Query psy16665
Match_columns 71
No_of_seqs 119 out of 1085
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:53:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 98.6 1.7E-07 5.9E-12 57.5 5.9 63 2-71 330-392 (491)
2 4gc0_A D-xylose-proton symport 97.2 0.00028 9.5E-09 43.3 3.3 30 3-32 74-103 (491)
3 3o7q_A L-fucose-proton symport 96.8 0.0054 1.9E-07 36.9 6.1 30 3-32 80-109 (438)
4 1pw4_A Glycerol-3-phosphate tr 96.7 0.0045 1.5E-07 37.3 5.6 31 3-33 81-111 (451)
5 4aps_A DI-OR tripeptide H+ sym 96.2 0.02 7E-07 35.0 6.2 30 3-32 73-103 (491)
6 2gfp_A EMRD, multidrug resista 96.0 0.0066 2.3E-07 36.0 3.5 31 3-33 54-84 (375)
7 2xut_A Proton/peptide symporte 95.9 0.03 1E-06 34.6 6.0 30 3-32 73-103 (524)
8 3o7q_A L-fucose-proton symport 95.7 0.026 8.9E-07 33.9 5.2 30 3-32 314-343 (438)
9 2cfq_A Lactose permease; trans 95.3 0.019 6.6E-07 34.8 3.6 29 3-31 278-306 (417)
10 2cfq_A Lactose permease; trans 94.6 0.011 3.9E-07 35.8 1.3 23 3-25 62-84 (417)
11 4aps_A DI-OR tripeptide H+ sym 94.2 0.082 2.8E-06 32.3 4.4 30 4-33 339-373 (491)
12 1pw4_A Glycerol-3-phosphate tr 91.7 0.39 1.3E-05 28.8 4.8 27 3-29 307-336 (451)
13 3arc_J Photosystem II reaction 86.0 1.1 3.6E-05 18.9 2.7 28 8-35 2-29 (40)
14 2g9p_A Antimicrobial peptide l 76.2 1.2 4E-05 16.5 0.9 13 5-17 4-16 (26)
15 1cmk_I CAMP-dependent protein 58.1 1.9 6.5E-05 16.4 -0.1 9 8-16 9-17 (26)
16 2jpj_A Bacteriocin lactococcin 27.0 16 0.00053 14.9 0.2 8 8-15 30-37 (39)
17 2qnu_A Uncharacterized protein 21.6 17 0.00058 20.9 -0.3 10 8-17 80-89 (226)
18 3rq0_A Glycosyl hydrolases fam 21.3 20 0.00068 21.2 0.0 19 8-26 4-22 (269)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.55 E-value=1.7e-07 Score=57.46 Aligned_cols=63 Identities=25% Similarity=0.549 Sum_probs=48.8
Q ss_pred chhhhhhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccHHHHHHHHHHHHHhhcccccccC
Q psy16665 2 GLSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPWGDKNL 71 (71)
Q Consensus 2 ~~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 71 (71)
+++.+++||+|||+.++.+...+.++++.++..... ....+..+..++++..+++.+++|++|
T Consensus 330 ~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 330 VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356788999999999999999999988877754322 234566777777888889988888754
No 2
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.21 E-value=0.00028 Score=43.25 Aligned_cols=30 Identities=17% Similarity=0.097 Sum_probs=24.6
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+..++.||+|||+.++.+.....++.+..+
T Consensus 74 ~~G~laDr~GRk~~l~~~~~l~~i~~i~~a 103 (491)
T 4gc0_A 74 LGGYCSNRFGRRDSLKIAAVLFFISGVGSA 103 (491)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999988887766554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=96.75 E-value=0.0054 Score=36.88 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=25.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
+...+.||+|||+.++.+.....++.+...
T Consensus 80 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 109 (438)
T 3o7q_A 80 PAGILMKKLSYKAGIITGLFLYALGAALFW 109 (438)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998888877663
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.73 E-value=0.0045 Score=37.31 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=26.2
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+...+.||+|||+.++.+.....++.+..+.
T Consensus 81 ~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 81 IMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999988888777664
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.18 E-value=0.02 Score=35.02 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.9
Q ss_pred hhhhhhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDK-AGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~-~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.|| +|||+.++.+.....++.+..+
T Consensus 73 ~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 45678999 8999999999988887776654
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.05 E-value=0.0066 Score=35.95 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=24.8
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~~ 33 (71)
+..++.||+|||+.++.+.....++.+....
T Consensus 54 ~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 54 FYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp THHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 4567899999999999988888777666543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.87 E-value=0.03 Score=34.62 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=24.4
Q ss_pred hhhhhhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKA-GRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~-gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+ |||+.++.+.....++.+..+
T Consensus 73 ~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (524)
T 2xut_A 73 LGGWIADRFFGKYNTILWLSLIYCVGHAFLA 103 (524)
T ss_dssp HHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 456789999 999999998888777766654
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=95.71 E-value=0.026 Score=33.88 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=23.5
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLG 32 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~~ 32 (71)
++.++.||+|||+++..+.....++.+.+.
T Consensus 314 ~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~ 343 (438)
T 3o7q_A 314 TGTWLISRFAPHKVLAAYALIAMALCLISA 343 (438)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 456788999999999988887777655543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.30 E-value=0.019 Score=34.79 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=22.0
Q ss_pred hhhhhhhhhchhHHHHHHHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVL 31 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~~~~~~~ 31 (71)
+..++.||+|||+++..+.....+..+.+
T Consensus 278 ~~g~l~dr~g~~~~l~~~~~~~~~~~~~~ 306 (417)
T 2cfq_A 278 FAPLIINRIGGKNALLLAGTIMSVRIIGS 306 (417)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988877776665444
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=94.62 E-value=0.011 Score=35.81 Aligned_cols=23 Identities=39% Similarity=0.289 Sum_probs=18.4
Q ss_pred hhhhhhhhhchhHHHHHHHHHHH
Q psy16665 3 LSVVLVDKAGRRLLLLLSVIIMG 25 (71)
Q Consensus 3 ~~~~l~d~~gRR~lll~g~~~~~ 25 (71)
+..++.||+|||+.++.+.....
T Consensus 62 ~~G~lsDr~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 62 LFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 45678999999999988776553
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.17 E-value=0.082 Score=32.33 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=18.5
Q ss_pred hhhhhhhhchhHHHH-----HHHHHHHHHHHHHHH
Q psy16665 4 SVVLVDKAGRRLLLL-----LSVIIMGLCLGVLGF 33 (71)
Q Consensus 4 ~~~l~d~~gRR~lll-----~g~~~~~~~~~~~~~ 33 (71)
..++.||+|||+... .+...+.++...+..
T Consensus 339 ~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 339 FAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 456889999987655 666666666555544
No 12
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=91.74 E-value=0.39 Score=28.79 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=19.4
Q ss_pred hhhhhhhhh--chhHHHHHHHHHHH-HHHH
Q psy16665 3 LSVVLVDKA--GRRLLLLLSVIIMG-LCLG 29 (71)
Q Consensus 3 ~~~~l~d~~--gRR~lll~g~~~~~-~~~~ 29 (71)
+..++.||+ |||+.+..+..... ++.+
T Consensus 307 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (451)
T 1pw4_A 307 LCGWMSDKVFRGNRGATGVFFMTLVTIATI 336 (451)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 456788999 99998887776555 4433
No 13
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=85.99 E-value=1.1 Score=18.90 Aligned_cols=28 Identities=18% Similarity=0.422 Sum_probs=18.5
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy16665 8 VDKAGRRLLLLLSVIIMGLCLGVLGFYF 35 (71)
Q Consensus 8 ~d~~gRR~lll~g~~~~~~~~~~~~~~~ 35 (71)
+|..||-|+.+++.+.-....-.+++++
T Consensus 2 m~~tGRiPLWlvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 2 MSEGGRIPLWIVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp -CCTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcccEEeeeeehhhhhhheeeEEE
Confidence 4667999998888876555555555443
No 14
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=76.18 E-value=1.2 Score=16.53 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=9.8
Q ss_pred hhhhhhhchhHHH
Q psy16665 5 VVLVDKAGRRLLL 17 (71)
Q Consensus 5 ~~l~d~~gRR~ll 17 (71)
..++.|+|||.+-
T Consensus 4 gklikkfgrkais 16 (26)
T 2g9p_A 4 GKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHTSHHHH
T ss_pred HHHHHHHhHHHHH
Confidence 3578999999753
No 15
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=58.12 E-value=1.9 Score=16.44 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=6.7
Q ss_pred hhhhchhHH
Q psy16665 8 VDKAGRRLL 16 (71)
Q Consensus 8 ~d~~gRR~l 16 (71)
.||.|||--
T Consensus 9 ~~RtGRRNA 17 (26)
T 1cmk_I 9 SGRTGRRNA 17 (26)
T ss_pred cCccccccc
Confidence 478999853
No 16
>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A
Probab=27.03 E-value=16 Score=14.92 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=5.5
Q ss_pred hhhhchhH
Q psy16665 8 VDKAGRRL 15 (71)
Q Consensus 8 ~d~~gRR~ 15 (71)
.||+.||+
T Consensus 30 a~rinrkk 37 (39)
T 2jpj_A 30 ASRINRKK 37 (39)
T ss_dssp HHHHHGGG
T ss_pred HHHhhhhc
Confidence 46777775
No 17
>2qnu_A Uncharacterized protein PA0076; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MLZ PGE; 2.05A {Pseudomonas aeruginosa PAO1}
Probab=21.60 E-value=17 Score=20.91 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=7.1
Q ss_pred hhhhchhHHH
Q psy16665 8 VDKAGRRLLL 17 (71)
Q Consensus 8 ~d~~gRR~ll 17 (71)
.||+|||..+
T Consensus 80 ~DrvGR~fPl 89 (226)
T 2qnu_A 80 IDRVGRYFPL 89 (226)
T ss_dssp BCTTSCBCCE
T ss_pred ccccCCcCce
Confidence 4888887654
No 18
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=21.34 E-value=20 Score=21.16 Aligned_cols=19 Identities=32% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhhchhHHHHHHHHHHHH
Q psy16665 8 VDKAGRRLLLLLSVIIMGL 26 (71)
Q Consensus 8 ~d~~gRR~lll~g~~~~~~ 26 (71)
+-+..||++++....+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (269)
T 3rq0_A 4 MANVDRRQMLLLSGLGATA 22 (269)
T ss_dssp -------------------
T ss_pred chhccchhHHHHHHHHHHH
Confidence 4567799988875554433
Done!