RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16665
         (71 letters)



>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
           oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
           2rgo_A*
          Length = 571

 Score = 25.4 bits (56), Expect = 1.9
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 7/28 (25%)

Query: 49  FLPLISVIMFI-------VMFSIPWGDK 69
            LP+     F        ++F+IP  +K
Sbjct: 280 KLPVPQPTYFDTGKQDGRMVFAIPRENK 307


>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
           structural genomics, PSI-2, protein structure
           initiative; HET: FAD; 2.70A {Bacillus halodurans}
          Length = 561

 Score = 24.2 bits (53), Expect = 4.6
 Identities = 4/10 (40%), Positives = 7/10 (70%)

Query: 60  VMFSIPWGDK 69
           ++F+IP   K
Sbjct: 278 MIFAIPREGK 287


>2g3m_A Maltase, alpha-glucosidase; hydrolase, glycoside hydrolase family
           31, multidomain protein, (beta/alpha)8 barrel, retaining
           mechanism; 2.55A {Sulfolobus solfataricus} PDB: 2g3n_A*
          Length = 693

 Score = 23.9 bits (52), Expect = 6.1
 Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 4/23 (17%)

Query: 22  IIMGLCLGVLGFYFFLKNSGSDV 44
           + + L L + G  F     G D+
Sbjct: 428 LQLVLGLSISGVPF----VGCDI 446


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.151    0.450 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,021,877
Number of extensions: 47864
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 18
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.7 bits)