RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16665
         (71 letters)



>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
          subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 23.8 bits (50), Expect = 2.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 31 LGFYFFLKNSGSDVSSIAF 49
          L FY  L  SG  VS +  
Sbjct: 1  LQFYRNLGKSGLRVSCLGL 19


>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor
          {African clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 184

 Score = 23.3 bits (50), Expect = 3.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 8  VDKAGRRLLLLLSVIIMGL 26
          V K GRR+  +L V + GL
Sbjct: 24 VTKNGRRMFPVLKVSMSGL 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.151    0.450 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,070
Number of extensions: 8259
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 15
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.7 bits)