RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16665
(71 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 40.0 bits (94), Expect = 2e-05
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
+++ LVD+ GRR LLL+ M +CL VLG +GS S + ++ +++FI F
Sbjct: 338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFF 396
Query: 63 SIPWG 67
++ WG
Sbjct: 397 AMGWG 401
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 35.0 bits (81), Expect = 0.001
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
++ LVD+ GRR LLLL M +C VLG + ++ +++FI F+
Sbjct: 306 AIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK---SKGAGIVAIVFILLFIAFFA 362
Query: 64 IPWG 67
+ WG
Sbjct: 363 LGWG 366
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 33.5 bits (77), Expect = 0.004
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMF 62
L+++ VDK GR+ L ++ + M + + LG F+ + G + L+S++ ++ F
Sbjct: 325 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-------VALLSMLFYVAAF 377
Query: 63 SIPWG 67
++ WG
Sbjct: 378 AMSWG 382
>gnl|CDD|235909 PRK07021, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 162
Score = 26.8 bits (60), Expect = 0.81
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 13 RRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVM 61
R+L L++ ++++ G+ ++L + ++ A +F +
Sbjct: 16 RKLWLIILILLLLAAAAGAGYSWWLSKEQATAAAKAAPAPPPAPVFFPL 64
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 26.9 bits (60), Expect = 0.85
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 14 RLLLLLSVIIMGLCLGVLGFYFFLK------NSGSDVSSIAFLPLISVIMFI 59
R LL+L+ ++ GL G +G F L S D+ + LP++ VI I
Sbjct: 413 RPLLMLAGLLGGLGAG-IGLAFLLSQLRPTVRSVRDLRELTGLPVLGVIPMI 463
>gnl|CDD|182695 PRK10747, PRK10747, putative protoheme IX biogenesis protein;
Provisional.
Length = 398
Score = 26.6 bits (59), Expect = 0.86
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 14 RLLLLLSVIIMGLCLG--VLGF--YFFLKNSGSDV-SSIAFLPLISVIMFIVMFSIPW 66
++LLL ++I G+ +G + G Y ++ ++ +S+ L +I ++ +V+F+I W
Sbjct: 3 KVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGLAIILILAMVVLFAIEW 60
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 25.8 bits (57), Expect = 1.6
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 13 RRLLLLLSVIIMGLCLG---------VLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
RR+LLL +++ G+ +G VL N ++S + + +I +V++
Sbjct: 2 RRVLLLFVLLLAGIGVGLAIAGQQGYVLIQT---DNYNIEMSLTTLVIFL-IIALVVLYL 57
Query: 64 IPWG 67
+ W
Sbjct: 58 LEWL 61
>gnl|CDD|217378 pfam03124, EXS, EXS family. We have named this region the EXS
family after (ERD1, XPR1, and SYG1). This family
includes C-terminus portions from the SYG1 G-protein
associated signal transduction protein from
Saccharomyces cerevisiae, and sequences that are thought
to be murine leukaemia virus (MLV) receptors (XPR1).
N-terminus portions from these proteins are aligned in
the SPX pfam03105 family. The previously noted
similarity between SYG1 and MLV receptors over their
whole sequences is thus borne out in pfam03105 and this
family. While the N-termini aligned in pfam03105 are
thought to be involved in signal transduction, the role
of the C-terminus sequences aligned in this family is
not known. This region of similarity contains several
predicted transmembrane helices. This family also
includes the ERD1 (ERD: ER retention defective) yeast
proteins. ERD1 proteins are involved in the localisation
of endogenous endoplasmic reticulum (ER) proteins. erd1
null mutants secrete such proteins even though they
possess the C-terminal HDEL ER lumen localisation label
sequence. In addition, null mutants also exhibit defects
in the Golgi-dependent processing of several
glycoproteins, which led to the suggestion that the
sorting of luminal ER proteins actually occurs in the
Golgi, with subsequent return of these proteins to the
ER via `salvage' vesicles.
Length = 337
Score = 25.7 bits (57), Expect = 1.9
Identities = 11/54 (20%), Positives = 25/54 (46%)
Query: 13 RRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFSIPW 66
R LL L S + L L + + +S +PL+ +++ +++ +P+
Sbjct: 48 RELLELASFFTVLWLLSFLLYLLLEHLELTKPASWVQVPLVLLLIVLLILFLPF 101
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 25.8 bits (57), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 20 SVIIMGLCLGVLG--FYFFLKNSGSDVSSIAFLP 51
S++I G G +G F + LKN G DV+ + FL
Sbjct: 174 SIVIAGA--GAIGMEFAYVLKNYGVDVTIVEFLD 205
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in
two-component regulatory system with RcsBC; Provisional.
Length = 894
Score = 25.7 bits (57), Expect = 2.3
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSG 41
L +L+D L LL + + L L + G+Y F G
Sbjct: 291 LGTLLLDLLQNNLWPLLLNLGL-LALSLFGYYTFRHQYG 328
>gnl|CDD|222572 pfam14155, DUF4307, Domain of unknown function (DUF4307). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are typically between 132 and 153 amino
acids in length. There is a single completely conserved
residue C that may be functionally important.
Length = 112
Score = 24.9 bits (55), Expect = 3.0
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 13 RRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSS--IAF 49
RR LL + +++ + L ++ + + + G DVS+ I F
Sbjct: 3 RRKLLAVGAVLVVVALVLVAWIGYQQVGGPDVSAEVIGF 41
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 25.1 bits (55), Expect = 3.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 4 SVVLVDKAGRRLLLLLSVIIMGLCLGVLGFYF 35
+V LVD GR+ + L+ I+ + VLGF +
Sbjct: 355 TVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY 386
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 25.1 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 9 DKAGRRLLLLLSVIIMGLCLGVLGFYF 35
K + LL++LSV + L G FYF
Sbjct: 30 LKGKKSLLVVLSVSAICLVAGSA-FYF 55
>gnl|CDD|235476 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 605
Score = 24.8 bits (55), Expect = 4.3
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 13 RRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFIVMFS 63
RRL+LL + + L G + A L L +++ +
Sbjct: 41 RRLILLGLTLAQTA-VATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLG 90
>gnl|CDD|224475 COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport
and metabolism].
Length = 342
Score = 24.5 bits (54), Expect = 5.2
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 10 KAGRRLLLLLSVIIMGLCLGVLGFYFFL 37
K LL+ V+++ L LG +G+ L
Sbjct: 5 KKKLLKTLLVLVLVLLLILGGVGYIGIL 32
>gnl|CDD|224496 COG1580, FliL, Flagellar basal body-associated protein [Cell
motility and secretion].
Length = 159
Score = 24.6 bits (54), Expect = 5.2
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 8 VDKAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGS 42
K +LL+ +I++ G F++F S
Sbjct: 12 KKKKKSLWILLIVLIVLLALAGAGYFFWFGSKSED 46
>gnl|CDD|166864 PRK00234, PRK00234, Maf-like protein; Reviewed.
Length = 192
Score = 24.3 bits (53), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 31 LGFYFFLKNSGSDVSSIAFLPLISVI 56
LG F G D +S+ LPLI ++
Sbjct: 156 LGVSLFRSTEGEDATSLIGLPLIRLV 181
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 24.6 bits (54), Expect = 5.8
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 3 LSVVLVDKAGRRLLLLLSVIIMGLCLGVLGF 33
++++L+D+ GRR + S+++ G+ L +L F
Sbjct: 374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLF 404
>gnl|CDD|222083 pfam13373, DUF2407_C, DUF2407 C-terminal domain. This is a family
of proteins found in fungi. The function is not known.
There is a characteristic GFDRL sequence motif.
Length = 130
Score = 24.1 bits (53), Expect = 6.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 18 LLSVIIMGLCLGVLGFYFFLKNSG 41
LL ++MG LGV + L+ G
Sbjct: 82 LLIGMLMGFFLGVGSLVWLLREEG 105
>gnl|CDD|183743 PRK12785, fliL, flagellar basal body-associated protein FliL;
Reviewed.
Length = 166
Score = 24.2 bits (53), Expect = 6.1
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 10 KAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSD 43
++ L++++ + L G G +FF + G
Sbjct: 20 PKKKKKLIIIAAAAVLLLGGGGGGFFFFFSHGHG 53
>gnl|CDD|218809 pfam05915, DUF872, Eukaryotic protein of unknown function
(DUF872). This family consists of several
uncharacterized eukaryotic proteins. The function of
this family is unknown.
Length = 108
Score = 23.9 bits (52), Expect = 6.6
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 13 RRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISVIMFI 59
+ + L ++++G L V+G + F D S ++ +++FI
Sbjct: 35 KVIALAFLLLLLGALLLVIGVFIFTGPMEGDGSQAYVFFVLGILLFI 81
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc
[Transport and binding proteins, Unknown substrate].
Length = 394
Score = 24.2 bits (53), Expect = 8.0
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 9 DKAGRRLLLLLSVIIMGLCLGVLG 32
D+ GR+ L++++++MG+ ++G
Sbjct: 60 DRIGRKKTLVITLLMMGIGTLLIG 83
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 23.8 bits (52), Expect = 9.5
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 10 KAGRRLLLLLSVIIMGLCLGVLGFYFFLKNSGSDVSSIAFLPLISV----IMFIVMFSIP 65
K G+RL+ ++ II+ G+L F L + F + + I +MFS+P
Sbjct: 248 KLGKRLVFVVLFIIVLCGSGILALSFDLIPLLRTFLNHIFENSLFLYPLLICPTIMFSVP 307
>gnl|CDD|147008 pfam04639, Baculo_E56, Baculoviral E56 protein, specific to ODV
envelope. This family represents the E56 protein, which
is localises to the occlusion derived virus (ODV)
envelope, but not to the budded virus (BV) envelope.
Length = 308
Score = 23.8 bits (52), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 38 KNSGSDVSSIAFLPLISVIMFIV 60
NS VS + LP+I VI ++
Sbjct: 269 SNSSKSVSD-SLLPIILVIGGVL 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.334 0.151 0.450
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,670,425
Number of extensions: 303948
Number of successful extensions: 1756
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1708
Number of HSP's successfully gapped: 308
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 53 (24.0 bits)