....++.....
T Consensus 57 ~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~ 86 (392)
T PRK10473 57 FAGKIADRSGRKPVAIPGAALFIIASLLCS 86 (392)
T ss_pred hHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 456789999999999988877766655543
No 49
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.05 E-value=0.011 Score=38.30 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=25.5
Q ss_pred hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.|| +|||+.++.|.....++.+.++
T Consensus 69 ~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~ 99 (489)
T PRK10207 69 IGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG 99 (489)
T ss_pred hHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 57789999 9999999999998888766654
No 50
>PRK12307 putative sialic acid transporter; Provisional
Probab=96.04 E-value=0.01 Score=36.90 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=23.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++....+
T Consensus 72 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 101 (426)
T PRK12307 72 LFGLLADKFGRKPLMMWSIVAYSVGTGLSG 101 (426)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999887777665543
No 51
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.03 E-value=0.024 Score=36.50 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.8
Q ss_pred chhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~ 32 (71)
.++.++.|| +|||+.++.+.....++...++
T Consensus 66 ~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~ 97 (475)
T TIGR00924 66 SVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA 97 (475)
T ss_pred hhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 356788999 8999999999998888876665
No 52
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=96.00 E-value=0.027 Score=34.31 Aligned_cols=30 Identities=40% Similarity=0.439 Sum_probs=23.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+...
T Consensus 59 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~ 88 (385)
T TIGR00710 59 LWGPLSDRYGRRPVLLLGLFIFALSSLGLA 88 (385)
T ss_pred hhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 345689999999999988877777666554
No 53
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=95.97 E-value=0.035 Score=34.34 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=22.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....++.+...
T Consensus 69 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (406)
T PRK11551 69 LGGRLADRIGRKRILIVSVALFGLFSLATA 98 (406)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 456789999999999998877766654443
No 54
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=95.95 E-value=0.04 Score=34.40 Aligned_cols=29 Identities=14% Similarity=0.307 Sum_probs=23.5
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|||+.++.+.....++.+..+
T Consensus 75 ~g~l~Dr~grr~~~~~~~~~~~~~~~~~~ 103 (394)
T PRK10213 75 ITQTIQATDRRYVVILFAVLLTLSCLLVS 103 (394)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999999998887765544
No 55
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=95.93 E-value=0.012 Score=36.58 Aligned_cols=29 Identities=31% Similarity=0.336 Sum_probs=22.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+.++.+.....++....
T Consensus 67 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 67 LLGPLSDRIGRRPVMLAGVAFFILTCLAI 95 (406)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 34568899999999998887766665544
No 56
>PRK10133 L-fucose transporter; Provisional
Probab=95.93 E-value=0.038 Score=35.14 Aligned_cols=29 Identities=10% Similarity=0.210 Sum_probs=24.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+.++.+.....++.+.+
T Consensus 80 ~~g~l~dr~G~r~~l~~g~~~~~~~~~l~ 108 (438)
T PRK10133 80 PAGILMKKLSYKAGIITGLFLYALGAALF 108 (438)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998888887654
No 57
>PRK09952 shikimate transporter; Provisional
Probab=95.90 E-value=0.035 Score=35.11 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=18.8
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
..++.||+|||+.++.+.....++.
T Consensus 306 ~g~l~Dr~grr~~~~~~~~~~~~~~ 330 (438)
T PRK09952 306 FAWLADRFGRRRVYITGALIGTLSA 330 (438)
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4678999999998887766554443
No 58
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=95.88 E-value=0.017 Score=36.20 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=23.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....+.....+
T Consensus 62 ~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~ 91 (412)
T TIGR02332 62 PSNIMLAIIGARRWIAGIMVLWGIASTATM 91 (412)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999888877776666554
No 59
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=95.85 E-value=0.048 Score=35.06 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=25.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 60 ~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~ 89 (495)
T PRK14995 60 PMGALGDRIGFKRLLMLGGTLFGLASLAAA 89 (495)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999988888776655
No 60
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=95.83 E-value=0.05 Score=34.06 Aligned_cols=30 Identities=7% Similarity=0.317 Sum_probs=24.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++..+.||+|||+.++.+.....+..+.+.
T Consensus 65 ~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 65 FGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred hhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999988888776654
No 61
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=95.81 E-value=0.037 Score=38.58 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=20.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
++..+.||+|||++++.+.....+..+.
T Consensus 66 ~~G~l~Dr~grk~~l~~~~~~~~~~~~~ 93 (1146)
T PRK08633 66 PAGFLADKFSKNRVIRIVKLFEVGLTLL 93 (1146)
T ss_pred hHhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 4567899999999998887655444443
No 62
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=95.79 E-value=0.013 Score=36.86 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=23.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
...++.||+|||+.++.+.....++....
T Consensus 57 ~~g~l~~r~G~r~~~~~g~~l~~~g~~l~ 85 (410)
T TIGR00885 57 PAAIFMKKLSYKAGILLGLFLYALGAFLF 85 (410)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 45679999999999999998887776553
No 63
>PRK10054 putative transporter; Provisional
Probab=95.76 E-value=0.043 Score=34.29 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=22.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+.+.
T Consensus 62 ~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~ 91 (395)
T PRK10054 62 GFGILADKFDKKRYMLLAITAFASGFIAIP 91 (395)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence 456789999999999888877766655443
No 64
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.72 E-value=0.019 Score=36.18 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=23.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.....++.+..+
T Consensus 56 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 85 (485)
T TIGR00711 56 LTGWLAKRFGTRRLFLISTFAFTLGSLLCG 85 (485)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999887777665543
No 65
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=95.70 E-value=0.018 Score=35.55 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=22.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+.++.+.....++.+..
T Consensus 62 ~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 62 FYGPLSDRVGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred hhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 34678999999999988887666665543
No 66
>PRK03633 putative MFS family transporter protein; Provisional
Probab=95.69 E-value=0.059 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=23.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....+.....+
T Consensus 60 ~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~ 89 (381)
T PRK03633 60 LAGYVIKRIGFNRSYYLASLIFAAGCAGLG 89 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998887777665544
No 67
>TIGR00901 2A0125 AmpG-related permease.
Probab=95.66 E-value=0.059 Score=32.80 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+|||+.+..+.....+....+.
T Consensus 264 ~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~ 293 (356)
T TIGR00901 264 IGGIIMQPLNILYALLLFGIVQALTNAGFV 293 (356)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998888877766655443
No 68
>PRK10091 MFS transport protein AraJ; Provisional
Probab=95.63 E-value=0.052 Score=33.56 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=24.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....+..+..+
T Consensus 57 ~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~ 86 (382)
T PRK10091 57 IIALFSSRYSLKHILLFLVALCVIGNAMFT 86 (382)
T ss_pred HHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 346688999999999999888877766554
No 69
>KOG0252|consensus
Probab=95.62 E-value=0.0067 Score=39.73 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=27.3
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
+.+++|++|||+..+-|+..+.+..+.++..
T Consensus 368 tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~ 398 (538)
T KOG0252|consen 368 TVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP 398 (538)
T ss_pred EEEEeehhhhHHHHHhhHHHHHHHHHHHcCC
Confidence 4568999999999999999999999888753
No 70
>KOG0254|consensus
Probab=95.59 E-value=0.035 Score=35.93 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=27.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
+...+.|++|||+.++.+.+...++.++.+..
T Consensus 108 ~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a 139 (513)
T KOG0254|consen 108 LAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA 139 (513)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999988888877653
No 71
>PRK03893 putative sialic acid transporter; Provisional
Probab=95.57 E-value=0.025 Score=35.89 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+..+
T Consensus 74 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 103 (496)
T PRK03893 74 LLGAMGDRYGRRLAMVISIVLFSVGTLACG 103 (496)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999988877766665544
No 72
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=95.53 E-value=0.025 Score=36.24 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=23.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++.+..+
T Consensus 90 ~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~ 119 (476)
T PLN00028 90 AMGPVCDLYGPRYGSAFLLMLTAPAVFCMS 119 (476)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 456788999999999888877766655443
No 73
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=95.47 E-value=0.024 Score=35.32 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=22.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
+...+.||+|||+.+..+.....++...
T Consensus 67 ~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 67 ISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 4567899999999999888877766543
No 74
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.47 E-value=0.078 Score=34.41 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=24.5
Q ss_pred hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.|| +|||+.++.+.....++...++
T Consensus 76 ~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~ 106 (500)
T PRK09584 76 IGGWLGDKVLGTKRVIMLGAIVLAIGYALVA 106 (500)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 46789999 5999999999988887766554
No 75
>PRK11043 putative transporter; Provisional
Probab=95.46 E-value=0.021 Score=35.33 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+.++.+.....++.+..
T Consensus 60 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 88 (401)
T PRK11043 60 LWGPLSDRYGRKPVLLAGLSLFALGSLGM 88 (401)
T ss_pred hhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 45678999999999988877666554443
No 76
>KOG0252|consensus
Probab=95.41 E-value=0.043 Score=36.13 Aligned_cols=29 Identities=34% Similarity=0.387 Sum_probs=23.7
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
-.++-||+|||+......+.+.++.++.+
T Consensus 104 FG~lgD~~GRK~vYG~~liImIi~t~~~~ 132 (538)
T KOG0252|consen 104 FGWLGDKFGRKKVYGKELIIMIICSALSG 132 (538)
T ss_pred HHHHHhhhcchhhhhHHHHHHHHHHHHhc
Confidence 35788999999999888888888877444
No 77
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=95.34 E-value=0.029 Score=34.53 Aligned_cols=29 Identities=34% Similarity=0.594 Sum_probs=22.2
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|||+.++.+.....++.....
T Consensus 74 ~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 102 (408)
T PRK09874 74 WGGLADRKGRKIMLLRSALGMGIVMVLMG 102 (408)
T ss_pred HHHHhhhhCcHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999988877766655443
No 78
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=95.30 E-value=0.034 Score=35.43 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=23.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.....+..+..+
T Consensus 73 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 102 (455)
T TIGR00892 73 ISSILVNRFGCRPVVIAGGLLASLGMILAS 102 (455)
T ss_pred HHHHHHHHcCchHHHHhhHHHHHHHHHHHH
Confidence 456799999999999988877766655543
No 79
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=95.29 E-value=0.085 Score=31.99 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=21.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+|||+.+..+......+...+.
T Consensus 280 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~ 309 (366)
T TIGR00886 280 LGGAISDRLGGARKLLMSFLGVAMGAFLVV 309 (366)
T ss_pred ccchHHHhhccchhHHHHHHHHHHHHHHHH
Confidence 455788999999888777766555544443
No 80
>PRK10504 putative transporter; Provisional
Probab=95.21 E-value=0.12 Score=32.80 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=22.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+...+.||+|||+.++.+.....++.+..
T Consensus 64 ~~g~l~d~~g~r~~~~~~~~~~~~~~~~~ 92 (471)
T PRK10504 64 ASGWLADRVGVRNIFFTAIVLFTLGSLFC 92 (471)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 35678999999999998877766665543
No 81
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=95.16 E-value=0.12 Score=31.28 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=17.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~ 26 (71)
+..++.||+|||+.++.+.....+
T Consensus 274 ~~g~l~dr~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 274 LSGALSDRIGRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHH
Confidence 345789999999987765554443
No 82
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=95.11 E-value=0.0015 Score=40.85 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=26.2
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
+++.++.||+|||+.++.+.....++.++.+..
T Consensus 64 ~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~ 96 (451)
T PF00083_consen 64 LIFGFLADRYGRKPALIISALLMIIGSILIAFA 96 (451)
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 455678899999999999998888777666543
No 83
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.09 E-value=0.034 Score=33.86 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=19.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
+...+.||+|||+.++.+.....++.
T Consensus 54 ~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (355)
T TIGR00896 54 LAPWLARRFGEERSVAAGLLLIAAGI 79 (355)
T ss_pred hHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45678999999999988876654443
No 84
>PRK10489 enterobactin exporter EntS; Provisional
Probab=95.08 E-value=0.018 Score=35.86 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=22.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++...+.
T Consensus 71 ~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 71 VGGVLADRYDRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred hhHHHhhhcCCceEEEehHHHHHHHHHHHH
Confidence 456789999999998887776666555443
No 85
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=95.07 E-value=0.054 Score=34.16 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=23.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+++..+.....++...+.
T Consensus 310 ~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~ 339 (485)
T TIGR00711 310 IAGRMGDKIDPRKLVTIGLILYAVGFYWRA 339 (485)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence 456688999999999888877777666554
No 86
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=95.01 E-value=0.043 Score=34.61 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=23.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||++++.+.....++.+...
T Consensus 80 ~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~ 109 (438)
T TIGR00712 80 IMGSVSDRSNPRVFLPAGLILSAAVMLLMG 109 (438)
T ss_pred ccchhhhccCCceehHHHHHHHHHHHHHHh
Confidence 456789999999999888877777665543
No 87
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=95.00 E-value=0.11 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=22.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....+....+.
T Consensus 258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 258 STPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999888876666655544
No 88
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.95 E-value=0.061 Score=33.34 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=17.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
+..++.||+|||+.++.+.....
T Consensus 57 ~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 57 LFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHH
Confidence 45678999999999887655443
No 89
>PRK09528 lacY galactoside permease; Reviewed
Probab=94.76 E-value=0.065 Score=33.53 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=17.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
+...+.||+|||+.++.+.....
T Consensus 65 ~~G~l~Dr~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 65 LYGLISDKLGLKKHLLWIISGLL 87 (420)
T ss_pred HHHHHHHHhCchHHHHHHHHHHH
Confidence 45678999999998877655443
No 90
>KOG2615|consensus
Probab=94.76 E-value=0.059 Score=34.81 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.4
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.+.||.|||+.++.+..+.++..++.+..
T Consensus 90 ~~SD~yGRkpvll~c~~~va~s~ll~~~S 118 (451)
T KOG2615|consen 90 CLSDRYGRKPVLLACLIGVALSYLLWALS 118 (451)
T ss_pred hhhhhhCchHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999998887776643
No 91
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=94.68 E-value=0.14 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+.....++...+.
T Consensus 314 ~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 314 IAGILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 445688999999998888877766655443
No 92
>PTZ00207 hypothetical protein; Provisional
Probab=94.62 E-value=0.067 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
++.++.||+|||++++++.....++.+..+.
T Consensus 80 p~G~L~Dr~G~R~vllig~ll~~iG~ll~al 110 (591)
T PTZ00207 80 PYSFIYDYLGPRPIFVLSMTVFCLGTLLFAL 110 (591)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999888877764
No 93
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=94.55 E-value=0.16 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.|.+|||..++.+.....++.++.+
T Consensus 98 ~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a 126 (599)
T PF06609_consen 98 VGRLSDLFGRRYFFIIGSLLGVVGSIVCA 126 (599)
T ss_pred hHHHHHHhcchHHHHHHHHHHHhHHHHhh
Confidence 34588999999999999998888887765
No 94
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=94.47 E-value=0.07 Score=33.29 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=15.6
Q ss_pred hhhhhhhhhchhHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVII 23 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~ 23 (71)
...++.||+|||++++.....
T Consensus 45 ~~G~l~Dr~grr~~~~~~~~~ 65 (368)
T TIGR00903 45 PSGLLLDRAFKRWFLFGSLAT 65 (368)
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 456799999999987655443
No 95
>PRK12307 putative sialic acid transporter; Provisional
Probab=94.40 E-value=0.28 Score=30.57 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=20.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLG 29 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~ 29 (71)
+..++.||+|||+.+..+.....+..+
T Consensus 285 ~~g~l~dr~~~~~~~~~~~~~~~~~~~ 311 (426)
T PRK12307 285 VWGLCADRIGLKKTFSIGLLMSFLFIF 311 (426)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345688999999998888776655444
No 96
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=94.38 E-value=0.23 Score=29.49 Aligned_cols=29 Identities=38% Similarity=0.600 Sum_probs=22.9
Q ss_pred hhhhhhhhchhH-HHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRL-LLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~-lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|||+ .+..+.....++.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 455789999999 88888887777766655
No 97
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=94.37 E-value=0.27 Score=30.37 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=22.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.+..+...+.++...+.
T Consensus 268 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 297 (399)
T PRK05122 268 LFGNLINRLGGLRVAIVSLLVEILGLLLLW 297 (399)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 345688999999998888776666655443
No 98
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=94.32 E-value=0.25 Score=30.21 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=17.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIM 24 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~ 24 (71)
+..++.||+|||+.+..+....
T Consensus 293 ~~g~l~dr~g~~~~~~~~~~~~ 314 (405)
T TIGR00891 293 VFGFLGDWLGRRKAYVCSLLAG 314 (405)
T ss_pred HHHHHHHHhCchhhhHHHHHHH
Confidence 4567899999999888776654
No 99
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=94.21 E-value=0.28 Score=29.78 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=18.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~ 27 (71)
++..+.||+|||+.+..+.....+.
T Consensus 254 ~~g~l~~r~g~~~~~~~~~~~~~~~ 278 (375)
T TIGR00899 254 LAGYLIKRFGKRRLMLLAALAGVAF 278 (375)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3457899999999887776554433
No 100
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=94.17 E-value=0.09 Score=34.15 Aligned_cols=55 Identities=18% Similarity=0.307 Sum_probs=44.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhccccc
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGD 68 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 68 (71)
+...+.||.+-|..+-.|....+++.+.++.. ..-++..++..+...+.++|+.|
T Consensus 83 ~~G~~sDr~npr~fm~~gLilsai~nil~Gfs-----------~s~~~~~~l~~lng~fQg~Gwpp 137 (448)
T COG2271 83 VMGVLSDRSNPRYFMAFGLILSAIVNILFGFS-----------PSLFLFAVLWVLNGWFQGMGWPP 137 (448)
T ss_pred HhhhhcccCCCceeehHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHhcCCCcH
Confidence 34568899999999999999999999998853 23456666777788888888876
No 101
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=94.16 E-value=0.21 Score=31.64 Aligned_cols=29 Identities=10% Similarity=-0.030 Sum_probs=22.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
++.++.||+|||+.+..+.....+..+..
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 123 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVI 123 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 45678999999999988887766665543
No 102
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.04 E-value=0.24 Score=30.92 Aligned_cols=29 Identities=31% Similarity=0.417 Sum_probs=22.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+..++.||+|||+.+..+.....++.+.+
T Consensus 276 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 304 (437)
T TIGR00792 276 LFPRLVKKFGRKILFAGGILLMVLGYLIF 304 (437)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 34568999999999988887776665544
No 103
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=94.00 E-value=0.28 Score=30.22 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=19.4
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
.++.||+|||+.+..+.....+..+.
T Consensus 279 g~l~dr~g~~~~~~~~~~~~~~~~~~ 304 (408)
T PRK09874 279 GKLGDRIGPEKILITALIFSVLLLIP 304 (408)
T ss_pred HHHHhccccchhHHHHHHHHHHHHHH
Confidence 46889999999988877765554443
No 104
>PRK11010 ampG muropeptide transporter; Validated
Probab=93.98 E-value=0.21 Score=32.33 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=19.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLG 29 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~ 29 (71)
++.++.||+|||+.++.+...+.+..+
T Consensus 278 l~G~L~dr~g~~~~l~i~~~l~~l~~l 304 (491)
T PRK11010 278 YGGILMQRLSLFRALMIFGILQGVSNA 304 (491)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456789999999988776665555443
No 105
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=93.96 E-value=0.38 Score=29.89 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=22.7
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
...+.||++||+.+..+.....++...+..
T Consensus 271 ~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~ 300 (406)
T PRK15402 271 LARLTSRRPLRSLIRMGLWPMVAGLLLAAL 300 (406)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999988887777666665554
No 106
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=93.93 E-value=0.12 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=22.7
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|||++++.+.....++...+.
T Consensus 271 ~g~l~dr~g~r~~l~~~~~~~~v~~~l~~ 299 (418)
T TIGR00889 271 IPFFLKRFGIKKVMLLSLVAWALRFGFFA 299 (418)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999887777655443
No 107
>PRK09528 lacY galactoside permease; Reviewed
Probab=93.74 E-value=0.3 Score=30.56 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=22.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....+.....+
T Consensus 281 ~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~ 310 (420)
T PRK09528 281 FAPFIINRIGAKNALLLAGTIMAVRIIGSG 310 (420)
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence 456789999999998888777766655543
No 108
>PRK15011 sugar efflux transporter B; Provisional
Probab=93.73 E-value=0.31 Score=30.31 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=17.3
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~ 26 (71)
+..++.||+|||+.+..+.....+
T Consensus 271 ~~G~l~dr~g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 271 IAGYFAKRLGKRFLMRVAAVAGVC 294 (393)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHH
Confidence 456788999999987766554443
No 109
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=93.70 E-value=0.52 Score=28.70 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=22.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.+..+.....++...+.
T Consensus 261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (385)
T TIGR00710 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLE 290 (385)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 445688999999988888776666655443
No 110
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=93.63 E-value=0.35 Score=30.54 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=17.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~ 26 (71)
+..++.||+|||+.++.+.....+
T Consensus 298 ~~G~l~Dr~grr~~~~~~~~~~~~ 321 (432)
T PRK10406 298 LIGALSDKIGRRTSMLCFGSLAAL 321 (432)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHH
Confidence 345789999999988776654433
No 111
>PRK15075 citrate-proton symporter; Provisional
Probab=93.62 E-value=0.36 Score=30.46 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=16.9
Q ss_pred hhhhhhhhhchhHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIM 24 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~ 24 (71)
++.++.||+|||+.++.+....
T Consensus 293 ~~g~l~Dr~g~r~~~~~~~~~~ 314 (434)
T PRK15075 293 IGGALSDRIGRRPVLIAFTVLA 314 (434)
T ss_pred HHHHHHHHhcchHHHHHHHHHH
Confidence 4567899999999887765544
No 112
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=93.61 E-value=0.38 Score=29.97 Aligned_cols=29 Identities=14% Similarity=-0.001 Sum_probs=20.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
++..+.||+|||+.+..+.....+..+.+
T Consensus 265 ~~g~l~~r~g~~~~l~~~~~~~~l~~l~~ 293 (402)
T PRK11902 265 AGGTLMVRLGLYRSLMLFGVLQAVSNLGY 293 (402)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998877776655554433
No 113
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.54 E-value=0.41 Score=29.64 Aligned_cols=28 Identities=36% Similarity=0.310 Sum_probs=21.7
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
...+.||+|+|+.+..+.....+....+
T Consensus 260 ~g~l~~r~~~~~~l~~~~~~~~~~~~~~ 287 (382)
T PRK11128 260 SNRLFRRWSARDLLLLSAICGVVRWGLM 287 (382)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999888888777765544
No 114
>PRK03893 putative sialic acid transporter; Provisional
Probab=93.54 E-value=0.44 Score=30.33 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=19.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
++.++.||+|||+.++.+.....+..
T Consensus 330 ~~g~l~dr~g~~~~~~~~~~~~~~~~ 355 (496)
T PRK03893 330 VGGFLGDWLGTRKAYVCSLLISQLLI 355 (496)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45678999999998887765554443
No 115
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=93.41 E-value=0.61 Score=28.47 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=18.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~ 26 (71)
+..++.||+|||+.+..+...+.+
T Consensus 249 ~~g~l~~r~g~~~~~~~~~~~~~~ 272 (377)
T PRK11102 249 INSRFVRRVGALNMLRFGLWIQFI 272 (377)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHH
Confidence 456788999999988877765433
No 116
>KOG0569|consensus
Probab=93.37 E-value=0.27 Score=32.34 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=25.1
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.++..+.||+|||..++.+......+.+.+...
T Consensus 78 ~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s 110 (485)
T KOG0569|consen 78 FSSGLLADRFGRKNALLLSNLLAVLAALLMGLS 110 (485)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999998888888777776665543
No 117
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=93.34 E-value=0.56 Score=30.80 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=33.5
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL 71 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (71)
..+.+|+|+|+++..+.....+..+.+-.. + ....++.++..++..+..+. .++++|
T Consensus 293 p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~----~-----~~~~~l~~~~~~i~~~g~~~-~~~l~w 349 (467)
T COG2211 293 PRLVKKFGKKKLFLIGLLLLAVGYLLLYFT----P-----AGSVVLIVVALIIAGVGTGI-ANPLPW 349 (467)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHhh----c-----CcchHHHHHHHHHHHHHhhc-cccccH
Confidence 458899999999999977666665544322 1 12234444444555555543 244444
No 118
>PRK10504 putative transporter; Provisional
Probab=93.29 E-value=0.35 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=22.4
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|||+++..+.....+....+.
T Consensus 317 ~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 345 (471)
T PRK10504 317 VVQVVNRFGYRRVLVATTLGLALVSLLFM 345 (471)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 45688999999999888877766655544
No 119
>PF13347 MFS_2: MFS/sugar transport protein
Probab=93.25 E-value=0.2 Score=31.52 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=25.5
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
..++.||+|||+.+..+.....++.+.+...
T Consensus 280 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~ 310 (428)
T PF13347_consen 280 WGRLSKRFGKKKVYIIGLLLAALGFLLLFFL 310 (428)
T ss_pred HHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence 3568899999999999999888887766543
No 120
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=93.24 E-value=0.17 Score=30.72 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=11.8
Q ss_pred hhhhhhhhchhHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLL 19 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~ 19 (71)
...+.||+|||+.++.
T Consensus 53 ~g~l~Dr~g~r~~~~~ 68 (375)
T TIGR00899 53 LATRSDYQGDRKGLIL 68 (375)
T ss_pred HHHHHhccCCchHHHH
Confidence 3467899998886554
No 121
>PRK10091 MFS transport protein AraJ; Provisional
Probab=93.11 E-value=0.24 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=21.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+..++.||+|||+++..+...+.++.+.+
T Consensus 254 ~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 254 LSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred HHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 44567899999999888877666665443
No 122
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=93.09 E-value=0.58 Score=28.95 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=20.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
+..++.||+|||+.+..+.....++...
T Consensus 274 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~ 301 (406)
T PRK11551 274 LIGALMDRLRPRRVVLLIYAGILASLAA 301 (406)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4557899999999888766655555443
No 123
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=92.95 E-value=0.37 Score=30.47 Aligned_cols=30 Identities=13% Similarity=-0.093 Sum_probs=23.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+++|+++......+.+..+...
T Consensus 288 ~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~ 317 (410)
T TIGR00885 288 IGTWLISYLAAHKVLMAYAIIGMALCLGSI 317 (410)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999988887777776655544
No 124
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=92.32 E-value=0.16 Score=33.25 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=19.7
Q ss_pred hhhhhh----hhchhHHHHHH-HHHHHHHHHHHH
Q psy16665 4 SVVLVD----KAGRRLLLLLS-VIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d----~~gRR~lll~g-~~~~~~~~~~~~ 32 (71)
..++.| |+|||+.++.+ .....+++..+.
T Consensus 59 ~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~ 92 (477)
T TIGR01301 59 VGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG 92 (477)
T ss_pred eeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 346789 59999987764 555556555554
No 125
>PRK03699 putative transporter; Provisional
Probab=92.27 E-value=0.87 Score=28.32 Aligned_cols=26 Identities=8% Similarity=-0.021 Sum_probs=19.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
++.++.||++||+.+........+..
T Consensus 260 ~~g~l~dr~~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 260 IFSFIVRFFDLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHH
Confidence 45678899999998887666555443
No 126
>PRK12382 putative transporter; Provisional
Probab=92.20 E-value=0.44 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.3
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
...+.||+|||+.+..+.....+....+
T Consensus 269 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 296 (392)
T PRK12382 269 FGWMPDRFGGVKVAIVSLLVETVGLLLL 296 (392)
T ss_pred HHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence 4567899999999888877776665544
No 127
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=92.19 E-value=0.24 Score=32.74 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=28.9
Q ss_pred chhhhhhhh-hchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDK-AGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 2 ~~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
++|.|+.|| +|+|+.++.|.+.+.++.++++..
T Consensus 79 i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~ 112 (498)
T COG3104 79 IIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS 112 (498)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Confidence 468899998 799999999999999999988754
No 128
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=92.12 E-value=0.65 Score=28.36 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=20.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
++..+.||+|+|+++..+...+.+..
T Consensus 197 ~~~~l~~r~g~~~~l~~~~~l~~~~~ 222 (310)
T TIGR01272 197 IGSAVMPMISQGRYLAFNAFLAVLLS 222 (310)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 46678999999998887776666554
No 129
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=92.12 E-value=0.98 Score=27.09 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=21.1
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
..++.||.+||+++..+.....++...+.
T Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (365)
T TIGR00900 267 LGLLGRYFKRMALMTGAIFVIGLAILVVG 295 (365)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 45678999999998887766666655443
No 130
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=92.01 E-value=0.89 Score=28.19 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=23.5
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
...+.||+|+|+++..+.....+....++
T Consensus 260 ~~~l~~r~g~~~~l~~~~~~~~~~~~~~~ 288 (382)
T TIGR00902 260 SNKLFQNCSARDLLLISAIACVGRWAIIG 288 (382)
T ss_pred hHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999888887766654
No 131
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=91.82 E-value=0.83 Score=28.36 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=20.9
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
...+.||+|||+.++.+.....+....
T Consensus 274 ~g~l~~r~g~~~~l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 274 APLIINRIGAKNALLIAGTIMSVRIIG 300 (396)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 346899999999998888766665544
No 132
>PRK10429 melibiose:sodium symporter; Provisional
Probab=91.82 E-value=1.2 Score=28.62 Aligned_cols=28 Identities=36% Similarity=0.317 Sum_probs=20.4
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
...+.||+|||+.++.+.....++.+.+
T Consensus 286 ~~~l~~r~gkk~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 286 FPRLVKSLSRRILWAGASIFPVLSCGVL 313 (473)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 3468899999999988877655554443
No 133
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=91.65 E-value=0.9 Score=32.18 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=13.4
Q ss_pred hhhhhhhhhchhHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLL 19 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~ 19 (71)
++..+.||+|||+++..
T Consensus 71 ~~G~laDr~~rk~~~~~ 87 (1140)
T PRK06814 71 LAGQLADKYDKAKLAKI 87 (1140)
T ss_pred hHHhhhhhccHHHHHHH
Confidence 45678999999997644
No 134
>TIGR00895 2A0115 benzoate transport.
Probab=91.34 E-value=0.89 Score=27.62 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=12.8
Q ss_pred hhhhhhhhhchhHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLS 20 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g 20 (71)
+..++.||+|||+..+..
T Consensus 304 ~~~~l~~~~~~~~~~~~~ 321 (398)
T TIGR00895 304 IFGWLADRLGPRVTALLL 321 (398)
T ss_pred HHHHHHhhcchHHHHHHH
Confidence 456789999999554443
No 135
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=91.27 E-value=1.3 Score=27.72 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=12.2
Q ss_pred hhhhhhhhhchhHHHH
Q psy16665 3 LSVVLVDKAGRRLLLL 18 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll 18 (71)
...++.||+|||+.+.
T Consensus 276 ~~g~l~dr~~~~~~~~ 291 (402)
T TIGR00897 276 IFGIVGDKLGWMNTVR 291 (402)
T ss_pred HHHHHHHhhcchhHHH
Confidence 3467899999988663
No 136
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=91.23 E-value=0.41 Score=31.27 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=23.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
....+.||+|.|+.+..+.....+.....+
T Consensus 89 p~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~ 118 (462)
T PRK15034 89 PYSFMVPIFGGRRWTVFSTAILIIPCVWLG 118 (462)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence 346789999999999888888777666555
No 137
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=91.14 E-value=1.2 Score=28.46 Aligned_cols=23 Identities=26% Similarity=0.121 Sum_probs=16.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
++.++.||+|||+.++.......
T Consensus 313 ~~G~lsDr~g~r~~~~~~~~~~~ 335 (467)
T PRK09556 313 LWGWLSDLANGRRALVACIALAL 335 (467)
T ss_pred HHHHHHHHHCCCchHHHHHHHHH
Confidence 45678999999987766544333
No 138
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=90.77 E-value=1.1 Score=27.93 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=21.4
Q ss_pred hhhhhhhh-----chhH-HHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKA-----GRRL-LLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~-----gRR~-lll~g~~~~~~~~~~~~ 32 (71)
-..++||+ |||| .++.+..++.+++..+.
T Consensus 52 ~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 52 WAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA 86 (402)
T ss_pred HHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 35688999 7775 68887888877777654
No 139
>TIGR00901 2A0125 AmpG-related permease.
Probab=90.65 E-value=0.44 Score=29.00 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=18.7
Q ss_pred hhhhhhhhh-----chhHH-HHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKA-----GRRLL-LLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~-----gRR~l-ll~g~~~~~~~~~~~ 31 (71)
+...++||+ ||||. ++.+.....++...+
T Consensus 40 ~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l 74 (356)
T TIGR00901 40 LWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL 74 (356)
T ss_pred HHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 345688997 89886 455566555554444
No 140
>PRK10429 melibiose:sodium symporter; Provisional
Probab=90.61 E-value=0.49 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=18.4
Q ss_pred hhhhh----hhch-hHHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVD----KAGR-RLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 5 ~~l~d----~~gR-R~lll~g~~~~~~~~~~~ 31 (71)
.++.| |+|| |+.++.+.+.+.++...+
T Consensus 63 G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll 94 (473)
T PRK10429 63 GWIVNNTRSRWGKFKPWILIGTLANSVVLFLL 94 (473)
T ss_pred eeehhcCCCCCCCcchhHhhhhHHHHHHHHHH
Confidence 46789 5598 666777877777765444
No 141
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=90.58 E-value=1.5 Score=27.19 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=17.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIM 24 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~ 24 (71)
++.++.||+|||+.+..+....
T Consensus 263 ~~g~l~~r~g~~~~l~~~~~~~ 284 (390)
T TIGR02718 263 GGAWLVRRAGLWRTFILGVGLA 284 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHH
Confidence 4567899999999988776655
No 142
>PRK09848 glucuronide transporter; Provisional
Probab=90.52 E-value=1.3 Score=28.05 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=21.5
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
..+.||+|+|+.+..+.....++.+.+.
T Consensus 285 ~~l~~r~g~~~~~~~g~~~~~i~~~~~~ 312 (448)
T PRK09848 285 PGMVARIGKKNTFLIGALLGTCGYLLFF 312 (448)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998877766655443
No 143
>PRK03633 putative MFS family transporter protein; Provisional
Probab=90.51 E-value=0.46 Score=29.39 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=18.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~ 27 (71)
...++.||+|||+.+..+.....++
T Consensus 254 ~~g~l~dr~~~~~~l~~~~~~~~~~ 278 (381)
T PRK03633 254 PIGRLADRFGRLLVLRVQVFVVILG 278 (381)
T ss_pred hhHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3467899999999887666555443
No 144
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=90.19 E-value=0.66 Score=28.96 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=18.0
Q ss_pred hhhhhhh----hchhH-HHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDK----AGRRL-LLLLSVIIMGLCLGVL 31 (71)
Q Consensus 4 ~~~l~d~----~gRR~-lll~g~~~~~~~~~~~ 31 (71)
..++.|| +|||| .++.+.....++...+
T Consensus 55 ~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~ 87 (437)
T TIGR00792 55 MGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL 87 (437)
T ss_pred heEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence 3567887 67754 5667777666665544
No 145
>PRK10133 L-fucose transporter; Provisional
Probab=90.07 E-value=0.66 Score=29.61 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=19.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
.+.++.||+|||+.+..+.....+.+
T Consensus 314 ~~g~l~~r~g~~~~l~~~~~~~~~~~ 339 (438)
T PRK10133 314 TGTWLISRFAPHKVLAAYALIAMALC 339 (438)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 45678999999998877765554433
No 146
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=89.87 E-value=0.58 Score=29.73 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=17.2
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCL 28 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~ 28 (71)
..+.||+|||+.-+...+...++.
T Consensus 90 G~laD~~Grk~~cl~~cily~~sc 113 (354)
T PF05631_consen 90 GSLADRYGRKKACLLFCILYSLSC 113 (354)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH
Confidence 457899999997766666554443
No 147
>PRK11043 putative transporter; Provisional
Probab=89.69 E-value=3 Score=25.89 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=18.1
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
+..+.||+|||+.+..+.....++...
T Consensus 258 ~~~l~~r~~~~~~~~~~~~~~~~~~~~ 284 (401)
T PRK11043 258 CRAALQKWGGEQLLPWLLVLFAVSVIA 284 (401)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 346779999999776666555554443
No 148
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=89.59 E-value=2.7 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.049 Sum_probs=17.9
Q ss_pred hhhhhhhhhch-hHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGR-RLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gR-R~lll~g~~~~~~~~~~ 30 (71)
+...+.||+|| |+.+..+.....+....
T Consensus 57 ~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 57 LVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34568999965 66777666655444433
No 149
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=89.59 E-value=0.59 Score=30.05 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.5
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
..+.||+.||++++.......++.++.+.
T Consensus 69 ~~lt~r~~Rr~lLl~~l~lFi~~n~l~al 97 (394)
T COG2814 69 ALLTGRLERRRLLLGLLALFIVSNLLSAL 97 (394)
T ss_pred HHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence 45779999999999988888887776553
No 150
>PRK09669 putative symporter YagG; Provisional
Probab=89.49 E-value=2.4 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=17.8
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~ 27 (71)
..++.||+|||+.+..+.....+.
T Consensus 284 ~~~l~~r~gk~~~~~~~~~~~~~~ 307 (444)
T PRK09669 284 SERLLGKFDRVRAFKWTIVAFVIL 307 (444)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHH
Confidence 346899999999988776655443
No 151
>KOG3764|consensus
Probab=89.17 E-value=0.62 Score=30.47 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=26.1
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
...++||+|+|.+++.|...+..+.++++..
T Consensus 126 ~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg 156 (464)
T KOG3764|consen 126 FGNLIDRIGYKIPMVAGLFVMFLSTILFAFG 156 (464)
T ss_pred chhhHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999888877643
No 152
>PF12832 MFS_1_like: MFS_1 like family
Probab=88.50 E-value=0.64 Score=22.91 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=15.5
Q ss_pred hhhhhhhhchhHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIM 24 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~ 24 (71)
-..+.||.+||+..+.....+
T Consensus 55 ~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 55 WGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHCccHHHHHHHHHH
Confidence 356889999999877665443
No 153
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=88.48 E-value=2.1 Score=27.58 Aligned_cols=12 Identities=42% Similarity=0.365 Sum_probs=9.7
Q ss_pred hhhhhhhhhchh
Q psy16665 3 LSVVLVDKAGRR 14 (71)
Q Consensus 3 ~~~~l~d~~gRR 14 (71)
++.++.||++||
T Consensus 307 ~~G~lsDr~~~r 318 (476)
T PLN00028 307 AGGYLSDVAARR 318 (476)
T ss_pred hhHHHHHHHHHh
Confidence 456899999976
No 154
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=87.81 E-value=0.16 Score=34.09 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=27.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
+..++.||.|||+.+..+.++++++.++.+.-
T Consensus 87 ~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp 118 (633)
T TIGR00805 87 FVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP 118 (633)
T ss_pred HHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence 45678899999999999999999998887754
No 155
>PRK11010 ampG muropeptide transporter; Validated
Probab=87.57 E-value=2.8 Score=27.28 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=20.4
Q ss_pred hhhhhhhh-----chhHH-HHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKA-----GRRLL-LLLSVIIMGLCLGVLG 32 (71)
Q Consensus 4 ~~~l~d~~-----gRR~l-ll~g~~~~~~~~~~~~ 32 (71)
-..+.||+ |||+. ++.+.....++...++
T Consensus 65 ~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a 99 (491)
T PRK11010 65 WSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG 99 (491)
T ss_pred HHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 34688999 99885 6677776666665554
No 156
>KOG2504|consensus
Probab=86.94 E-value=2.4 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+...+.||+|.|+..+.|...+.++++.-+.
T Consensus 100 l~s~l~~rfg~R~v~i~G~~v~~~g~~lssF 130 (509)
T KOG2504|consen 100 LVSALCNRFGCRTVMIAGGLVAALGLLLSSF 130 (509)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999998776653
No 157
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=86.88 E-value=1.2 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=20.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
+..++.||.|||+....+.....+....
T Consensus 259 ~~g~l~~r~~~~~~~~~~~~l~~~~~~~ 286 (393)
T PRK09705 259 LMPAMARHQDRRKLLMLALVLQLVGFCG 286 (393)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 3456889999999888877666555443
No 158
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=86.82 E-value=3.3 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=26.4
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...++++|+|+|+=++.|..++.+...++.
T Consensus 66 lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 66 LPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999988877663
No 159
>PRK09669 putative symporter YagG; Provisional
Probab=86.12 E-value=1.4 Score=27.92 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=16.0
Q ss_pred hhhhhh----hchh-HHHHHHHHHHHHHHH
Q psy16665 5 VVLVDK----AGRR-LLLLLSVIIMGLCLG 29 (71)
Q Consensus 5 ~~l~d~----~gRR-~lll~g~~~~~~~~~ 29 (71)
.++.|| +||| +.++.+.+...++..
T Consensus 66 G~lsD~~~~r~Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 66 GALVDRTRTRHGQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred eEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence 456787 7774 556667676666654
No 160
>PF13347 MFS_2: MFS/sugar transport protein
Probab=85.96 E-value=0.45 Score=30.00 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=19.0
Q ss_pred hhhhh----hhchhHH-HHHHHHHHHHHHHHHH
Q psy16665 5 VVLVD----KAGRRLL-LLLSVIIMGLCLGVLG 32 (71)
Q Consensus 5 ~~l~d----~~gRR~l-ll~g~~~~~~~~~~~~ 32 (71)
..+.| |+|||+. ++.|.+...++...+-
T Consensus 58 G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf 90 (428)
T PF13347_consen 58 GYLSDRTRTRWGRRRPWILIGAILLALSFFLLF 90 (428)
T ss_pred EEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence 35678 8997764 5567777777766553
No 161
>PRK15011 sugar efflux transporter B; Provisional
Probab=85.65 E-value=1.5 Score=27.29 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=9.3
Q ss_pred hhhhhchhHHHH
Q psy16665 7 LVDKAGRRLLLL 18 (71)
Q Consensus 7 l~d~~gRR~lll 18 (71)
..||.|||+.++
T Consensus 74 ~~dr~g~r~~~~ 85 (393)
T PRK15011 74 RSDKRGDRKSLI 85 (393)
T ss_pred HHhcccchhHHH
Confidence 389999998644
No 162
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=85.64 E-value=1.6 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=17.4
Q ss_pred hhhhhhhhh-chhHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKA-GRRLLLLLSVIIMGLCLG 29 (71)
Q Consensus 3 ~~~~l~d~~-gRR~lll~g~~~~~~~~~ 29 (71)
+..++.||+ +||+.+..+...+.++..
T Consensus 251 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 278 (355)
T TIGR00896 251 LIPALARRVKDQRGIVAVLAVLQLVGLC 278 (355)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 345678999 566666666665555544
No 163
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=85.00 E-value=1.5 Score=30.95 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=20.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||.+||+++..+..+..++.+.+.
T Consensus 288 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 317 (1146)
T PRK08633 288 LAGRLSGRHIELGLVPLGALGLALSLFLLP 317 (1146)
T ss_pred HHHHHhCCceEccchhHHHHHHHHHHHHHH
Confidence 345677888888888777776666655444
No 164
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=84.83 E-value=2.5 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=18.0
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHHhhc
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFL 37 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~ 37 (71)
.+.||.-||-.+..|.. ..+++..+.++...
T Consensus 56 ~Vs~RM~rRm~~~~GiP-~~lG~~~f~~~y~l 86 (153)
T PF11947_consen 56 VVSNRMLRRMAVFVGIP-TALGVAVFVVFYYL 86 (153)
T ss_pred HHHHHHHHHHHHHhchH-HHHHHHHHHHHHHH
Confidence 46788888877766654 34444444434333
No 165
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=84.70 E-value=2.6 Score=25.20 Aligned_cols=30 Identities=33% Similarity=0.347 Sum_probs=21.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||++||+..........+....+.
T Consensus 262 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (352)
T PF07690_consen 262 LAGRLSDRFGRRRRLLIAILLLILGALGLL 291 (352)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 446678999998877777766666555544
No 166
>TIGR00893 2A0114 d-galactonate transporter.
Probab=83.93 E-value=3 Score=25.08 Aligned_cols=13 Identities=38% Similarity=0.107 Sum_probs=10.4
Q ss_pred hhhhhhhhhchhH
Q psy16665 3 LSVVLVDKAGRRL 15 (71)
Q Consensus 3 ~~~~l~d~~gRR~ 15 (71)
+..++.||++||+
T Consensus 270 ~~g~~~~~~~~~~ 282 (399)
T TIGR00893 270 LGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHhhcc
Confidence 3467889999996
No 167
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=83.70 E-value=6.8 Score=23.68 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=26.6
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+.+..+.|+.|.|..+++|.....++...+..
T Consensus 54 ~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l 85 (250)
T PF06813_consen 54 ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL 85 (250)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999888776653
No 168
>KOG0255|consensus
Probab=83.70 E-value=2.6 Score=27.36 Aligned_cols=31 Identities=32% Similarity=0.569 Sum_probs=26.1
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.....|+.|||..+..+.....++.+..+..
T Consensus 370 ~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~ 400 (521)
T KOG0255|consen 370 NGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL 400 (521)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence 3467899999999999999988888877754
No 169
>PRK11462 putative transporter; Provisional
Probab=83.18 E-value=4.2 Score=26.24 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.7
Q ss_pred hhhhhhhhhchhHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIM 24 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~ 24 (71)
++..+.||+|||+.+..+....
T Consensus 282 l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 282 LAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 3567889999998876555433
No 170
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=82.51 E-value=6.6 Score=26.36 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=25.2
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+++.++.||+|-|+.+..+.+.-.+...+++.
T Consensus 80 Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f 111 (511)
T TIGR00806 80 VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL 111 (511)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999998888877777666653
No 171
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=82.26 E-value=3.1 Score=18.10 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=17.1
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 8 VDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 8 ~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
.|..||-|+.+++.+.-......+++++
T Consensus 2 ~~ttGRIPLWlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 2 ANTTGRIPLWLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp ---TTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHHhe
Confidence 3567999999888876666655666554
No 172
>PRK03545 putative arabinose transporter; Provisional
Probab=81.88 E-value=7.9 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=11.9
Q ss_pred hhhhhhhhhchhHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLL 19 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~ 19 (71)
+..++.||.|||++.+.
T Consensus 260 ~~g~l~dr~~~~~~~~~ 276 (390)
T PRK03545 260 LFSRLGNRHPSGFLLIA 276 (390)
T ss_pred HHHHHhhccchhHHHHH
Confidence 34568899998875433
No 173
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=81.08 E-value=2.5 Score=26.99 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=25.8
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
.++..|..||+.++.|.+++.+.+..++-+.
T Consensus 78 pF~~~r~~~R~~~~~G~~~f~~~l~~lS~fI 108 (385)
T PF06898_consen 78 PFFLKRLRRRKGFVAGIVLFLALLYILSSFI 108 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 4678899999999999999888888887543
No 174
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=79.96 E-value=9.1 Score=24.83 Aligned_cols=30 Identities=30% Similarity=0.420 Sum_probs=22.7
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
.++..+.|| +.|+.+......+.+.++.+.
T Consensus 265 ~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~ 294 (394)
T COG2814 265 LLGGRLADR-GPRRALIAALLLLALALLALT 294 (394)
T ss_pred HHHhhhccc-cchhHHHHHHHHHHHHHHHHH
Confidence 356778899 888888888777777777654
No 175
>PRK10054 putative transporter; Provisional
Probab=79.72 E-value=11 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=19.3
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
..+.||.+||+.+..+.....+....+
T Consensus 265 g~~~~~~~~~~~l~~~~~~~~~~~~~~ 291 (395)
T PRK10054 265 GRRLNAANIRPLMTAGTLCFVIGLVGF 291 (395)
T ss_pred HHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 356799999998888876665555443
No 176
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=79.48 E-value=3.3 Score=26.54 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.3
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
.++..|..||+.++.|.+++.+.+..++-+.
T Consensus 75 pF~~~r~~kRk~~~~G~~~f~~ll~~lS~fI 105 (382)
T TIGR02876 75 PFLFKRLRKRPGILIGILLFLAIVYFLSNFI 105 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhheE
Confidence 4678999999999999999988888887554
No 177
>PRK09848 glucuronide transporter; Provisional
Probab=78.98 E-value=5.7 Score=25.23 Aligned_cols=26 Identities=15% Similarity=0.177 Sum_probs=15.5
Q ss_pred hhhhhhhhh----chhHHH-HHHHHHHHHHH
Q psy16665 3 LSVVLVDKA----GRRLLL-LLSVIIMGLCL 28 (71)
Q Consensus 3 ~~~~l~d~~----gRR~ll-l~g~~~~~~~~ 28 (71)
+...+.||. |||+.. +.+.+...+..
T Consensus 63 ~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~ 93 (448)
T PRK09848 63 FAGRVVDSVNTRWGKFRPFLLFGTAPLMIFS 93 (448)
T ss_pred hheeeeecCCCCCcCchHHHHHHHHHHHHHH
Confidence 345678986 777744 55655554443
No 178
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=78.23 E-value=3.9 Score=23.14 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=16.1
Q ss_pred hhhhhhhhhchhHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVII 23 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~ 23 (71)
....+.||.|||+.++.+...
T Consensus 58 ~~g~l~d~~g~~~~~~~~~~~ 78 (338)
T COG0477 58 LAGPLGDRYGRRKVLIIGLLL 78 (338)
T ss_pred hhhhccccccchHHHHHHHHH
Confidence 345678999999888777765
No 179
>KOG1330|consensus
Probab=78.15 E-value=1.1 Score=29.71 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=24.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
+..++.||..||.++.+|...=.++.+..+..
T Consensus 87 l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs 118 (493)
T KOG1330|consen 87 LFGYLADRYNRKRVIAVGIFIWTLAVFASGFS 118 (493)
T ss_pred HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH
Confidence 45689999999999998887766666655544
No 180
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=77.75 E-value=4 Score=25.73 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=10.7
Q ss_pred hhhhhhhhhchhHH
Q psy16665 3 LSVVLVDKAGRRLL 16 (71)
Q Consensus 3 ~~~~l~d~~gRR~l 16 (71)
+..++.||++||+.
T Consensus 298 ~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 298 WWSRHSDRLKERKH 311 (412)
T ss_pred HHHHHhcccCccHH
Confidence 45678899997775
No 181
>KOG2816|consensus
Probab=77.65 E-value=4.1 Score=26.78 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=21.0
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
.+.||+|||..+......+.+..+.+.
T Consensus 84 ~lSD~~grk~~L~~~~~~~~l~~~~~~ 110 (463)
T KOG2816|consen 84 ALSDRYGRKVVLLLPLFGTILPALCLL 110 (463)
T ss_pred HhhhhhhhhhhHHHHHHHHHHhHHHHH
Confidence 478999999999888877766655544
No 182
>KOG0253|consensus
Probab=77.58 E-value=2.9 Score=27.64 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=15.6
Q ss_pred hhhhhhchhHHHHHHHHHHHHH
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~~ 27 (71)
...|++|||+.+........+.
T Consensus 135 l~~d~~grr~~f~~T~l~t~v~ 156 (528)
T KOG0253|consen 135 LSADTIGRRKGFNLTFLVTGVF 156 (528)
T ss_pred eehhhhhcchhhhhhHHHHHHH
Confidence 3679999999876666554443
No 183
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=75.08 E-value=9.7 Score=24.72 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=15.8
Q ss_pred hhhhhhhhc-----hhHHHHHHHHHH
Q psy16665 4 SVVLVDKAG-----RRLLLLLSVIIM 24 (71)
Q Consensus 4 ~~~l~d~~g-----RR~lll~g~~~~ 24 (71)
...+.||++ ||+.++.+....
T Consensus 80 ~g~l~D~~~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 80 AGVMSDTFPLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHH
Confidence 356889998 777777777655
No 184
>KOG2532|consensus
Probab=74.35 E-value=6.1 Score=25.97 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=24.1
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
.+.++.||+|-|+++..+....++..+++-
T Consensus 92 P~g~l~~k~G~r~v~~~~~~~sa~~t~l~P 121 (466)
T KOG2532|consen 92 PGGYLADKFGARRVFFISGLISALLTLLTP 121 (466)
T ss_pred CcHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999887777766544
No 185
>PRK10489 enterobactin exporter EntS; Provisional
Probab=73.85 E-value=14 Score=23.12 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=17.6
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
..++.||.+||+.+..+.....+..+.+
T Consensus 279 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 306 (417)
T PRK10489 279 SGWLAHSARPGLLMLLSTLGSFLAVGLF 306 (417)
T ss_pred HHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence 3456677777777777766665554443
No 186
>KOG2563|consensus
Probab=73.50 E-value=5.3 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=25.2
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+.++|+.||+|=|...+.+..++.++..+=.
T Consensus 97 f~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~ 127 (480)
T KOG2563|consen 97 FAAMWILDKFGLRTALLLGTVLNGIGAWIRL 127 (480)
T ss_pred hHHHHhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 4578999999999999999988888766533
No 187
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=71.86 E-value=27 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=24.5
Q ss_pred hhhhhhh-hhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVD-KAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d-~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
++.++.| ++||++.++.+.+...+++.++++
T Consensus 42 lGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 42 IGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 699999999999888888877764
No 188
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=71.84 E-value=5.6 Score=15.49 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=12.5
Q ss_pred hhchhHHHHHHHHHHHHH
Q psy16665 10 KAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 10 ~~gRR~lll~g~~~~~~~ 27 (71)
|+.||..+-.+.......
T Consensus 1 ~~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 1 NLSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 467999888777655444
No 189
>PRK11462 putative transporter; Provisional
Probab=71.65 E-value=11 Score=24.28 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=16.1
Q ss_pred hhhhhh----hchhH-HHHHHHHHHHHHHHH
Q psy16665 5 VVLVDK----AGRRL-LLLLSVIIMGLCLGV 30 (71)
Q Consensus 5 ~~l~d~----~gRR~-lll~g~~~~~~~~~~ 30 (71)
.++.|| +|||+ .++.+.+.+.++...
T Consensus 66 G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 66 GLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred eehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 346675 68765 566676777666543
No 190
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=68.83 E-value=12 Score=18.92 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred hhhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
++-++.++|+++..+.....+....++..
T Consensus 49 ~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 49 RLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666778888888888877777643
No 191
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=67.19 E-value=22 Score=21.87 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=15.6
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 9 DKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 9 d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
.++.||+.++....+..+..+.+++
T Consensus 191 ~~faRkR~i~f~llgllfliiaigl 215 (256)
T PF09788_consen 191 PRFARKRAIIFFLLGLLFLIIAIGL 215 (256)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3688888777666655554444443
No 192
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=67.08 E-value=26 Score=23.16 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=13.8
Q ss_pred hhhhhhchhHHHHHHHHHHHH
Q psy16665 6 VLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 6 ~l~d~~gRR~lll~g~~~~~~ 26 (71)
-+.|+-+|||.++........
T Consensus 92 a~aD~~~~Rk~~l~~~~~~~~ 112 (477)
T PF11700_consen 92 AIADYGGRRKRFLLIFTLLGV 112 (477)
T ss_pred HHHcccccchHHHHHHHHHHH
Confidence 367999988876665554433
No 193
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=67.08 E-value=27 Score=21.96 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=7.6
Q ss_pred hhhhhhhchhHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVI 22 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~ 22 (71)
..+.||.+| +.++.+..
T Consensus 273 ~~l~~r~~~-~~l~~~~~ 289 (394)
T PRK10213 273 SFILKRSVK-LALAGAPL 289 (394)
T ss_pred HHHHhccch-hHHHHHHH
Confidence 345566433 43333333
No 194
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=66.55 E-value=14 Score=24.15 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++++|+|-|+.++.+...+.+-....+
T Consensus 278 ~~p~li~rig~k~~Lllag~i~~iRi~~~~ 307 (412)
T PF01306_consen 278 FSPWLINRIGAKNLLLLAGVIMAIRIIGSG 307 (412)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHhHHHHHHHHHHHHHHHHh
Confidence 455789999999999999988887766655
No 195
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=65.00 E-value=34 Score=21.96 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=14.1
Q ss_pred hhhhhhhc-hhHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAG-RRLLLLLSVIIMGLCL 28 (71)
Q Consensus 5 ~~l~d~~g-RR~lll~g~~~~~~~~ 28 (71)
..+.||.+ +|+.+........+.+
T Consensus 58 g~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 58 GAIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 35789986 4556655555444443
No 196
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=64.89 E-value=30 Score=22.74 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=20.2
Q ss_pred hhhhhhhchhH-------HHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRL-------LLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 5 ~~l~d~~gRR~-------lll~g~~~~~~~~~~~~ 32 (71)
..+.||.+||+ .+..|.....++++.++
T Consensus 330 ~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 330 AGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 35779999987 36677777777766554
No 197
>KOG0637|consensus
Probab=64.79 E-value=5.5 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=14.0
Q ss_pred hhhchhHHHHH-HHHHHHHHHHHHH
Q psy16665 9 DKAGRRLLLLL-SVIIMGLCLGVLG 32 (71)
Q Consensus 9 d~~gRR~lll~-g~~~~~~~~~~~~ 32 (71)
.|+||||..+. +..+..+++..++
T Consensus 96 sr~GRRRPfI~~~s~~i~~~l~Lig 120 (498)
T KOG0637|consen 96 SRYGRRRPFILAGSLLIAVSLFLIG 120 (498)
T ss_pred cccccccchHHHhhHHHHHHHhhhh
Confidence 36898776554 4455555555444
No 198
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=61.63 E-value=16 Score=23.97 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=22.6
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
-.++.||+|-|+....+.....+-.+.++.
T Consensus 69 ~g~l~drfGgR~~~~~s~~l~~IP~~~~~~ 98 (417)
T COG2223 69 YGFLTDRFGGRKWTILSMLLLLIPCLGLAF 98 (417)
T ss_pred HHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 356899999999988888776666555543
No 199
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=60.35 E-value=30 Score=22.99 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=21.4
Q ss_pred hhhhhhch-hHHHHHHHHHHHHHHHHHHHH
Q psy16665 6 VLVDKAGR-RLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 6 ~l~d~~gR-R~lll~g~~~~~~~~~~~~~~ 34 (71)
.+.+|+|+ |+....+....++++......
T Consensus 327 ~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i 356 (477)
T TIGR01301 327 KLCRGWGAGKRLWGIVNIILAICLAATVLV 356 (477)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 46788985 667788888888887766544
No 200
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=52.64 E-value=36 Score=22.82 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=17.6
Q ss_pred hhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 7 LVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 7 l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+.+|.++++++..+....+++++.++
T Consensus 277 l~~~~~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 277 LRRRLSSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred hhcccCcchhhHHHHHHHHHHHHHHh
Confidence 44566777777777777776666554
No 201
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=52.45 E-value=12 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=19.7
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLC 27 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~ 27 (71)
++..++.||+|-|++++++.+...+.
T Consensus 306 ii~g~Ld~rfg~k~vl~~~lvi~~~~ 331 (438)
T COG2270 306 IIAGFLDERFGSKPVLMIGLVILSIA 331 (438)
T ss_pred HHHHHHHHHhCCceeehHHHHHHHHH
Confidence 35568899999999888887655443
No 202
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=52.19 E-value=59 Score=20.60 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=32.1
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhc
Q psy16665 10 KAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSI 64 (71)
Q Consensus 10 ~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (71)
++..|..+..|..+...+...+.... |.-..++....++.|.+.|+.
T Consensus 95 ~i~p~~al~fgl~L~~~g~~~l~~~v--------n~laa~l~~~gi~~Yv~vYT~ 141 (304)
T COG0109 95 LISPREALAFGLVLGVAGFSLLWFLV--------NLLAAVLGLFGIFFYVVVYTL 141 (304)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhhhhh
Confidence 34556678888888877777664332 235567777888888888764
No 203
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=50.87 E-value=18 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=19.2
Q ss_pred hhhhhhhchhHHHHHH-HHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLS-VIIMGLCLGVLGFY 34 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g-~~~~~~~~~~~~~~ 34 (71)
+....|+||||-.++- ..++.+.++.++..
T Consensus 61 s~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~~ 91 (544)
T PF13000_consen 61 SVYSKRIGRRKSWIIPIQYLSGILMLYLSYN 91 (544)
T ss_pred hhcccccCCcchhhhHHHHHHHHHHHHHHhc
Confidence 3456799999965543 35666666666533
No 204
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=48.97 E-value=70 Score=20.58 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=24.0
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
...+..|+|-|++++.+.....+-...++.
T Consensus 263 ~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 263 SGRFLKRFGIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999888877766653
No 205
>COG3913 SciT Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.87 E-value=7.7 Score=23.06 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=11.7
Q ss_pred hhhhchhHHHHHHHH
Q psy16665 8 VDKAGRRLLLLLSVI 22 (71)
Q Consensus 8 ~d~~gRR~lll~g~~ 22 (71)
.||+|||..+.+...
T Consensus 81 aDrvgR~fPl~vaa~ 95 (227)
T COG3913 81 ADRVGRRFPLLVAAA 95 (227)
T ss_pred chhhcccccHHHHHh
Confidence 599999998766544
No 206
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=47.16 E-value=49 Score=18.54 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=17.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
++..+++++|.|+.++.|...-.
T Consensus 56 ~~P~iv~~lg~K~sm~lg~~~y~ 78 (156)
T PF05978_consen 56 FAPSIVNKLGPKWSMILGSLGYA 78 (156)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHH
Confidence 34567899999998888877554
No 207
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=45.02 E-value=58 Score=18.45 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=20.0
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+++.+.++|..||.=++.......+......
T Consensus 115 ~~~~~~~~~~~~R~~~i~ag~~v~l~~~~~~ 145 (194)
T PF07698_consen 115 IVAIFSVRRIRSRSDIIKAGLLVGLVNALMI 145 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999988866655555544444443
No 208
>KOG3762|consensus
Probab=42.07 E-value=28 Score=24.08 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=17.9
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
..++.||+.||+.++.|..+..+....
T Consensus 66 ~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 66 WGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 457889999877766666555544333
No 209
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=41.90 E-value=7.9 Score=20.49 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=4.2
Q ss_pred hhhhhchhHHH
Q psy16665 7 LVDKAGRRLLL 17 (71)
Q Consensus 7 l~d~~gRR~ll 17 (71)
..|++|+|+++
T Consensus 95 ~rD~~G~rpLy 105 (125)
T PF13537_consen 95 ARDRFGIRPLY 105 (125)
T ss_dssp EE-TT--S--E
T ss_pred EECCCCCCCeE
Confidence 45899999874
No 210
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=41.84 E-value=96 Score=20.11 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=18.1
Q ss_pred hhhhhh-----chhHHHHHHHHHHHHHHHHHHHH
Q psy16665 6 VLVDKA-----GRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 6 ~l~d~~-----gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.+.|-+ .||+-++.+.....++...++..
T Consensus 46 ~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~ 79 (433)
T PF03092_consen 46 LLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALL 79 (433)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 456665 36666777777776666655543
No 211
>KOG3574|consensus
Probab=39.95 E-value=71 Score=21.53 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=13.3
Q ss_pred hhchhHHHHHH-HHHHHHHHHHHH
Q psy16665 10 KAGRRLLLLLS-VIIMGLCLGVLG 32 (71)
Q Consensus 10 ~~gRR~lll~g-~~~~~~~~~~~~ 32 (71)
|+||||-.++- ..+....+..++
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs 117 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLS 117 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHh
Confidence 99999965443 234444444444
No 212
>TIGR03373 VI_minor_4 type VI secretion-associated protein, BMA_A0400 family. Members of this protein family are found exclusively, although not universally, in bacterial species that possess a type VI secretion system. Genes are found in type VI secretion-associated gene clusters. The specific function is unknown. This model represents the rather well-conserved amino-terminal domain of a protein family in which carboxy-terminal regions, when present, show little conservation.
Probab=39.93 E-value=3.8 Score=22.55 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=10.7
Q ss_pred hhhhchhHHHHHHH
Q psy16665 8 VDKAGRRLLLLLSV 21 (71)
Q Consensus 8 ~d~~gRR~lll~g~ 21 (71)
.||+||+..+++..
T Consensus 76 ~D~vGR~fPl~~~~ 89 (136)
T TIGR03373 76 RDRVGRYFPLTVAA 89 (136)
T ss_pred ccccCCcCceeeee
Confidence 59999998775544
No 213
>PF03369 Herpes_UL3: Herpesvirus UL3 protein; InterPro: IPR005035 Herpes simplex viruses are large DNA viruses, the genome of which encode approximately 80 genes. The UL3 gene of Human herpesvirus 2 (HHV-2) is predicted to encode a 233 amino acid protein with a molecular mass of 26 kDa. Homologues of the UL3 protein are encoded only among alphaherpesviruses. The function of the UL3 protein of Herpes simplex viruses remains unknown but it is known to localize to the nucleus and is a phosphoprotein [].
Probab=39.70 E-value=11 Score=20.63 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=8.5
Q ss_pred hhhhhchhHHH
Q psy16665 7 LVDKAGRRLLL 17 (71)
Q Consensus 7 l~d~~gRR~ll 17 (71)
-+|..|||++-
T Consensus 11 SidELGRRQLT 21 (134)
T PF03369_consen 11 SIDELGRRQLT 21 (134)
T ss_pred ecchhhhhhhh
Confidence 36899999863
No 214
>PF09867 DUF2094: Uncharacterized protein conserved in bacteria (DUF2094); InterPro: IPR017748 These proteins are found exclusively, although not universally, in bacterial species that possess a type VI secretion system and are encoded in type VI secretion-associated gene clusters. Their specific function is not yet known. Occasionally a domain is found C-terminal to this entry, but it shows little if any conservation between sequences.; PDB: 2QNU_B.
Probab=39.04 E-value=6.2 Score=21.67 Aligned_cols=12 Identities=58% Similarity=0.924 Sum_probs=5.8
Q ss_pred hhhhchhHHHHH
Q psy16665 8 VDKAGRRLLLLL 19 (71)
Q Consensus 8 ~d~~gRR~lll~ 19 (71)
+||+|||..+++
T Consensus 76 ~D~vGR~fPl~~ 87 (138)
T PF09867_consen 76 VDRVGRRFPLTL 87 (138)
T ss_dssp B-TTS-B--EEE
T ss_pred ccccCCcCceee
Confidence 599999886643
No 215
>PF15172 Prolactin_RP: Prolactin-releasing peptide
Probab=38.51 E-value=9.6 Score=17.12 Aligned_cols=10 Identities=40% Similarity=0.511 Sum_probs=7.1
Q ss_pred hhhhchhHHH
Q psy16665 8 VDKAGRRLLL 17 (71)
Q Consensus 8 ~d~~gRR~ll 17 (71)
+.|||||+.-
T Consensus 28 vGRFGrR~aa 37 (47)
T PF15172_consen 28 VGRFGRRRAA 37 (47)
T ss_pred cccccchhcc
Confidence 4678888753
No 216
>PRK10692 hypothetical protein; Provisional
Probab=38.48 E-value=57 Score=16.81 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy16665 12 GRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 12 gRR~lll~g~~~~~~~~~~~~~ 33 (71)
.||...+.|..+|.+.++.+-.
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~ 23 (92)
T PRK10692 2 KRKNASLLGNVLMGLGLVVMVV 23 (92)
T ss_pred cchhhHHHhhHHHHHHHHHHHH
Confidence 5888899999999998887653
No 217
>TIGR02979 phageshock_pspD phage shock protein PspD. Members of this family are phage shock protein PspD, found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=37.77 E-value=18 Score=17.11 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=11.9
Q ss_pred hhhhhhhhhchhHHH
Q psy16665 3 LSVVLVDKAGRRLLL 17 (71)
Q Consensus 3 ~~~~l~d~~gRR~ll 17 (71)
++.+.+..+.||++=
T Consensus 23 ~aGw~vKsVsrkPLr 37 (59)
T TIGR02979 23 VAGWAMKSVARRPLK 37 (59)
T ss_pred HHHHHHHHHhhccHH
Confidence 457888999999863
No 218
>PF02827 PKI: cAMP-dependent protein kinase inhibitor; InterPro: IPR004171 Members of this family are extremely potent competitive inhibitors of cAMP-dependent protein kinase activity. These proteins interact with the catalytic subunit of the enzyme after the cAMP-induced dissociation of its regulatory chains.; GO: 0004862 cAMP-dependent protein kinase inhibitor activity, 0006469 negative regulation of protein kinase activity; PDB: 3QAL_I 3QAM_I 3E8C_J 1YDS_I 2UZU_I 3E8E_Q 2UZV_2 2UZT_B 2UZW_I 2GNL_I ....
Probab=37.69 E-value=11 Score=18.76 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=3.9
Q ss_pred hhhhchhHH
Q psy16665 8 VDKAGRRLL 16 (71)
Q Consensus 8 ~d~~gRR~l 16 (71)
.+|.|||--
T Consensus 13 sgRtGRRNA 21 (74)
T PF02827_consen 13 SGRTGRRNA 21 (74)
T ss_dssp SSTSS----
T ss_pred ccccccccc
Confidence 478999873
No 219
>PF09584 Phageshock_PspD: Phage shock protein PspD (Phageshock_PspD); InterPro: IPR014321 Members of this entry are phage shock protein PspD, they are found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=37.30 E-value=19 Score=17.45 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=11.7
Q ss_pred hhhhhhhhhchhHHH
Q psy16665 3 LSVVLVDKAGRRLLL 17 (71)
Q Consensus 3 ~~~~l~d~~gRR~ll 17 (71)
++.+.+..++||++=
T Consensus 28 iAg~~vk~VarkPLR 42 (66)
T PF09584_consen 28 IAGWAVKSVARKPLR 42 (66)
T ss_pred HHHHHHHHHhhccHH
Confidence 456788999999863
No 220
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=37.06 E-value=8.5 Score=21.98 Aligned_cols=12 Identities=50% Similarity=0.451 Sum_probs=9.6
Q ss_pred hhhhhchhHHHH
Q psy16665 7 LVDKAGRRLLLL 18 (71)
Q Consensus 7 l~d~~gRR~lll 18 (71)
.-|++|||++..
T Consensus 138 aRD~~G~rPL~y 149 (181)
T cd03766 138 GRDCLGRRSLLY 149 (181)
T ss_pred EECCCCCcCcEE
Confidence 358999999875
No 221
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=36.42 E-value=87 Score=18.04 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=20.1
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
..+..|++||-...+......+....++
T Consensus 49 ml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 49 MLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 3477899999988777776666655544
No 222
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=35.02 E-value=65 Score=16.16 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=15.8
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 10 KAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 10 ~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+..||+.++++.+...+..++-+.
T Consensus 49 K~k~kK~iiiS~i~s~lalli~~~ 72 (84)
T PF09716_consen 49 KKKNKKKIIISTIASGLALLIATA 72 (84)
T ss_pred HHhccchhhHHHHHHHHHHHHHHH
Confidence 446677888888777766654443
No 223
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=34.49 E-value=67 Score=16.45 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q psy16665 12 GRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 12 gRR~lll~g~~~~~~~~~~~~ 32 (71)
.||...+.|...|.+.++.+-
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv 22 (89)
T PF10762_consen 2 KRKNAFLLGNVLMGLGMVVMV 22 (89)
T ss_pred CchhhHHHhhHHHHHhHHHHH
Confidence 588889999999998888754
No 224
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=34.47 E-value=13 Score=15.72 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=0.0
Q ss_pred hhhhchhHH
Q psy16665 8 VDKAGRRLL 16 (71)
Q Consensus 8 ~d~~gRR~l 16 (71)
.||+||-..
T Consensus 3 sd~FGRd~~ 11 (36)
T PF08080_consen 3 SDRFGRDLS 11 (36)
T ss_dssp ---------
T ss_pred cchhcchhh
Confidence 578887543
No 225
>PRK11371 hypothetical protein; Provisional
Probab=33.83 E-value=80 Score=16.84 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=18.0
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 9 DKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 9 d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.|+.||+-+..-...+.++.++++.+
T Consensus 11 ~~isr~ryi~sf~lin~if~~li~~~ 36 (126)
T PRK11371 11 GKISRRRYIFSFILINFIFAFLIIFF 36 (126)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHH
Confidence 46788887776666777776666554
No 226
>KOG4686|consensus
Probab=33.21 E-value=1.4e+02 Score=19.60 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=15.7
Q ss_pred hhhhhhhchhHHHHHHHHHHHH
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~ 26 (71)
..++||.||+...+.+.....+
T Consensus 321 g~i~Dk~G~n~~wv~~a~~~tl 342 (459)
T KOG4686|consen 321 GAISDKYGFNLWWVASACILTL 342 (459)
T ss_pred HHhHhhhcceehhHHHHHHHHH
Confidence 5688999999877666554443
No 227
>KOG4684|consensus
Probab=30.27 E-value=1.3e+02 Score=18.31 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=13.2
Q ss_pred hhhhchhHHHHHHHHHHHHHHH
Q psy16665 8 VDKAGRRLLLLLSVIIMGLCLG 29 (71)
Q Consensus 8 ~d~~gRR~lll~g~~~~~~~~~ 29 (71)
-.|+-||+.++.......+...
T Consensus 202 Gsrfar~Ra~~ffilal~~avt 223 (275)
T KOG4684|consen 202 GSRFARRRALLFFILALTVAVT 223 (275)
T ss_pred hhHHhhhhhHHHHHHHHHHHHH
Confidence 3578888877666554444433
No 228
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=30.21 E-value=1.4e+02 Score=18.59 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=10.0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHH
Q psy16665 11 AGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 11 ~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
..||+ .+.....+.+.+.+++.
T Consensus 169 ~kRk~-fi~~~~~~gi~~~~l~~ 190 (267)
T PF07672_consen 169 YKRKP-FIHFIISLGIVFFVLSI 190 (267)
T ss_pred hhhhh-HHHHHHHHHHHHHHHHH
Confidence 44555 44444444444444443
No 229
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=29.82 E-value=23 Score=19.44 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=3.4
Q ss_pred ccccccC
Q psy16665 65 PWGDKNL 71 (71)
Q Consensus 65 g~~~~~~ 71 (71)
|+||+||
T Consensus 77 G~GPVPw 83 (129)
T PF11349_consen 77 GHGPVPW 83 (129)
T ss_pred CCCCCCC
Confidence 4445554
No 230
>KOG2727|consensus
Probab=29.59 E-value=22 Score=26.13 Aligned_cols=12 Identities=58% Similarity=0.816 Sum_probs=9.6
Q ss_pred hhhhhhhhchhH
Q psy16665 4 SVVLVDKAGRRL 15 (71)
Q Consensus 4 ~~~l~d~~gRR~ 15 (71)
+..++||+||||
T Consensus 944 a~~lv~KvGr~P 955 (1244)
T KOG2727|consen 944 AVNLVEKVGRRP 955 (1244)
T ss_pred HHHHHHHhCCCC
Confidence 457899999976
No 231
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.22 E-value=87 Score=16.63 Aligned_cols=23 Identities=22% Similarity=0.041 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 13 RRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 13 RR~lll~g~~~~~~~~~~~~~~~ 35 (71)
|...+.+|.....+.-+....+.
T Consensus 3 R~dvl~Iglgv~~~Gg~~Y~~l~ 25 (104)
T PF11460_consen 3 RIDVLLIGLGVFLLGGLLYGGLQ 25 (104)
T ss_pred ccceeeecHHHHHHHHHHHHHHH
Confidence 45566666666666655555443
No 232
>COG2119 Predicted membrane protein [Function unknown]
Probab=28.78 E-value=1.3e+02 Score=17.76 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=10.9
Q ss_pred hhhhhhhhhchhHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSV 21 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~ 21 (71)
++..+.-|.+|++.+....
T Consensus 23 ia~llA~r~~~~~v~~g~~ 41 (190)
T COG2119 23 IAMLLAMRYRRWPVFAGIA 41 (190)
T ss_pred HHHHHHHhcCCchhHHHHH
Confidence 3455666788666554433
No 233
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=28.76 E-value=66 Score=14.27 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=14.3
Q ss_pred hhhhhchhHHHHHHHHHHHH
Q psy16665 7 LVDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 7 l~d~~gRR~lll~g~~~~~~ 26 (71)
..+|+-|.|+-++|.+...+
T Consensus 8 ~~~~f~~nk~a~~gl~il~~ 27 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLI 27 (56)
T ss_pred HHHHHHhCchHHHHHHHHHH
Confidence 45788888888888765533
No 234
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=28.34 E-value=64 Score=14.01 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=5.4
Q ss_pred hhchhHHHHHHH
Q psy16665 10 KAGRRLLLLLSV 21 (71)
Q Consensus 10 ~~gRR~lll~g~ 21 (71)
.-+||+.|....
T Consensus 8 ~~~RRdFL~~at 19 (41)
T PF10399_consen 8 DPTRRDFLTIAT 19 (41)
T ss_dssp --HHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 345676664333
No 235
>PRK10497 peripheral inner membrane phage-shock protein; Provisional
Probab=27.48 E-value=34 Score=16.95 Aligned_cols=15 Identities=20% Similarity=0.167 Sum_probs=11.7
Q ss_pred hhhhhhhhhchhHHH
Q psy16665 3 LSVVLVDKAGRRLLL 17 (71)
Q Consensus 3 ~~~~l~d~~gRR~ll 17 (71)
++.+.+..+.|||+=
T Consensus 35 ~aG~~vKsVarkPLR 49 (73)
T PRK10497 35 VAGWAVKSVARKPLK 49 (73)
T ss_pred HHHHHHHHHhhccHH
Confidence 456788999999863
No 236
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.86 E-value=92 Score=17.29 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=18.4
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHH
Q psy16665 9 DKAGRRLLLLLSVIIMGLCLGVLGFY 34 (71)
Q Consensus 9 d~~gRR~lll~g~~~~~~~~~~~~~~ 34 (71)
.|+..|..+++..++.++..++++-.
T Consensus 2 ~kIR~r~~lLi~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 2 QKIRQRGGLLIIVIGLALFAFIVGDF 27 (145)
T ss_pred hhHhhcchHHHHHHHHHHHHHHHHHH
Confidence 46667777888888777777766543
No 237
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=26.64 E-value=1.1e+02 Score=16.05 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q psy16665 14 RLLLLLSVIIMGLCLGVLGFYFF 36 (71)
Q Consensus 14 R~lll~g~~~~~~~~~~~~~~~~ 36 (71)
=++.+.|.++..++.+++++.-.
T Consensus 72 ~KmwilGlvgTi~gsliia~lr~ 94 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLIIALLRT 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999887643
No 238
>KOG4830|consensus
Probab=26.54 E-value=20 Score=22.76 Aligned_cols=11 Identities=36% Similarity=0.758 Sum_probs=8.4
Q ss_pred hhhhhhchhHH
Q psy16665 6 VLVDKAGRRLL 16 (71)
Q Consensus 6 ~l~d~~gRR~l 16 (71)
+-+||+|||+.
T Consensus 83 ~~idr~G~~~~ 93 (412)
T KOG4830|consen 83 ACIDRIGRRMS 93 (412)
T ss_pred HHhhhhcceee
Confidence 35799999874
No 239
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=25.32 E-value=1.8e+02 Score=19.51 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=22.3
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 5 VVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 5 ~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
.++.+|++||+++-.-.........+++...
T Consensus 65 ~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl 95 (472)
T TIGR00769 65 TKLSNILSKEALFYTVISPFLGFFALFAFVI 95 (472)
T ss_pred HHHHhcCCHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4578999999988776666666666665543
No 240
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=24.70 E-value=34 Score=18.40 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.4
Q ss_pred hhhhhhhhhchhH
Q psy16665 3 LSVVLVDKAGRRL 15 (71)
Q Consensus 3 ~~~~l~d~~gRR~ 15 (71)
.+=.++||.|.|.
T Consensus 38 l~N~lID~lGH~E 50 (114)
T PF06939_consen 38 LGNTLIDRLGHKE 50 (114)
T ss_pred HHHHHHHhcccHH
Confidence 3445788888743
No 241
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.54 E-value=1.8e+02 Score=17.79 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=16.4
Q ss_pred hhhc-hhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 9 DKAG-RRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 9 d~~g-RR~lll~g~~~~~~~~~~~~~~~ 35 (71)
|+.. |.+.+..|...+...+.++++.+
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3443 44567777777776666666544
No 242
>KOG3762|consensus
Probab=24.53 E-value=1.3e+02 Score=21.05 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=29.0
Q ss_pred CchhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhh
Q psy16665 1 MGLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFF 36 (71)
Q Consensus 1 ~~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~ 36 (71)
|++|..+++|+|-|...-+-.+.+.+.+.....+..
T Consensus 513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 513 SLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred hhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578889999999999988888888777777665543
No 243
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.18 E-value=82 Score=16.90 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q psy16665 14 RLLLLLSVIIM 24 (71)
Q Consensus 14 R~lll~g~~~~ 24 (71)
|++++..+++.
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 33344333333
No 244
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=23.77 E-value=1.8e+02 Score=17.67 Aligned_cols=55 Identities=22% Similarity=0.278 Sum_probs=32.6
Q ss_pred hhhhhchh---HHHHHHHHHHHHHHHHHHHHhhcccCCCC---------cccccHHHHHHHHHHHHH
Q psy16665 7 LVDKAGRR---LLLLLSVIIMGLCLGVLGFYFFLKNSGSD---------VSSIAFLPLISVIMFIVM 61 (71)
Q Consensus 7 l~d~~gRR---~lll~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 61 (71)
+.|++||| +....|.....+..+.+.+.....+++++ ........++....|.++
T Consensus 72 ~~e~yG~~~Ark~V~~gf~~~lv~~~l~~~~~~~~~~~~~~~~~a~~~~f~~~~RI~lASl~Ayivs 138 (233)
T COG1738 72 TVEIYGKKEARKAVFLGFFSALVFSILTQIALHFPPSGSDEAQEALAALFSFVPRIALASLLAYIVS 138 (233)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45788874 56777777777777766655555443211 122345666666666655
No 245
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=23.01 E-value=1.6e+02 Score=16.78 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy16665 12 GRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 12 gRR~lll~g~~~~~~~~~~ 30 (71)
.||++.++....+.++...
T Consensus 5 ~r~Rl~~il~~~a~l~~a~ 23 (153)
T COG2332 5 RRKRLWIILAGLAGLALAV 23 (153)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3556665555555555443
No 246
>PRK05529 cell division protein FtsQ; Provisional
Probab=22.76 E-value=1.7e+02 Score=17.80 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=11.4
Q ss_pred hhhchhHHHHHHHHHHHHHHH
Q psy16665 9 DKAGRRLLLLLSVIIMGLCLG 29 (71)
Q Consensus 9 d~~gRR~lll~g~~~~~~~~~ 29 (71)
.|..||+.++.+..+..+.++
T Consensus 29 ~~~~~r~~~~~~~~~~~~~l~ 49 (255)
T PRK05529 29 TRIRRRFILLACAVGAVLTLL 49 (255)
T ss_pred hhccchhhhHHHHHHHHHHHH
Confidence 455666666666555333333
No 247
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.39 E-value=1.7e+02 Score=16.78 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHH
Q psy16665 13 RRLLLLLSVIIMGLC 27 (71)
Q Consensus 13 RR~lll~g~~~~~~~ 27 (71)
||+++++......++
T Consensus 6 ~rRl~~v~~~~~~~~ 20 (159)
T PRK13150 6 KNRLWVVCAVLAGLG 20 (159)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555655555443333
No 248
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=21.31 E-value=84 Score=17.76 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHHHHHhhcccccc
Q psy16665 47 IAFLPLISVIMFIVMFSIPWGDK 69 (71)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~~~~ 69 (71)
.-|..+.+++++.+.+-..|+|+
T Consensus 7 ~fwq~I~FlIll~ll~kfawkPI 29 (154)
T PRK06568 7 SFWLAVSFVIFVYLIYRPAKKAI 29 (154)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555556665556666667665
No 249
>PF09885 DUF2112: Uncharacterized protein conserved in archaea (DUF2112); InterPro: IPR012356 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.02 E-value=50 Score=18.43 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=14.3
Q ss_pred chhhhhhhhhchhHHHHHHHH
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVI 22 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~ 22 (71)
++-.-+++|+|.+++.+--.+
T Consensus 11 lIL~dLVeR~GHepL~~~~~i 31 (143)
T PF09885_consen 11 LILADLVERFGHEPLSLMNEI 31 (143)
T ss_pred hHHHHHHHhcCCcchhhHHHH
Confidence 444568899999997654433
No 250
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=20.99 E-value=47 Score=14.22 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=9.5
Q ss_pred chhhhhhhhhchhH
Q psy16665 2 GLSVVLVDKAGRRL 15 (71)
Q Consensus 2 ~~~~~l~d~~gRR~ 15 (71)
+++.|+.-|+.+|-
T Consensus 11 ~va~yLL~R~E~kl 24 (38)
T PF12841_consen 11 AVAIYLLVRIEKKL 24 (38)
T ss_pred HHHHHHHHHHHHHH
Confidence 35667777777765
No 251
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.81 E-value=1.8e+02 Score=16.57 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHH
Q psy16665 13 RRLLLLLSVIIM 24 (71)
Q Consensus 13 RR~lll~g~~~~ 24 (71)
+|+++++.....
T Consensus 6 ~rRl~~v~~~~~ 17 (155)
T PRK13159 6 KQRLWLVIGVLT 17 (155)
T ss_pred hhHHHHHHHHHH
Confidence 455555444433
No 252
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=20.12 E-value=2.2e+02 Score=18.92 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=20.1
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLLLSVIIMGLCLGV 30 (71)
Q Consensus 4 ~~~l~d~~gRR~lll~g~~~~~~~~~~ 30 (71)
...+.|..|-|+.++.+.....+...+
T Consensus 61 vflltd~l~Ykpviil~~~~~i~t~~l 87 (412)
T PF01770_consen 61 VFLLTDYLRYKPVIILQALSYIITWLL 87 (412)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345789999999998888766555444
No 253
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.10 E-value=18 Score=18.62 Aligned_cols=9 Identities=44% Similarity=0.756 Sum_probs=5.6
Q ss_pred hhhhchhHH
Q psy16665 8 VDKAGRRLL 16 (71)
Q Consensus 8 ~d~~gRR~l 16 (71)
+|.+|||++
T Consensus 44 ~~~wG~r~L 52 (97)
T CHL00123 44 VQNRGKRKL 52 (97)
T ss_pred EEeecCeee
Confidence 356777764
Done!