Query psy16666
Match_columns 167
No_of_seqs 258 out of 1093
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 18:55:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16666.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16666hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12382 putative transporter; 99.8 1.3E-17 2.8E-22 124.5 16.5 155 4-159 6-173 (392)
2 PRK10054 putative transporter; 99.8 8.3E-17 1.8E-21 120.5 18.0 149 10-159 4-157 (395)
3 PRK05122 major facilitator sup 99.8 4.8E-17 1E-21 121.7 15.2 151 8-159 10-173 (399)
4 PRK11195 lysophospholipid tran 99.7 1.4E-16 3.1E-21 119.2 16.6 146 12-160 2-150 (393)
5 PRK09874 drug efflux system pr 99.7 3.6E-16 7.9E-21 117.0 17.2 149 10-159 11-167 (408)
6 PRK11646 multidrug resistance 99.7 4.4E-16 9.6E-21 116.8 17.6 143 16-159 13-160 (400)
7 PRK03633 putative MFS family t 99.7 2.8E-16 6E-21 117.0 16.0 147 11-159 4-155 (381)
8 PRK10213 nepI ribonucleoside t 99.7 8.4E-16 1.8E-20 115.1 18.3 127 33-160 39-170 (394)
9 PRK03545 putative arabinose tr 99.7 5.2E-16 1.1E-20 115.9 16.8 127 33-160 28-159 (390)
10 KOG2615|consensus 99.7 3.8E-17 8.3E-22 118.3 9.5 112 48-159 66-181 (451)
11 PRK10504 putative transporter; 99.7 1.2E-15 2.5E-20 116.6 17.3 147 12-160 9-160 (471)
12 COG2814 AraJ Arabinose efflux 99.7 2.4E-15 5.2E-20 110.8 17.5 149 10-160 10-163 (394)
13 TIGR00891 2A0112 putative sial 99.7 1.6E-15 3.4E-20 113.2 17.0 143 16-160 15-162 (405)
14 TIGR00900 2A0121 H+ Antiporter 99.7 9.7E-16 2.1E-20 112.7 15.5 141 18-160 4-154 (365)
15 TIGR00710 efflux_Bcr_CflA drug 99.7 1.6E-15 3.4E-20 112.6 15.7 137 22-160 14-155 (385)
16 TIGR00897 2A0118 polyol permea 99.7 1.2E-15 2.6E-20 114.4 15.1 155 3-159 3-167 (402)
17 PRK12307 putative sialic acid 99.7 2.1E-15 4.6E-20 113.6 16.1 142 15-158 20-166 (426)
18 TIGR02332 HpaX 4-hydroxyphenyl 99.7 2.3E-15 5.1E-20 113.3 16.2 126 33-159 27-157 (412)
19 PRK11551 putative 3-hydroxyphe 99.7 4.4E-15 9.5E-20 111.3 16.3 125 33-158 34-163 (406)
20 PRK10091 MFS transport protein 99.7 4.8E-15 1E-19 110.5 16.4 145 13-159 3-152 (382)
21 TIGR00886 2A0108 nitrite extru 99.7 3.7E-15 7.9E-20 110.1 15.5 144 15-159 3-151 (366)
22 PF07690 MFS_1: Major Facilita 99.7 3.3E-15 7.1E-20 109.4 14.7 138 20-159 3-146 (352)
23 TIGR00711 efflux_EmrB drug res 99.7 6.2E-15 1.3E-19 112.7 16.3 141 17-159 6-151 (485)
24 PRK14995 methyl viologen resis 99.7 7.8E-15 1.7E-19 112.9 16.6 142 17-160 10-157 (495)
25 TIGR00924 yjdL_sub1_fam amino 99.7 4.2E-15 9.1E-20 113.8 14.6 150 10-160 7-167 (475)
26 TIGR00903 2A0129 major facilit 99.7 6.7E-15 1.5E-19 109.3 14.5 126 33-159 10-139 (368)
27 PRK15403 multidrug efflux syst 99.6 2.2E-14 4.8E-19 108.1 16.6 127 33-160 35-166 (413)
28 PRK03699 putative transporter; 99.6 1.9E-14 4E-19 107.8 15.8 147 11-159 5-156 (394)
29 PRK10133 L-fucose transporter; 99.6 3.4E-14 7.4E-19 107.8 17.2 141 16-158 29-177 (438)
30 PRK10473 multidrug efflux syst 99.6 2.8E-14 6.1E-19 106.6 16.6 142 16-159 6-152 (392)
31 PRK10489 enterobactin exporter 99.6 2.9E-15 6.2E-20 112.8 11.3 149 10-160 14-172 (417)
32 cd06174 MFS The Major Facilita 99.6 9.7E-15 2.1E-19 106.6 13.8 141 18-160 4-149 (352)
33 TIGR01299 synapt_SV2 synaptic 99.6 3.4E-14 7.3E-19 113.2 17.4 125 33-158 186-315 (742)
34 PRK10207 dipeptide/tripeptide 99.6 1.6E-14 3.4E-19 111.0 15.1 151 9-160 10-169 (489)
35 PRK11663 regulatory protein Uh 99.6 1.9E-14 4.1E-19 109.1 15.3 126 33-159 42-172 (434)
36 TIGR00895 2A0115 benzoate tran 99.6 1.7E-14 3.8E-19 107.2 14.3 127 33-160 36-167 (398)
37 PRK15402 multidrug efflux syst 99.6 1.6E-14 3.6E-19 108.3 14.2 127 33-160 32-163 (406)
38 PRK03893 putative sialic acid 99.6 5.2E-14 1.1E-18 108.1 17.2 141 17-159 24-169 (496)
39 PRK11652 emrD multidrug resist 99.6 4.6E-14 1E-18 105.5 16.1 134 24-159 19-157 (394)
40 PRK10077 xylE D-xylose transpo 99.6 2.7E-14 5.8E-19 109.2 14.7 125 33-157 31-179 (479)
41 TIGR00885 fucP L-fucose:H+ sym 99.6 9E-14 2E-18 104.7 17.2 144 15-160 5-156 (410)
42 KOG1330|consensus 99.6 3E-15 6.5E-20 111.0 8.5 144 17-162 37-185 (493)
43 PRK10406 alpha-ketoglutarate t 99.6 9.1E-14 2E-18 105.3 16.5 103 53-155 66-181 (432)
44 PRK15034 nitrate/nitrite trans 99.6 8.2E-14 1.8E-18 105.5 16.0 133 13-147 34-174 (462)
45 PLN00028 nitrate transmembrane 99.6 1.1E-13 2.4E-18 106.1 16.9 124 33-157 55-182 (476)
46 PF05977 MFS_3: Transmembrane 99.6 1.3E-13 2.9E-18 106.2 17.3 151 8-160 5-165 (524)
47 PRK15075 citrate-proton sympor 99.6 6.8E-14 1.5E-18 106.0 15.4 141 17-158 19-177 (434)
48 PRK11043 putative transporter; 99.6 1.5E-13 3.2E-18 103.0 16.8 136 23-160 16-156 (401)
49 PRK11102 bicyclomycin/multidru 99.6 5.5E-14 1.2E-18 104.3 14.1 127 33-160 10-141 (377)
50 TIGR00806 rfc RFC reduced fola 99.6 1.9E-13 4.2E-18 102.9 16.9 121 38-158 50-174 (511)
51 PRK09705 cynX putative cyanate 99.6 7.2E-14 1.6E-18 104.6 14.4 125 33-159 28-157 (393)
52 PRK15462 dipeptide/tripeptide 99.6 9.1E-14 2E-18 106.2 15.0 149 10-159 6-163 (493)
53 TIGR00893 2A0114 d-galactonate 99.6 3E-14 6.6E-19 105.4 12.3 126 33-159 13-143 (399)
54 PRK09556 uhpT sugar phosphate 99.6 3.8E-15 8.2E-20 113.8 7.6 124 34-158 49-182 (467)
55 TIGR00902 2A0127 phenyl propri 99.6 4.8E-13 1E-17 99.8 17.7 148 11-161 203-356 (382)
56 TIGR00900 2A0121 H+ Antiporter 99.6 4.2E-13 9.2E-18 98.7 17.0 149 12-160 209-363 (365)
57 TIGR00899 2A0120 sugar efflux 99.6 2.3E-13 4.9E-18 100.8 15.1 140 20-160 4-151 (375)
58 PRK10642 proline/glycine betai 99.6 2.3E-13 5.1E-18 104.6 15.5 136 18-154 21-174 (490)
59 PRK08633 2-acyl-glycerophospho 99.6 2.2E-13 4.7E-18 113.8 15.9 152 9-160 5-165 (1146)
60 TIGR00887 2A0109 phosphate:H+ 99.6 5.2E-13 1.1E-17 103.0 16.5 112 47-158 53-175 (502)
61 KOG3764|consensus 99.5 5.2E-14 1.1E-18 102.8 10.0 116 47-162 103-224 (464)
62 PRK11551 putative 3-hydroxyphe 99.5 6.7E-13 1.4E-17 99.5 16.0 127 33-160 239-370 (406)
63 PRK09556 uhpT sugar phosphate 99.5 1.1E-12 2.3E-17 100.4 16.9 147 12-159 257-411 (467)
64 TIGR00890 2A0111 Oxalate/Forma 99.5 4E-13 8.6E-18 99.1 13.8 113 33-147 22-137 (377)
65 TIGR00889 2A0110 nucleoside tr 99.5 7.2E-13 1.6E-17 100.1 15.4 148 13-161 208-372 (418)
66 TIGR00879 SP MFS transporter, 99.5 4E-13 8.6E-18 102.0 14.1 106 49-154 70-183 (481)
67 TIGR01299 synapt_SV2 synaptic 99.5 1.1E-12 2.3E-17 104.7 16.9 107 54-160 599-710 (742)
68 TIGR00893 2A0114 d-galactonate 99.5 6.7E-13 1.5E-17 98.3 14.5 149 11-160 213-373 (399)
69 cd06174 MFS The Major Facilita 99.5 1.5E-12 3.2E-17 95.1 16.0 145 15-160 177-327 (352)
70 TIGR00890 2A0111 Oxalate/Forma 99.5 9.4E-13 2E-17 97.1 14.8 147 12-160 204-357 (377)
71 TIGR00891 2A0112 putative sial 99.5 1.2E-12 2.6E-17 97.6 15.0 129 34-162 258-392 (405)
72 TIGR00881 2A0104 phosphoglycer 99.5 7.5E-14 1.6E-18 103.0 8.4 125 33-158 14-144 (379)
73 COG2223 NarK Nitrate/nitrite t 99.5 3.3E-13 7.2E-18 99.2 11.5 146 8-156 9-165 (417)
74 TIGR00883 2A0106 metabolite-pr 99.5 9.1E-13 2E-17 97.8 13.9 147 15-162 221-377 (394)
75 PRK06814 acylglycerophosphoeth 99.5 7.5E-13 1.6E-17 110.7 14.7 153 9-161 7-171 (1140)
76 PRK09584 tppB putative tripept 99.5 1.4E-12 3.1E-17 100.5 15.1 148 12-160 20-176 (500)
77 TIGR00899 2A0120 sugar efflux 99.5 3.3E-12 7.2E-17 94.6 16.6 147 12-160 198-349 (375)
78 PRK11273 glpT sn-glycerol-3-ph 99.5 7.7E-13 1.7E-17 100.8 13.2 111 35-147 50-167 (452)
79 PRK15011 sugar efflux transpor 99.5 4.8E-12 1E-16 94.8 17.3 127 33-160 235-366 (393)
80 TIGR00711 efflux_EmrB drug res 99.5 3E-12 6.6E-17 98.0 16.4 148 11-159 253-409 (485)
81 TIGR00882 2A0105 oligosacchari 99.5 1.4E-12 3E-17 97.7 13.8 146 12-160 1-159 (396)
82 TIGR00895 2A0115 benzoate tran 99.5 6.1E-12 1.3E-16 93.5 16.9 124 33-157 269-397 (398)
83 PRK03633 putative MFS family t 99.5 8.5E-12 1.8E-16 93.0 17.3 127 33-161 219-348 (381)
84 PRK10504 putative transporter; 99.5 5.5E-12 1.2E-16 96.4 16.5 150 11-161 259-416 (471)
85 TIGR00902 2A0127 phenyl propri 99.5 2.8E-12 6.1E-17 95.7 14.4 143 14-160 5-154 (382)
86 PRK09952 shikimate transporter 99.5 2.9E-12 6.3E-17 97.3 14.6 100 58-157 72-184 (438)
87 PRK14995 methyl viologen resis 99.5 6.7E-12 1.5E-16 96.7 16.6 148 12-160 258-413 (495)
88 PRK10642 proline/glycine betai 99.5 8.3E-12 1.8E-16 96.1 17.1 128 33-160 269-404 (490)
89 TIGR00892 2A0113 monocarboxyla 99.5 4.4E-12 9.5E-17 96.8 15.3 124 34-159 39-168 (455)
90 PRK09952 shikimate transporter 99.5 1.3E-11 2.9E-16 93.7 17.8 129 33-161 269-407 (438)
91 PRK03699 putative transporter; 99.5 9.7E-12 2.1E-16 93.2 16.7 146 13-160 205-355 (394)
92 PRK09528 lacY galactoside perm 99.5 2.7E-12 5.9E-17 96.8 13.7 149 9-160 6-167 (420)
93 TIGR00894 2A0114euk Na(+)-depe 99.5 9.9E-13 2.1E-17 100.4 11.4 114 47-160 73-193 (465)
94 PRK15011 sugar efflux transpor 99.5 1.5E-11 3.3E-16 92.1 17.5 148 11-159 13-168 (393)
95 TIGR00898 2A0119 cation transp 99.5 4.2E-13 9.1E-18 103.4 9.3 123 36-158 111-240 (505)
96 PRK09705 cynX putative cyanate 99.5 1.3E-11 2.8E-16 92.6 17.0 147 11-161 203-356 (393)
97 PRK10489 enterobactin exporter 99.5 9.9E-12 2.1E-16 93.7 16.4 128 33-160 242-374 (417)
98 TIGR00897 2A0118 polyol permea 99.5 1.5E-11 3.3E-16 92.3 17.3 146 12-160 221-376 (402)
99 TIGR00712 glpT glycerol-3-phos 99.5 2E-12 4.3E-17 98.1 12.6 121 36-158 49-178 (438)
100 TIGR00896 CynX cyanate transpo 99.4 3.1E-11 6.8E-16 89.1 17.9 150 11-163 195-351 (355)
101 PRK03545 putative arabinose tr 99.4 1.7E-11 3.8E-16 91.6 16.3 146 12-160 204-355 (390)
102 PF11700 ATG22: Vacuole efflux 99.4 2.5E-11 5.5E-16 92.9 16.9 155 10-165 278-447 (477)
103 PRK03893 putative sialic acid 99.4 6.3E-12 1.4E-16 96.6 13.5 128 33-160 294-428 (496)
104 PRK11128 putative 3-phenylprop 99.4 4.1E-11 9E-16 89.4 17.4 147 12-161 204-356 (382)
105 PRK11128 putative 3-phenylprop 99.4 5.9E-12 1.3E-16 94.0 12.8 136 21-160 12-154 (382)
106 COG2814 AraJ Arabinose efflux 99.4 2.7E-11 5.9E-16 89.6 15.8 148 10-160 208-361 (394)
107 PRK12382 putative transporter; 99.4 1.6E-11 3.5E-16 91.8 14.9 125 33-160 235-364 (392)
108 TIGR00896 CynX cyanate transpo 99.4 6E-12 1.3E-16 92.9 11.9 126 33-160 19-148 (355)
109 PRK09874 drug efflux system pr 99.4 1.8E-11 3.9E-16 91.7 14.6 128 33-160 238-373 (408)
110 PRK15075 citrate-proton sympor 99.4 2.8E-11 6.2E-16 91.8 15.5 130 33-162 257-396 (434)
111 KOG4686|consensus 99.4 8.9E-12 1.9E-16 88.0 11.5 152 10-162 261-416 (459)
112 COG2271 UhpC Sugar phosphate p 99.4 1.1E-12 2.3E-17 96.8 7.1 143 15-158 27-179 (448)
113 TIGR00901 2A0125 AmpG-related 99.4 4.3E-11 9.4E-16 88.3 15.8 130 15-146 211-355 (356)
114 TIGR00880 2_A_01_02 Multidrug 99.4 1.8E-12 3.8E-17 82.8 7.4 104 57-160 5-113 (141)
115 PRK05122 major facilitator sup 99.4 7.2E-11 1.6E-15 88.4 16.9 125 33-160 235-364 (399)
116 PRK10406 alpha-ketoglutarate t 99.4 6.5E-11 1.4E-15 89.8 16.7 125 33-157 262-396 (432)
117 TIGR01301 GPH_sucrose GPH fami 99.4 7.4E-11 1.6E-15 90.1 16.3 143 13-157 4-175 (477)
118 TIGR00892 2A0113 monocarboxyla 99.4 3.9E-11 8.6E-16 91.6 15.0 146 13-160 241-395 (455)
119 TIGR00881 2A0104 phosphoglycer 99.4 6.2E-11 1.3E-15 87.5 15.6 148 13-161 216-373 (379)
120 PRK11902 ampG muropeptide tran 99.4 8.2E-11 1.8E-15 88.4 16.1 135 21-159 7-155 (402)
121 TIGR00792 gph sugar (Glycoside 99.4 5.3E-11 1.1E-15 90.1 14.9 148 11-160 220-380 (437)
122 PRK11273 glpT sn-glycerol-3-ph 99.4 1.2E-10 2.5E-15 88.9 16.7 148 12-160 252-410 (452)
123 PF05977 MFS_3: Transmembrane 99.4 9.3E-11 2E-15 90.7 16.1 148 12-160 217-369 (524)
124 KOG0255|consensus 99.4 9.7E-12 2.1E-16 96.3 10.8 113 47-159 115-231 (521)
125 PRK12307 putative sialic acid 99.4 9.1E-11 2E-15 88.6 15.8 127 33-160 250-383 (426)
126 PRK09528 lacY galactoside perm 99.4 1.6E-11 3.5E-16 92.7 11.7 125 36-160 245-378 (420)
127 PRK11663 regulatory protein Uh 99.3 2E-10 4.2E-15 87.2 17.4 146 14-160 244-399 (434)
128 PRK11010 ampG muropeptide tran 99.3 9.2E-11 2E-15 90.4 15.7 148 8-159 7-168 (491)
129 TIGR00805 oat sodium-independe 99.3 1.9E-12 4.1E-17 102.3 6.1 127 33-160 52-234 (633)
130 COG0738 FucP Fucose permease [ 99.3 1.8E-10 3.9E-15 84.7 15.7 143 16-160 16-166 (422)
131 KOG2532|consensus 99.3 1.6E-11 3.5E-16 93.5 10.6 111 50-160 73-190 (466)
132 TIGR02332 HpaX 4-hydroxyphenyl 99.3 1.6E-10 3.4E-15 87.2 15.6 145 16-161 245-396 (412)
133 PF03825 Nuc_H_symport: Nucleo 99.3 2.6E-10 5.6E-15 85.7 16.6 150 11-161 205-365 (400)
134 PTZ00207 hypothetical protein; 99.3 3.3E-10 7.2E-15 88.4 17.6 121 34-157 47-179 (591)
135 TIGR02718 sider_RhtX_FptX side 99.3 3.2E-10 6.9E-15 84.8 16.6 147 13-161 208-367 (390)
136 PF07690 MFS_1: Major Facilita 99.3 6.8E-11 1.5E-15 86.6 12.6 131 20-151 213-352 (352)
137 KOG0254|consensus 99.3 1.3E-10 2.9E-15 90.0 14.5 97 51-147 90-189 (513)
138 TIGR00879 SP MFS transporter, 99.3 1E-10 2.2E-15 88.8 13.8 127 33-160 303-445 (481)
139 PRK11646 multidrug resistance 99.3 2.8E-10 6.2E-15 85.5 15.6 127 34-161 228-360 (400)
140 PRK15402 multidrug efflux syst 99.3 4.2E-10 9.1E-15 84.6 15.9 148 12-161 214-371 (406)
141 PF06609 TRI12: Fungal trichot 99.3 3.5E-10 7.5E-15 88.1 15.4 122 34-157 64-189 (599)
142 PRK08633 2-acyl-glycerophospho 99.3 2.3E-10 5E-15 95.9 15.1 145 13-158 232-382 (1146)
143 TIGR00901 2A0125 AmpG-related 99.3 2.6E-10 5.7E-15 84.2 13.8 125 33-160 7-145 (356)
144 TIGR00882 2A0105 oligosacchari 99.3 3.5E-10 7.7E-15 84.7 14.3 148 12-160 214-370 (396)
145 TIGR01272 gluP glucose/galacto 99.3 8.7E-10 1.9E-14 80.3 15.8 146 12-160 139-290 (310)
146 KOG2325|consensus 99.2 7.2E-11 1.6E-15 89.4 10.0 153 10-164 31-195 (488)
147 TIGR00712 glpT glycerol-3-phos 99.2 3.4E-10 7.3E-15 86.0 13.6 147 13-160 251-408 (438)
148 COG2270 Permeases of the major 99.2 2.4E-10 5.3E-15 84.5 12.2 155 10-165 249-408 (438)
149 PRK09848 glucuronide transport 99.2 8.3E-10 1.8E-14 84.1 15.6 149 11-160 226-388 (448)
150 TIGR00889 2A0110 nucleoside tr 99.2 4.2E-10 9.1E-15 85.1 13.8 137 16-157 5-153 (418)
151 TIGR00883 2A0106 metabolite-pr 99.2 3.4E-10 7.3E-15 84.0 12.9 98 60-157 45-155 (394)
152 PRK11010 ampG muropeptide tran 99.2 1.7E-09 3.7E-14 83.4 16.7 145 15-160 224-378 (491)
153 PF13347 MFS_2: MFS/sugar tran 99.2 3.2E-10 6.9E-15 85.9 12.0 149 10-160 222-384 (428)
154 PRK10091 MFS transport protein 99.2 2.9E-09 6.4E-14 79.5 16.8 125 34-160 219-350 (382)
155 TIGR00903 2A0129 major facilit 99.2 1.1E-09 2.4E-14 81.5 14.4 142 11-158 190-340 (368)
156 KOG0569|consensus 99.2 3.2E-09 7E-14 80.9 16.3 96 52-147 62-163 (485)
157 TIGR00898 2A0119 cation transp 99.2 1.9E-09 4.2E-14 83.2 15.5 99 57-155 362-467 (505)
158 PRK10133 L-fucose transporter; 99.2 2.2E-09 4.8E-14 81.7 15.4 147 12-160 257-407 (438)
159 PRK10054 putative transporter; 99.2 9.9E-10 2.2E-14 82.5 13.3 151 11-162 204-361 (395)
160 TIGR00710 efflux_Bcr_CflA drug 99.2 3.3E-09 7.1E-14 78.8 15.9 120 34-154 226-356 (385)
161 PRK06814 acylglycerophosphoeth 99.2 6.6E-10 1.4E-14 93.3 12.9 146 12-158 224-394 (1140)
162 PRK10213 nepI ribonucleoside t 99.2 6.3E-09 1.4E-13 78.2 17.0 147 11-160 214-366 (394)
163 PRK09669 putative symporter Ya 99.2 3.5E-09 7.7E-14 80.6 15.3 149 11-161 227-389 (444)
164 COG2223 NarK Nitrate/nitrite t 99.1 1.3E-09 2.9E-14 80.5 12.0 149 10-160 215-375 (417)
165 PRK11195 lysophospholipid tran 99.1 6.3E-09 1.4E-13 78.1 15.8 124 34-158 225-354 (393)
166 TIGR00885 fucP L-fucose:H+ sym 99.1 5.5E-09 1.2E-13 78.9 15.5 149 11-160 230-381 (410)
167 PF01306 LacY_symp: LacY proto 99.1 6.1E-10 1.3E-14 83.2 9.9 150 10-162 4-166 (412)
168 PRK10429 melibiose:sodium symp 99.1 3.6E-09 7.8E-14 81.3 14.5 148 11-160 229-393 (473)
169 COG2271 UhpC Sugar phosphate p 99.1 4.3E-09 9.3E-14 78.0 14.0 147 11-158 250-407 (448)
170 TIGR00886 2A0108 nitrite extru 99.1 3E-09 6.5E-14 78.6 12.5 133 13-147 225-364 (366)
171 PRK11102 bicyclomycin/multidru 99.1 1.2E-08 2.6E-13 75.9 15.7 110 34-144 214-330 (377)
172 COG3104 PTR2 Dipeptide/tripept 99.1 7E-10 1.5E-14 83.7 8.7 150 10-160 18-181 (498)
173 PLN00028 nitrate transmembrane 99.1 5.3E-09 1.2E-13 80.4 13.6 124 33-159 271-404 (476)
174 PRK15034 nitrate/nitrite trans 99.1 1.5E-08 3.2E-13 77.3 15.4 147 11-160 250-428 (462)
175 PRK10077 xylE D-xylose transpo 99.1 9.4E-09 2E-13 78.8 14.7 120 35-155 292-421 (479)
176 TIGR00792 gph sugar (Glycoside 99.1 6.1E-09 1.3E-13 78.9 13.1 125 33-157 18-159 (437)
177 COG2807 CynX Cyanate permease 99.0 3.2E-08 6.8E-13 72.3 15.5 153 10-164 205-363 (395)
178 TIGR00887 2A0109 phosphate:H+ 99.0 4.2E-09 9.1E-14 81.4 11.1 103 58-160 343-454 (502)
179 KOG2504|consensus 99.0 3E-08 6.5E-13 76.7 15.1 148 12-161 297-451 (509)
180 TIGR00894 2A0114euk Na(+)-depe 99.0 2.3E-08 5E-13 76.5 14.3 146 12-159 260-421 (465)
181 PRK11902 ampG muropeptide tran 99.0 7.2E-08 1.6E-12 72.5 16.6 143 13-160 209-365 (402)
182 PRK11043 putative transporter; 99.0 7.4E-08 1.6E-12 72.3 16.5 124 34-159 223-356 (401)
183 KOG2816|consensus 99.0 1.4E-08 3.1E-13 77.4 11.8 151 10-160 15-174 (463)
184 PRK10473 multidrug efflux syst 99.0 7.5E-08 1.6E-12 72.1 15.5 65 34-98 223-287 (392)
185 PF03825 Nuc_H_symport: Nucleo 99.0 4.2E-08 9.2E-13 73.8 13.9 113 16-130 5-121 (400)
186 PF05631 DUF791: Protein of un 99.0 2E-07 4.3E-12 68.2 16.7 119 22-142 43-168 (354)
187 PRK10429 melibiose:sodium symp 98.9 5.8E-08 1.3E-12 74.7 14.6 123 24-147 17-154 (473)
188 PRK09669 putative symporter Ya 98.9 5.8E-08 1.2E-12 74.0 14.1 115 33-147 28-157 (444)
189 KOG2533|consensus 98.9 3E-08 6.4E-13 76.3 12.3 114 46-159 77-195 (495)
190 PF00083 Sugar_tr: Sugar (and 98.9 2.4E-11 5.2E-16 92.4 -4.5 105 50-154 46-158 (451)
191 PRK11462 putative transporter; 98.9 2.1E-07 4.5E-12 71.4 16.8 148 11-160 226-387 (460)
192 PF12832 MFS_1_like: MFS_1 lik 98.9 2.4E-08 5.2E-13 57.6 8.8 68 18-87 5-72 (77)
193 PRK11652 emrD multidrug resist 98.9 1.6E-07 3.4E-12 70.4 15.5 124 34-158 227-358 (394)
194 TIGR02718 sider_RhtX_FptX side 98.9 2.9E-07 6.3E-12 68.9 16.5 142 16-159 4-158 (390)
195 KOG3762|consensus 98.8 1.2E-08 2.7E-13 77.7 6.7 137 22-160 380-522 (618)
196 KOG0569|consensus 98.8 2.2E-07 4.9E-12 71.0 13.3 112 34-146 290-414 (485)
197 KOG0252|consensus 98.8 1.9E-08 4.1E-13 75.5 7.0 101 47-147 81-191 (538)
198 PF01306 LacY_symp: LacY proto 98.7 3.5E-06 7.6E-11 63.4 17.1 149 11-160 218-375 (412)
199 COG0477 ProP Permeases of the 98.7 2.8E-06 6.2E-11 60.2 16.2 128 33-160 21-158 (338)
200 COG2211 MelB Na+/melibiose sym 98.7 8.6E-07 1.9E-11 67.4 13.4 149 11-160 234-396 (467)
201 KOG0253|consensus 98.7 1.8E-07 3.9E-12 68.8 9.4 97 58-154 389-490 (528)
202 TIGR00924 yjdL_sub1_fam amino 98.7 8.6E-07 1.9E-11 68.3 13.5 138 18-156 277-439 (475)
203 PRK11462 putative transporter; 98.6 2.9E-06 6.3E-11 65.2 15.2 132 25-157 21-169 (460)
204 COG0738 FucP Fucose permease [ 98.6 1.7E-06 3.7E-11 64.2 13.0 149 11-162 234-386 (422)
205 PRK09848 glucuronide transport 98.6 2.7E-06 5.8E-11 65.0 14.1 119 23-142 18-152 (448)
206 KOG2532|consensus 98.6 1.9E-06 4.1E-11 66.1 12.2 147 11-159 256-418 (466)
207 TIGR00788 fbt folate/biopterin 98.6 1.5E-07 3.3E-12 72.3 6.3 117 45-161 283-414 (468)
208 KOG2504|consensus 98.6 6.8E-07 1.5E-11 69.3 9.6 121 36-158 68-194 (509)
209 TIGR00788 fbt folate/biopterin 98.5 2.8E-06 6E-11 65.4 12.6 137 19-160 32-184 (468)
210 PF13347 MFS_2: MFS/sugar tran 98.5 5.5E-07 1.2E-11 68.4 8.6 125 34-158 21-164 (428)
211 PF05978 UNC-93: Ion channel r 98.5 2.7E-05 5.9E-10 51.0 14.9 103 57-159 44-150 (156)
212 PF06813 Nodulin-like: Nodulin 98.5 3E-06 6.5E-11 59.7 11.0 112 34-147 21-142 (250)
213 PF03209 PUCC: PUCC protein; 98.5 1.1E-05 2.4E-10 60.1 14.2 147 13-160 208-363 (403)
214 PRK15403 multidrug efflux syst 98.4 4E-05 8.7E-10 58.1 16.5 148 11-160 216-373 (413)
215 COG2807 CynX Cyanate permease 98.4 2.6E-05 5.7E-10 57.4 14.6 127 33-161 31-161 (395)
216 PRK09584 tppB putative tripept 98.4 1.6E-05 3.5E-10 61.8 14.4 104 53-158 319-438 (500)
217 KOG2615|consensus 98.4 1.2E-05 2.7E-10 59.5 11.2 118 46-163 293-417 (451)
218 COG2211 MelB Na+/melibiose sym 98.3 3.7E-05 8.1E-10 58.7 13.8 126 21-147 20-160 (467)
219 KOG0254|consensus 98.3 7.7E-06 1.7E-10 63.7 10.5 125 20-147 302-442 (513)
220 PRK10207 dipeptide/tripeptide 98.3 2.1E-05 4.5E-10 61.0 12.1 103 53-155 312-436 (489)
221 PF11700 ATG22: Vacuole efflux 98.3 9.6E-05 2.1E-09 57.1 14.9 85 50-134 70-160 (477)
222 KOG0637|consensus 98.2 5.8E-06 1.3E-10 62.3 7.4 139 15-155 34-200 (498)
223 TIGR01301 GPH_sucrose GPH fami 98.1 0.00035 7.7E-09 54.0 15.6 147 13-160 258-444 (477)
224 PRK15462 dipeptide/tripeptide 98.1 0.00017 3.8E-09 55.9 13.5 106 53-159 311-435 (493)
225 KOG3764|consensus 98.1 9E-06 2E-10 60.5 5.2 135 25-160 282-429 (464)
226 PF03209 PUCC: PUCC protein; 98.0 0.00011 2.5E-09 54.9 10.2 112 47-159 12-150 (403)
227 KOG0253|consensus 97.9 0.00012 2.6E-09 54.4 9.1 108 34-141 97-206 (528)
228 PF06609 TRI12: Fungal trichot 97.9 0.00071 1.5E-08 53.6 13.6 145 13-158 310-465 (599)
229 KOG2533|consensus 97.9 0.00031 6.8E-09 54.5 11.2 127 11-138 271-405 (495)
230 KOG2563|consensus 97.9 0.00027 5.8E-09 53.6 10.0 145 13-158 41-200 (480)
231 PF06779 DUF1228: Protein of u 97.8 0.00034 7.3E-09 40.9 8.1 66 33-99 11-76 (85)
232 KOG2816|consensus 97.7 0.0002 4.3E-09 55.1 8.1 123 38-160 265-392 (463)
233 TIGR00926 2A1704 Peptide:H+ sy 97.7 0.00079 1.7E-08 54.1 11.4 125 34-158 7-148 (654)
234 PF01770 Folate_carrier: Reduc 97.7 0.0047 1E-07 46.8 14.4 126 33-158 22-153 (412)
235 TIGR00769 AAA ADP/ATP carrier 97.6 0.011 2.3E-07 45.9 15.6 109 50-158 43-189 (472)
236 PF00083 Sugar_tr: Sugar (and 97.6 1.1E-07 2.4E-12 72.4 -11.4 122 34-158 273-409 (451)
237 TIGR00805 oat sodium-independe 97.6 0.00078 1.7E-08 54.0 9.6 81 12-93 329-412 (633)
238 KOG0255|consensus 97.6 0.011 2.4E-07 46.3 15.8 100 56-155 356-463 (521)
239 KOG3762|consensus 97.5 9E-05 2E-09 57.3 3.0 72 22-95 20-92 (618)
240 KOG1330|consensus 97.4 0.0015 3.3E-08 49.8 8.9 121 40-160 273-412 (493)
241 PF06963 FPN1: Ferroportin1 (F 97.4 0.017 3.7E-07 44.2 14.1 113 34-147 278-403 (432)
242 KOG4686|consensus 97.3 1.6E-05 3.5E-10 57.0 -2.3 97 51-147 80-183 (459)
243 COG2270 Permeases of the major 97.3 0.0022 4.8E-08 48.4 8.6 100 48-147 56-162 (438)
244 PF03092 BT1: BT1 family; Int 97.3 0.011 2.3E-07 45.5 12.5 126 34-161 10-151 (433)
245 PTZ00207 hypothetical protein; 97.1 0.0041 8.8E-08 49.5 8.8 148 12-161 352-515 (591)
246 PF02487 CLN3: CLN3 protein; 96.8 0.14 3.1E-06 38.9 14.8 100 46-147 277-382 (402)
247 KOG0252|consensus 96.7 0.0026 5.7E-08 48.7 4.3 87 61-147 359-453 (538)
248 COG3104 PTR2 Dipeptide/tripept 96.7 0.052 1.1E-06 42.1 11.2 95 53-147 327-441 (498)
249 PF06963 FPN1: Ferroportin1 (F 96.7 0.2 4.4E-06 38.6 15.8 73 13-86 2-74 (432)
250 KOG3098|consensus 96.6 0.016 3.4E-07 44.7 7.8 92 56-147 56-149 (461)
251 PF03137 OATP: Organic Anion T 96.5 0.00048 1E-08 54.1 -0.6 136 22-159 12-202 (539)
252 TIGR01272 gluP glucose/galacto 96.4 0.011 2.5E-07 43.2 6.0 61 100-160 9-72 (310)
253 KOG3098|consensus 96.4 0.31 6.8E-06 37.8 13.5 134 12-147 239-399 (461)
254 PRK03612 spermidine synthase; 96.3 0.39 8.5E-06 38.0 17.0 42 36-77 36-77 (521)
255 PF03137 OATP: Organic Anion T 96.2 0.0012 2.7E-08 51.9 0.0 149 11-160 303-514 (539)
256 KOG2563|consensus 96.1 0.009 2E-07 45.6 4.3 98 50-147 301-406 (480)
257 TIGR00939 2a57 Equilibrative N 94.9 1.4 2.9E-05 34.2 12.3 103 51-154 308-428 (437)
258 KOG3626|consensus 93.3 0.76 1.7E-05 37.7 8.3 78 12-90 391-471 (735)
259 KOG3574|consensus 93.0 1.1 2.4E-05 34.3 8.2 131 12-147 30-180 (510)
260 PF03092 BT1: BT1 family; Int 92.9 0.7 1.5E-05 35.6 7.4 115 47-161 252-381 (433)
261 PF01770 Folate_carrier: Reduc 92.8 3.6 7.8E-05 31.7 12.9 96 52-147 287-387 (412)
262 KOG4332|consensus 92.5 0.089 1.9E-06 38.1 2.0 95 33-128 56-153 (454)
263 KOG2601|consensus 92.4 3.9 8.5E-05 31.3 11.5 75 11-86 25-99 (503)
264 TIGR00806 rfc RFC reduced fola 92.2 3.4 7.5E-05 32.6 10.2 92 53-144 301-397 (511)
265 PF03219 TLC: TLC ATP/ADP tran 90.6 7.3 0.00016 30.8 13.8 110 50-159 58-205 (491)
266 KOG3626|consensus 90.5 0.22 4.7E-06 40.8 2.4 135 23-159 107-298 (735)
267 KOG4332|consensus 90.0 4.1 8.8E-05 29.9 8.1 95 53-147 285-391 (454)
268 PF00854 PTR2: POT family; In 89.3 2.1 4.5E-05 32.1 6.8 78 81-158 2-96 (372)
269 KOG1479|consensus 87.8 2.6 5.7E-05 32.2 6.4 103 50-154 282-399 (406)
270 TIGR00880 2_A_01_02 Multidrug 87.2 5 0.00011 24.5 9.9 33 53-85 90-122 (141)
271 KOG4830|consensus 86.9 1.6 3.4E-05 31.7 4.4 59 23-83 27-94 (412)
272 KOG3810|consensus 85.7 14 0.0003 28.2 9.5 91 53-143 274-369 (433)
273 PF11947 DUF3464: Protein of u 83.5 4.5 9.8E-05 26.5 5.1 33 115-147 109-141 (153)
274 PF01733 Nucleoside_tran: Nucl 81.4 0.58 1.3E-05 34.3 0.5 98 55-153 187-303 (309)
275 KOG3097|consensus 78.9 22 0.00047 26.9 7.7 55 61-115 69-124 (390)
276 COG5336 Uncharacterized protei 71.4 14 0.00031 22.6 4.4 30 53-82 45-75 (116)
277 PF00854 PTR2: POT family; In 67.7 50 0.0011 24.8 8.0 81 16-97 34-119 (372)
278 PF05631 DUF791: Protein of un 63.6 32 0.00068 26.1 5.8 62 12-76 243-304 (354)
279 KOG2325|consensus 62.5 5.8 0.00013 31.3 1.9 42 119-160 407-450 (488)
280 PF07672 MFS_Mycoplasma: Mycop 57.0 73 0.0016 23.1 10.2 91 53-143 144-249 (267)
281 KOG3880|consensus 56.4 46 0.001 25.1 5.5 48 100-147 341-389 (409)
282 PF09605 Trep_Strep: Hypotheti 55.5 63 0.0014 21.9 7.5 35 57-91 35-69 (186)
283 KOG1237|consensus 54.6 1.2E+02 0.0026 24.8 9.1 59 37-96 61-120 (571)
284 KOG3810|consensus 54.5 11 0.00025 28.6 2.2 93 65-157 57-153 (433)
285 PF02487 CLN3: CLN3 protein; 50.9 1.2E+02 0.0025 23.6 7.7 64 53-116 62-127 (402)
286 KOG0637|consensus 50.8 73 0.0016 25.3 6.0 59 54-112 336-396 (498)
287 PF13000 Acatn: Acetyl-coenzym 50.3 18 0.00039 28.9 2.8 69 17-86 4-76 (544)
288 KOG1479|consensus 47.9 1.3E+02 0.0028 23.4 12.5 41 34-76 38-78 (406)
289 KOG3574|consensus 45.3 1.5E+02 0.0033 23.3 9.6 39 109-147 377-416 (510)
290 TIGR02185 Trep_Strep conserved 42.3 1.1E+02 0.0024 20.9 6.9 29 58-86 38-66 (189)
291 PF09527 ATPase_gene1: Putativ 38.5 61 0.0013 16.9 5.0 27 60-86 10-37 (55)
292 KOG3097|consensus 37.3 81 0.0018 24.0 4.3 39 50-88 310-348 (390)
293 PF11872 DUF3392: Protein of u 37.3 1E+02 0.0022 19.0 5.8 15 17-31 53-67 (106)
294 PF13493 DUF4118: Domain of un 36.1 35 0.00075 20.3 2.1 21 60-80 85-105 (105)
295 TIGR02230 ATPase_gene1 F0F1-AT 34.9 1.1E+02 0.0023 18.6 5.4 27 60-86 52-79 (100)
296 TIGR03802 Asp_Ala_antiprt aspa 34.3 2.6E+02 0.0056 22.9 7.6 102 51-154 451-559 (562)
297 PF05525 Branch_AA_trans: Bran 33.2 2.4E+02 0.0052 22.2 7.1 21 72-92 67-87 (427)
298 PRK15433 branched-chain amino 32.7 2.5E+02 0.0054 22.2 7.9 82 12-96 7-96 (439)
299 COG3202 ATP/ADP translocase [E 30.9 2.9E+02 0.0062 22.3 14.9 108 50-157 61-207 (509)
300 PF01810 LysE: LysE type trans 30.6 1.7E+02 0.0036 19.5 6.0 30 13-43 99-128 (191)
301 PF13000 Acatn: Acetyl-coenzym 29.5 3.1E+02 0.0068 22.3 13.7 39 109-147 413-452 (544)
302 PF02632 BioY: BioY family; I 29.3 1.4E+02 0.0029 19.5 4.0 24 57-80 60-83 (148)
303 PF02694 UPF0060: Uncharacteri 26.1 1.7E+02 0.0036 18.1 4.7 40 53-92 57-96 (107)
304 COG1268 BioY Uncharacterized c 26.0 2.2E+02 0.0048 19.5 6.7 22 58-79 90-111 (184)
305 TIGR00807 malonate_madL malona 25.7 1.2E+02 0.0027 19.0 3.1 15 64-78 102-116 (125)
306 PF13940 Ldr_toxin: Toxin Ldr, 25.5 89 0.0019 14.7 2.1 19 58-76 16-34 (35)
307 PRK02237 hypothetical protein; 25.4 1.7E+02 0.0038 18.0 4.9 41 52-92 58-98 (109)
308 COG1079 Uncharacterized ABC-ty 24.2 3.1E+02 0.0067 20.5 7.9 80 64-147 21-105 (304)
309 cd02435 CCC1 CCC1. CCC1: This 23.9 2.8E+02 0.006 19.8 9.2 22 18-41 156-177 (241)
310 PRK11469 hypothetical protein; 22.1 2.7E+02 0.0058 19.0 10.0 32 64-95 149-180 (188)
311 KOG1237|consensus 21.6 4.6E+02 0.01 21.5 6.7 58 100-157 457-517 (571)
312 PF04117 Mpv17_PMP22: Mpv17 / 21.3 1.6E+02 0.0034 16.0 3.0 31 117-147 30-60 (68)
313 PRK03356 L-carnitine/gamma-but 20.6 4.6E+02 0.01 21.2 6.4 7 53-59 52-58 (504)
314 PF13782 SpoVAB: Stage V sporu 20.4 2.3E+02 0.005 17.6 7.6 31 100-130 47-77 (110)
315 PF08080 zf-RNPHF: RNPHF zinc 20.3 34 0.00074 16.3 0.0 9 74-82 3-11 (36)
No 1
>PRK12382 putative transporter; Provisional
Probab=99.79 E-value=1.3e-17 Score=124.52 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=120.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH
Q psy16666 4 NSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL 83 (167)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 83 (167)
+++.+.+.++.++.+.+..++...+.+. ..|.+|.+.++..+.+..+.|++.+...++..++++++|+++||+|||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (392)
T PRK12382 6 QTETRSSANFSLFRIAFAVFLTYMTVGL-PLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA 84 (392)
T ss_pred cCcCCCcccccHHHHHHHHHHHHHHHHH-HhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH
Confidence 3445556667777777777777777656 689999887554445556779999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHh---h-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhc
Q psy16666 84 LITVFVTCLPIPL---M-------TLDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSS 150 (167)
Q Consensus 84 ~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~g 150 (167)
..+.+...++... . ..+.+.+++.++++|++.+ ..+...+++.|..|+|+|++++++.+...+. .+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g 164 (392)
T PRK12382 85 LQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG 164 (392)
T ss_pred HHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence 8886554443221 1 1266778889999998654 5567788999999999999999998887776 889
Q ss_pred cchhhHhhh
Q psy16666 151 PSLTPFYYY 159 (167)
Q Consensus 151 p~i~g~l~~ 159 (167)
|.+++.+.+
T Consensus 165 ~~~~~~l~~ 173 (392)
T PRK12382 165 APLGLLLHS 173 (392)
T ss_pred HHHHHHHHh
Confidence 999888764
No 2
>PRK10054 putative transporter; Provisional
Probab=99.77 E-value=8.3e-17 Score=120.51 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=118.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
+.+|+++.+.+..++...+.+. ..|++|.|+++..+.+..++|+..+...+...+.+++.|+++||+|||+++..+...
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~-~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGA-TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 4455677777777787777766 699999998766555556779999999999999999999999999999999888766
Q ss_pred HHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 90 TCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
..++...+.. +.+.+++.+.+.+.. +...+...++..|..|+++|+++.++.+...++ .+||.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~ 157 (395)
T PRK10054 83 FASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM 157 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554443 566666666666653 445677889999999999999999999998888 889999998764
No 3
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.76 E-value=4.8e-17 Score=121.66 Aligned_cols=151 Identities=13% Similarity=0.132 Sum_probs=119.4
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
..+.++++..+++..++..++.+. ..+.+|.+.++..+.+..+.+++.+...++..+++++.|+++||+|||+++..+.
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (399)
T PRK05122 10 GLRLTLRIVSIVMFTFISYLTIGL-PLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL 88 (399)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence 445667777788888888888766 7999999876554545567799999999999999999999999999999999986
Q ss_pred HHHHhhHHhhh----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 88 FVTCLPIPLMT----------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 88 ~~~~~~~~~~~----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
+...++..... .+.+.+++.+++.|++. ...+...+++.|..|+|+|+++.++....... .+||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~ 168 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLG 168 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHH
Confidence 65554322211 13456788889999865 45577888899999999999999998777766 7889998
Q ss_pred hHhhh
Q psy16666 155 PFYYY 159 (167)
Q Consensus 155 g~l~~ 159 (167)
+.+.+
T Consensus 169 ~~l~~ 173 (399)
T PRK05122 169 VLLYH 173 (399)
T ss_pred HHHHH
Confidence 88765
No 4
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.75 E-value=1.4e-16 Score=119.17 Aligned_cols=146 Identities=14% Similarity=0.103 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+|+++.+++..++..++... .....+...++.+.++ .+.+++.+.+.+...+..+++|+++||+|||+++..+..+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~ 79 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNA-LLFAAIALLKELHYPD-WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKL 79 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHH
Confidence 34566777777777776544 3444555666766655 456999999999999999999999999999999999977666
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++......... .++.++++|++. ...|...+++.|++|+|+|++++++.+...+. .+||.++|.+.+.
T Consensus 80 ~~~~~~~~~~~-~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 80 LGCLLMLFGIH-PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333111 256778899865 56789999999999999999999999988777 8999999988763
No 5
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.74 E-value=3.6e-16 Score=117.04 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=117.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHH----HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFL----MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI 85 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (167)
..++.+..+++..++...+... ..+++|.+.++.+.+..+ ..+++.+...+...++.++.|+++||+|||+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 89 (408)
T PRK09874 11 NWKRNLTVAWLGCFLTGAAFSL-VMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLR 89 (408)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHH
Confidence 3344556666666777777655 688999999887655322 34888899999999999999999999999999988
Q ss_pred HHHHHHhhHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 86 TVFVTCLPIPLMT--LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+.....++..... .+.+.+++.+++.|+.++..+...+++.|..|+++|+++.+..+....+ .++|.+++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 167 (408)
T PRK09874 90 SALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD 167 (408)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766666555443 3777888888888887666777888899999999999999999887777 788999888765
No 6
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.74 E-value=4.4e-16 Score=116.78 Aligned_cols=143 Identities=17% Similarity=0.291 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
+.++...++...+... ..|+++.++++..+.+..+.|++.+...+...+.+++.|+++||+|||+++..+.....+...
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFV-VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence 5566667777777655 699999887665555667789999999999999999999999999999999998777777665
Q ss_pred hhhH--HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 96 LMTL--DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 96 ~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.... +.+.+.+.+++.|+..+ ..+...+++.|..|+|+|+++.++.+...++ .+||.++|.+.+
T Consensus 92 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 92 TMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443 67778888889998654 5678889999999999999999999998888 999999998874
No 7
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.73 E-value=2.8e-16 Score=117.05 Aligned_cols=147 Identities=11% Similarity=0.004 Sum_probs=121.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
.+++++.++...++.....+. ..+.+|.+.++.+.++ .++|++.+...++..+++++.|+++||+|||+++..+....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~-~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~ 81 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAV-LNTLVPLWLAQEHLPT-WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIF 81 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777787777666 6899999999886654 57799999999999999999999999999999999987777
Q ss_pred HhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 91 CLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.++..... .+.+.+++.+++.|++. ...+...+.+.|..++++|+++++..+...++ .+||.+++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 82 AAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 76655443 37888888999999865 45677777888889999999999999888887 888888887654
No 8
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.73 E-value=8.4e-16 Score=115.07 Aligned_cols=127 Identities=8% Similarity=0.108 Sum_probs=107.9
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..+.+|.+.++++.++. +.++..+...++..+++++.|+++||+|||+++..+..+..++...... +++.+++.+++
T Consensus 39 ~~~~l~~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 117 (394)
T PRK10213 39 PVSLLTPMAQDLGISEG-VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRAC 117 (394)
T ss_pred HHhhHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 45678888888776664 5599999999999999999999999999999999997777766555443 78899999999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|+.. ...+...+++.|++|+|+|+++.++.....++ .+||.+++.+.+.
T Consensus 118 ~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~ 170 (394)
T PRK10213 118 LGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL 170 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99864 56788999999999999999999999998888 8999999988653
No 9
>PRK03545 putative arabinose transporter; Provisional
Probab=99.73 E-value=5.2e-16 Score=115.88 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
..+.+|.+.++++.+.. +.++..+.+.++..+++++.|+++||+|||+++..+.....++..... .+.+.+++.+++
T Consensus 28 ~~~~~~~l~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTA-QVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHcchHHHHhHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45567888888776664 669999999999999999999999999999999999777766655544 488888999999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|+.. ...+...+++.|.+|+|+|++++++.....++ .+||.+++.+.+.
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~ 159 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99865 45678899999999999999999999888887 8899998877643
No 10
>KOG2615|consensus
Probab=99.72 E-value=3.8e-17 Score=118.32 Aligned_cols=112 Identities=29% Similarity=0.406 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16666 48 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFAVTFSVVFAYV 125 (167)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 125 (167)
.....|++-+.+++.+++.++.+|.++||+|||+++..|++..+++...++. ++..++.+|++.|++.+......+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 4456699999999999999999999999999999999999988888777765 56566667999999999999999999
Q ss_pred hccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 126 ADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 126 ~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+|+.++++|+.+++..+..+++ ++||.+||++.+
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999999 999999999987
No 11
>PRK10504 putative transporter; Provisional
Probab=99.71 E-value=1.2e-15 Score=116.55 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=117.3
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.++.+....++....... ..+.+|.+.++.+.+.. +.+++.+.+.++..++.+++|+++||+|||+++..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTI-VNTALPSMAQSLGESPL-HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 44556666666666666544 68889999988766654 55888899999999999999999999999999888766665
Q ss_pred hhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++..... .+.+.+++.++++|++. ...+...+++.|.+|+++|+++.++.+...++ .+||.++|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~ 160 (471)
T PRK10504 87 LGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY 160 (471)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 5444433 36778888899999865 56678899999999999999999999988777 8999999988753
No 12
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.4e-15 Score=110.82 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=125.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
.....++.+.+..|...... ++..+.+|...+|++.+.. ..|...+.+.++..++.|+...+.||+.||++++....+
T Consensus 10 ~~~~~l~aLa~~~F~igttE-fv~~gLLp~iA~dl~vs~~-~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l 87 (394)
T COG2814 10 PMWLALLALALAAFAIGTTE-FVPVGLLPPIAADLGVSEG-AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL 87 (394)
T ss_pred cchHHHHHHHHHHHHHHhHH-HHHHhchHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 33444555555555555554 4478899999999998886 559999999999999999999999999999999999888
Q ss_pred HHhhHHhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 90 TCLPIPLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
..++....+ .|++.++++|++.|+. +.+++...+...|+.||++|++++++......+ .+|.++|.++-+.
T Consensus 88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~ 163 (394)
T COG2814 88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL 163 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 888776654 4999999999999984 678889999999999999999999999999888 9999999888654
No 13
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.71 E-value=1.6e-15 Score=113.16 Aligned_cols=143 Identities=16% Similarity=0.160 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
....+..+...+.... ..+..|.+.++.+.++. +.+++.+...++..++.++.|+++||+|||+++..+.++.+++..
T Consensus 15 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~-~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~ 92 (405)
T TIGR00891 15 SAAWLGWLLDAFDFFL-VALVLAEVAGEFGLTTV-DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTL 92 (405)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCChh-hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3334444444544433 56777877777766654 669999999999999999999999999999999988776666555
Q ss_pred hhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 96 LMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 96 ~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
... .+++.+++.+++.|++ +...+...+++.|++|+++|+++.++.+....+ .++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 93 ACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 3788888899999986 456788899999999999999999999988777 8888888877654
No 14
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.71 E-value=9.7e-16 Score=112.67 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL- 96 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~- 96 (167)
++...++..++.+. ..+.+|.|..+.+.++ .+.+++.+...++..+++++.|+++||+|||+++..+..+..+....
T Consensus 4 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAI-TQVALPLYVLAGTGSA-SVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 44556666666655 6788899988876665 46699999999999999999999999999999998886655443333
Q ss_pred -hhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 97 -MTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 97 -~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+.. +.+.+++.+++.|+.. ...+...+++.|+.|+++|+++.++.+....+ .+||.+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223 6778888899999865 46678899999999999999999999998888 8999999888653
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.70 E-value=1.6e-15 Score=112.61 Aligned_cols=137 Identities=16% Similarity=0.160 Sum_probs=111.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--H
Q psy16666 22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--L 99 (167)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~ 99 (167)
.++...+... ..|.+|.+.++.+.++. +.+++.+...++..+++++.|+++||+|||+.+..+..+..++..... .
T Consensus 14 ~~~~~~~~~~-~~~~~p~~~~~~g~s~~-~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~ 91 (385)
T TIGR00710 14 SILGPLGIDM-YLPAFPEIAADLSTPAS-IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN 91 (385)
T ss_pred HHHHHHHHHH-hcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444 57888888888776664 669999999999999999999999999999999988776666555544 3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 100 DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+.+.+.+.+++.|++. ...+...+++.|.+|+++|+++.+..+....+ .+||.+++.+.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999854 56678899999999999999999999988887 8899999877653
No 16
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.70 E-value=1.2e-15 Score=114.45 Aligned_cols=155 Identities=12% Similarity=0.065 Sum_probs=119.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH
Q psy16666 3 KNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF 82 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 82 (167)
-++.++-..++++....+..++...+.+. ..++++.+.++.+.++ .+.+++.+.+.++..++.++.|+++||+|||++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~ 80 (402)
T TIGR00897 3 INNLQKIGIPLNLLWGYIGVVVFMTGDGL-EQGWLSPFLKALGLSP-QQSASAFTLYGIAAAISAWISGVVAEIIGPLKT 80 (402)
T ss_pred cccHHHcCCCchhhHHHHHHHHHHHhhhh-HHHhHHHHHHHhCCCH-HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 34444445566777777888888777665 6778888888876655 567999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHhh---h---HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccc
Q psy16666 83 LLITVFVTCLPIPLM---T---LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPS 152 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~ 152 (167)
+..+..+..++...+ . .+.+.+++.+++.|++. ...+...+.+.|..|+|+|+++.|+.+...++ .+||.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~ 160 (402)
T TIGR00897 81 MMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSY 160 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988876666544322 1 25666777888888754 45566778889999999999999999988776 36888
Q ss_pred hhhHhhh
Q psy16666 153 LTPFYYY 159 (167)
Q Consensus 153 i~g~l~~ 159 (167)
+++.+.+
T Consensus 161 ~~~~l~~ 167 (402)
T TIGR00897 161 YSSYAIP 167 (402)
T ss_pred HHHhccc
Confidence 8877653
No 17
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.69 E-value=2.1e-15 Score=113.63 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 94 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 94 (167)
+....+..+...+.... ..+.+|.+.++.+.++. +.+++.+...++..+++++.|+++||+|||+++..+.....++.
T Consensus 20 ~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~~-~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~ 97 (426)
T PRK12307 20 LFSAWLGYVFDGFDFML-IFYIMYLIKADLGLTDM-EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGT 97 (426)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 33333334444444323 46667777777766654 56999999999999999999999999999999999977777765
Q ss_pred Hhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 95 PLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 95 ~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.... .+.+.+.+.+++.|++ +...+....++.|.+|+|+|+++.++.+....+ .++|.+.+.+.
T Consensus 98 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 98 GLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 5543 3788889999999986 457788899999999999999999998887777 66666655443
No 18
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.69 E-value=2.3e-15 Score=113.30 Aligned_cols=126 Identities=8% Similarity=-0.029 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
.....|...++++.+. .+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++...... +.+.+++.|++
T Consensus 27 ~~~~~~~l~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 105 (412)
T TIGR02332 27 IGFAGLTMGKDLGLSA-TMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRIL 105 (412)
T ss_pred HHHHHHhhHhhcCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4555565556665554 56799999999999999999999999999999998887777766555443 78888999999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.|++. ...+....++.|++|+++|+++.++++....+ .++|.+++++.+
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99865 56678888999999999999999999988877 888888887764
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.68 E-value=4.4e-15 Score=111.30 Aligned_cols=125 Identities=16% Similarity=0.060 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
.....|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+++..+..+..+...... .+.+.+++.+++
T Consensus 34 ~~~~~~~~~~~~~~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (406)
T PRK11551 34 AGVAAPRMAQEFGLDV-AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112 (406)
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4556677777766555 5679999999999999999999999999999999988766655544433 377888888999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.|+.. ...+...+++.|.+|+++|++++++.+....+ .++|.+++.+.
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99864 56678899999999999999999999887776 67777765543
No 20
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.68 E-value=4.8e-15 Score=110.49 Aligned_cols=145 Identities=15% Similarity=0.075 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
+.++.+....+........ ..+.+|.+.++++.+.. +.++..+...++..++++++|+++||+|||+++..+..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFG-IMGVLTELAHDVGISIP-AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHH-HHhChHHHHHHcCCCHH-HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 4555566666666666444 68888999888776664 569999999999999999999999999999999999777777
Q ss_pred hHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 93 PIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+...... +.+.+++.+++.|++. ...+.....+.|+.|+++|+++++.......+ .+||.+++++.+
T Consensus 81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 152 (382)
T PRK10091 81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ 152 (382)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence 6655443 7888899999999864 45667778899999999999999998887777 788999888764
No 21
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.68 E-value=3.7e-15 Score=110.08 Aligned_cols=144 Identities=13% Similarity=0.175 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 94 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 94 (167)
++..++..+........ ..+.+|.++++..+.+..+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFA-FSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHH-hHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 34445555555555433 68888864444444445567999999999999999999999999999999999877777665
Q ss_pred Hhhh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 95 PLMT--L-DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 95 ~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.... . +++.+++.+++.|+.++..+...+++.|++|+++|+++.++.....++ .+++.+++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 82 LWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5543 4 677788889999987666667788999999999999999998876666 666666665543
No 22
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.67 E-value=3.3e-15 Score=109.45 Aligned_cols=138 Identities=24% Similarity=0.326 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhHHHHHHH-HHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh-
Q psy16666 20 VVIFLEFFAWGLLTMPIIS-VLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM- 97 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~- 97 (167)
+..++....... ..+.+| .+.++.+.+. .+.+++.+...++..++.++.|+++||+|||+++..+.++.+++....
T Consensus 3 l~~~~~~~~~~~-~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 3 LAFFLSGFGFSI-ISPALPLYLAEELGLSP-SQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHH-HHHCCSTTTS-HCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence 445556666545 577888 4555555455 456999999999999999999999999999999998877776663332
Q ss_pred -hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 98 -TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 98 -~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+.+.+.+++.+++.|++. ...+...+++.|++|+|+|++++++.+...++ .++|.+++.+.+
T Consensus 81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 146 (352)
T PF07690_consen 81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS 146 (352)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence 246678888999999964 67789999999999999999999999998888 899999998863
No 23
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.67 E-value=6.2e-15 Score=112.74 Aligned_cols=141 Identities=14% Similarity=0.151 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 96 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (167)
.+++..++....... ..+.+|.+.++.+.+. .+.+++.+.+.++..++.++.|+++||+|||+++..+..+..++...
T Consensus 6 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 83 (485)
T TIGR00711 6 VLMLGTFMAVLDSTI-VNVAIPTIAGDLGSSL-SQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLL 83 (485)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCh-hhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 334444555555444 5778898888877665 45699999999999999999999999999999999987777666555
Q ss_pred hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.. .+.+.+++.++++|++. ...+...+++.|.+|+++|+++.++.+....+ .+||.+++++.+
T Consensus 84 ~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 84 CGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred HhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 44 37888889999999865 56678999999999999999999999888877 899999998765
No 24
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.67 E-value=7.8e-15 Score=112.87 Aligned_cols=142 Identities=16% Similarity=0.098 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 96 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (167)
.+++..++....... ....+|.+.++++.+.. +.+++.+.+.++...+.+++|+++||+|||+++..+..+..++...
T Consensus 10 ~~~~~~~~~~ld~ti-v~~a~p~i~~~l~~s~~-~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 10 IIVLVYIPVAIDATV-LHVAAPTLSMTLGASGN-ELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHh-HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333444444444434 57778999888776664 5599999999999999999999999999999999997777776555
Q ss_pred hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.. .+.+.++++++++|++. ...+.....+.+.+ |+++|++++++.....++ .+||.++|++.+.
T Consensus 88 ~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~ 157 (495)
T PRK14995 88 AAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH 157 (495)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44 37888999999999865 45566677676655 789999999999998888 9999999988754
No 25
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.66 E-value=4.2e-15 Score=113.78 Aligned_cols=150 Identities=17% Similarity=0.103 Sum_probs=120.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLIT 86 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~ 86 (167)
++.+.++.+....++..+++.. ..+++|.|+++. .+.+..+.+.+.+.+.+...++++++|+++|| +|||+++..+
T Consensus 7 ~~p~~~~~l~~~~~~~~~~~~~-~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 7 GHPKPLFTLFFVELWERFSYYG-MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred CCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 3445666666777777888755 699999998765 45555677999999999999999999999999 8999999999
Q ss_pred HHHHHhhHHhhhH--HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchh---hHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 87 VFVTCLPIPLMTL--DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHE---RSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
..+..++...+.. +.+.+.+.+.+.|++.+ ..+...++++|.+|+++ |+++.++.+...++ .+||.+++++.
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666554 45666777788888654 56788899999998754 88899999998888 89999999886
Q ss_pred hh
Q psy16666 159 YC 160 (167)
Q Consensus 159 ~~ 160 (167)
+.
T Consensus 166 ~~ 167 (475)
T TIGR00924 166 EN 167 (475)
T ss_pred Hh
Confidence 53
No 26
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.65 E-value=6.7e-15 Score=109.31 Aligned_cols=126 Identities=16% Similarity=0.081 Sum_probs=102.0
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-hh-HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MT-LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~ 110 (167)
..+.+|.+.++++.+.. +.|++.+.+.+++.+++++.|+++||+|||+++..+.......... .. .+.+.+++.|++
T Consensus 10 ~~~~lp~i~~~~~~s~~-~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l 88 (368)
T TIGR00903 10 FSPVLSLVAEDIDVSKE-ELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLL 88 (368)
T ss_pred HHhhHHHHHHHhCcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 57888999988877664 6699999999999999999999999999998876554444333222 22 378889999999
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.|++.+...+....++|++|+++|++++++.+....+ .++|.+++.+.+
T Consensus 89 ~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 89 AALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred HHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987666666677779999999999999999998888 888888888764
No 27
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.64 E-value=2.2e-14 Score=108.09 Aligned_cols=127 Identities=16% Similarity=0.095 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..|.+|...++++.+.. +.++..+.+.++..++++++|+++||+|||+++..+..+..++...... +.+.+++++++
T Consensus 35 ~~p~l~~i~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l 113 (413)
T PRK15403 35 IQPGIINVVRDFNADVS-LAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFI 113 (413)
T ss_pred hccCHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57777777777776654 5588999999999999999999999999999999887776666555443 78888999999
Q ss_pred HHHHHHH-HHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFAVT-FSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+|++.+. .+....++.|.+|+++|++++++.+....+ .+||.+++.+.+.
T Consensus 114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9986543 446678899999999999999999888877 8899999887643
No 28
>PRK03699 putative transporter; Provisional
Probab=99.64 E-value=1.9e-14 Score=107.75 Aligned_cols=147 Identities=13% Similarity=0.024 Sum_probs=109.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
|++-.+..++..++....... ..+.+|.+.++++.++. +.+++.+...++..++.++.|++.||+|||+++..+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~i~~~~~~s~~-~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIV-TGMVMGPIAEYFNLPVS-SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333344444444444333222 46677888877766554 6699999999999999999999999999999998887766
Q ss_pred HhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 91 CLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 91 ~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.++..... .+.+.+.+.+++.|++. ...+...+++.|.+|+++|+++.+..+..... .++|.+.+.+..
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 156 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA 156 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555444 37778888899999865 45567888999999999999999888776666 777887776653
No 29
>PRK10133 L-fucose transporter; Provisional
Probab=99.64 E-value=3.4e-14 Score=107.81 Aligned_cols=141 Identities=15% Similarity=0.090 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
..+.+..++..+.. ....+.+|.+.++++.++ .+.++..+.+.++..+++++.|++.||+|||+++..+..+..++..
T Consensus 29 ~~~~~~~~~~~~~~-~~~~~~~p~i~~~~~~s~-~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~ 106 (438)
T PRK10133 29 ALLCSLFFLWAVAN-NLNDILLPQFQQAFTLTN-FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 33333444444443 335778888877777655 5679999999999999999999999999999999999887777665
Q ss_pred hh-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 96 LM-----TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 96 ~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.+ ..+++.++++++++|++. ...+..+.++.|..|+++|....+..+..+.+ .+||.+++.+.
T Consensus 107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 237788889999999964 56678888888987777777788888888877 88888877554
No 30
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.64 E-value=2.8e-14 Score=106.59 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
...+...+....+... ..+.+|.+.++.+.++. +.++..+...++..++.++.|+++||+|||+.+..+.....++..
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~lp~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDM-YLVGLPRIAADLNASEA-QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 3344445555556545 57788988888776664 669999999999999999999999999999999988776666555
Q ss_pred hhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 96 LMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 96 ~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.... +.+.+++.+++.|+.. ...+...+++.|.+|+++|+++.+..+....+ .++|.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 84 LCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5443 6677788888888864 45678899999999999999999999887777 788888887653
No 31
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.64 E-value=2.9e-15 Score=112.84 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=117.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
++++.+..++...++..++.+. ..+.+|.+.++.+.++ .+.|++.+...++..+++++.|+++||+|||+++..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~-~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~ 91 (417)
T PRK10489 14 KTHPAFRAVFIARFISIFGLGL-LGVAVPVQIQMMTGST-LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGT 91 (417)
T ss_pred HhCCChhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHH
Confidence 3466677777777777777666 6888899988877655 5679999999999999999999999999999988777554
Q ss_pred HHhhHHhh-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 90 TCLPIPLM-------TLDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 90 ~~~~~~~~-------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.+++.... ..+.+.+.+.+++.|++.+ ..+...+++.|..|+++|+++.++.+...++ .+||.++|.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 92 CGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 44433221 1256777778888888654 5577889999999999999999998887777 899999998765
Q ss_pred h
Q psy16666 160 C 160 (167)
Q Consensus 160 ~ 160 (167)
.
T Consensus 172 ~ 172 (417)
T PRK10489 172 A 172 (417)
T ss_pred H
Confidence 3
No 32
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.64 E-value=9.7e-15 Score=106.59 Aligned_cols=141 Identities=23% Similarity=0.302 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM 97 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 97 (167)
.....+........ ..+..|.+.++.+.++ .+.++..+...++..++.++.|+++||+|||+.+..+.....+.....
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~ 81 (352)
T cd06174 4 LFLGFFLSGLDRGL-LSPALPLLAEDLGLSA-SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL 81 (352)
T ss_pred HHHHHHHHHHhhhh-hHhhHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 33444555555544 5788888888876555 466999999999999999999999999999999988877777665554
Q ss_pred hH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 98 TL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 98 ~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.. +.+.+.+.+++.|++. ...+...+++.|.+|+|+|++..++.+...++ .++|.+++.+.+.
T Consensus 82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 7788888899999854 56788999999999999999999999988888 8999999988764
No 33
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.64 E-value=3.4e-14 Score=113.16 Aligned_cols=125 Identities=17% Similarity=0.117 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
....+|.+.++.+.+. .+.+++.+...++.+++.+++|+++||+|||++++++.++..++..+.. .+.+.+++++++
T Consensus 186 is~ilp~i~~~~gls~-~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l 264 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPD-SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLL 264 (742)
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556677777776655 4569999999999999999999999999999999998766666544433 378888899999
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.|++ ++..+...+++.|.+|+++|++.+++.+....+ ++++.++..+.
T Consensus 265 ~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 265 SGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9985 467789999999999999999999998887777 66776665543
No 34
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.63 E-value=1.6e-14 Score=110.95 Aligned_cols=151 Identities=14% Similarity=0.030 Sum_probs=117.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHH
Q psy16666 9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITV 87 (167)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~ 87 (167)
.++.+.++.++...+...+++.. ..++++.|+++..+.+..+.+++.+.+........+++|+++|| +|||+++..+.
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~-~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYG-VQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 34566777777788888888766 68888888876555555666888888888888888999999999 99999999998
Q ss_pred HHHHhhHHhhhH--H-HHHHHHHHHHHHHHHH-HHHHHHHHHhccccch--hhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 88 FVTCLPIPLMTL--D-TWWFFAMISISGVFAV-TFSVVFAYVADVTEEH--ERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 88 ~~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
++..++...... + ...+++.+.+++++.+ ..+...+++.|.+|++ +|++++++++...++ .+||.++|++.+
T Consensus 89 ~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 89 IVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776655443 2 2334467788888654 5578889999999877 457789999999888 889999998875
Q ss_pred h
Q psy16666 160 C 160 (167)
Q Consensus 160 ~ 160 (167)
.
T Consensus 169 ~ 169 (489)
T PRK10207 169 K 169 (489)
T ss_pred h
Confidence 4
No 35
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.63 E-value=1.9e-14 Score=109.06 Aligned_cols=126 Identities=14% Similarity=0.095 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
....+|.+.++.+.+. .+.+++.+...++..+++++.|+++||+|||+++.++.++..++...... +.+.+.+.+++
T Consensus 42 ~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 120 (434)
T PRK11663 42 FNAAMPEMLADLGLSR-SDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVL 120 (434)
T ss_pred HHHhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667888888876665 46699999999999999999999999999999999887777776665543 67777778888
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.|+.. ...+...+++.|++|+++|++++++.+...++ .++|.+++++.+
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88754 45678889999999999999999999998888 888888888764
No 36
>TIGR00895 2A0115 benzoate transport.
Probab=99.63 E-value=1.7e-14 Score=107.16 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
..+..|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+.+..+..+..++..... .+.+.+.+.+++
T Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (398)
T TIGR00895 36 MGFAAPAISAEWGLDP-VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFL 114 (398)
T ss_pred HHhhHHHHhhccCCCH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 3556677777766554 5669999999999999999999999999999999888766666554443 367777888888
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|++ +...+...+++.|.+|+++|+++.++.+....+ .++|.+++.+.+.
T Consensus 115 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 167 (398)
T TIGR00895 115 AGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV 167 (398)
T ss_pred HhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence 8885 456788999999999999999999999888877 8888888877643
No 37
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.63 E-value=1.6e-14 Score=108.35 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=102.8
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
..|.+|.+.++++.+. .+.++..+...++..++.++.|+++||+|||+++..+.....+...... .+.+.+++.+++
T Consensus 32 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 110 (406)
T PRK15402 32 IQPGMLAVVEDFNAGA-EWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFL 110 (406)
T ss_pred HhcchHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5777888888877665 4668999999999999999999999999999999888766666554433 367778888899
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|+.. ...+...+.+.|.+|+++|.+..++......+ .+||.+++.+.+.
T Consensus 111 ~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 163 (406)
T PRK15402 111 QGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV 163 (406)
T ss_pred HHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99865 44567888999999999999999988776665 8899988877653
No 38
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.63 E-value=5.2e-14 Score=108.10 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 96 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (167)
.+.+..++..+.... ..+.+|.+.++++.+. .+.++..+...++..++.++.|+++||+|||+++..+.++..++...
T Consensus 24 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 101 (496)
T PRK03893 24 AAWLGYLLDGFDFVL-ITLVLTEVQGEFGLTT-VQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLA 101 (496)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 333344444444433 5677788777776555 46689999999999999999999999999999999887766665555
Q ss_pred hh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 97 MT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 97 ~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.. .+.+.+.+.+++.|+. ++..+...+++.|.+|+++|+++.+..+....+ .++|.+++.+.+
T Consensus 102 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 169 (496)
T PRK03893 102 CGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP 169 (496)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44 3778888899999985 456788899999999999999999999888777 788888876654
No 39
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.62 E-value=4.6e-14 Score=105.48 Aligned_cols=134 Identities=18% Similarity=0.113 Sum_probs=105.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HH
Q psy16666 24 LEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DT 101 (167)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~ 101 (167)
+..+.... ..|.+|.+.++.+.++. +.+++.+...++..++++++|+++||+|||+.+..+.....++...... +.
T Consensus 19 ~~~~~~~~-~~p~~~~i~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 96 (394)
T PRK11652 19 VGQMAQTI-YVPAIADMARDLNVREG-AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSL 96 (394)
T ss_pred HHHHHHHH-HhccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccH
Confidence 33434333 57778888888776664 5699999999999999999999999999999998887766665554433 67
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 102 WWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 102 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+.+++.+++.|++. ...+....+..|.+++++|+++.+..+....+ .++|.+++.+.+
T Consensus 97 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 97 TVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888899999864 44566778889999999999999988877776 789998888764
No 40
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.62 E-value=2.7e-14 Score=109.18 Aligned_cols=125 Identities=15% Similarity=0.090 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------
Q psy16666 33 TMPIISVLNRTF-------PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------ 99 (167)
Q Consensus 33 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------ 99 (167)
..+..|.+.+++ .+.+..+.+++.+...++..++++++|+++||+|||+++..+..+..++....+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~ 110 (479)
T PRK10077 31 ISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFT 110 (479)
T ss_pred ehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 344555554443 1334456699999999999999999999999999999999986666554433221
Q ss_pred --------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 100 --------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 100 --------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
..+.+++.|+++|++ ++..+...++++|++|+++|+++++..+..... .+++.+++.+
T Consensus 111 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 179 (479)
T PRK10077 111 SIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179 (479)
T ss_pred cccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235567899999986 467789999999999999999999998877666 5556555544
No 41
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.62 E-value=9e-14 Score=104.70 Aligned_cols=144 Identities=14% Similarity=0.027 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI 94 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 94 (167)
+..++...+...+..+. ..+.+|.+.++++.+. .+.|++.+...++..+++++.|++.||+|||+++..+..+.+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~-~~~l~~~~~~~~~~s~-~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDI-TNPMVPQFQQAFTLTA-FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 44555555666666545 5788999988777665 466999999999999999999999999999999999988777766
Q ss_pred HhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 95 PLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 95 ~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
..+.. +++.++..+++.|++. ...+..++++.+..|+++|++..++.+...++ .+||.+++.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55432 5777888889999864 56678889999999999999999999998888 8899998877643
No 42
>KOG1330|consensus
Probab=99.61 E-value=3e-15 Score=110.97 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL 96 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 96 (167)
.+++...+..+--.. +-..++...+.++..+. ..|++.+.+.+.+++++|++|+++||++||+++.+|..+..++.+.
T Consensus 37 il~~vnlmny~Dr~~-iagv~~~v~~~fni~~s-~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~ 114 (493)
T KOG1330|consen 37 ILCLVNLMNYADRYT-IAGVLKEVQTYFNISDS-ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA 114 (493)
T ss_pred HHHHHHHHHHhhhhh-hhhhhHHHHHhcCCCch-hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence 333334444433222 33344444455555555 4499999999999999999999999999999999998887776666
Q ss_pred hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666 97 MT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN 162 (167)
Q Consensus 97 ~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~ 162 (167)
-. ..+|.+.++|.+.|++. ...+..+++++|.+|+++|++++++++.+..+ .+|-+.++.+.....
T Consensus 115 ~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 115 SGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 44 47899999999999974 67789999999999999999999999999888 777777776665544
No 43
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.61 E-value=9.1e-14 Score=105.26 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H--------HHHHHHHHHHHHHH-HHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D--------TWWFFAMISISGVF-AVTFSVV 121 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~g~~-~~~~~~~ 121 (167)
+...+...++..++++++|+++||+|||+++..+.....++....+. + ...+++.|+++|++ ++..+..
T Consensus 66 ~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~ 145 (432)
T PRK10406 66 AGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTS 145 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhH
Confidence 34455556666699999999999999999999997777666555432 2 24578899999986 4678899
Q ss_pred HHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 122 FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 122 ~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
.+++.|++|+++|++..+..+..... .+++.+..
T Consensus 146 ~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 146 ATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred HHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887665555 44444433
No 44
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.60 E-value=8.2e-14 Score=105.53 Aligned_cols=133 Identities=14% Similarity=0.215 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
|.++...+..++.+..+ .+..+..+.+.+ +++.+. .+.+++.+...++..+..++.|++.||+|.|+++.++.++..
T Consensus 34 r~l~~s~~~f~~~F~~w-~~~~~l~~~~~~~~~~ls~-~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSCLLLAFCVW-MLFSAVTVNLNKIGFNFTT-DQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44454444444555554 335666666665 455554 566999999999999999999999999999999988877666
Q ss_pred hhHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 92 LPIPLMT-------LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 92 ~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
+...... .+++.+++.+++.|+.++.++.....+++++|+++|++++|+.....++
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~ 174 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNL 174 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence 6555443 3778899999999998778889999999999999999999998544433
No 45
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.60 E-value=1.1e-13 Score=106.07 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=95.3
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..+.+|.+.++++.+.. +.+++.+...++..+++++.|+++||+|||+++..+.+...+...+... +.+.+++.+++
T Consensus 55 ~~~~~~~l~~~~gls~~-~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l 133 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKS-DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFF 133 (476)
T ss_pred HHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56777888888776654 5688888899999999999999999999999988887666665554443 67777788888
Q ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 111 SGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
.|++.+.......+++|++|+++|+++.++.+...++ .+++.+.+.+
T Consensus 134 ~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i 182 (476)
T PLN00028 134 IGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV 182 (476)
T ss_pred HHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8986554455667889999999999999998765555 4554444433
No 46
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.60 E-value=1.3e-13 Score=106.24 Aligned_cols=151 Identities=15% Similarity=0.210 Sum_probs=121.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
...++|.+..++....+..++..+ ....++.+..+..+++ ...+++.+...+..++.++++|.++||++||++++.+-
T Consensus 5 aplr~~~Fr~lw~a~~iS~lG~~~-~~va~~wlv~~lt~S~-~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~ 82 (524)
T PF05977_consen 5 APLRNRNFRRLWIAQLISNLGDWM-QTVALAWLVTQLTGSP-LMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQ 82 (524)
T ss_pred ccccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 457888899999988888888755 5666677777766665 46699999999999999999999999999999999985
Q ss_pred HHHHhhHHh---hhH----HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 88 FVTCLPIPL---MTL----DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 88 ~~~~~~~~~---~~~----~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
+..++.... +.. +.|.+++..++.|++.. ..|..++.+.|+.|+++..+++++.+...++ .+||.++|.+
T Consensus 83 ~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L 162 (524)
T PF05977_consen 83 LLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL 162 (524)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 444332222 111 67778888888888664 5689999999999999999999999998888 9999999988
Q ss_pred hhh
Q psy16666 158 YYC 160 (167)
Q Consensus 158 ~~~ 160 (167)
...
T Consensus 163 va~ 165 (524)
T PF05977_consen 163 VAF 165 (524)
T ss_pred HHH
Confidence 653
No 47
>PRK15075 citrate-proton symporter; Provisional
Probab=99.60 E-value=6.8e-14 Score=106.02 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHH-----HHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIK-----GFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
..++..++....... .....|...++++.++.++..+..+.. .+...+++++.|+++||+|||+++..+..+..
T Consensus 19 ~~~~~~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~ 97 (434)
T PRK15075 19 RVTSGNFLEMFDFFL-FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMA 97 (434)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 333444455544433 577778888887665544433332222 23335788999999999999999999977776
Q ss_pred hhHHhhhH--HHH--------HHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 92 LPIPLMTL--DTW--------WFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 92 ~~~~~~~~--~~~--------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
++...... +.+ .+++.|+++|++. ...+....+++|++|+++|+++.++.+...+. .+++.+++.+.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~ 177 (434)
T PRK15075 98 SGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLN 177 (434)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555543 433 3577889999865 45677789999999999999999998887766 66777776653
No 48
>PRK11043 putative transporter; Provisional
Probab=99.60 E-value=1.5e-13 Score=102.98 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=106.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H
Q psy16666 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D 100 (167)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~ 100 (167)
.+..++... ..|.+|.+.++.+.++ .+.++..+...++..++++++|+++||+|||+++..+..+..++...... +
T Consensus 16 ~~~~~~~~~-~~p~~~~i~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 93 (401)
T PRK11043 16 MLGFLATDM-YLPAFKAIQADLQTSA-SAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES 93 (401)
T ss_pred HHHHHHHHH-HHhhHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444333 5777888787777665 46699999999999999999999999999999999887666665554433 6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 101 TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 101 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+.+++.+++.|++. ...+...+++.|.+|++++++..+..+....+ .++|.+++.+.+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~ 156 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH 156 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888889988754 44566788999999999999988888776666 7899999887653
No 49
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.59 E-value=5.5e-14 Score=104.32 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=106.5
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..|.+|.+.++.+.++ .+.+++.+...++..++.+++|+++||+|||+++..+..+..+....... +.+.+.+.+++
T Consensus 10 ~~p~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 88 (377)
T PRK11102 10 YLPALPVIAADFGVSA-GSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFL 88 (377)
T ss_pred HhccHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 5788999998876655 46699999999999999999999999999999999987777666555443 67778888899
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|++. ...+...+++.|.+|+|+|+++.++.+....+ .++|.+++.+.+.
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 141 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW 141 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99865 55678889999999999999999999888777 8889888877653
No 50
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.59 E-value=1.9e-13 Score=102.91 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=101.4
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH
Q psy16666 38 SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA 115 (167)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 115 (167)
|.+.++.+.+..+..|.+.+.+..++.+..++.|+++||+|.|+++..+.+...+...+... +.+.+.+.+++.|++.
T Consensus 50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE 129 (511)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM 129 (511)
T ss_pred HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556555542799999999999999999999999999999999998887776666554 7888999999999976
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 116 VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
+.......++.+++|+++|+++.++.+++..+ ++++++++++.
T Consensus 130 A~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 130 AARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54449999999999999999999999999888 88888888743
No 51
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.59 E-value=7.2e-14 Score=104.63 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=104.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..+.+|...++++.++. +.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++...... +++.+++.|++
T Consensus 28 ~~~~lp~i~~~~~~s~~-~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l 106 (393)
T PRK09705 28 VGPLLPQLRQASGMSFS-VAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALL 106 (393)
T ss_pred cchhHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 47788888888877665 5699999999999999999999999999999999998888887776554 78888999999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+|++. ...+....++.|.+| ++|+++++.+...... .+|+.+++.+.+
T Consensus 107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~ 157 (393)
T PRK09705 107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ 157 (393)
T ss_pred HHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99965 455677888899886 7799999998877666 777777776654
No 52
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.59 E-value=9.1e-14 Score=106.20 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=112.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-cchHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLLITVF 88 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (167)
++.+.++.++...+...+.+.. ...++|.|+++..+.+..+.+.+.+.+.....++.+++|+++||+ |||+++..+.+
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg-~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYG-MRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 3666777777777777777655 588899998776555666778888999999999999999999999 99999999877
Q ss_pred HHHhhHHhhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccch--hhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 89 VTCLPIPLMTL---DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEH--ERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 89 ~~~~~~~~~~~---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+..++...+.. +.....+...+..++.+ ..+...++++|.+|++ +|.++.++.+...++ .++|.+.|++.+
T Consensus 85 l~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 85 LMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776555443 11223333333333333 3466788999999875 699999999998888 899999998864
No 53
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.59 E-value=3e-14 Score=105.44 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
.....|.+.++.+.++ .+.+++.+...++..++.++.|+++||+|||+++..+.++..++...... +.+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 13 LSFAAPMLQEDLGLSA-AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred hhHhHHHHHHhhCCCh-hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3455566666666555 46699999999999999999999999999999998887766665555443 78888899999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.|++. ...+...+++.|.+|+|+|+++.++.+...++ .++|.+++.+.+
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 143 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 99864 56678999999999999999999999988888 888888887654
No 54
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.59 E-value=3.8e-15 Score=113.81 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=98.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-------HHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-------LDTWWFFA 106 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 106 (167)
....|.+.++++.++. +.|++.+.+.+++.+++++.|+++||+|||+++..+.+..++....++ .+.+.+++
T Consensus 49 ~~~~~~i~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (467)
T PRK09556 49 KAAQNDMISTYGLSTT-ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIA 127 (467)
T ss_pred hhhhHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 4567888888776665 569999999999999999999999999999998887665554433322 37788888
Q ss_pred HHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 107 MISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 107 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.|++.|++. ...+...++++|++|+++|++++|+.+...++ ++++.+..++.
T Consensus 128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~ 182 (467)
T PRK09556 128 LWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA 182 (467)
T ss_pred HHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence 999999864 45678889999999999999999998877766 55555554443
No 55
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.58 E-value=4.8e-13 Score=99.81 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=117.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|+++...+..++....... ...+.|.|.++.+. +..++|...+...+...+..+..+++.||+|+|+.+.++.+..
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~ 280 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAA-YYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIAC 280 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHH
Confidence 456666666666666666545 57788999988554 4457799999999999999999999999999999999888887
Q ss_pred HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHH-HHhh--hhccchhhHhhhhc
Q psy16666 91 CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSS-ETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 91 ~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~--~~gp~i~g~l~~~~ 161 (167)
.+....+.. +.+.++...++.|+ .+...+....++.+. |+++|++++++++. ..++ .+||.++|++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 281 VGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776666543 66777778899998 456777888899988 99999999999874 4455 88999999998764
No 56
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.57 E-value=4.2e-13 Score=98.66 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.++......++.............|.+.++..+.+..+.+.......++..++.+..+++.||++||+.+..+.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIG 288 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 44455555544444444333223677888877545555677999999999999999999999999999998887755555
Q ss_pred hhHHhhhH--H-HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL--D-TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+....... + .+...+..++.|++. ...+...+++.|..|+++|+++.++.+....+ .++|.++|.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 289 LAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444332 2 555666677778754 56678889999999999999999999998888 8999999998764
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.57 E-value=2.3e-13 Score=100.79 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH-HHHHHHhhHHhhh
Q psy16666 20 VVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI-TVFVTCLPIPLMT 98 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~-~~~~~~~~~~~~~ 98 (167)
+..++..++.+. ..|.+|.+.++..+.+..+.|++.+...+...+.+++.|+++||+|||+.++. +.....+......
T Consensus 4 ~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGAL-QFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 345666666666 68999998765555555677999999999999999999999999998887554 4444444333333
Q ss_pred --HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHH--HHHHHHHHhh--hhccchhhHhhhh
Q psy16666 99 --LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLA--YGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 99 --~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+++.+++.+++.+.. +...|...++..|..|+++|+++ .+......++ .+||.+++.+.+.
T Consensus 83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~ 151 (375)
T TIGR00899 83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG 151 (375)
T ss_pred hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence 3667677777777654 45667788888998887777654 4666666666 8899998888653
No 58
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.56 E-value=2.3e-13 Score=104.60 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCCch-H--HHHHH--HHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHT-F--LMNGL--IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
..+..++..+-... .....|...+++.... . ...+. ..+...++..+++++.|+++||+|||+++..+.++..+
T Consensus 21 ~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i 99 (490)
T PRK10642 21 ASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSI 99 (490)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444555544333 3444555555553221 1 11122 24677788999999999999999999999999888777
Q ss_pred hHHhhhH--HHH--------HHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 93 PIPLMTL--DTW--------WFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 93 ~~~~~~~--~~~--------~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
+....+. +++ .++++|+++|++ ++..+...++++|++|+++|++..++......+ .+|+.+.
T Consensus 100 ~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 100 STFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554 433 377889999985 567789999999999999999999887766555 4444443
No 59
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.56 E-value=2.2e-13 Score=113.83 Aligned_cols=152 Identities=15% Similarity=0.168 Sum_probs=111.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
..+++.+..+++..++..++.........+....++... +....+++.+++.++..++++++|+++||+|||++++.+.
T Consensus 5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~ 84 (1146)
T PRK08633 5 LLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK 84 (1146)
T ss_pred hhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence 455666666666666655554332233333333333322 3344588889999999999999999999999999998876
Q ss_pred HHHHhhHHhh-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 88 FVTCLPIPLM-----TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 88 ~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
++..+...+. ..+.+.+++.+++.|+.. ...+...+++.|++|+++|++++++.....++ ++||.+++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443332221 126778888999999865 45678899999999999999999999998888 899999998876
Q ss_pred h
Q psy16666 160 C 160 (167)
Q Consensus 160 ~ 160 (167)
.
T Consensus 165 ~ 165 (1146)
T PRK08633 165 S 165 (1146)
T ss_pred h
Confidence 4
No 60
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.55 E-value=5.2e-13 Score=103.00 Aligned_cols=112 Identities=11% Similarity=0.043 Sum_probs=91.6
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--H------HHHHHHHHHHHHHH-HHH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--D------TWWFFAMISISGVF-AVT 117 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~g~~-~~~ 117 (167)
.+..+.+++.+...++..++.+++|+++||+|||+++..+.++..++...... + .+.+++.|++.|++ ++.
T Consensus 53 ~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~ 132 (502)
T TIGR00887 53 LPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGD 132 (502)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhh
Confidence 34445588999999999999999999999999999998887666665444332 2 56788999999986 456
Q ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 118 FSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 118 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.+....+++|.+|+++|+++.++.+....+ .+++.++..+.
T Consensus 133 ~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 133 YPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999888777 77777776554
No 61
>KOG3764|consensus
Probab=99.55 E-value=5.2e-14 Score=102.79 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=102.5
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHHH-HHHHHHH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFAV-TFSVVFA 123 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~-~~~~~~~ 123 (167)
.+..++|++++...+.+.+.+|+.|.+.||+|+|..+++++..+..+..++++ +++.++++|.++|++++ ......+
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 34457799999999999999999999999999999999998888888777776 88999999999999764 5568899
Q ss_pred HHhccccchh-hHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666 124 YVADVTEEHE-RSLAYGLVSSETNQ--YSSPSLTPFYYYCNN 162 (167)
Q Consensus 124 ~~~~~~~~~~-r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~ 162 (167)
+++|.+|+|+ |++++|..-.+.++ .+||.+||.+++...
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G 224 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG 224 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC
Confidence 9999999655 79999999988888 999999999998643
No 62
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.54 E-value=6.7e-13 Score=99.54 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
...++|.+.++.+.++ .+.+...+...++..++.+..|++.||+|||+.+..+.....+....+.. +.+.+.+..++
T Consensus 239 ~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 239 LLNWLPSLLVGQGLSR-SQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHHhCCCCh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4567788888765444 56688999999999999999999999999999887765544444333332 44555555566
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|+. .+..+...++..|.+|+++|+++.|+.+....+ .+||.++|.+.+.
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~ 370 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLAL 370 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhcc
Confidence 6664 456678889999999999999999999998888 8999999988764
No 63
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.54 E-value=1.1e-12 Score=100.43 Aligned_cols=147 Identities=9% Similarity=-0.027 Sum_probs=100.6
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.++...+..++....... ...++|.|+++..+.+..+.++..+...++..++.+.+|+++||+|||+.+........
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~ 335 (467)
T PRK09556 257 NPVIWLLCFANIFLYIVRIG-IDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALAL 335 (467)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 34455555544444444333 46788999877666666677888888999999999999999999998887655433222
Q ss_pred hhH--HhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhh
Q psy16666 92 LPI--PLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYY 159 (167)
Q Consensus 92 ~~~--~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~ 159 (167)
+.. ..+.. +.+...+..++.|.. .+........+.|..|+++|+++.|+.+...++ +++|.+.|.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 336 IIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 221 11221 344444555556643 233333446777999999999999999988774 789999999987
No 64
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.53 E-value=4e-13 Score=99.13 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..+..|.+.++.+.++ .+.+++.+...++..+++++.|+++||+|||+++..+..+..++...... +.+.+++.+.+
T Consensus 22 ~~~~~~~~~~~~~~s~-~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGV-TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGL 100 (377)
T ss_pred hhhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667787877776665 46699999999999999999999999999999999987777766655443 77888888888
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.|++. ...+.....+.|++| |+|+++.++.....++
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 137 (377)
T TIGR00890 101 ASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGL 137 (377)
T ss_pred HhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcch
Confidence 88865 455667777888886 5699999998887766
No 65
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.53 E-value=7.2e-13 Score=100.07 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-------TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI 85 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (167)
++++...+..++....... ...+.+.+.++.+.+ .....+...+...+...++.++.|+++||+|+|+++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~ 286 (418)
T TIGR00889 208 KRMAIFFFFSMLLGAPLQI-TNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLL 286 (418)
T ss_pred CCeeeHHHHHHHHHhHHHH-HHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3344444444554444333 456667777765532 22456888899999999999999999999999999999
Q ss_pred HHHHHHhhHHhhhH------HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHH-HHHhh--hhccchhh
Q psy16666 86 TVFVTCLPIPLMTL------DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVS-SETNQ--YSSPSLTP 155 (167)
Q Consensus 86 ~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~--~~gp~i~g 155 (167)
+.++..+....+.. +.+.+++..++.|+.. ...+....++.|.+|+++|++++|+.+ ...++ ++||.++|
T Consensus 287 ~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G 366 (418)
T TIGR00889 287 SLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSG 366 (418)
T ss_pred HHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 87777665444332 1234455667777754 455677889999999999999999997 45555 89999999
Q ss_pred Hhhhhc
Q psy16666 156 FYYYCN 161 (167)
Q Consensus 156 ~l~~~~ 161 (167)
.+.+..
T Consensus 367 ~l~~~~ 372 (418)
T TIGR00889 367 VMVEKM 372 (418)
T ss_pred HHHHHh
Confidence 998753
No 66
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.53 E-value=4e-13 Score=101.96 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHH
Q psy16666 49 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVF 122 (167)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~ 122 (167)
..+.+++.+...++..++++++|+++||+|||+++..+.++..++..+... +.+.+++.+++.|++. ...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 456699999999999999999999999999999998887766665544421 4457888999999864 5667889
Q ss_pred HHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 123 AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
+++.|.+|+++|+++.++.+....+ .++|.++
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888777 7777766
No 67
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.53 E-value=1.1e-12 Score=104.69 Aligned_cols=107 Identities=10% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy16666 54 LIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTE 130 (167)
Q Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 130 (167)
....+..++.+++.++.|+++||+|||+++..+.++.+++..++.. +.+.+++.+++.++ .++..+...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455677889999999999999999999999887777776655544 44455555556665 45677888999999999
Q ss_pred chhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 131 EHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 131 ~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+++|++++|+.+....+ ++||.+++.+...
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888 9999999877653
No 68
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.52 E-value=6.7e-13 Score=98.27 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=102.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH--HHHHH--
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL--FLLIT-- 86 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~--~~~~~-- 86 (167)
++++++..++..++....... ...+.|.|.++..+.+..+.++..+...+...++.+..|+++||++||+ .....
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 291 (399)
T TIGR00893 213 KDRRVWGLALGQFLVNIGLGF-FLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKT 291 (399)
T ss_pred cCHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 345566666666666555544 5778898887766666667788999999999999999999999999886 11111
Q ss_pred ----HHHHHhhHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 87 ----VFVTCLPIPLMTL--DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 87 ----~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
.....+....... +.+.......+.+...+..+...+++.|..|+++|+++.++.+...++ .++|.+.|.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~ 371 (399)
T TIGR00893 292 AIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIA 371 (399)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhc
Confidence 1111111111111 222222223333334456788999999999999999999999998888 89999999887
Q ss_pred hh
Q psy16666 159 YC 160 (167)
Q Consensus 159 ~~ 160 (167)
+.
T Consensus 372 ~~ 373 (399)
T TIGR00893 372 AT 373 (399)
T ss_pred cC
Confidence 64
No 69
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.52 E-value=1.5e-12 Score=95.08 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH-HHHHHHHHHHhh
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL-FLLITVFVTCLP 93 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~ 93 (167)
++...+..+........ ...+.|.+.++..+.+..+.+...+...++..++.++.+++.||+|||+ .+..+.....++
T Consensus 177 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYG-LLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444444444434 5777888888764555567799999999999999999999999999999 888887766666
Q ss_pred HHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 94 IPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 94 ~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
...... +.+...+..++.|++. ...+...+++.|..|+++|++..+..+...++ .++|.+.|.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~ 327 (352)
T cd06174 256 LLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT 327 (352)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555543 4566677777888754 56789999999999999999999999998888 8999999988753
No 70
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.52 E-value=9.4e-13 Score=97.14 Aligned_cols=147 Identities=16% Similarity=0.193 Sum_probs=102.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+++++......+........ .....+.+.++.+.++ .+.+...+...+...++.+..|+++||+|||+.+..+.....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~ 281 (377)
T TIGR00890 204 TPQFWVLYLSFFLNAVSGLL-LIGLYKPYGQSLGLSD-GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISA 281 (377)
T ss_pred CccHHHHHHHHHHHhHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 34444444444444333322 3455666766665444 456888899999999999999999999999999888766666
Q ss_pred hhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++...... +...++...++.++. +...+...+++.|.+|+++|+++.|+.+....+ .++|.+.|.+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 282 VGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred HHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65544332 122233334455553 344556778899999999999999999988888 8999999988754
No 71
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.51 E-value=1.2e-12 Score=97.63 Aligned_cols=129 Identities=10% Similarity=0.088 Sum_probs=96.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH-Hhhh--HHHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI-PLMT--LDTWWFFAMISI 110 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~ 110 (167)
..++|.|.++..+.+..+.+.+.+...++..++.+..|+++||+|||+.+..+.....+.. ..+. .+.+.+.+..++
T Consensus 258 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 258 QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 5567877766555555677889999999999999999999999999998887755443222 2222 244444444455
Q ss_pred HHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666 111 SGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN 162 (167)
Q Consensus 111 ~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~ 162 (167)
.+. ..+..+...+++.|..|+++|+++.|+.+...++ .++|.++|.+.+..+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 554 3455667788999999999999999999888877 999999999987543
No 72
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.51 E-value=7.5e-14 Score=103.04 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..+..|.+.++.+.+. .+.+++.+...++..++.++.|+++||+|||+++..+..+..++..+... +.+.+++.+++
T Consensus 14 ~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 14 FALAMPYLVEEIGLSK-TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred hhhhhHHHHHHhCCCH-hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3555676666666555 46699999999999999999999999999999999987777666555443 77888888999
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhcc-chhhHhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSP-SLTPFYY 158 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp-~i~g~l~ 158 (167)
.|++. ...+...+++.|++|+++|+++.++.+....+ .++| .+++.+.
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 144 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA 144 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH
Confidence 99864 46678899999999999999999998888777 7777 3554443
No 73
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.51 E-value=3.3e-13 Score=99.20 Aligned_cols=146 Identities=17% Similarity=0.323 Sum_probs=111.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
++.++++++.-.+...+.+..+ .++.+..+.+.++++.++ .|.+++.+...+...+...+.|.+.||+|.|++...+.
T Consensus 9 k~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~-~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~ 86 (417)
T COG2223 9 KRIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSE-GQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSM 86 (417)
T ss_pred ccchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCH-HHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHH
Confidence 3344555555555555555555 435666666666666555 56699999999999999999999999999999999887
Q ss_pred HHHHhhHHhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh------hhccchhhH
Q psy16666 88 FVTCLPIPLMTL-----DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ------YSSPSLTPF 156 (167)
Q Consensus 88 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~gp~i~g~ 156 (167)
++..+....... ++|.++++.++.|+.++.+.....++++++|||++|.++|++. ..|+ .++|.+...
T Consensus 87 ~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 87 LLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHH
Confidence 777765555443 5678999999999999999999999999999999999999988 5555 556655443
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.50 E-value=9.1e-13 Score=97.76 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH-hh
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC-LP 93 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~-~~ 93 (167)
++......++....... ...++|.|.++..+.+..+.+.......+...++.++.|+++||+|||+.+.....+.. ..
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYL-ITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 34344444444444333 46778888866555555566888888999999999999999999999997765433222 22
Q ss_pred HHh---hh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHH-Hhh--hhccchhhHhhhhcc
Q psy16666 94 IPL---MT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSE-TNQ--YSSPSLTPFYYYCNN 162 (167)
Q Consensus 94 ~~~---~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~~~ 162 (167)
... +. .+.+......++.++. +...+..++++.|.+|+++|+++.++.+.. ..+ .++|.++|.+.+..+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 300 VPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 111 11 1344455555666664 456778899999999999999999985443 334 689999999987543
No 75
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.50 E-value=7.5e-13 Score=110.72 Aligned_cols=153 Identities=14% Similarity=0.103 Sum_probs=108.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhHHH--HHHHHHH--hhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH
Q psy16666 9 GIGEPSVYHALVVIFLEFFAWGLLTM--PIISVLN--RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL 84 (167)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 84 (167)
..+++++..++...++..++...... ..+..+. .+.........++..+++.+...+.++++|+++||+|||+++.
T Consensus 7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~ 86 (1140)
T PRK06814 7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAK 86 (1140)
T ss_pred hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHH
Confidence 34556666666666666665433111 2222221 2223333455688888999999999999999999999999764
Q ss_pred HH----HHHHHhhHHhhh-HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhH
Q psy16666 85 IT----VFVTCLPIPLMT-LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 85 ~~----~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~ 156 (167)
.. ..........+. .+.+.++++++++|++. ...|...+++.|++|+++|++++|+.+...++ ++||+++|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~ 166 (1140)
T PRK06814 87 ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGL 166 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 32 111222222222 37888999999999975 46689999999999999999999999999998 999999999
Q ss_pred hhhhc
Q psy16666 157 YYYCN 161 (167)
Q Consensus 157 l~~~~ 161 (167)
+....
T Consensus 167 l~~~~ 171 (1140)
T PRK06814 167 ATISG 171 (1140)
T ss_pred HHhcc
Confidence 87643
No 76
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.50 E-value=1.4e-12 Score=100.50 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVT 90 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~ 90 (167)
++.++..+...+...+++.. ..++++.|+++..+.+..+.+...+.+........+++|+++|| +|||+++..+..+.
T Consensus 20 p~~~~~~~~~~~~~~~~~y~-~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~ 98 (500)
T PRK09584 20 PKAFYLIFSIELWERFGYYG-LQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVL 98 (500)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 34577777777888888655 57888999865555554555666666665555666789999999 59999999997777
Q ss_pred HhhHHhhhH---HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchh--hHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 91 CLPIPLMTL---DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHE--RSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 91 ~~~~~~~~~---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++...+.. +.+.+.+.+.+.|++.+ ..+...+++.|++|+++ |..+.++.+...++ .+||.++|++.+.
T Consensus 99 ~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~ 176 (500)
T PRK09584 99 AIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK 176 (500)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766555543 23445566777888665 45677889999998643 45678888888888 8899999988753
No 77
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.50 E-value=3.3e-12 Score=94.57 Aligned_cols=147 Identities=14% Similarity=0.124 Sum_probs=100.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+++++......++....... ....+|.+.++..+.+..+.+...........++.+..|++.||+|||+.+..+.....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 276 (375)
T TIGR00899 198 SRDTRLLFVACTLMWGCNIL-YIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGV 276 (375)
T ss_pred CcchHHHHHHHHHHHHHHHH-HHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHH
Confidence 34444444444444333323 35566777765545555566888777777778888999999999999998887755544
Q ss_pred hhHHhhh--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMT--LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+...... .+.+......++.|++ +...+....+..|..|++ |+++.++++...++ .++|.++|.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~ 349 (375)
T TIGR00899 277 AFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER 349 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4433322 2555555666777764 345567778889988764 67999999888777 8999999988764
No 78
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.49 E-value=7.7e-13 Score=100.78 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH------HHHHHHHHH
Q psy16666 35 PIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL------DTWWFFAMI 108 (167)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 108 (167)
..+|.+.+ . +.+..+.+++.+...++..+++++.|+++||+|||+++..+..+.++....+.. +.+.+++.+
T Consensus 50 ~~~p~l~~-~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
T PRK11273 50 LAMPYLVE-Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 127 (452)
T ss_pred HhhHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH
Confidence 44565554 4 445567799999999999999999999999999999999887766665554432 455667778
Q ss_pred HHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 109 SISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 109 ~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
++.|++.+ ..+.....+.|++|+++|++++++.+...++
T Consensus 128 ~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 167 (452)
T PRK11273 128 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 167 (452)
T ss_pred HHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 88888654 4566778889999999999999998877776
No 79
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.49 E-value=4.8e-12 Score=94.78 Aligned_cols=127 Identities=10% Similarity=0.119 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 110 (167)
...+.|.|.++..+.+..+.+.+.+...+...++.+++|+++||+|||+.+..+.....+..... ..+.+..++.+++
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35678888866555555667888777778888899999999999999998776644443333222 2345555555665
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++. +...+....+..|..|+ +|+++.++++...++ .+||.++|.+.+.
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553 33445566778898875 589999998887777 8999999988764
No 80
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.49 E-value=3e-12 Score=97.96 Aligned_cols=148 Identities=13% Similarity=0.035 Sum_probs=111.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++++++...+..++..+.... ...++|.|.++..+.+..+.++......++..++.++.|++.||+|||+.+..+..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~ 331 (485)
T TIGR00711 253 KYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILY 331 (485)
T ss_pred cCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 345555555555555555433 4667899988876667778899999999999999999999999999999988887666
Q ss_pred HhhHHhhh--H----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 91 CLPIPLMT--L----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 91 ~~~~~~~~--~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.++...+. . +.+......++.|++. ...++......+..|+++|+++.++.+....+ .+|+.+.|.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 332 AVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555443 1 3455555667777754 44556667777888999999999999998888 899999888875
No 81
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.49 E-value=1.4e-12 Score=97.73 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+|.++......++...+++. ..|++|.|.++..+.+..+.+++.+...+...+++++.|+++||+|||+.+..+....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~ 79 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSA-YFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLL 79 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 35677777777888887766 69999999887655566677999999999999999999999999999999887644443
Q ss_pred hhHHh---hhH------H-HHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 92 LPIPL---MTL------D-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 92 ~~~~~---~~~------~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
+.... +.. + .+...+.+++.|+. +...+....+..|..+ ++++..+......++ ++||.++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 80 VLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhh
Confidence 32221 111 1 11223344555553 3445566666666533 234455666555566 78888888775
Q ss_pred hh
Q psy16666 159 YC 160 (167)
Q Consensus 159 ~~ 160 (167)
+.
T Consensus 158 ~~ 159 (396)
T TIGR00882 158 SI 159 (396)
T ss_pred cc
Confidence 43
No 82
>TIGR00895 2A0115 benzoate transport.
Probab=99.48 E-value=6.1e-12 Score=93.53 Aligned_cols=124 Identities=14% Similarity=0.130 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
...++|.+.++.+.++ .+.+...+...++..++.++.|+++||+|||+................. .+.+......++
T Consensus 269 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (398)
T TIGR00895 269 LTNWLPKLMVELGFSL-SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347 (398)
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 4566776666655544 4668888999999999999999999999998554443333333222222 245555666677
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
.|++ +...+...+++.|.+|+++|+++.|+.+....+ .+||.++|.+
T Consensus 348 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 7774 456778899999999999999999999998888 8999998875
No 83
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.48 E-value=8.5e-12 Score=93.04 Aligned_cols=127 Identities=20% Similarity=0.177 Sum_probs=94.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHHHHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISG 112 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 112 (167)
...++|.|.++.+.++ .+.+...+...++..+++.+.|++.||+|+|+++..+.....++...+. +.........+.|
T Consensus 219 ~~~~lp~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~g 296 (381)
T PRK03633 219 LYGLMPLYLNHQGMSD-ASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQAAMAPALFILG 296 (381)
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 4667898988765444 4668888889999999999999999999999988877655555443332 2222333445556
Q ss_pred HH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 113 VF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 113 ~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
.. ....|...+++.|..|+++++...+..+...++ .+||.++|++.+..
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~ 348 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY 348 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 356788889999999988888888888777777 89999999997653
No 84
>PRK10504 putative transporter; Provisional
Probab=99.47 E-value=5.5e-12 Score=96.44 Aligned_cols=150 Identities=13% Similarity=0.044 Sum_probs=109.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
+++++...+...++....... .....|.|.++..+.+..+.++......++..++.++.|++.||+|||+++..+..+.
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~ 337 (471)
T PRK10504 259 RTRTFSLGLAGSFAGRIGSGM-LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGL 337 (471)
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 556666666666666665433 4566788887655566667788888888888889999999999999999988876655
Q ss_pred HhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 91 CLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 91 ~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
.+....+.. +.+......++.|++. ...+..+.++.+..|+++|+++.++.+....+ .+||.++|.+.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 338 ALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554333322 2223334455666643 45677888999999999999999999998888 99999999887643
No 85
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.47 E-value=2.8e-12 Score=95.68 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH----HHHHHH
Q psy16666 14 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL----LITVFV 89 (167)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~----~~~~~~ 89 (167)
..+.+....+....+.+. ..|++|.|.++.+.+. .++|++.+...+...++++++|+++||+||+... ..+..+
T Consensus 5 ~~~~l~~~~~~~~~~~~~-~~p~l~~~l~~~g~s~-~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGI-FLPFFPAWLKGIGLGE-EMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334566667777777666 7999999999876655 5779999999999999999999999999985433 222222
Q ss_pred HHhhHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 90 TCLPIPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
..+.......+.+.+++.+.+.+.+ +...|...++..|. +++|++..|......++ ++||.++|.+.+.
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 83 FAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222344788888888877764 45567777777654 56788999998888887 8999999988765
No 86
>PRK09952 shikimate transporter; Provisional
Probab=99.47 E-value=2.9e-12 Score=97.30 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHH--------HHHHHHHHHHHHH-HHHHHHHHHHh
Q psy16666 58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTW--------WFFAMISISGVFA-VTFSVVFAYVA 126 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~g~~~-~~~~~~~~~~~ 126 (167)
...++..+++++.|+++||+|||+++..+..+..++...... +++ .+++.|+++|++. +..+....++.
T Consensus 72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~ 151 (438)
T PRK09952 72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV 151 (438)
T ss_pred HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 445667788899999999999999999998777776655443 433 4778899999964 56788889999
Q ss_pred ccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 127 DVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 127 ~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
|++|+++|++..+..+....+ .+++.+...+
T Consensus 152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888776666 4444444433
No 87
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.47 E-value=6.7e-12 Score=96.72 Aligned_cols=148 Identities=11% Similarity=0.076 Sum_probs=111.5
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.+....+..+........ ...++|.|+++..+.+..+.|.......++..++.++.|++.||+|+|+.+..+..+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~ 336 (495)
T PRK14995 258 HRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSA 336 (495)
T ss_pred CcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 44444444444444444333 35678889988877777888999999999999999999999999999998887766665
Q ss_pred hhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++...+.. +.+......++.|++. ...++....+.+..|+++++.+.+..+...++ .+|+.+.|.+.+.
T Consensus 337 ~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 337 LSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443321 4444555667778754 45567788888889999999999999998888 8999999988753
No 88
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.47 E-value=8.3e-12 Score=96.10 Aligned_cols=128 Identities=16% Similarity=0.138 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh-hHHhh--hH--HHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL-PIPLM--TL--DTWWFFAM 107 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~ 107 (167)
...++|.|+++..+.+....++......++..++.+..|+++||+|||+.+..+.+...+ +...+ .. +...+.+.
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 466889888665444444556677778888999999999999999999988777543322 22211 11 34455556
Q ss_pred HHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 108 ISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 108 ~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+++.++. +...+....+++|.+|++.|+++.+..+..... .++|.+.+++.+.
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~ 404 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES 404 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654 344556778888999999999999975444434 7888888887654
No 89
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.46 E-value=4.4e-12 Score=96.80 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=94.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHH-HHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFA-MISI 110 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 110 (167)
..++|.+.++++.+.. +.+++.+...+...++.++.|+++||+|||++++.+..+..+....... +.+.+.. .+++
T Consensus 39 ~~~~~~i~~~~g~s~~-~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 117 (455)
T TIGR00892 39 TVFFKELQQIFQATYS-ETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI 117 (455)
T ss_pred hhhHHHHHHHhCcchh-HHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4456777777776665 5589999998999999999999999999999998887666665555433 5565544 4577
Q ss_pred HHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 111 SGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 111 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.|++.+ ..++..+++.|+++ ++|+++.++.+....+ .++|.+++.+.+
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 787544 34666778888885 7899999999988877 788888887765
No 90
>PRK09952 shikimate transporter; Provisional
Probab=99.46 E-value=1.3e-11 Score=93.73 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hH----HHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TL----DTWWFFA 106 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~----~~~~~~~ 106 (167)
...+.|.|.++..+.+......+.....+...++.+..|+++||+|||+.+..+.++..+....+ .. +.+.+..
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFF 348 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 46678888765544444443444455667778888999999999999998887755544432211 11 2233333
Q ss_pred HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHh-h--hhccchhhHhhhhc
Q psy16666 107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETN-Q--YSSPSLTPFYYYCN 161 (167)
Q Consensus 107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~--~~gp~i~g~l~~~~ 161 (167)
..++.++. +...+..+++++|.+|+++|+++.++.+.... + .++|.+.+++.+..
T Consensus 349 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 349 SIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444554 34566788999999999999999998765544 3 78999999987644
No 91
>PRK03699 putative transporter; Provisional
Probab=99.46 E-value=9.7e-12 Score=93.16 Aligned_cols=146 Identities=8% Similarity=0.009 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
+.++...+..++....... ...++|.|.++..+.+..+.+...+...++..++.+..|+++||++||+.+.....+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLT-FISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 4444444444554444433 577899999776566666778888999999999999999999999999988776555544
Q ss_pred hHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 93 PIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 93 ~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
....+.. +.+...+..++.|+. ++.++...++..|..|+ ++++..+......++ .++|.+.|.+.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~ 355 (394)
T PRK03699 284 LMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH 355 (394)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4433332 444455555667764 45667777778887754 466777877777766 8999999999875
No 92
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.46 E-value=2.7e-12 Score=96.85 Aligned_cols=149 Identities=15% Similarity=0.252 Sum_probs=96.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666 9 GIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF 88 (167)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (167)
..++++++.+.+..++...+.+. ..|++|.|+++..+.+..+.|++.+...++..++++++|+++||+|||+++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~ 84 (420)
T PRK09528 6 YLKNPNYWIFSLFFFFFFFIWSS-WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS 84 (420)
T ss_pred hhcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 34567788777778888887766 79999999988555566678999999999999999999999999999999877644
Q ss_pred HHHhhHH-hhhH---HHHH--HHHHHHHHHHH-HH----HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 89 VTCLPIP-LMTL---DTWW--FFAMISISGVF-AV----TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 89 ~~~~~~~-~~~~---~~~~--~~~~~~~~g~~-~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
+..+... .+.. +.+. ......+.++. +. ..+....+..+. +++++..++..+...++ .++|.++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g 162 (420)
T PRK09528 85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAG 162 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHH
Confidence 4333221 1111 1111 11111222221 11 122223332221 24456667777666666 88999988
Q ss_pred Hhhhh
Q psy16666 156 FYYYC 160 (167)
Q Consensus 156 ~l~~~ 160 (167)
.+.+.
T Consensus 163 ~l~~~ 167 (420)
T PRK09528 163 ILFNI 167 (420)
T ss_pred HHHhc
Confidence 88653
No 93
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.46 E-value=9.9e-13 Score=100.43 Aligned_cols=114 Identities=13% Similarity=0.118 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DTWWFFAMISISGVFA-VTFSVV 121 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~ 121 (167)
.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++..+...+... +.+.+++.++++|+.. ...+..
T Consensus 73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~ 152 (465)
T TIGR00894 73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPAT 152 (465)
T ss_pred CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhH
Confidence 34456699999999999999999999999999999999887766665544322 3567788899999864 567889
Q ss_pred HHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 122 FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 122 ~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
..+++|++|+++|+++.++.+....+ .++|.+++.+.+.
T Consensus 153 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~ 193 (465)
T TIGR00894 153 HKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES 193 (465)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988877 8899998887653
No 94
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.46 E-value=1.5e-11 Score=92.08 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=97.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH-HHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-ITVFV 89 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~ 89 (167)
-+.+.+..++..++...+... ..|.+|.+.++..+.+..++|++.+...+...+.+++.+.++||+|||+.++ .+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~ 91 (393)
T PRK15011 13 FDLTSTAFLIVAFLTGIAGAL-QTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLL 91 (393)
T ss_pred ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 356667777778888888766 6899999887655555567799877665655555455544499999988754 44444
Q ss_pred HHhhHHhhh--HHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccchhhH--HHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 90 TCLPIPLMT--LDTWWFFAMISI-SGVFAVTFSVVFAYVADVTEEHERS--LAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
..+...... .+.+.+++...+ .+..+...+...++..|..++++|. ...+..+...++ .+||.+++.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~ 168 (393)
T PRK15011 92 GVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM 168 (393)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 434333333 356655544444 4445556677788888877666553 344666666666 899999998875
No 95
>TIGR00898 2A0119 cation transport protein.
Probab=99.46 E-value=4.2e-13 Score=103.38 Aligned_cols=123 Identities=17% Similarity=0.123 Sum_probs=98.6
Q ss_pred HHHHHHhhCCCc--hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHH
Q psy16666 36 IISVLNRTFPDH--TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISIS 111 (167)
Q Consensus 36 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 111 (167)
..|...++++.. +..+.++..+...++..++.++.|+++||+|||+++..+.++..++..... .+++.+++.+++.
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~ 190 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLV 190 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 445555665554 134669999999999999999999999999999999998777766555444 3788899999999
Q ss_pred HHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 112 GVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 112 g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
|++. +..+...+++.|.+|+++|+++.++......+ +++|.+++.+.
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 240 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP 240 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9865 56889999999999999999999998777666 66777666543
No 96
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.46 E-value=1.3e-11 Score=92.57 Aligned_cols=147 Identities=9% Similarity=0.027 Sum_probs=102.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++++.+.+.+..++....+.. ...++|.+.++. +.+..+.+...+...++..++.+..|++.||++||+.+..+..+.
T Consensus 203 ~~~~~~~l~~~~~~~~~~~~~-~~~~lp~~l~~~-g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~ 280 (393)
T PRK09705 203 FTPRAWTLGVYFGLINGGYAS-LIAWLPAFYIEI-GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ 280 (393)
T ss_pred cCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc-CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 455555555555555555434 577888888885 455567799999999999999999999999999999888876555
Q ss_pred HhhHHhhhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 91 CLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 91 ~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
.++...+.. +.... ..++.|++ +...+.......|..+ +++|++..++.+....+ .++|.+.|++.+..
T Consensus 281 ~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~ 356 (393)
T PRK09705 281 LVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS 356 (393)
T ss_pred HHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554443321 22222 12334543 3445656666667664 67899999999888777 89999999998764
No 97
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.45 E-value=9.9e-12 Score=93.70 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
...++|.|.++..+.+..+.+++.+...++..++.++.+++.||.++++.+..+..+..+....+.. +.+...+..++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3567788888855555567799999999999999999999999988777777776555555444432 44445555666
Q ss_pred HHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|++.+ ..+...+++.|..|+++|+++.|+++....+ .+||.+.|.+.+.
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~ 374 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM 374 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH
Confidence 676544 4456778999999999999999999888777 9999999998865
No 98
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.45 E-value=1.5e-11 Score=92.33 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=96.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHH-HHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLL-ITVFVT 90 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~ 90 (167)
+|+++...+..++....... ...+.|.|.++.+.+. .+.+...+...++..++.+..|+++||+|||+.+. .+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~g~s~-~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~ 298 (402)
T TIGR00897 221 NPNVLLGGMVRIINTIGLFG-FAVFLPMFVAELGFST-SEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC 298 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 34444444444444444333 4667898988765444 45588888889999999999999999999887653 222222
Q ss_pred HhhHHh---hh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 91 CLPIPL---MT----LDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 91 ~~~~~~---~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+.... .. .+.+...+..++.|+..+...+....+.|.. |++|+++.|+.+...++ .++|.++|.+.+.
T Consensus 299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~ 376 (402)
T TIGR00897 299 GIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF 376 (402)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221111 11 1344455566667764433344456667764 56899999999998888 8999999988865
No 99
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.45 E-value=2e-12 Score=98.15 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=92.1
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh------HHHHHHHHHHH
Q psy16666 36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------LDTWWFFAMIS 109 (167)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 109 (167)
..|. .++. +.+..+.++..+...++..++.++.|+++||+|||+++..+.++..++..... .+.+.+.+.++
T Consensus 49 ~~p~-~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (438)
T TIGR00712 49 AMPY-LVEQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLF 126 (438)
T ss_pred hhHH-HHHc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 3444 4455 55556779999999999999999999999999999998888666665544332 13455666778
Q ss_pred HHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 110 ISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 110 ~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
+.|++. ...+.....+.|++|+++|++++++.+...++ .++|.+.+...
T Consensus 127 l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~ 178 (438)
T TIGR00712 127 LNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGM 178 (438)
T ss_pred HHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 888754 45577788899999999999999999888777 66776665443
No 100
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.44 E-value=3.1e-11 Score=89.11 Aligned_cols=150 Identities=10% Similarity=0.047 Sum_probs=99.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFV 89 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~ 89 (167)
+++..+...+..++....+.. ...++|.|.++.+. +..+.+...+...++..++++..|++.||++ ||+.+..+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~-~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~ 272 (355)
T TIGR00896 195 RSPLAWQVTVFFGLQSGLYYS-LIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVL 272 (355)
T ss_pred cCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHH
Confidence 345555444444444444333 46788999887644 4556799999999999999999999999995 66666666555
Q ss_pred HHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666 90 TCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK 163 (167)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~ 163 (167)
.+++...+.. +.... ...++.|++. ..++...+.+.+..+ +++++...++.+....+ .++|.+.|++.+..++
T Consensus 273 ~~~~~~~~~~~~~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 273 QLVGLCGLLFAPMHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHHhhhhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5444433332 22222 2345567654 455666666665544 56778888888777666 8899999999876543
No 101
>PRK03545 putative arabinose transporter; Provisional
Probab=99.43 E-value=1.7e-11 Score=91.61 Aligned_cols=146 Identities=12% Similarity=0.090 Sum_probs=97.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.++..+...++....... ...+++.+.++..+.+..+.+.+.+...++..++.++.|+++||++||+....... ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~-~~ 281 (390)
T PRK03545 204 RPALVSLYLLTVVVVTAHFT-AYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIAL-LL 281 (390)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH-HH
Confidence 34444444444433333322 34566777766555555677888899999999999999999999998875443333 22
Q ss_pred hhHHhh---hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLM---TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~---~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
...... ..+.+.+.+..++.|+.. ...+...+.+.|..| ++|+++.|.++....+ .+||.++|.+.+.
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 282 VCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH 355 (390)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222221 224555666667777754 344566777888766 5789999999887777 8899999998864
No 102
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.42 E-value=2.5e-11 Score=92.85 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=121.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch--HHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK--LFLLITV 87 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~ 87 (167)
++.|+....++..++..-+... +......|.++..+.+..+...+.....+...++...+|++.||+|.| +++..++
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISL 356 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 3456677777777777777666 577778888866666666667788889999999999999999999988 7877775
Q ss_pred HHHH-hhHH-hh--------hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 88 FVTC-LPIP-LM--------TLDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 88 ~~~~-~~~~-~~--------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
.... +... ++ ..+.+.+++..++.|+ .++..+...++.+|+.|+++.+..+|++...... .+||.+.
T Consensus 357 ~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 357 ILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5442 2222 22 2267778888888887 4678899999999999999999999999988877 9999999
Q ss_pred hHhhhhcccCC
Q psy16666 155 PFYYYCNNKGR 165 (167)
Q Consensus 155 g~l~~~~~~~~ 165 (167)
|.+.+..++.|
T Consensus 437 g~i~~~tg~~r 447 (477)
T PF11700_consen 437 GLITDATGSQR 447 (477)
T ss_pred HHHHHHhCCch
Confidence 99988765443
No 103
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.42 E-value=6.3e-12 Score=96.62 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-H---HHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-L---DTWWFFAMI 108 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~ 108 (167)
...++|.|.++..+.+..+.+.+.+...++..++.++.|+++||+|||+++..+..+..+...... . +.+......
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLL 373 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 356789998655455556779999999999999999999999999999988877554444332221 1 223333333
Q ss_pred HHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 109 SISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 109 ~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++.+. ..+..+...++++|.+|+++|++++++.+....+ .+||.++|.+.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 374 FFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred HHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 44333 3344566778899999999999999998888777 8899999988764
No 104
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.42 E-value=4.1e-11 Score=89.42 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=106.3
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+|+++...+..++....... ...+.|.|.++.+.++ .+.|...+...+...+..++.|++.||+|+|+.+..+....+
T Consensus 204 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~g~s~-~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~ 281 (382)
T PRK11128 204 EPTVWRFLLCVSLLQGSHAA-YYGFSAIYWQAAGYSA-STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGV 281 (382)
T ss_pred ChhHHHHHHHHHHHHHHhHh-HHHHHHHHHHHCCCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 44555555555555444433 4667788887765544 566999898989999999999999999999999888877666
Q ss_pred hhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHH-Hhh--hhccchhhHhhhhc
Q psy16666 92 LPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSE-TNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 92 ~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~~ 161 (167)
+...... .+.+.+++..++.|+.. ...+....++.+. +++++++..+..+.. .+. .+||.++|.+.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 282 VRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6554443 36676777778888854 4566777888886 566678889887644 333 78999999998753
No 105
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.42 E-value=5.9e-12 Score=93.96 Aligned_cols=136 Identities=20% Similarity=0.206 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch----HHHHHHHHHHHhhHHh
Q psy16666 21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVFVTCLPIPL 96 (167)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~ 96 (167)
..+....+.+. ..|++|.|.++.+.+. .++|+..+...+...++++++|+++||+||| +.+.+...........
T Consensus 12 ~~~~~~~~~g~-~~p~l~~~l~~~g~s~-~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 89 (382)
T PRK11128 12 SYFGYFFAYGV-FLPFWSVWLKGQGYTP-ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF 89 (382)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHhcCCCH-HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35555566566 7999999999886655 5779999999999999999999999999984 3332222222222222
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 97 MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
...+.|.+++.+.+.|+.. ...+...++..++ +++|+++.+......++ .+||.+++++.+.
T Consensus 90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~ 154 (382)
T PRK11128 90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW 154 (382)
T ss_pred hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2236777778888888754 4566667777765 35577777777777777 9999999988754
No 106
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.7e-11 Score=89.64 Aligned_cols=148 Identities=17% Similarity=0.184 Sum_probs=113.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
.++++++..++..++...+. +..++++.+++++..+.+...++++...++++..+++...|+++|| +.|+.+.....+
T Consensus 208 l~~p~v~~~l~~t~l~~~g~-F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l 285 (394)
T COG2814 208 LRRPGVLLGLLATFLFMTGH-FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLL 285 (394)
T ss_pred hcCchHHHHHHHHHHHHcch-hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHH
Confidence 46788888888888888775 4368899889998888777888999999999999999999999999 888887777555
Q ss_pred HHhhHHhhhH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 90 TCLPIPLMTL---DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++....+.. +.+...+..+++|+.. ......+..+++ ..||++..+.+++....++ .+|..+||.+.+.
T Consensus 286 ~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~ 361 (394)
T COG2814 286 LALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA 361 (394)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554444433 4555555555555533 233344555555 3367899999999999999 9999999998875
No 107
>PRK12382 putative transporter; Provisional
Probab=99.41 E-value=1.6e-11 Score=91.80 Aligned_cols=125 Identities=17% Similarity=0.154 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
...+.|.|.++.+..+ .++......++..++++..|++.||+|+|+.+..+..+..+....+.. +.+...+..++
T Consensus 235 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 235 IGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4566777777654432 255666777888899999999999999999888876666555544433 45555666677
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|++. ...+...+.+.|.+|+++|+++.|+.+....+ .+||.+.|.+.+.
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS 364 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754 45677788889999999999999999998887 8999999998764
No 108
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.40 E-value=6e-12 Score=92.92 Aligned_cols=126 Identities=15% Similarity=0.091 Sum_probs=98.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM-TLDTWWFFAMISIS 111 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 111 (167)
..|.+|.+.++++.+.. +.+++.+...++..++.++.|+++||+|||+++..+.....++.... ..+.+.+++.+++.
T Consensus 19 ~~~~lp~l~~~~~~s~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFS-VAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALI 97 (355)
T ss_pred CcccHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46788888888876664 66999999999999999999999999999999988866555544433 23667777888888
Q ss_pred HHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 112 GVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 112 g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
|++.+ ..+.....+.|.+| ++|+++.+..+...++ .++|.+++.+.+.
T Consensus 98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88654 45566777888886 6799999999887777 7788777776543
No 109
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.40 E-value=1.8e-11 Score=91.73 Aligned_cols=128 Identities=16% Similarity=0.241 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTF---LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAM 107 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 107 (167)
..+.++.|.++..+... ...+.+.+...++..++.+..|+++||+|||+.+..+.....+...... .+.+...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 46777777776543322 2235666677788889999999999999999998888666555444333 255666667
Q ss_pred HHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 108 ISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 108 ~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++.|++. ...+...+.+.|..|+++|++.++..+....+ .+||.++|.+.+.
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~ 373 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN 373 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence 77778754 56677888889999999999999999888777 8999999988754
No 110
>PRK15075 citrate-proton symporter; Provisional
Probab=99.40 E-value=2.8e-11 Score=91.78 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh-hHHhh---hH--HHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL-PIPLM---TL--DTWWFFA 106 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~---~~--~~~~~~~ 106 (167)
...+.|.|.++..+.+..+.++......++..++.+.+|+++||+|||+.+..+.....+ ..... .. +......
T Consensus 257 ~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (434)
T PRK15075 257 ITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLA 336 (434)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 577789998875455555667788888899999999999999999999987776433322 11111 11 2222222
Q ss_pred HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhhcc
Q psy16666 107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYCNN 162 (167)
Q Consensus 107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~~~ 162 (167)
...+.++. +...+....+..|.+|+++|+++.++.+..... .++|.+.|++.+..+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 23333443 334455668899999999999999986554432 678999998877543
No 111
>KOG4686|consensus
Probab=99.39 E-value=8.9e-12 Score=88.05 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=116.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VF 88 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~ 88 (167)
.-.+++|.+.+..++...++.- ....-|.+.++..+.++...+.+.+.......+.+|+.|.++||+|++...+.+ ++
T Consensus 261 ~f~ppfw~~~iicv~yyva~fP-Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~ 339 (459)
T KOG4686|consen 261 TFYPPFWVLVIICVLYYVAWFP-FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACI 339 (459)
T ss_pred ccCccHHHHHHHHHHHHHHHHH-HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHH
Confidence 3457888888888777777522 344446666666666666778888888888999999999999999999877666 44
Q ss_pred HHHhhHHhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcc
Q psy16666 89 VTCLPIPLMTLDTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNN 162 (167)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~ 162 (167)
....+...+.++.+.-.....+.|......+ ..+..++.+.|+++-|++.|..++.+++ ++.|+++|.+.+.++
T Consensus 340 ~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 340 LTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 5555655666666666677778887655444 5788899999999999999999999999 999999999986543
No 112
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.1e-12 Score=96.76 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHh---HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 15 VYHALVVIFLEFFAWGL---LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
.+.+++..++.+.++.+ ......|...++.+ .+-.+.|++.+.+.+.+.++..+.|.++||.+.|..+..++++++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 34555666666666544 12334466666555 444577999999999999999999999999999999999999999
Q ss_pred hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh--hHhh
Q psy16666 92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT--PFYY 158 (167)
Q Consensus 92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~--g~l~ 158 (167)
+...++.+ +.+.+.+...+.|.+. ...|++...+..++++++||+..++.+++.++ .+.|++. +++.
T Consensus 106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~ 179 (448)
T COG2271 106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA 179 (448)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence 98888765 6677777788999865 46789999999999999999999999999999 6666666 5554
No 113
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.39 E-value=4.3e-11 Score=88.34 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhh
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG-FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 93 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 93 (167)
++...+..++....... ...++|.|.++.+ .+..+.+.+..... +...++.+++|++.||+|||+.+..+.++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~g-~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSA-ATVLTTLFLLDMG-FSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 33344444444444434 4678888888844 44456677776655 577899999999999999999888776665554
Q ss_pred HHhhhH-------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q psy16666 94 IPLMTL-------------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETN 146 (167)
Q Consensus 94 ~~~~~~-------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 146 (167)
...+.. +.+.+....++.++. +...+...++..|.+|+|+|++.+|+.++..+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 289 NAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 443221 234445555666775 45778999999999999999999999887664
No 114
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.39 E-value=1.8e-12 Score=82.76 Aligned_cols=104 Identities=24% Similarity=0.316 Sum_probs=84.1
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh
Q psy16666 57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHE 133 (167)
Q Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~ 133 (167)
+...++..++.++.|++.||+|||+.+..+.....+...... .+.+.....+++.|+.. ...+...+++.|..|+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 345677888999999999999999998888666665544443 36677777788888754 566788899999999999
Q ss_pred hHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 134 RSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 134 r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
|++..+..+....+ .++|.+++.+.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 99999999988888 8899999988643
No 115
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.38 E-value=7.2e-11 Score=88.44 Aligned_cols=125 Identities=15% Similarity=0.136 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
...+++.|.++.+.. ..+...+...++..++.+..|++.||+|+|+.+..+..+..++...... +.+...+..++
T Consensus 235 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 235 IATFITLYYAARGWD---GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHHcccc---cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456677777665432 2356667788888999999999999999999888776655555444332 55556666677
Q ss_pred HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.|++ +...+.......|..|+++|+++.++++..... .++|.+.|.+.+.
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7874 456677777888999999999999999988777 6788888888654
No 116
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.38 E-value=6.5e-11 Score=89.77 Aligned_cols=125 Identities=21% Similarity=0.183 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhH-Hhhh--H---HHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPI-PLMT--L---DTWWFFA 106 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~-~~~~--~---~~~~~~~ 106 (167)
...++|.|+++..+.+..+.+...+...+...++.++.|+++||+|||+.+.....+..+.. .... . +.+..+.
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFG 341 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 46788998876555555566787888788888999999999999999998776644332221 1111 1 2222222
Q ss_pred HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHh
Q psy16666 107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFY 157 (167)
Q Consensus 107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l 157 (167)
...+.... +...+....+++|.+|+|+|+++.|+.+...+. ...|.+.+.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l 396 (432)
T PRK10406 342 LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL 396 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 22222222 223346778899999999999999998876554 4466666644
No 117
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.37 E-value=7.4e-11 Score=90.08 Aligned_cols=143 Identities=18% Similarity=0.208 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcchHHHHHH-H
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLFLLIT-V 87 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~ 87 (167)
+++..+....+-..+++.. ..++++.|.++.+.+. .+.+++..+..+...+.+|+.|+++| |+|||+.++.. .
T Consensus 4 ~~li~~~~~~~Giq~~~~l-~~~~l~~yl~~lg~~~-~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWAL-QLSLLTPYVQELGIPH-AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 3445555555566666656 6888888998877755 56699999999999999999999999 59999988775 4
Q ss_pred HHHHhhHHhhhH--HH-----------------HHHHHHHHHHHH-HHHHHHHHHHHHhccccchhh--HHHHHHHHHHH
Q psy16666 88 FVTCLPIPLMTL--DT-----------------WWFFAMISISGV-FAVTFSVVFAYVADVTEEHER--SLAYGLVSSET 145 (167)
Q Consensus 88 ~~~~~~~~~~~~--~~-----------------~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~ 145 (167)
....++..++.. +. +..++...+.-+ .+...++..++++|..|+++| +.+.++.+...
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 444444444433 21 112222222223 345667889999999998866 57888888877
Q ss_pred hh--hhccchhhHh
Q psy16666 146 NQ--YSSPSLTPFY 157 (167)
Q Consensus 146 ~~--~~gp~i~g~l 157 (167)
++ .+|+.+++..
T Consensus 162 ~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 162 AIGNVLGYAAGAYS 175 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 77 8888888865
No 118
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.37 E-value=3.9e-11 Score=91.59 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHHHH--HH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLLIT--VF 88 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~--~~ 88 (167)
++++......++...+... ...++|.|.++.+ .+..+.++..+...++..++++..|+++||. ++|+..... .+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 318 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFA-PIIFLVPYAKDKG-VDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALL 318 (455)
T ss_pred chHHHHHHHHHHHHHHccc-hHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHH
Confidence 3444444444444444333 4667788888764 4456779999999999999999999999973 334333332 22
Q ss_pred HHHhhHHhh--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 89 VTCLPIPLM--TLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
...+..... ..+.+.+.+..++.|+.. ...+...+++.|.+|++++++.+++++...++ .+||.++|.+.+.
T Consensus 319 ~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~ 395 (455)
T TIGR00892 319 FNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDA 395 (455)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehh
Confidence 222322222 236666777778888754 56678889999999999999999999998888 9999999988764
No 119
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.37 E-value=6.2e-11 Score=87.51 Aligned_cols=148 Identities=7% Similarity=-0.057 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHH-HHHH-HHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLF-LLIT-VFV 89 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~-~~~~-~~~ 89 (167)
+.++.+.+..++....... ...+.|.|.++..+.+..+.+...+...++..++.+..|+++||.. ||+. +... ...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 294 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTG-ILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMAL 294 (379)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3444444444444444333 4677888887665555567788999999999999999999999864 3332 2222 111
Q ss_pred HHhhHHhhh----HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 90 TCLPIPLMT----LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 90 ~~~~~~~~~----~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
......... .+.+......++.|.. .+..+....+..|..|+++|+++.|+.+....+ .++|.+.|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 373 (379)
T TIGR00881 295 IIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF 373 (379)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence 122222211 1333444444555553 344456677899999999999999999998888 89999999998753
No 120
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.36 E-value=8.2e-11 Score=88.39 Aligned_cols=135 Identities=19% Similarity=0.150 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchH-HHHHHHHHHHhhH
Q psy16666 21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKL-FLLITVFVTCLPI 94 (167)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~-~~~~~~~~~~~~~ 94 (167)
..+.+....++ ..+.+|.|+++.+.+.+ ++|++...... .+..+++|+++||+ |||| .+..+....+++.
T Consensus 7 l~~~~~~~~~~-~~~~~~~~l~~~g~~~~-~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 7 LGFASGLPLAL-TSGTLQAWMTVEGLDIQ-TIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHcCCCHH-HHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34455555556 68899999998876664 66888665554 68899999999999 7765 5666655554443
Q ss_pred HhhhH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 95 PLMTL-----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 95 ~~~~~-----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
..... +.+.+.+..++.+.. +...++..+++.|+.|+|+|+++.++.....++ .+++.+++.+.+
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~ 155 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD 155 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33222 345555555555654 456678999999999999999999999887776 777777766654
No 121
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.36 E-value=5.3e-11 Score=90.08 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=101.7
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|+++..++..++...+... .....+.|.++..+.+ ...+.......++..++.+++++++||+|+|+++..+..+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~ 297 (437)
T TIGR00792 220 KNDQLLILCLAYLFYNLAFNI-KNGVQVYYFTYVLGDP-ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM 297 (437)
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcchhheeEeeecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 345555555555555555433 2334455555444433 34577777788999999999999999999999988886666
Q ss_pred HhhHHhhhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-------chhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 91 CLPIPLMTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-------EHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 91 ~~~~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
+++...+.. +.+...+..++.|++ +...+..+++++|..| +++++...|+.+....+ .+++.+.|.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 298 VLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444332 344455555666664 4556778888888865 45678999999988888 8999999988
Q ss_pred hhh
Q psy16666 158 YYC 160 (167)
Q Consensus 158 ~~~ 160 (167)
.+.
T Consensus 378 l~~ 380 (437)
T TIGR00792 378 LGI 380 (437)
T ss_pred HHH
Confidence 764
No 122
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.36 E-value=1.2e-10 Score=88.92 Aligned_cols=148 Identities=7% Similarity=-0.004 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHH-HHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLL-ITVF 88 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~-~~~~ 88 (167)
++.++...+..++....... ...++|.|+++..+.+..+.+.......++..++.++.|+++||+ +||+... ....
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~ 330 (452)
T PRK11273 252 NKLLWYIAIANVFVYLLRYG-ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMT 330 (452)
T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 34445444544444444333 467899999876555555668888888899999999999999999 4554322 2222
Q ss_pred HHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666 89 VTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC 160 (167)
Q Consensus 89 ~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~ 160 (167)
+..++...+.. +.+...+..+..|.. .+.......+..|.+|+++|+++.|+.+....+ ..+|.+.|.+.+.
T Consensus 331 l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~ 410 (452)
T PRK11273 331 LVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 410 (452)
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 22222222211 223333333344432 222233445678999999999999999877666 3479999988764
No 123
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.35 E-value=9.3e-11 Score=90.69 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.+...+...++..+..+. ....+|.+.++..+.++...|++.++.+++..++....+++.+|+++++.+..+.+..+
T Consensus 217 ~~~l~~~l~~~~~~~l~~~a-~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a 295 (524)
T PF05977_consen 217 SPPLRSVLLRSFLFNLFASA-VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFA 295 (524)
T ss_pred chHHHHHHHHHHHHHHhhhH-HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHH
Confidence 34444444444444443333 45668888877766666677999999999999999999999999999988888877776
Q ss_pred hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++...++. +.+...+..++.|++. ......++.+.+..|++.||+++++++..... .+|..+.|.+.+.
T Consensus 296 ~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 296 LALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655554 6666667777778754 55667889999999999999999999877666 8889999988764
No 124
>KOG0255|consensus
Probab=99.35 E-value=9.7e-12 Score=96.34 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFA 123 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~ 123 (167)
.+.....+..+++.++..+|+.++|+++||+|||+++++++++..++....+. +++.+.+.|++.|++ ++.......
T Consensus 115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 34455688899999999999999999999999999999998888776655444 899999999999995 577889999
Q ss_pred HHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhh
Q psy16666 124 YVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYY 159 (167)
Q Consensus 124 ~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~ 159 (167)
+++|+.++++|+.+..+....+.. ..+|+.++++..
T Consensus 195 ~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred hheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999994444444 777777776654
No 125
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.35 E-value=9.1e-11 Score=88.58 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
...++|.|.++.+. +..+.+...+...++..++.+..|++.||+|||+.+..+.....+....... +........++
T Consensus 250 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 250 IFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 35677888887654 4456688888889999999999999999999999988876655544333221 11111122222
Q ss_pred HHH--H-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGV--F-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~--~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+. . .+..+..+.++.|.+|+++|+++.|+.+....+ .++|.+.|++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~ 383 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT 383 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence 232 1 233455667889999999999999998887777 8999999988754
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.35 E-value=1.6e-11 Score=92.67 Aligned_cols=125 Identities=14% Similarity=0.069 Sum_probs=90.9
Q ss_pred HHHHHHhhC---CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHH
Q psy16666 36 IISVLNRTF---PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISI 110 (167)
Q Consensus 36 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 110 (167)
..|.|..+. .+.+..+.+.+.+...+...++.+++|+++||+|+|+.+..+..+..+...... .+.+.+....++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l 324 (420)
T PRK09528 245 QFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLL 324 (420)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445554432 123345668888988999999999999999999999998887666665544443 366666666777
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHH-HHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGL-VSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++.. ...+....++.|..|++.|++..+. ++....+ +++|.+.|++.+.
T Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~ 378 (420)
T PRK09528 325 HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS 378 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 77654 3456677889999999999887665 4555555 8899999998864
No 127
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.35 E-value=2e-10 Score=87.25 Aligned_cols=146 Identities=13% Similarity=0.017 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cc-hHHHHHH---H
Q psy16666 14 SVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GR-KLFLLIT---V 87 (167)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~-r~~~~~~---~ 87 (167)
.++...+..++....... ...++|.|+++..+.+..+.+...+...++..++.+..|+++||+ ++ |+..... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAA-INDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 344444433443433333 466889998665555556678888999999999999999999998 33 3322221 1
Q ss_pred HHHHhhHHhhhH-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 88 FVTCLPIPLMTL-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
....+....... +........+..|+.. +........+.|..|+++|+++.|+.+....+ +++|.+.|++.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~ 399 (434)
T PRK11663 323 LLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI 399 (434)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence 111111111122 2222223333334322 22233456778999999999999999998888 8999999988764
No 128
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.35 E-value=9.2e-11 Score=90.39 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=103.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHH
Q psy16666 8 SGIGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLF 82 (167)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~ 82 (167)
+..++|+...++...+........ ..+.+|.+.++.+.+. .+++.. +...... ++++++|+++||+ |||+.
T Consensus 7 ~~~~~~~~~~~~~l~~~~gl~~~~-~~~~l~~~l~~~g~~~-~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~ 82 (491)
T PRK11010 7 RIFQQPNSAILLILGFASGLPLAL-TSGTLQAWMTVENIDL-KTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG 82 (491)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCH-HHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence 344555666666666666666555 6888999988876555 455765 3333333 6889999999999 98886
Q ss_pred -HHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccch
Q psy16666 83 -LLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSL 153 (167)
Q Consensus 83 -~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i 153 (167)
+..+.+..+++....+. +.+.+.+.+++.+++. ...+...+++.|++|+|+|+++.++......+ .+++.+
T Consensus 83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l 162 (491)
T PRK11010 83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL 162 (491)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444333322 5666777777777754 55568899999999999999999999888777 777777
Q ss_pred hhHhhh
Q psy16666 154 TPFYYY 159 (167)
Q Consensus 154 ~g~l~~ 159 (167)
++++.+
T Consensus 163 ~~~l~~ 168 (491)
T PRK11010 163 ALWLAD 168 (491)
T ss_pred HHHHHh
Confidence 776654
No 129
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.34 E-value=1.9e-12 Score=102.28 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=104.7
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHH------------
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLD------------ 100 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------ 100 (167)
..+.++.+.++++.++. +.|++.+.+.++..++.++.+++.||+|||+.+.++.++.+++.++++.+
T Consensus 52 ~~~~l~~iek~F~lss~-~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTS-SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred HHhhchhhhhhhCCCCC-cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 56667777777776665 55999999999999999999999999999999988877777765554321
Q ss_pred -----------------------------------------HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHH
Q psy16666 101 -----------------------------------------TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAY 138 (167)
Q Consensus 101 -----------------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~ 138 (167)
...++++++++|++. ...+...+++.|.+|+++|+++.
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 234567899999965 67788999999999999999999
Q ss_pred HHHHHHHhh--hhccchhhHhhhh
Q psy16666 139 GLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 139 ~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++.+....+ .+|+++++.+.+.
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999998888 8999999988753
No 130
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-10 Score=84.72 Aligned_cols=143 Identities=16% Similarity=0.068 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
..+....++..+.... ..+.+|.+.+.++.+.. +++++..++..++.+.+++.|++.+|+|+|+-++.++.+++++..
T Consensus 16 v~~t~lFfl~G~~~~l-~diLip~l~~~f~ls~~-~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 16 VLLTSLFFLWGFITCL-NDILIPHLKEVFDLTYF-EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHhhc-chhhHHHHHHHhCccHH-HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3333344444444333 57777877776666664 669999999999999999999999999999999999999999888
Q ss_pred hhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 96 LMTL-----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 96 ~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++.. ++..++.+.++.+.+- ......+.+++.+.|+++..+-+++.+.+.++ ++||.+++.+..+
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 7752 5666666777777764 45678999999999998888889999999888 9999999988764
No 131
>KOG2532|consensus
Probab=99.33 E-value=1.6e-11 Score=93.49 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy16666 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAY 124 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~ 124 (167)
.+-+++.+....++.+++.+.|+++||+|.|+++..+.++.++...+... +.+.+++.|+++|+. +..+|....+
T Consensus 73 ~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i 152 (466)
T KOG2532|consen 73 TEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSI 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhce
Confidence 44599999999999999999999999999999999998888887776654 556778999999985 5688999999
Q ss_pred HhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 125 VADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 125 ~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+++.|+++|++..++......+ +++-+++|.+.+.
T Consensus 153 ~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s 190 (466)
T KOG2532|consen 153 LAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES 190 (466)
T ss_pred eeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999999999998877 6666778877655
No 132
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.32 E-value=1.6e-10 Score=87.25 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH-HHHHHHHHHhh
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFP-DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF-LLITVFVTCLP 93 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~ 93 (167)
+...+..++....... ...++|.++++.+ +.+..+.+.......++..++.+.+|+++||++||+. .........+.
T Consensus 245 ~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSA-INIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence 3333334444444434 5788999998753 4445666888899999999999999999999997664 33333333332
Q ss_pred HHhhh-H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 94 IPLMT-L-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 94 ~~~~~-~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
..... . +....+....+.+++. ...+.......|..|+++|+++.|+.+...++ +++|.+.|.+.+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~ 396 (412)
T TIGR02332 324 WLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT 396 (412)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC
Confidence 22111 1 2222222222222221 12234455567889999999999999999888 89999998887653
No 133
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.32 E-value=2.6e-10 Score=85.69 Aligned_cols=150 Identities=15% Similarity=0.168 Sum_probs=116.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|++...++..++.....+. ...+.+.|+++.++.+....+...+...+..++.-...+++..|+|.|+++.++.+..
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~-~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~ 283 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAA-YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY 283 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 355666666666666666655 6888899999998655556688888888899999999999999999999999998888
Q ss_pred HhhHHhhhH---HHHHHHHH----HHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHH-hh--hhccchhhHhhh
Q psy16666 91 CLPIPLMTL---DTWWFFAM----ISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSET-NQ--YSSPSLTPFYYY 159 (167)
Q Consensus 91 ~~~~~~~~~---~~~~~~~~----~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~--~~gp~i~g~l~~ 159 (167)
++=+.+++. +.+..... ..+.|. ++........++.|..|++.|++++++++... ++ .+|..++|++++
T Consensus 284 ~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~ 363 (400)
T PF03825_consen 284 AVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD 363 (400)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 886655543 22332222 345787 56677899999999999999999999998754 44 999999999987
Q ss_pred hc
Q psy16666 160 CN 161 (167)
Q Consensus 160 ~~ 161 (167)
..
T Consensus 364 ~~ 365 (400)
T PF03825_consen 364 AF 365 (400)
T ss_pred Hh
Confidence 54
No 134
>PTZ00207 hypothetical protein; Provisional
Probab=99.32 E-value=3.3e-10 Score=88.42 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=87.8
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--------HHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--------DTWWFF 105 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--------~~~~~~ 105 (167)
..+.+...++++.+. .+.+++.+.. .......++.|+++||+|+|+++.++.++..++..+.+. +.+.+.
T Consensus 47 sv~s~~L~~~lgls~-~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 47 NLISGAMQARYNLTQ-RDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHHHHhCcCH-HHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 344455556655554 4567777663 344456778999999999999999998877776665543 567778
Q ss_pred HHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHh
Q psy16666 106 AMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFY 157 (167)
Q Consensus 106 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l 157 (167)
+.+++.|++.+ ..+.....+.+++| ++|+++.|+.....++ +++++..+++
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888654 55677778889986 7799999999998888 3455555544
No 135
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.31 E-value=3.2e-10 Score=84.83 Aligned_cols=147 Identities=9% Similarity=-0.007 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
|.++......++....... ...+.+.|.+|.+. +..+++++...... ...++..+.|++.||+|+|+.+..+.....
T Consensus 208 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 285 (390)
T TIGR02718 208 PLAWSLLALALLSAMTAVS-GFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAG 285 (390)
T ss_pred cCHHHHHHHHHHHHHHHHH-HHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4445555555555554444 46677888888654 44566888777654 566778999999999999998887754442
Q ss_pred h-hHHhhhH-------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 92 L-PIPLMTL-------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 92 ~-~~~~~~~-------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+ ....+.. +.+.......+.++. +...+..++...+..++ +++++.++..++..++ .+||.++|.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~ 365 (390)
T TIGR02718 286 SLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD 365 (390)
T ss_pred HHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111111 122222333344443 34456667776676665 8899999999998888 999999999987
Q ss_pred hc
Q psy16666 160 CN 161 (167)
Q Consensus 160 ~~ 161 (167)
..
T Consensus 366 ~~ 367 (390)
T TIGR02718 366 RF 367 (390)
T ss_pred HH
Confidence 53
No 136
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.31 E-value=6.8e-11 Score=86.61 Aligned_cols=131 Identities=22% Similarity=0.399 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhCCCch-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh
Q psy16666 20 VVIFLEFFAWGLLTMPIISVLNRTFPDHT-FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT 98 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (167)
...+...+.... ...++|.|.++..+.+ ..+.+...+...+...++.++.|++.||+++|+..........+....+.
T Consensus 213 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (352)
T PF07690_consen 213 IAFFLFFFVFSG-FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL 291 (352)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHH-hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 333344334434 5778888854444444 46668889999999999999999999999987776666444444333222
Q ss_pred ---H--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhcc
Q psy16666 99 ---L--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSP 151 (167)
Q Consensus 99 ---~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp 151 (167)
. +..+.....++.|++. ...+...+++.|..|+++|+++.|+.+...++ .+||
T Consensus 292 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 292 LLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 2 3455666667778754 46789999999999999999999999988887 5554
No 137
>KOG0254|consensus
Probab=99.30 E-value=1.3e-10 Score=89.98 Aligned_cols=97 Identities=20% Similarity=0.251 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Q psy16666 51 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVAD 127 (167)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 127 (167)
+.+++.+...++..++++++|+++|++|||+.++++.+...++...... +.+.+.++|++.|++. +.......+++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 3489999999999999999999999999999999998888877666554 8899999999999965 455688999999
Q ss_pred cccchhhHHHHHHHHHHHhh
Q psy16666 128 VTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 128 ~~~~~~r~~~~~~~~~~~~~ 147 (167)
..|++.|+...+..+.....
T Consensus 170 iap~~~RG~l~~~~~l~~~~ 189 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITI 189 (513)
T ss_pred cCChhhhHHHHHHHHHHHHH
Confidence 99999999999999888777
No 138
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.30 E-value=1e-10 Score=88.77 Aligned_cols=127 Identities=16% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---H---H------
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---L---D------ 100 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~---~------ 100 (167)
...+.|.+.++.+.+. .+.+.......++..++.++.|+++||+|||+.+..+..+..++...+. . +
T Consensus 303 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 303 IMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred hHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 3556677777766555 5557888888899999999999999999999998887665555444433 1 1
Q ss_pred HHHHHHH-HHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 101 TWWFFAM-ISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 101 ~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+..+.. .++.+..+ +..+....+..|.+|+++|+++.++.+...++ +++|.+.+.+.+.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 22223333 34456677889999999999999999998888 8888888877654
No 139
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.30 E-value=2.8e-10 Score=85.54 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=90.3
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-LWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 110 (167)
..++|.|.++.++.+ .+.++..+...+.......+.+++.| |++.++.+..+..+..++...+.. +.+...+...+
T Consensus 228 ~~~~p~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 306 (400)
T PRK11646 228 MLMLPIMVNDIAGSP-SAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICL 306 (400)
T ss_pred HHhhhhhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 456788888776654 45688877777766666666666665 466666666665555555444332 44444454555
Q ss_pred HHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 111 SGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 111 ~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
.+.+. ...|...+++.|..|+++|++++|+.+...+. .+||.++|++.+..
T Consensus 307 ~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 307 FYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHH
Confidence 66543 45577889999999999999999999998887 89999999998764
No 140
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.28 E-value=4.2e-10 Score=84.58 Aligned_cols=148 Identities=8% Similarity=-0.020 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+++++...+...+....... .....|.+.++..+.+..+.+.......++..++.+..|+++||+++|+.+..+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~ 292 (406)
T PRK15402 214 NRRFVAGALALGLVSLPLLA-WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMV 292 (406)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444443333333222 34456777655444455566877777778888999999999999999998888765554
Q ss_pred hhHHhhhH-------HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 92 LPIPLMTL-------DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 92 ~~~~~~~~-------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
++...+.. +.+++....++.|++.+ ..+..+..... .++++|++..+..+..... .+|+.+++.+.+..
T Consensus 293 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 371 (406)
T PRK15402 293 AGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG 371 (406)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 44333321 34445556667776544 34444444433 3458899999999888777 88888888876543
No 141
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.28 E-value=3.5e-10 Score=88.09 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=95.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISIS 111 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 111 (167)
...++....+.+..+. . .|+.+...+...+..++.|+++|.+|||..++.+.++..++.+..+. +...++.+..+.
T Consensus 64 a~~l~~I~~diG~~~~-~-~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 64 ASILPYINADIGGSDN-W-SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHHHHhcCCCcc-c-hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 3445666677776653 3 78888899999999999999999999999999998888887776554 788888999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 112 GVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
|++.+........++|..|.+.|..+.++.....-. ..+|.++..+
T Consensus 142 GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 142 GVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 997776667777799999999998877766544333 4566665544
No 142
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.27 E-value=2.3e-10 Score=95.91 Aligned_cols=145 Identities=12% Similarity=0.030 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHH-HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFL-MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
+.++...+..++....... ...++|.|..+..+.+.. ..+++.+...++.+++.+++|+++||+++++++.++.++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~ 310 (1146)
T PRK08633 232 RVLWLAIIGLSYFWFISQL-AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLA 310 (1146)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHH
Confidence 3344444434443333333 466778777665555445 67999999999999999999999999999888877766655
Q ss_pred hhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 92 LPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 92 ~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
++...+.. +.+..++..++.|++. ...+...+++.+..|+++|++++|+.+....+ .+++.+++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 311 LSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 5555666667777754 45667889999999999999999999888777 55666665553
No 143
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.27 E-value=2.6e-10 Score=84.20 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHHH-HHHHHHHHhhHHhhhH-----HH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLFL-LITVFVTCLPIPLMTL-----DT 101 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~-~~~~~~~~~~~~~~~~-----~~ 101 (167)
..+.+|.+.++.+.+.. ++++.... .+...+ .+++|+++||+ ||||.+ +.+.+..++....... +.
T Consensus 7 ~~~~~~~~~~~~g~s~~-~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLK-TIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHhHHHHHHHHcCCCHH-HHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 46778889998877765 56877544 455554 89999999998 888864 4454444443322221 34
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 102 WWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 102 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+.+....++.+.. +...++..+++.|++|+|+|+++.++.....++ .++|.+++.+...
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~ 145 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASP 145 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444555554 345578899999999999999999999888888 7788888877643
No 144
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.26 E-value=3.5e-10 Score=84.75 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=98.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFP---DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF 88 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (167)
+|+++...+..+.....+.. .....+.|.++.. +.+....+...+...+...++.+..|++.||+|||+.+.++..
T Consensus 214 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~ 292 (396)
T TIGR00882 214 QRKFWMFVLYVVGVACVYDV-FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGT 292 (396)
T ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 44444444433333333222 2345666665543 2333455888888889999999999999999999999888866
Q ss_pred HHHhhHHhhh--HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHH-HHHHHhh--hhccchhhHhhhh
Q psy16666 89 VTCLPIPLMT--LDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGL-VSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 89 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+.++....+. .+.+.+.+..++.|+... .......+..+..|++.+++..+. .+....+ .++|.++|++.+.
T Consensus 293 l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~ 370 (396)
T TIGR00882 293 IMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS 370 (396)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 6665444433 366666667777776543 334556677888888888777665 4555555 8999999999874
No 145
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.26 E-value=8.7e-10 Score=80.28 Aligned_cols=146 Identities=12% Similarity=0.052 Sum_probs=98.4
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
++.++...+..++....... ...+.+.|+++. .+.+..+.+...+.+..+..++....+++.||+|+|+++.++..+
T Consensus 139 ~~~~~l~~~~~f~yvg~e~~-~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l 217 (310)
T TIGR01272 139 FTHLVLGALGIFVYVGAEVS-AGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL 217 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34444444444444434444 578889999754 355566779999999999999999999999999999988777655
Q ss_pred HHhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 90 TCLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
..+...+... +.........+.|++ +..+|...+...|..|++ .+++.++.. ...+ +++|.+.|.+.+.
T Consensus 218 ~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~-~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 218 AVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILC-LAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHH-HHHhcchHHHHHHHHHHHh
Confidence 5554433322 222222344466664 578888899998888754 455666643 3334 8899989988764
No 146
>KOG2325|consensus
Probab=99.25 E-value=7.2e-11 Score=89.38 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=118.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRT--FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLIT 86 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~ 86 (167)
.+.+.++...+..++..+..+. ..+..-.|.++ .+.... .-|++.+...++..++++..|++..|.++ |+.++.+
T Consensus 31 t~wrsi~l~~~~sfl~~v~~sI-~~~s~wpYl~~lD~~A~~~-ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 31 TNWRSIYLALLNSFLVAVQFSI-YLTSMWPYLQKLDPTATAT-FFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred CchHhHHHHHHHHHHHhhhheE-EEeecchhhhhcCCCCCcc-hhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 3445566666666777777655 45555556666 444454 55999999999999999999999999985 6677777
Q ss_pred HHHHHhhHHhh-hH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 87 VFVTCLPIPLM-TL------DTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 87 ~~~~~~~~~~~-~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
.+..+++..+. +. ..+.++++|++.|++.+......+|+++...+++|.++++....+..+ ++||.++..+
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f 188 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF 188 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence 77777766665 22 467889999999999888899999999999899999999988886666 8999988877
Q ss_pred hhhcccC
Q psy16666 158 YYCNNKG 164 (167)
Q Consensus 158 ~~~~~~~ 164 (167)
.....+|
T Consensus 189 ~~Lg~~G 195 (488)
T KOG2325|consen 189 TPLGEKG 195 (488)
T ss_pred hhhcCCc
Confidence 6665544
No 147
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.24 E-value=3.4e-10 Score=86.03 Aligned_cols=147 Identities=6% Similarity=-0.008 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH---
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV--- 89 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~--- 89 (167)
+.++...+..++....... ...++|.|.++..+.+..+.++......+...++.+.+|+++||+++++....+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYG-VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 3344444444444433323 467889999886666666678888888899999999999999999643322222111
Q ss_pred HHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666 90 TCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~ 160 (167)
..+....+.. +.+......+..|.. .+..........|.+|+++|+++.|+.+..... .+||.+.|.+.+.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~ 408 (438)
T TIGR00712 330 VTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 408 (438)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence 1111111111 223222223333332 122222335678999999999999999877655 5799999988764
No 148
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.24 E-value=2.4e-10 Score=84.51 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=118.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
++++++...++..++..-+... +...-..|.....+.+..+...+.....+..++++..+|++.||+|.|+++..+.+.
T Consensus 249 ~~~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 249 RGRKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred hcccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 3455677777777777666555 466667777744444445668888889999999999999999999999999888666
Q ss_pred HHhhHHh-hh-HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhcccC
Q psy16666 90 TCLPIPL-MT-LDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNKG 164 (167)
Q Consensus 90 ~~~~~~~-~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~~ 164 (167)
..+.... +. .....++++.++.|. .++..+...++..+..|+++-++.+|+++..... ..||...+.+.+..++-
T Consensus 328 ~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~ 407 (438)
T COG2270 328 LSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS 407 (438)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 5554333 22 244445555566666 5778899999999999999999999999998887 99999999888776654
Q ss_pred C
Q psy16666 165 R 165 (167)
Q Consensus 165 ~ 165 (167)
+
T Consensus 408 r 408 (438)
T COG2270 408 R 408 (438)
T ss_pred h
Confidence 4
No 149
>PRK09848 glucuronide transporter; Provisional
Probab=99.24 E-value=8.3e-10 Score=84.13 Aligned_cols=149 Identities=18% Similarity=0.121 Sum_probs=102.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|++....+..++...+... .....|.|.++..+.+....++......++..++.++++++.||+|+|+.+..+..+.
T Consensus 226 ~n~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~ 304 (448)
T PRK09848 226 RNRPLFMLCIGALCVLISTFA-VSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG 304 (448)
T ss_pred CCchHHHHHHHHHHHHHHHHH-HhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 456666666666666555433 3455666777666665555444444446778889999999999999999998887666
Q ss_pred HhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccch-------hhHHHHHHHHHHHhh--hhccchhhH
Q psy16666 91 CLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEH-------ERSLAYGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 91 ~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~--~~gp~i~g~ 156 (167)
.++...+.. +.+......++.|++ +...+...++.+|..|++ +++...|..+....+ .+|+.+.|.
T Consensus 305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444332 445555555666764 355677888888888754 358888888888777 888888888
Q ss_pred hhhh
Q psy16666 157 YYYC 160 (167)
Q Consensus 157 l~~~ 160 (167)
+.+.
T Consensus 385 ~l~~ 388 (448)
T PRK09848 385 ILGL 388 (448)
T ss_pred HHHH
Confidence 7654
No 150
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.24 E-value=4.2e-10 Score=85.13 Aligned_cols=137 Identities=14% Similarity=0.206 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHHHHHHHhhH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLPI 94 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~ 94 (167)
..+....++.+..++. ..|.++.++++..+.+..++|++.+...++..++++++|+++||+|| |+++.++.+...+..
T Consensus 5 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGS-WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3566677888888877 78888888877666666788999999999999999999999999965 777777666555544
Q ss_pred HhhhH--HHHHHHHHHHHHHHHH-HHHHHHHH----HHh----ccccchhhHHHHHHHHHHHhhhhccchhhHh
Q psy16666 95 PLMTL--DTWWFFAMISISGVFA-VTFSVVFA----YVA----DVTEEHERSLAYGLVSSETNQYSSPSLTPFY 157 (167)
Q Consensus 95 ~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~----~~~----~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l 157 (167)
..... +++.++..+++.++.. ...+...+ +.. |..+...|.+..|.. +.++||.++|.+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~l----G~~ig~~l~g~l 153 (418)
T TIGR00889 84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTI----GFIAAMWAVSLL 153 (418)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhH----HHHHHHHHHHHh
Confidence 43333 5666666777666632 33333333 322 333333455555432 115566666654
No 151
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.23 E-value=3.4e-10 Score=84.01 Aligned_cols=98 Identities=17% Similarity=0.145 Sum_probs=75.2
Q ss_pred HHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HH--------HHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q psy16666 60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DT--------WWFFAMISISGVFA-VTFSVVFAYVADV 128 (167)
Q Consensus 60 ~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 128 (167)
.+...+++++.|+++||+|||+++..+.++..++...... +. +.+++.++++|++. ...+...+++.|.
T Consensus 45 ~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~ 124 (394)
T TIGR00883 45 FLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY 124 (394)
T ss_pred HHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence 3444578899999999999999999987777666555443 22 24677788999854 5667888999999
Q ss_pred ccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 129 TEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 129 ~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
.|+++|++..+..+....+ .++|.+++.+
T Consensus 125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 125 APPGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887776 6666665544
No 152
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.22 E-value=1.7e-09 Score=83.43 Aligned_cols=145 Identities=10% Similarity=0.072 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHH-HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhh
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIM-GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLP 93 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 93 (167)
.+..+...++....... ...+.+.|..+..+.+..+.+... ....++..++.+..|+++||+|+|+.+..+..+.++.
T Consensus 224 ~~~~ll~~~l~~~~~~~-~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAF-AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34333333343333333 345566666544455556678876 4566899999999999999999988776654433332
Q ss_pred HHh---hhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 94 IPL---MTL---DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 94 ~~~---~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
... ... +.+.+....++..+. +...+...++..+..+++.+++..++.+...++ .+++.+.|++.+.
T Consensus 303 ~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~ 378 (491)
T PRK11010 303 NAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA 378 (491)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 233333334444443 334456688888999999999999999888777 6677778888764
No 153
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.21 E-value=3.2e-10 Score=85.95 Aligned_cols=149 Identities=18% Similarity=0.285 Sum_probs=112.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
.++|++..++...++...+... .....+.|.++..+.+. ..+.......+...++.+++++++||+|+|+.+..+..+
T Consensus 222 ~~nr~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~ 299 (428)
T PF13347_consen 222 FRNRPFRILLLAFFLQWLAFAL-MNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLL 299 (428)
T ss_pred cccchHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHH
Confidence 4677888888888887777655 56677777777666664 447888888999999999999999999999999998777
Q ss_pred HHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchh-------hHHHHHHHHHHHhh--hhccchhh
Q psy16666 90 TCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE-------RSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 90 ~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
.++....+.. +.+.+++..++.|++ +..+....++++|..+.++ .|...|..+....+ .+++.+.|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 300 AALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 7665554332 667777777888875 4566788999999887432 36666666666666 78888888
Q ss_pred Hhhhh
Q psy16666 156 FYYYC 160 (167)
Q Consensus 156 ~l~~~ 160 (167)
.+.+.
T Consensus 380 ~~l~~ 384 (428)
T PF13347_consen 380 LLLAL 384 (428)
T ss_pred HHHHH
Confidence 77654
No 154
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.20 E-value=2.9e-09 Score=79.52 Aligned_cols=125 Identities=13% Similarity=-0.017 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---HHHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---LDTWWFFAMISI 110 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 110 (167)
..+++.+.++..+.+..+.++..+...++..++.++.|++.||+|+|+.+..+..+..++...+. .+.+...+..++
T Consensus 219 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 298 (382)
T PRK10091 219 FSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFI 298 (382)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44556666654455556779999999999999999999999999999988877665555443322 233333343344
Q ss_pred HHHH-HHHHHHHH-HHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 111 SGVF-AVTFSVVF-AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 111 ~g~~-~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.+.+ .+..++.. ....+..+++.++.+.+ +....+ .+||.++|++.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~Gp~~~G~l~~~ 350 (382)
T PRK10091 299 CCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSAIGAYCGGMMLTL 350 (382)
T ss_pred HHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHHHHHHHhHHHHHc
Confidence 4432 23333333 34455555555655533 444455 8999999998874
No 155
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.20 E-value=1.1e-09 Score=81.51 Aligned_cols=142 Identities=8% Similarity=0.168 Sum_probs=87.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch---HHHHH-H
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK---LFLLI-T 86 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~~~~~-~ 86 (167)
+++.++.+.+..++....... ...++|.|+++.+. +.. .+.......+...++ .++++||..|| +.... .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~-~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~ 263 (368)
T TIGR00903 190 GRKDLWIIGAILGFGVALFDN-LAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAA 263 (368)
T ss_pred cChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHH
Confidence 345566666666666665544 57889999987653 333 355555555544444 57778876543 33222 2
Q ss_pred HHHHHhhHHhhhH--HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 87 VFVTCLPIPLMTL--DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
....++....+.. +.+..+....+.+++ ....+..+++.+|.+|++.|+++.|+.+...++ ..+|.+.+.+.
T Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 264 ALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 3323333323222 333333333444443 345567889999999999999999999998888 68888777665
No 156
>KOG0569|consensus
Probab=99.19 E-value=3.2e-09 Score=80.88 Aligned_cols=96 Identities=22% Similarity=0.218 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy16666 52 NGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISGVFA-VTFSVVFAYV 125 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~-~~~~~~~~~~ 125 (167)
.+.+.+++.++.++|+...+.++||+|||..+.++.+...++..++.. ++..++++|++.|+.. ........++
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl 141 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL 141 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 366778899999999999999999999999988886666555444332 6788899999999865 5667889999
Q ss_pred hccccchhhHHHHHHHHHHHhh
Q psy16666 126 ADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 126 ~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.|..|.+.||....+.+....+
T Consensus 142 ~E~sP~~~RG~~g~~~~~~~~~ 163 (485)
T KOG0569|consen 142 TEISPKNLRGALGTLLQIGVVI 163 (485)
T ss_pred hhcChhhhccHHHHHHHHHHHH
Confidence 9999999999999888877776
No 157
>TIGR00898 2A0119 cation transport protein.
Probab=99.19 E-value=1.9e-09 Score=83.16 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---H-HHHHHHHHHHHHH-HHHHHHHHHHHHhccccc
Q psy16666 57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---D-TWWFFAMISISGV-FAVTFSVVFAYVADVTEE 131 (167)
Q Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 131 (167)
....+...++.+..+++.||+|||+.+..+.++.+++...+.. . .+......++.++ ....++..+.+..|.+|+
T Consensus 362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 441 (505)
T TIGR00898 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 4456777888899999999999999998887766665544432 1 1333333344444 345667888999999999
Q ss_pred hhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 132 HERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 132 ~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
+.|+++.|+.+....+ +++|.+.+
T Consensus 442 ~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 442 VVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 9999999999988877 88888877
No 158
>PRK10133 L-fucose transporter; Provisional
Probab=99.18 E-value=2.2e-09 Score=81.69 Aligned_cols=147 Identities=7% Similarity=-0.018 Sum_probs=97.6
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHH-hhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLN-RTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
+|.++...+..++....... ...+++.|. ++..+.+..+.++......++..++++..|++.||+|+|+++..+..+.
T Consensus 257 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~ 335 (438)
T PRK10133 257 IRHWRWAVLAQFCYVGAQTA-CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34444444444444433332 345667774 5555666677899999999999999999999999999999988775554
Q ss_pred HhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhh
Q psy16666 91 CLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYC 160 (167)
Q Consensus 91 ~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~ 160 (167)
.+....... +....+....+.|++ +..+|..++...|..|++ .+.+.++....... .++|.+.|.+.+.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G~l~~~ 407 (438)
T PRK10133 336 MALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDA 407 (438)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHHHHHHh
Confidence 443333222 112223445667774 567899999999988654 56777766543333 7788888877654
No 159
>PRK10054 putative transporter; Provisional
Probab=99.18 E-value=9.9e-10 Score=82.49 Aligned_cols=151 Identities=7% Similarity=-0.018 Sum_probs=100.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF 88 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (167)
++|+++......++....... .....+.|..+. ...+....+.......+......+..|++.||.++|+.+..+..
T Consensus 204 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 282 (395)
T PRK10054 204 QDKALLWFTCSGFLASFVSGA-FASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL 282 (395)
T ss_pred cCceehHHHHHHHHHHHHHHH-hhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHH
Confidence 345555555555554444333 233444444322 22334455777777777777888899999999999999888866
Q ss_pred HHHhhHHhhh---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhhcc
Q psy16666 89 VTCLPIPLMT---LDTWWFFAMISISGVFAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYCNN 162 (167)
Q Consensus 89 ~~~~~~~~~~---~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~~~ 162 (167)
+..++...+. .+.+.+.+...+.+++.+ ..|...+.+.|..|++.|+++.+..+...-. .+||.++|.+.+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 283 CFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6655544433 244445556667776543 4567788999999999999998876543323 899999999987653
No 160
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.18 E-value=3.3e-09 Score=78.84 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=81.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-------HHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-------DTWWFFA 106 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 106 (167)
..+.|.+.++..+.+..+.+.+.+...++..++.++.|++.||+|+|+.+..+.....++...+.. +.+....
T Consensus 226 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (385)
T TIGR00710 226 FSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIG 305 (385)
T ss_pred HHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 455677776555555567789999999999999999999999999999887775555544333321 1222333
Q ss_pred HHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchh
Q psy16666 107 MISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLT 154 (167)
Q Consensus 107 ~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~ 154 (167)
...+.|++ +...+.......|..| ++|+++.++.+..... ..+|.++
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 306 PMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556664 3456677788888876 5789999988876554 4444433
No 161
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.17 E-value=6.6e-10 Score=93.33 Aligned_cols=146 Identities=10% Similarity=0.057 Sum_probs=103.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
++.++...+..++..+.... ...++|.|.++..+.+..+.+++.+...++..++.+..|+++||.++++.+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~ 302 (1140)
T PRK06814 224 DKRIWLAILGISWFWLVGAV-VLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMG 302 (1140)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHH
Confidence 44555555555555444434 46678999887766666677999999999999999999999988776665444432222
Q ss_pred hhHH--hhh--------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh-
Q psy16666 92 LPIP--LMT--------------------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ- 147 (167)
Q Consensus 92 ~~~~--~~~--------------------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~- 147 (167)
+... .+. .+.+.+.+..++.|++. ...+...+++.+.+|+++||+++|..+....+
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 303 LFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 2111 111 24455566667777754 45668899999999999999999999988777
Q ss_pred -hhccchhhHhh
Q psy16666 148 -YSSPSLTPFYY 158 (167)
Q Consensus 148 -~~gp~i~g~l~ 158 (167)
.+|++++|.+.
T Consensus 383 ~~ig~~~~g~l~ 394 (1140)
T PRK06814 383 MVAGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 78888888775
No 162
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.16 E-value=6.3e-09 Score=78.15 Aligned_cols=147 Identities=12% Similarity=0.020 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHH-HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPII-SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
++|.++...+..++....... ...++ |.+.++.+.+ ..+.+.......++..++..+.+++.||.+++..+......
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~g~s-~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~ 291 (394)
T PRK10213 214 QRPGVMAGMIAIFMSFAGQFA-FFTYIRPVYMNLAGFG-VDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVL 291 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 345555544443343333222 23444 6666655444 45668888999999999999999999996544433333322
Q ss_pred HHhhHHh--hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 90 TCLPIPL--MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
......+ ...+.+......++.|++. ...+..++++.+..| +++++..+......++ .+||.++|.+.+.
T Consensus 292 ~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~ 366 (394)
T PRK10213 292 AVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN 366 (394)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222222 2235566666667778754 455677778888887 4456777766666666 8999999999864
No 163
>PRK09669 putative symporter YagG; Provisional
Probab=99.15 E-value=3.5e-09 Score=80.63 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=95.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++++++.++...++....... .....+.|.+...+.+ +..+.......+...++.+++++++||+|+|+.+..+....
T Consensus 227 ~n~~~~~l~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~ 304 (444)
T PRK09669 227 GNSQWRIMFIFNVVLLTAVVT-RGGATLYYVNYVLLRP-DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAF 304 (444)
T ss_pred CCchHHHHHHHHHHHHHHHHH-HhhhhheeeeeecCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 456666665555555444433 2333333444433333 34355666667888889999999999999999988775544
Q ss_pred HhhHH-hhh---HHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchh-------hHHHHHHHHHHHhh--hhccchhhH
Q psy16666 91 CLPIP-LMT---LDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHE-------RSLAYGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 91 ~~~~~-~~~---~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~--~~gp~i~g~ 156 (167)
.+... .+. .+.+.+.+..++.|++ +...+..+++++|..|.++ .+...+..+.+..+ .+||.++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 305 VILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43222 211 2555566666777775 4566788999999886322 34556777777677 899999998
Q ss_pred hhhhc
Q psy16666 157 YYYCN 161 (167)
Q Consensus 157 l~~~~ 161 (167)
+++..
T Consensus 385 ll~~~ 389 (444)
T PRK09669 385 ILAWV 389 (444)
T ss_pred HHHHc
Confidence 87643
No 164
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.14 E-value=1.3e-09 Score=80.52 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=106.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
.++++.|.+++.++..+-++.. ...++|.|.++..+.+..+++...+.+.+...+..+.+|+++||+|.+|++......
T Consensus 215 ~~~~~~W~lsllY~~tFG~Fvg-fs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~ 293 (417)
T COG2223 215 FSNKDTWLLSLLYFATFGGFVG-FSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVG 293 (417)
T ss_pred hcCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHH
Confidence 4577888888887777766644 588899999888777777878999999999999999999999999999998888666
Q ss_pred HHhhHHhhhH---------HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 90 TCLPIPLMTL---------DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 90 ~~~~~~~~~~---------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
++++...... +....+...+..+.+. ......+.+++.++|+ +-+.+.|+.....++ .+-|..-|..
T Consensus 294 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 294 MALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred HHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHH
Confidence 6665444332 2333333333334433 3445677778888765 568888888888777 4555555555
Q ss_pred hhh
Q psy16666 158 YYC 160 (167)
Q Consensus 158 ~~~ 160 (167)
.+.
T Consensus 373 ~~~ 375 (417)
T COG2223 373 LDL 375 (417)
T ss_pred HHh
Confidence 443
No 165
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.14 E-value=6.3e-09 Score=78.14 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=88.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HHHHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LDTWWFFAMISIS 111 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 111 (167)
...+|.+.++..+.+..+.|+..+...++..++++..+++.||.++|+++..+... .+....+. .+.+......++.
T Consensus 225 ~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 303 (393)
T PRK11195 225 RFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556666666566667789999999999999999999999999988877776433 22222222 2455555556677
Q ss_pred HHHH-HHHHHHHHHHhccccchh-hHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 112 GVFA-VTFSVVFAYVADVTEEHE-RSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 112 g~~~-~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
|++. ...++.++.+.|..|+|. ++++.++.+...++ .++..+.+.+.
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV 354 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7754 345677788888766654 79999999988887 77777776553
No 166
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.13 E-value=5.5e-09 Score=78.91 Aligned_cols=149 Identities=10% Similarity=-0.022 Sum_probs=97.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFP-DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFV 89 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (167)
++|+++..++..++....... ...+++.|.++.. +.+....+...+.......++.+..+++.||+++|+++.++...
T Consensus 230 ~~~~~~~~~l~~f~yvg~e~~-~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~ 308 (410)
T TIGR00885 230 RIRHYREGVIAQFFYVGVQIM-CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAII 308 (410)
T ss_pred hChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 345555555555555444333 4677888887643 23333334455666678889999999999999999988777666
Q ss_pred HHhhHHhhhH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhhh
Q psy16666 90 TCLPIPLMTL-DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYYC 160 (167)
Q Consensus 90 ~~~~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~~ 160 (167)
..+....... +.........+.|+ .+..+|..++...+..+++.+....++.....+.++.|.+.|++.+.
T Consensus 309 ~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 309 GMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 6555444433 22223344445555 56788999999999998776544555544432228999999999874
No 167
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.13 E-value=6.1e-10 Score=83.24 Aligned_cols=150 Identities=19% Similarity=0.323 Sum_probs=90.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH-HHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF-LLITVF 88 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~ 88 (167)
.++++.+......++.++.++. ..|++|.++++..+.+..++|.+.++..+...+.+|+.|.++||.|.||- +.....
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi-~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~ 82 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGI-FLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAI 82 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHH
Confidence 4677888888888888888877 79999999987656666788999999999999999999999999995544 333222
Q ss_pred HHHhhHHhh--hH------HHHH-HHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhH
Q psy16666 89 VTCLPIPLM--TL------DTWW-FFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 89 ~~~~~~~~~--~~------~~~~-~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~ 156 (167)
+.....+.+ .. +.+. .++..+..++ ..+..|..-+++.+.... .+.-.|-.....++ +++..++|.
T Consensus 83 l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~G~ 160 (412)
T PF01306_consen 83 LLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLAGI 160 (412)
T ss_dssp HHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHhhe
Confidence 222222211 11 2111 1111122232 334556666666555422 22333333333334 556677777
Q ss_pred hhhhcc
Q psy16666 157 YYYCNN 162 (167)
Q Consensus 157 l~~~~~ 162 (167)
+.+.++
T Consensus 161 L~~i~p 166 (412)
T PF01306_consen 161 LFNINP 166 (412)
T ss_dssp HHHHHH
T ss_pred eeeeCc
Confidence 665443
No 168
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.13 E-value=3.6e-09 Score=81.27 Aligned_cols=148 Identities=9% Similarity=0.011 Sum_probs=97.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|.++.++...++....... .....+.|.+...+.+ ...+.+.+...+..+++.+++++++||+|+|+.+..+..+.
T Consensus 229 ~n~~~~~ll~~~~~~~~~~~~-~~~~~~y~~~y~~~~~-~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~ 306 (473)
T PRK10429 229 KNDQLSCLLGMALAYNIASNI-INGFAIYYFTYVIGDA-DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFP 306 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HhhheeeEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 556666666666666655433 4555555555554444 34477777777889999999999999999999988776554
Q ss_pred HhhHHhhh------H-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-------hhhHHHHHHHHHHHhh--hhccch
Q psy16666 91 CLPIPLMT------L-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-------HERSLAYGLVSSETNQ--YSSPSL 153 (167)
Q Consensus 91 ~~~~~~~~------~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~--~~gp~i 153 (167)
+++...+. . +.+.+++..++.|+. +...+...++++|..|. +..|...|.......+ .+|+.+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i 386 (473)
T PRK10429 307 VLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF 386 (473)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 43322211 1 344555555666664 45567788899998663 2234466766666666 889999
Q ss_pred hhHhhhh
Q psy16666 154 TPFYYYC 160 (167)
Q Consensus 154 ~g~l~~~ 160 (167)
.|++.+.
T Consensus 387 ~g~~l~~ 393 (473)
T PRK10429 387 IGVVLGL 393 (473)
T ss_pred HHHHHHH
Confidence 9988754
No 169
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.12 E-value=4.3e-09 Score=78.05 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=107.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh--cchHHHHHH-H
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW--GRKLFLLIT-V 87 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--g~r~~~~~~-~ 87 (167)
+||.+|.+.+..++.+..=.. +..+.|.|+.|..+.+...+++..+.+..+...+.+++|+++||. |||...-+. .
T Consensus 250 ~Nk~iW~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~ 328 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFM 328 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHH
Confidence 577888888887777666333 688999999999998888999999999999999999999999996 566554333 3
Q ss_pred HHHHhhHHhhhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhh
Q psy16666 88 FVTCLPIPLMTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYY 158 (167)
Q Consensus 88 ~~~~~~~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~ 158 (167)
+...++...+.. +++...++.+..|+. -+..-.......|..|++--|++.|+...+..+ +.+...-|++.
T Consensus 329 ~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~ 407 (448)
T COG2271 329 LLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA 407 (448)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE
Confidence 333333333322 446666666777764 355567777889999999999999998887776 44444444443
No 170
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.10 E-value=3e-09 Score=78.62 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
++++...+..+........ ...+.|.|.++..+.+..+.+...+...+...++.+++|+++||+|||+.+..+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~ 303 (366)
T TIGR00886 225 RHTWILALLYSVTFGSFLG-VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAM 303 (366)
T ss_pred cchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHH
Confidence 3444444444443333323 466778888776565566778888889999999999999999999998877666444433
Q ss_pred hHHhhh--H----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 93 PIPLMT--L----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 93 ~~~~~~--~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
+...+. . +.+..+....+.++. +...+...+.+.|..| ++++++.|+.+...++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~ 364 (366)
T TIGR00886 304 GAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNL 364 (366)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccC
Confidence 332222 1 233333333333332 3344566777888876 6899999998776543
No 171
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.10 E-value=1.2e-08 Score=75.85 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=70.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH-h--hhH---HHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP-L--MTL---DTWWFFAM 107 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~ 107 (167)
....|.+..+..+.+..+.+...+...+...++.++.|++.||+|||+.+..+.....+... . ... +.+...+.
T Consensus 214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVG 293 (377)
T ss_pred HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44455555554444456779999999999999999999999999999988877554332211 1 111 23333333
Q ss_pred HHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHH
Q psy16666 108 ISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSE 144 (167)
Q Consensus 108 ~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 144 (167)
..+.+. .+...+.....+.|..| ++|+++.+..+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 330 (377)
T PRK11102 294 VAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTL 330 (377)
T ss_pred HHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHH
Confidence 333222 23334455667778765 7889999887654
No 172
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.09 E-value=7e-10 Score=83.66 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=111.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCC----chHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-cchHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPD----HTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-GRKLFLL 84 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~ 84 (167)
++.+.++.+....+...+++.. ....+..|+..... .+..++.-+.+.+..-.-....++|+++||+ |+|+.+.
T Consensus 18 ~~Pr~l~~if~vE~WERFsyYG-mraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~ 96 (498)
T COG3104 18 GQPRGLYLIFFVELWERFSYYG-MRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV 96 (498)
T ss_pred CCCchHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 4567788888889999999866 36666666654444 4444545566666666677889999999995 9999999
Q ss_pred HHHHHHHhhHHhhhHH----HHHHHHHHHHHHHHHHHH-HHHHHHHhccccchh--hHHHHHHHHHHHhh--hhccchhh
Q psy16666 85 ITVFVTCLPIPLMTLD----TWWFFAMISISGVFAVTF-SVVFAYVADVTEEHE--RSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 85 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
.+.++.+++...++.+ ...+.++..+.+++.+.. +...+++.|++|+++ |..++++++...++ .++|.+.+
T Consensus 97 lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~ 176 (498)
T COG3104 97 LGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITG 176 (498)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHH
Confidence 9999888888776643 456666776666766544 688899999998643 67778888888777 88888888
Q ss_pred Hhhhh
Q psy16666 156 FYYYC 160 (167)
Q Consensus 156 ~l~~~ 160 (167)
++.+.
T Consensus 177 ~~~~~ 181 (498)
T COG3104 177 LLAIN 181 (498)
T ss_pred HHHHh
Confidence 77654
No 173
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.08 E-value=5.3e-09 Score=80.42 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch-----H--HHHHHHHHHHhhHHhhhH--HHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK-----L--FLLITVFVTCLPIPLMTL--DTWW 103 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-----~--~~~~~~~~~~~~~~~~~~--~~~~ 103 (167)
...++|.|..+..+.+....+...+...++..++.+++|+++||++|| + .......+..+....+.. +.+.
T Consensus 271 ~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~ 350 (476)
T PLN00028 271 MDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGA 350 (476)
T ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 355678887665555556678898999999999999999999999865 1 222222222222222222 3333
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhh
Q psy16666 104 FFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYY 159 (167)
Q Consensus 104 ~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~ 159 (167)
.....++.++. ....+...++..|.. +++|++..|+.+...+ +|+.+++++..
T Consensus 351 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~--lg~~i~~~l~~ 404 (476)
T PLN00028 351 AIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGN--VGAVLTQLLFF 404 (476)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhcccc--HHHHHHHHHHH
Confidence 33334444442 334445666677765 4689999998755444 46666666654
No 174
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.07 E-value=1.5e-08 Score=77.29 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=85.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
|+++.|.+.+.++..+..+.. ...++|.|.++..... ..........+...+..|++|+++||+|+|+++.++....
T Consensus 250 k~~~~Wllslly~~tFG~fvg-~s~~lp~~~~~~~~~~--~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~ 326 (462)
T PRK15034 250 QRLHLWLLSLLYLATFGSFIG-FSAGFAMLAKTQFPDV--NILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFM 326 (462)
T ss_pred CCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHH
Confidence 466777777777666655533 3557788876643221 1122334456888899999999999999999998886655
Q ss_pred HhhHHh----hhH----HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc---------------------hhhHHHHHH
Q psy16666 91 CLPIPL----MTL----DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE---------------------HERSLAYGL 140 (167)
Q Consensus 91 ~~~~~~----~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~---------------------~~r~~~~~~ 140 (167)
.+.... ... +.+.+....+...+. +..+...+.++++++|+ ++-+.+.|+
T Consensus 327 ~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~ 406 (462)
T PRK15034 327 AIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGF 406 (462)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHH
Confidence 443321 111 233333333222222 22344566666666653 134556666
Q ss_pred HHHHHhh--hhccchhhHhhhh
Q psy16666 141 VSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 141 ~~~~~~~--~~gp~i~g~l~~~ 160 (167)
....... .+-|.+-|...+.
T Consensus 407 v~a~G~~Ggf~~p~~~g~~~~~ 428 (462)
T PRK15034 407 ISAIGAVGGFFIPQAFGMSLNM 428 (462)
T ss_pred HHHHHHcccchhhHHHHHHHHH
Confidence 6665555 5555555555443
No 175
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.07 E-value=9.4e-09 Score=78.78 Aligned_cols=120 Identities=14% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH----HH--HHHHHHH
Q psy16666 35 PIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----DT--WWFFAMI 108 (167)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~ 108 (167)
.+.|.+.++.+.+.. ...+......+...++.+++|+++||+|||++++.+..+.+++...+.. +. .......
T Consensus 292 ~~~p~i~~~~g~~~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~ 370 (479)
T PRK10077 292 YYAPEIFKTLGASTD-IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370 (479)
T ss_pred HHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 345666666554433 3355666677888899999999999999999998887766665544331 11 1222233
Q ss_pred HHHHHH-H-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 109 SISGVF-A-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 109 ~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
++.+.. . ...+..+.+++|.+|+++|+++.|+.+....+ ++++.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP 421 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333332 2 23367889999999999999999998887776 55544443
No 176
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.06 E-value=6.1e-09 Score=78.90 Aligned_cols=125 Identities=14% Similarity=0.211 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchH-HHHHHHHHHHhhHHhhhH--------
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKL-FLLITVFVTCLPIPLMTL-------- 99 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~-~~~~~~~~~~~~~~~~~~-------- 99 (167)
..++++.+..+..+.+..++|.+.+...+...+..|+.|+++|| +|||| .++.+....+++...+..
T Consensus 18 ~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~ 97 (437)
T TIGR00792 18 VSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG 97 (437)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence 56677777776666666678999999999999999999999998 67644 566665555544433322
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 100 DTWWFFAMISISGVFA-VTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
..+++.+..++.+... ....+..++..|.. ++++|++..++.+....+ .+++.+.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234444445555543 34457788889987 468899998887766555 3444443333
No 177
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.05 E-value=3.2e-08 Score=72.26 Aligned_cols=153 Identities=9% Similarity=0.068 Sum_probs=111.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVF 88 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~ 88 (167)
.+++.-|.+.+..-+....+.. ...++|.+..|.+.++. +.|...+...+.+...++....+++|.. +|+.......
T Consensus 205 w~~~~aW~vtLfmGlqS~~~Y~-~~~WLP~ili~~G~sa~-~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~ 282 (395)
T COG2807 205 WRSPLAWQVTLFMGLQSLLYYI-VIGWLPAILIDRGLSAA-EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALL 282 (395)
T ss_pred ccCchhHHHHHHHHhhHHHHHH-HHHHHHHHHHHcCCCHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 4566677777766777777655 69999999998887775 5699999999999999999999999765 5666555555
Q ss_pred HHHhhHHhhhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccc-hhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666 89 VTCLPIPLMTL-DTWWFFAMISISGVF-AVTFSVVFAYVADVTEE-HERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK 163 (167)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~ 163 (167)
+..++...+.. +....+...++.|++ ++.++.....+.+..++ ++-++-.++.+....+ ++||.+.|++.+..++
T Consensus 283 ~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs 362 (395)
T COG2807 283 LMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS 362 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC
Confidence 55555554433 111111224788885 67889888888887764 4445666777777666 9999999999887655
Q ss_pred C
Q psy16666 164 G 164 (167)
Q Consensus 164 ~ 164 (167)
.
T Consensus 363 w 363 (395)
T COG2807 363 W 363 (395)
T ss_pred h
Confidence 4
No 178
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.03 E-value=4.2e-09 Score=81.45 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=70.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----HHHHHHHHHHHHH-HH-HHHHHHHHHHHhcccc
Q psy16666 58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----DTWWFFAMISISG-VF-AVTFSVVFAYVADVTE 130 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~ 130 (167)
...++..++.+.+++++||+|||++++.+..+..+....+.. +.........+.. +. .+..+..+.+.+|.+|
T Consensus 343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p 422 (502)
T TIGR00887 343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP 422 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence 344566678889999999999999988776555544333321 1111111111212 22 2344567788899999
Q ss_pred chhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 131 EHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 131 ~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++.|+++.++.+....+ +++|.+.+.+.+.
T Consensus 423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 99999999999988887 8888888887763
No 179
>KOG2504|consensus
Probab=99.01 E-value=3e-08 Score=76.66 Aligned_cols=148 Identities=14% Similarity=0.260 Sum_probs=110.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc--chHHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG--RKLFLLITVFV 89 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~ 89 (167)
++.++.+.+...+..+++.. ...++|.|.++.+..+ .+...+.++.++...++.+..|+++|+.. ++.+..++.+.
T Consensus 297 ~~~fl~~~~~~~~~~~g~~~-p~~~l~~~~~~~g~~~-~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~ 374 (509)
T KOG2504|consen 297 DPKFLLLALSNLFAYLGFNV-PFVYLPSYAKSLGLSS-NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI 374 (509)
T ss_pred CchHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCh-hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 34444455545555555433 4667888888666555 46689999999999999999999999988 34444555666
Q ss_pred HHhhHHhhhH--HHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 90 TCLPIPLMTL--DTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
.+++....+. +++.+....++.|++.+.+. .....+.|+.+.++-..+.|+...+.++ .+||+++|++.+..
T Consensus 375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t 451 (509)
T KOG2504|consen 375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT 451 (509)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc
Confidence 6665544443 77778888889998765544 5556899999999999999999999888 99999999776544
No 180
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.00 E-value=2.3e-08 Score=76.53 Aligned_cols=146 Identities=10% Similarity=0.100 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHH--------H
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF--------L 83 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~--------~ 83 (167)
++.++...+..+........ ...++|.|+++..+.+..+.++..+...++..++.+..|+++||+++|+. +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~-~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTI-LPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34556566656666555544 57788999887666666777999999999999999999999999764421 1
Q ss_pred HHHHHHH--HhhHHhhhH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 84 LITVFVT--CLPIPLMTL---DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 84 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
..+.... .+....... +.+..++...+.+... ...+.......|..|+ .++.+.++.+....+ .++|.+.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111 111111111 2233333333333332 3334455556677655 799999999988887 77777777
Q ss_pred Hhhh
Q psy16666 156 FYYY 159 (167)
Q Consensus 156 ~l~~ 159 (167)
.+.+
T Consensus 418 ~~~~ 421 (465)
T TIGR00894 418 NILS 421 (465)
T ss_pred eeeC
Confidence 7654
No 181
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.00 E-value=7.2e-08 Score=72.55 Aligned_cols=143 Identities=12% Similarity=0.059 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG-FLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
|.++..++..++....... ...+.+.+..+..+.+..+.+++..... .+..++.+.+|++.||+|+|+.+..+.....
T Consensus 209 ~~~~~~l~~~~l~~~~~~~-~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~ 287 (402)
T PRK11902 209 RGAWALLLLIVLYKLGDAF-AGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA 287 (402)
T ss_pred cCHHHHHHHHHHHHhHHHH-HHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444443443333222 1223333444433444556688775544 4688999999999999999988776654443
Q ss_pred hhHHhh---hH---HHHHHHHHHHH----HHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 92 LPIPLM---TL---DTWWFFAMISI----SGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 92 ~~~~~~---~~---~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
+....+ .. +.+.+.....+ .|+. +...+....++.+..|.++++... ...++ ..++.++|.+.
T Consensus 288 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~G~l~ 363 (402)
T PRK11902 288 VSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYALLS----ALASVGRVYVGPTSGYLV 363 (402)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 332211 11 33444444333 2332 234557777888888876655433 23233 33445788777
Q ss_pred hh
Q psy16666 159 YC 160 (167)
Q Consensus 159 ~~ 160 (167)
+.
T Consensus 364 ~~ 365 (402)
T PRK11902 364 EA 365 (402)
T ss_pred HH
Confidence 54
No 182
>PRK11043 putative transporter; Provisional
Probab=98.99 E-value=7.4e-08 Score=72.33 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=81.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH---hhh----HHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP---LMT----LDTWWFFA 106 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~---~~~----~~~~~~~~ 106 (167)
..+.|.+.++.+. +..+.++......++..++....+++.||+++|+..........+... ... .+.+..++
T Consensus 223 ~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (401)
T PRK11043 223 LTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLI 301 (401)
T ss_pred HHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 5567778777554 445668887888888899999999999999988876554333222211 111 13333334
Q ss_pred HHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 107 MISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 107 ~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
...+.++ .+...+...+...|..| ++|+++.++.+..... ..++.+.|.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~ 356 (401)
T PRK11043 302 PFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS 356 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4445555 34566777777777765 5799999999887555 666666666643
No 183
>KOG2816|consensus
Probab=98.97 E-value=1.4e-08 Score=77.43 Aligned_cols=151 Identities=42% Similarity=0.721 Sum_probs=103.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHH---HHHHHHHHhhCCCchHHHHHHHHHH----HHHHHHhhhhhhhhhhhhhcchHH
Q psy16666 10 IGEPSVYHALVVIFLEFFAWGLLT---MPIISVLNRTFPDHTFLMNGLIMGI----KGFLSFLSAPLIGALSDLWGRKLF 82 (167)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~dr~g~r~~ 82 (167)
.+....+.+....++..++++... .+..+.-............+..... .++..++..+..|.++||+|||..
T Consensus 15 ~~~~~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~ 94 (463)
T KOG2816|consen 15 IRLASMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVV 94 (463)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhh
Confidence 344455556666677777664411 2222222222222222222333333 368889999999999999999999
Q ss_pred HHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 83 LLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+........+..+......|++++..-+.|.....+....++++|...+++|...+|+.+.+... .++|.+++.+.+.
T Consensus 95 L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 95 LLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 99987777776666555445555533344445567789999999999999999999999997777 9999999988765
No 184
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.97 E-value=7.5e-08 Score=72.08 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT 98 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 98 (167)
..+.|.+.++..+.+..+.+...+...++..++.+..+++.||+|||+.+..+..+..++...+.
T Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 44456666554444555678888889999999999999999999999998888666555544433
No 185
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.96 E-value=4.2e-08 Score=73.85 Aligned_cols=113 Identities=20% Similarity=0.472 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-chHHHHHHHHHHHhhH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFVTCLPI 94 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~~~~~~~~~~ 94 (167)
.++....++.++.++. ..|+++.|+++.+ .+..++|.+.+...+..++.++++|.++||.+ +|+.+.+..++.++..
T Consensus 5 ~rLs~~~f~~f~~~G~-~~p~~~~~L~~~G-~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~ 82 (400)
T PF03825_consen 5 FRLSLMYFLYFFAYGA-FLPYLPLYLESRG-FSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL 82 (400)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 4566667777888777 7999999999988 55567899999999999999999999999986 5666666655555443
Q ss_pred HhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Q psy16666 95 PLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTE 130 (167)
Q Consensus 95 ~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~ 130 (167)
..... +++.++...++..+ .....|...++..+..+
T Consensus 83 ~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 83 LLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 33332 66666655555555 34566777777666654
No 186
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.95 E-value=2e-07 Score=68.18 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-H
Q psy16666 22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-D 100 (167)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~ 100 (167)
+.+...+... ..|+.-...++.+..+ .+++.++........+..++.|.++||+|||+..+..+++..+++..-.. +
T Consensus 43 Y~La~~aDWL-QGpY~Y~LY~~yg~~~-~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~ 120 (354)
T PF05631_consen 43 YLLAMAADWL-QGPYLYALYESYGFSE-HQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSN 120 (354)
T ss_pred HHHHHHHHHh-hcchhHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccc
Confidence 3444444434 5666555555555555 56789999999999999999999999999999988888877777665443 7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH-h----ccccchhhHHHHHHHH
Q psy16666 101 TWWFFAMISISGVFA-VTFSVVFAYV-A----DVTEEHERSLAYGLVS 142 (167)
Q Consensus 101 ~~~~~~~~~~~g~~~-~~~~~~~~~~-~----~~~~~~~r~~~~~~~~ 142 (167)
++.+++.|++.|+.. ..+....++. . +-+|++..+...+...
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t 168 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT 168 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 889999999999865 4455555543 2 3345554455554333
No 187
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.95 E-value=5.8e-08 Score=74.67 Aligned_cols=123 Identities=14% Similarity=0.232 Sum_probs=84.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcc-hHHHHHHHHHHHhhHHhhh
Q psy16666 24 LEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGR-KLFLLITVFVTCLPIPLMT 98 (167)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~-r~~~~~~~~~~~~~~~~~~ 98 (167)
...+.+.. ..++++.|..+..+.+...+|.+..+..+...+..|+.|+++| |+|| |+.++.+....+++..++.
T Consensus 17 ~~~~~~~~-~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf 95 (473)
T PRK10429 17 GKDFAIGI-VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF 95 (473)
T ss_pred HHhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH
Confidence 33444434 5778888888877777778899999999999999999999999 5697 5555666665555533322
Q ss_pred H----H----HHHHHHHHHHHHH-HHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh
Q psy16666 99 L----D----TWWFFAMISISGV-FAVTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 99 ~----~----~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~ 147 (167)
. + .+++++..++... .+....+..++..|+. ++++|.+..+......++
T Consensus 96 ~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i 154 (473)
T PRK10429 96 SAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL 154 (473)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1 1 2223333344444 3455668889999999 589999988875544443
No 188
>PRK09669 putative symporter YagG; Provisional
Probab=98.94 E-value=5.8e-08 Score=74.03 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcch-HHHHHHHHHHHhhHHh-hhH-------
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRK-LFLLITVFVTCLPIPL-MTL------- 99 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r-~~~~~~~~~~~~~~~~-~~~------- 99 (167)
...+++.|..+..+.+..++|.+..+..+...+..|+.|+++|| +||| +.++.+....++...+ +..
T Consensus 28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~ 107 (444)
T PRK09669 28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATG 107 (444)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcch
Confidence 45667777777666777788999999999999999999999998 6764 4455554444433322 211
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-cchhhHHHHHHHHHHHhh
Q psy16666 100 DTWWFFAMISISGV-FAVTFSVVFAYVADVT-EEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 100 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~ 147 (167)
..++..+..++.+. .+....+..++.+|+. ++++|.+..+.......+
T Consensus 108 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~ 157 (444)
T PRK09669 108 KIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFI 157 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 12334444444443 4455567889999988 468898887776655555
No 189
>KOG2533|consensus
Probab=98.93 E-value=3e-08 Score=76.27 Aligned_cols=114 Identities=14% Similarity=-0.005 Sum_probs=91.6
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh--hhHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy16666 46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVF-AVTFSVVF 122 (167)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~ 122 (167)
+....+.+.+.+++.++++++.++++.+.||++..+.+....+...+...+ ..++++.+++.|++.|++ ++.+|...
T Consensus 77 ~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~ 156 (495)
T KOG2533|consen 77 KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVV 156 (495)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHH
Confidence 344456699999999999999999999999999666665554444332222 234889999999999996 57889999
Q ss_pred HHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 123 AYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.+++.++.+++|++.++++++..++ ++|.+++..+.+
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 9999999999999999999999888 777777776554
No 190
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.93 E-value=2.4e-11 Score=92.40 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--H---HHHHHHHHHHHHHHH-HHHHHHHHH
Q psy16666 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--L---DTWWFFAMISISGVF-AVTFSVVFA 123 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~g~~-~~~~~~~~~ 123 (167)
.+.++..+...++..+++++.|+++||+|||+.+..+..+..++..+.. . +.+.+.++|++.|++ ++..+....
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457888999999999999999999999999999999777776655543 3 578888999999995 456789999
Q ss_pred HHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 124 YVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 124 ~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
++.|..|+++|++..++.+....+ .++..++
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999988887766 4444443
No 191
>PRK11462 putative transporter; Provisional
Probab=98.92 E-value=2.1e-07 Score=71.44 Aligned_cols=148 Identities=8% Similarity=0.037 Sum_probs=83.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|.++.+....++....... .......|.+...+.+. ..+.+.....++.+++.+++++++||+|+|++...+....
T Consensus 226 ~Nk~~~~l~~~~~~~~~~~~~-~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~ 303 (460)
T PRK11462 226 QNDQWRIVGLLTIFNILAVCV-RGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL 303 (460)
T ss_pred CChHHHHHHHHHHHHHHHHHH-HHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 355555554444444444322 23333333333344333 3356677788888999999999999999998876543332
Q ss_pred Hh-hHHhhh--H-HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccch-----hhHHH--HHHHHHHHhh--hhccchhhH
Q psy16666 91 CL-PIPLMT--L-DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEH-----ERSLA--YGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 91 ~~-~~~~~~--~-~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~-----~r~~~--~~~~~~~~~~--~~gp~i~g~ 156 (167)
.+ ....+. . +.+...+..++.|+.. ...+..++++.|..+.+ +|..+ .+.......+ .+|+.++|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 304 AVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222211 1 2223333445556543 34455677777776622 34333 4444455555 888888888
Q ss_pred hhhh
Q psy16666 157 YYYC 160 (167)
Q Consensus 157 l~~~ 160 (167)
++..
T Consensus 384 iL~~ 387 (460)
T PRK11462 384 MLAY 387 (460)
T ss_pred HHHH
Confidence 8754
No 192
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.92 E-value=2.4e-08 Score=57.55 Aligned_cols=68 Identities=24% Similarity=0.454 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
+-...++.+.+.+. ..|++|.|.++.+.+. .++|.+.++..+...+++|++|.++||+++++.+....
T Consensus 5 lk~~yf~~f~~~g~-~~Pfl~~~~~~~Gl~~-~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~ 72 (77)
T PF12832_consen 5 LKAFYFFYFAALGC-LYPFLPLYLKQLGLSP-SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS 72 (77)
T ss_pred HHHHHHHHHHHHHH-HHhhhhHhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 33445666666666 7999999999866555 57799999999999999999999999999888776653
No 193
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.91 E-value=1.6e-07 Score=70.40 Aligned_cols=124 Identities=10% Similarity=0.047 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH-HHHHhhHHhhh----HHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV-FVTCLPIPLMT----LDTWWFFAMI 108 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~ 108 (167)
....+.+.++..+.+..+.++......++..++....+++.||++++....... ....+...... .+.+......
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPA 306 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445566776644545556688888888888899999999999998443332222 22212111111 1344455555
Q ss_pred HHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 109 SISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 109 ~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
++.+++ +...+...++..|..| ++++++.++.+....+ .+++.+++.+.
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 307 ALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 666664 4467788888888886 5789999998887777 77887777664
No 194
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.90 E-value=2.9e-07 Score=68.95 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHH--HHHHHHHHHhhhhhhhh-hhhhhcchHHHHHHHHH-HH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLI--MGIKGFLSFLSAPLIGA-LSDLWGRKLFLLITVFV-TC 91 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~-l~dr~g~r~~~~~~~~~-~~ 91 (167)
..+...++.+....+. ..|.+|.++++.+.+. .++|+. .+...+..++..|++++ ..||+||||..++...+ ..
T Consensus 4 ~~~~~ly~~~g~~~~~-~~p~lp~~l~~~g~~~-~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~ 81 (390)
T TIGR02718 4 ITLGLLYLSQGIPIGL-AMDALPTLLREDGAPL-TALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVS 81 (390)
T ss_pred HHHHHHHHHHHhHHHH-HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHH
Confidence 3344455666666656 7999999999987555 566886 45668888888888854 79999988886555322 11
Q ss_pred ---hhHHhh--hHH-HHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 92 ---LPIPLM--TLD-TWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 92 ---~~~~~~--~~~-~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.....+ ..+ ..+.+.......+. +...+...++..|..++++++...+.......+ .+|+...+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~ 158 (390)
T TIGR02718 82 ACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG 158 (390)
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 112 22333333333333 345567778888888888888777777666555 555555555543
No 195
>KOG3762|consensus
Probab=98.82 E-value=1.2e-08 Score=77.71 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=112.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--
Q psy16666 22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-- 99 (167)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-- 99 (167)
..+...+.+. +..++-.++++.+..+... |......-.+-++.-++.+++.+|+|+-+++..++.+...=+..++.
T Consensus 380 av~mG~g~~l-v~tFLfWHled~~~~~~Lf-Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~ 457 (618)
T KOG3762|consen 380 AVVMGAGVGL-VFTFLFWHLEDLGGIKTLF-GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ 457 (618)
T ss_pred HHHHHHHHHH-HHHHHHHHHhhcCCcceee-eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc
Confidence 3344444445 6888888899988777655 87777788888899999999999999999999988877775555554
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666 100 DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC 160 (167)
Q Consensus 100 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~ 160 (167)
+.|..+..-+++|+ .+..+.+.-+|+++..||+.|+++.++......- .+|.+|||.+.+.
T Consensus 458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~ 522 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER 522 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence 88888888899999 5678899999999999999999999998875444 9999999988754
No 196
>KOG0569|consensus
Probab=98.81 E-value=2.2e-07 Score=71.00 Aligned_cols=112 Identities=20% Similarity=0.172 Sum_probs=78.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----H---HHHH-
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-----D---TWWF- 104 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----~---~~~~- 104 (167)
..+.....++.+.+ .+++.++....++...+...++..+.||+|||+.++.+..++.+....+.. + .|.-
T Consensus 290 ~~Yst~i~~~aG~~-~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y 368 (485)
T KOG0569|consen 290 FFYSTSIFKTAGFT-PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY 368 (485)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444455555544 456678888899999999999999999999999999997777665554432 1 1222
Q ss_pred --HHHHHHHHH-HH-HHHHHHHHHHhccccchhhHHHHHHHHHHHh
Q psy16666 105 --FAMISISGV-FA-VTFSVVFAYVADVTEEHERSLAYGLVSSETN 146 (167)
Q Consensus 105 --~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 146 (167)
+.+.++..+ ++ |..|..+-+.+|++|++.|..+.++.....-
T Consensus 369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w 414 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW 414 (485)
T ss_pred HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH
Confidence 222233333 23 5567889999999999999999987655433
No 197
>KOG0252|consensus
Probab=98.80 E-value=1.9e-08 Score=75.48 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---------HHHHHHHHHHHHHHH-HH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---------DTWWFFAMISISGVF-AV 116 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-~~ 116 (167)
.++...+.+..+..++.++++++.|++.||+|||++....+++.+++.++... -.+++...|++.|++ ++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGG 160 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGG 160 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccC
Confidence 34445588889999999999999999999999999998887766665544332 235677788999996 67
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 117 TFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 117 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
-+|...+..+|...++.||+-.+.....++.
T Consensus 161 DYPlSAtI~SE~an~~~RGa~iaavFa~Qg~ 191 (538)
T KOG0252|consen 161 DYPLSATIMSESANKKTRGAFIAAVFAMQGF 191 (538)
T ss_pred CCcchHHHhhhhhhhccccceeEEEEEecch
Confidence 8899999999999999999998887776666
No 198
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.73 E-value=3.5e-06 Score=63.40 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=106.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH---TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITV 87 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (167)
+.|++|.+.+........+.. .....|.|......+ +....|.+.+...+...+.-.+..++.+|+|.|+.++++.
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~v-fdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag 296 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDV-FDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAG 296 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHH
Confidence 455666555444333333323 344567676655433 3345688999999999999999999999999999999997
Q ss_pred HHHHhhHHhhh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHH-HHHhh--hhccchhhHhhhh
Q psy16666 88 FVTCLPIPLMT--LDTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVS-SETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 88 ~~~~~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~--~~gp~i~g~l~~~ 160 (167)
.+..+=+...+ .+.+.+.+...+.++ ..........|+++.+|+|..++...+.. ...++ .+.+.++|.+++.
T Consensus 297 ~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~ 375 (412)
T PF01306_consen 297 VIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR 375 (412)
T ss_dssp HHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh
Confidence 77777655544 478888888899998 45667789999999999999888888753 44555 7778888888764
No 199
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.72 E-value=2.8e-06 Score=60.23 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh--HH--HHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTF-LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT--LD--TWWFFAM 107 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~--~~--~~~~~~~ 107 (167)
..+..+.+..+...... ...++..+...+...++.++.|+++||+|||+.+..+......+..... .+ .+.+...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (338)
T COG0477 21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLIL 100 (338)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 45667777776665553 3458888999999999999999999999999877777543222222221 13 5677777
Q ss_pred HHHHHHHH-HHHHHHHHHHhccccc-hhhHHHHHHHHHH-Hhh--hhccchhhHhhhh
Q psy16666 108 ISISGVFA-VTFSVVFAYVADVTEE-HERSLAYGLVSSE-TNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 108 ~~~~g~~~-~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~-~~~--~~gp~i~g~l~~~ 160 (167)
+...|+.. ...+...+++.|..|+ ++|+...+..... ... .++|.+++.+...
T Consensus 101 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 101 RLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788754 5677899999999987 6788888887773 444 7777777666543
No 200
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.70 E-value=8.6e-07 Score=67.43 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=101.3
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
+||++...++...+...+... .......|.+...+.++.+..........+..++.+++.++.+|+|+|++...+.++.
T Consensus 234 ~Nrp~~~~l~~~l~~~~~~~i-~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~ 312 (467)
T COG2211 234 KNRPLLLLLLMNLLLFIAFNI-RGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLL 312 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHH
Confidence 567777777766666666544 5666677777766666666667777777778888999999999999999999998877
Q ss_pred HhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchh-----h--HHHHHHHHHHHhh--hhccchhhH
Q psy16666 91 CLPIPLMTL----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHE-----R--SLAYGLVSSETNQ--YSSPSLTPF 156 (167)
Q Consensus 91 ~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-----r--~~~~~~~~~~~~~--~~gp~i~g~ 156 (167)
+++...+.+ +.+..++..++.+++. ...+..+++++|..+-++ | |...+.+..+.=. +++..+.|+
T Consensus 313 ~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 313 AVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655443 4555566667777754 566788889888876432 2 2333333333333 666666676
Q ss_pred hhhh
Q psy16666 157 YYYC 160 (167)
Q Consensus 157 l~~~ 160 (167)
++..
T Consensus 393 ~L~~ 396 (467)
T COG2211 393 ILGA 396 (467)
T ss_pred HHHH
Confidence 6654
No 201
>KOG0253|consensus
Probab=98.70 E-value=1.8e-07 Score=68.83 Aligned_cols=97 Identities=19% Similarity=0.282 Sum_probs=72.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhh
Q psy16666 58 IKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHER 134 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r 134 (167)
...+..+.|.++.+++.||+|||+.+..++++..+..+.... +........+..-+ ..+.+...+.|.+|.+|+..|
T Consensus 389 itslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavR 468 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVR 468 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhh
Confidence 345778899999999999999999999998877776554432 22222222222222 345667788999999999999
Q ss_pred HHHHHHHHHHHhh--hhccchh
Q psy16666 135 SLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 135 ~~~~~~~~~~~~~--~~gp~i~ 154 (167)
+++.|....+..+ ++.|.++
T Consensus 469 atgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 469 ATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred hcchhhhhhHHhhhhhhhhHHH
Confidence 9999999998888 7888776
No 202
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.69 E-value=8.6e-07 Score=68.35 Aligned_cols=138 Identities=7% Similarity=0.104 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhCCCchH----HHHHHHHHHHHHHHHhhhhhhhh----hhhh-hcchHHH--HHH
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTF----LMNGLIMGIKGFLSFLSAPLIGA----LSDL-WGRKLFL--LIT 86 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~----l~dr-~g~r~~~--~~~ 86 (167)
+++...+....+.. ..+.++.+.++..+.+. ...+++.+...+..++.+|+..+ +.|| .+.+... .++
T Consensus 277 l~~~~~~~~~~~~Q-~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 277 LFLEAVVFWVLYAQ-MPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHH-hhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 33333444444444 35556776655322211 11367778888888888877554 4554 2223333 555
Q ss_pred HHHHHhhHHhhh-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccc
Q psy16666 87 VFVTCLPIPLMT-----------LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPS 152 (167)
Q Consensus 87 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~ 152 (167)
.++.+++..... .+.++++...++.+++. ...|..++++.|..|++.|++++|++.....+ .+++.
T Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~ 435 (475)
T TIGR00924 356 MLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY 435 (475)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555544432 37888888889999876 56789999999999999999999999877776 44444
Q ss_pred hhhH
Q psy16666 153 LTPF 156 (167)
Q Consensus 153 i~g~ 156 (167)
+...
T Consensus 436 ~~~~ 439 (475)
T TIGR00924 436 LATF 439 (475)
T ss_pred HHHH
Confidence 4443
No 203
>PRK11462 putative transporter; Provisional
Probab=98.65 E-value=2.9e-06 Score=65.18 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=88.0
Q ss_pred HHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHH-HHHHHHHHHhhHHhhh-
Q psy16666 25 EFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIPLMT- 98 (167)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~~~~- 98 (167)
....+.. ...++..|..+..+.+...+|.+..+.-+...+..|+.|+++|| +||||. ++++....+++..++.
T Consensus 21 ~~~~~~~-~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~ 99 (460)
T PRK11462 21 SHIIFDN-VMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS 99 (460)
T ss_pred hhHHHHH-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh
Confidence 3344334 45667777777777777788999999999999999999999996 687654 4455444444433322
Q ss_pred H---H----HHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 99 L---D----TWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 99 ~---~----~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
. + ..++.+..++... ......+..++.+|+.+ +|+|.+..++.....++ .+++.+...+
T Consensus 100 ~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~pl 169 (460)
T PRK11462 100 TPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPL 169 (460)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 2233333344444 44555688899999988 78999999987776665 4554444333
No 204
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.7e-06 Score=64.17 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=103.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|.++...+..|+..... ..+..+++.|..+..+.+.++.....+.+..+.++|.....++..|+...+.+.+.....
T Consensus 234 ~~~~~~~gvl~~FlYVG~E-va~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ 312 (422)
T COG0738 234 QNKHLRLGVLAIFLYVGAE-VAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIA 312 (422)
T ss_pred hChHHHHHHHHHHHHHhHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4555666666666555554 447889999999977777788899999999999999999999999999888887775555
Q ss_pred HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh-hhccchhhHhhhhcc
Q psy16666 91 CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ-YSSPSLTPFYYYCNN 162 (167)
Q Consensus 91 ~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~gp~i~g~l~~~~~ 162 (167)
.+.+..... +.+. +.+..+.|. .+..+|+..+...+..|++ -..+.++.-+..-- ++-|.+-|++.+..+
T Consensus 313 ill~~~~~l~~g~v~-~~~l~~ig~F~simfPTIfslal~~l~~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 313 ILLLLAVALIGGVVA-LYALFLIGLFNSIMFPTIFSLALKNLGEH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred HHHHHHHHHhcChHH-HHHHHHHHHHhHHHHHHHHHHHHhccCcc-ccccceeeeeheecchHHHHHHHHHHHhhh
Confidence 444333332 4333 333445555 5678999999999999843 33333333222222 778888888876543
No 205
>PRK09848 glucuronide transporter; Provisional
Probab=98.61 E-value=2.7e-06 Score=64.99 Aligned_cols=119 Identities=8% Similarity=0.052 Sum_probs=74.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh----cchHHH-HHHHHHHHh-hHHh
Q psy16666 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW----GRKLFL-LITVFVTCL-PIPL 96 (167)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----g~r~~~-~~~~~~~~~-~~~~ 96 (167)
+........ ..++++.|+++..+.+..++|.+.....+...+..|+.|+++||. |||+.. ..+.+...+ ....
T Consensus 18 ~~~~~~~~~-~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~ 96 (448)
T PRK09848 18 VANNFAFAM-GALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLV 96 (448)
T ss_pred HHhHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHH
Confidence 344444433 567777788887666777889999999999999999999999996 666644 444332222 2222
Q ss_pred hhH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc-chhhHHHHHHHH
Q psy16666 97 MTL--------DTWWFFAMISISGVF-AVTFSVVFAYVADVTE-EHERSLAYGLVS 142 (167)
Q Consensus 97 ~~~--------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~~r~~~~~~~~ 142 (167)
+.. ..+.......+.+.+ +...++..++..|..+ +++|.+..+.-.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~ 152 (448)
T PRK09848 97 FWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG 152 (448)
T ss_pred HhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH
Confidence 211 112223333444543 3445567777777665 467887766554
No 206
>KOG2532|consensus
Probab=98.57 E-value=1.9e-06 Score=66.14 Aligned_cols=147 Identities=11% Similarity=0.143 Sum_probs=101.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch--------HH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK--------LF 82 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r--------~~ 82 (167)
+++.+|.+.+..+....+... ...++|.|+++..+.+..+.|+..++..+...+...++|+++||.-+| +.
T Consensus 256 ts~~vwai~~~~f~~~~~~~~-l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rki 334 (466)
T KOG2532|consen 256 TSPPVWAIWISAFGGNWGFYL-LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKI 334 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHH
Confidence 456778888888888888766 699999999999999999999999999999999999999999987552 11
Q ss_pred -HHHHHHHHHhhHHhhhH----HHHHHHHHH-HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 83 -LLITVFVTCLPIPLMTL----DTWWFFAMI-SISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 83 -~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
-.++....++.+..+.. +.+..+++. +..++.+...+-...-..|.. |++-+..+|+.+....+ .++|.+.
T Consensus 335 fn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~v 413 (466)
T KOG2532|consen 335 FNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLV 413 (466)
T ss_pred HHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 22234444444444433 222222222 222322222233333333434 56679999999998888 8999999
Q ss_pred hHhhh
Q psy16666 155 PFYYY 159 (167)
Q Consensus 155 g~l~~ 159 (167)
|.+..
T Consensus 414 g~~~~ 418 (466)
T KOG2532|consen 414 GIIVT 418 (466)
T ss_pred eeEeC
Confidence 98875
No 207
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.57 E-value=1.5e-07 Score=72.32 Aligned_cols=117 Identities=13% Similarity=0.061 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh------------HHHHHHHHHHHHHH
Q psy16666 45 PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT------------LDTWWFFAMISISG 112 (167)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g 112 (167)
.+.+..+.|.......++.+++....+++.+|++.|+++.++.++.+++..... .+.+......++.+
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~ 362 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAE 362 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHH
Confidence 444556779999999999999999999999999999999988776666443321 01222333445666
Q ss_pred HH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 113 VF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 113 ~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
+. +..+.+...++++..|++++++.+++.++..++ .+++.++|.+.+.-
T Consensus 363 ~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 363 VLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred HHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 64 345567799999999999999999999999988 89999999887653
No 208
>KOG2504|consensus
Probab=98.56 E-value=6.8e-07 Score=69.28 Aligned_cols=121 Identities=20% Similarity=0.301 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHH-HHHH
Q psy16666 36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMI-SISG 112 (167)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~g 112 (167)
+.+.+.++++..+.+ ++++.++......+..|+.+.+.||+|.|.+.+.+.++..+++.+-.+ +.|.+++.. ++.|
T Consensus 68 ~~~~~~~~f~~s~~~-~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G 146 (509)
T KOG2504|consen 68 LFEELMDYFGSSSSQ-IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGG 146 (509)
T ss_pred hHHHHHHHhCCCccH-HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 456666777766654 699999999999999999999999999999999998888887776544 777776655 6777
Q ss_pred HHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 113 VFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 113 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
++. ..+.+....+..++ +++|+.+.|+.....++ .+-|.+.-.+.
T Consensus 147 ~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 147 LGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred ccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 754 45557777777766 56799999998887777 33344444443
No 209
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.55 E-value=2.8e-06 Score=65.45 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-----chHHHHHHHHHH-H
Q psy16666 19 LVVIFLEFFAWGLLTMPIISVLNRT-FPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLITVFVT-C 91 (167)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~~~~~-~ 91 (167)
...++..... +. ....++.++++ .+.+. .+++...+...+...+- +++|.++||++ ||+.+.++.++. .
T Consensus 32 ~~~y~~qGl~-~l-~~~~~~~~l~~~lg~s~-~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~ 107 (468)
T TIGR00788 32 LQVLFVKGIA-GL-MRLPLSPMLTDDLGLDG-ARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSA 107 (468)
T ss_pred HHHHHHhhHH-HH-hhhhhhHHHHHhcCCCH-HHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 3345555555 44 34445555554 45555 56677888888888885 55999999997 777777765444 2
Q ss_pred hhHHhhhH--H-HHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHH---HHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL--D-TWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYG---LVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+....+.. + .....+..++.+++. .......+++.|..+ |++....+ ......++ .+|+.++|.+.+.
T Consensus 108 ~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~ 184 (468)
T TIGR00788 108 ILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK 184 (468)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333332 2 223333455666654 445688999999988 44444332 33333223 7788888877654
No 210
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.54 E-value=5.5e-07 Score=68.38 Aligned_cols=125 Identities=20% Similarity=0.279 Sum_probs=83.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh----hhcchHHH-HHHHHHHHhhHHhhhH------H--
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD----LWGRKLFL-LITVFVTCLPIPLMTL------D-- 100 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~-~~~~~~~~~~~~~~~~------~-- 100 (167)
..+++.|..+..+.+...+|.+..+..+...+..|+.|.++| |+||||.. +.+....+++..++.. +
T Consensus 21 ~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 21 SSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 445566666665666677899999999999999999999999 79977654 4555555554443321 1
Q ss_pred --HHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 101 --TWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 101 --~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
..+..+..++..+ .+....+..++..|+.+ +|+|.+..+..+....+ .+...+.+.+.
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1222333333344 34455688999999998 57899988887766555 33444444444
No 211
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.52 E-value=2.7e-05 Score=51.03 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=76.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-HHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhh
Q psy16666 57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-LDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHER 134 (167)
Q Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r 134 (167)
++......+.+++.+.+.+++|.|+.++++.+...+....+. .+.+.++.+.++.|++. ..+.....++.+..++++|
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~ 123 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI 123 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence 344455667777788889999999999999777776544433 36677788889999865 5667788899999999999
Q ss_pred HHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 135 SLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 135 ~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
++..++.....+. ++|.++.-.+.+
T Consensus 124 ~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987777666 555555544443
No 212
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.51 E-value=3e-06 Score=59.74 Aligned_cols=112 Identities=14% Similarity=0.125 Sum_probs=77.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---------HHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---------DTWWF 104 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---------~~~~~ 104 (167)
.+.+..-+++..+.+..+...+.....++..+ .++.|.+.||+|++.++.++.....++...+.. +.|.+
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 44444445555556666778888888888876 488899999999999999998877777665442 34445
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 105 FAMISISGVFAVT-FSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 105 ~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.+..++.+.+... .........+.+| ++||++.|+.....++
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GL 142 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGL 142 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHh
Confidence 4444554444333 3444455557776 5799999988777766
No 213
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.50 E-value=1.1e-05 Score=60.14 Aligned_cols=147 Identities=17% Similarity=0.156 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-hhcchHHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-LWGRKLFLLITVFVTC 91 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~g~r~~~~~~~~~~~ 91 (167)
++........++..+++.. .-..+=+|-.+..+.+..+..-+......+..++-...|++.. |.++|+...+++..++
T Consensus 208 ~~a~~f~~fl~l~t~a~~~-QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~ 286 (403)
T PF03209_consen 208 PQARRFFVFLFLGTLAFFM-QDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA 286 (403)
T ss_pred CChhHHHHHHHHHHHHHHh-hHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3344444445555555433 5556666666666777777788888899999999988898876 6778888778877776
Q ss_pred hhHHhhhH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 92 LPIPLMTL-----DTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 92 ~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
++...... +.+.+-...++.|++++.+. ..-+...|..++++.+..+|.....+.. .+|..++|.+.+.
T Consensus 287 ~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 287 LAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554432 66777788899999876655 6778889999999999999999999888 8888899988764
No 214
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.45 E-value=4e-05 Score=58.10 Aligned_cols=148 Identities=7% Similarity=-0.006 Sum_probs=79.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++|.++...+...+....... .....|.+.++..+.+..+.++.......+..+++...+++.+|..+++.........
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~-~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 294 (413)
T PRK15403 216 RNRLFLTGAATLSLSYIPMMS-WVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQ 294 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 344555554444444444322 3556788888876666677788877777888888888888765444433322211111
Q ss_pred HhhHHh-------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 91 CLPIPL-------MTLDTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 91 ~~~~~~-------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
.++... ...+.+...+..++.+++. ...+...+..-+ -.+..++++.+..+..... ..++..++++.+.
T Consensus 295 ~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 295 LVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111111 1112222344555555543 344544432221 1223468888877776555 6777777776543
No 215
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.44 E-value=2.6e-05 Score=57.36 Aligned_cols=127 Identities=15% Similarity=0.125 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISIS 111 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 111 (167)
.-|.++...++.+.+.. .+|++.+...++....+++..+++.|+|.++.+..++++..++..+=.. +.+.++....+.
T Consensus 31 vgPLL~~Ir~~~gls~s-~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~ 109 (395)
T COG2807 31 VGPLLDEIRQDLGLSFS-VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLA 109 (395)
T ss_pred hhhhHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 46777778788777775 5699999999999999999999999999999999998887777666443 566677777888
Q ss_pred HHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 112 GVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 112 g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
|.+- ..+...++.+-+.+|++ -+..+++|....++ ++++.+.-.+.+..
T Consensus 110 G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~ 161 (395)
T COG2807 110 GAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS 161 (395)
T ss_pred HhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 8754 46678899999999755 68999999988887 77777666665544
No 216
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.43 E-value=1.6e-05 Score=61.76 Aligned_cols=104 Identities=12% Similarity=0.174 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhhhhh----hhhhhhhcchHHHHHHHHHHHhhHHhhhH-----------HHHHHHHHHHHHHHHH-H
Q psy16666 53 GLIMGIKGFLSFLSAPLI----GALSDLWGRKLFLLITVFVTCLPIPLMTL-----------DTWWFFAMISISGVFA-V 116 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~----g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~-~ 116 (167)
++..+...+...+..++. +++.||.+.++.+.+++++.+++...... +.++.+...++.+++. .
T Consensus 319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 455566666666666665 66666776667778887777777665432 2457777888999876 5
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhh
Q psy16666 117 TFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYY 158 (167)
Q Consensus 117 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~ 158 (167)
..|...+++.+..|++.|++.+|........ |+.++|.+.
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~--g~~~~g~~~ 438 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAG--AALIAGYVA 438 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 6789999999999999999999977655544 555555554
No 217
>KOG2615|consensus
Probab=98.36 E-value=1.2e-05 Score=59.47 Aligned_cols=118 Identities=11% Similarity=0.170 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc--chHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHH
Q psy16666 46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG--RKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSV 120 (167)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~ 120 (167)
+.++.+.|-+.+..++...+.+....+..||.. -+-.+..+..++.-....... ....+..+..+..+.+ ...+.
T Consensus 293 g~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~ 372 (451)
T KOG2615|consen 293 GYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTC 372 (451)
T ss_pred CCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHH
Confidence 344456699999999999999999999999887 565666555544444444433 4445555566666644 45678
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhccc
Q psy16666 121 VFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCNNK 163 (167)
Q Consensus 121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~~~ 163 (167)
...++....|+++||+.+|+..+...+ ++||+++|.+..|...
T Consensus 373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~ 417 (451)
T KOG2615|consen 373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG 417 (451)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence 889999999999999999999998888 9999999988776543
No 218
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.34 E-value=3.7e-05 Score=58.71 Aligned_cols=126 Identities=16% Similarity=0.207 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHH-HHHHHHHHHhhHH
Q psy16666 21 VIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLF-LLITVFVTCLPIP 95 (167)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~-~~~~~~~~~~~~~ 95 (167)
..+........ ...++..|..+..+.+...+|.++.+.-+..++..|+.|.+.|| +||+|. ++++.+-.++...
T Consensus 20 gd~~~~~~~~~-~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~ 98 (467)
T COG2211 20 GDFASNFAFGI-VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAV 98 (467)
T ss_pred hhhHHHHHHHH-HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHH
Confidence 34444444444 57788888888888888888999999999999999999999996 675554 4555444444333
Q ss_pred -hhhH-------HHHHHHHHHHHHHH-HHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHhh
Q psy16666 96 -LMTL-------DTWWFFAMISISGV-FAVTFSVVFAYVADVTE-EHERSLAYGLVSSETNQ 147 (167)
Q Consensus 96 -~~~~-------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~ 147 (167)
.+.. +.....+...+.+. .+..+.+..++.+|+.+ +++|.+..++-....++
T Consensus 99 l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~ 160 (467)
T COG2211 99 LLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASL 160 (467)
T ss_pred HHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 3321 22334444456665 45566688899999887 78899999887766555
No 219
>KOG0254|consensus
Probab=98.33 E-value=7.7e-06 Score=63.70 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH
Q psy16666 20 VVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL 99 (167)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 99 (167)
+..+....+... ...+.+.+.++.+..+.. ........+...++..+...+.||+|||+.++.+.....++..+++.
T Consensus 302 l~~fqq~tG~~~-~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~ 378 (513)
T KOG0254|consen 302 LQLFQQLTGINY-VFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAV 378 (513)
T ss_pred HHHHHHHhCCce-EEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Confidence 333444433333 466677777777766542 33445556777777777899999999999999997777666555442
Q ss_pred -----H---------HHHHHHHH-HHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 100 -----D---------TWWFFAMI-SISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 100 -----~---------~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
. .+..+... +....+ .+..+..+.+.+|.+|.+.|+++.++.......
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~ 442 (513)
T KOG0254|consen 379 VGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL 442 (513)
T ss_pred HHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence 1 11222222 222222 345567778999999999999999887665444
No 220
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.30 E-value=2.1e-05 Score=61.02 Aligned_cols=103 Identities=11% Similarity=0.201 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchH-------HHHHHHHHHHhhHHh-------hh-----HHHHHHHHHHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKL-------FLLITVFVTCLPIPL-------MT-----LDTWWFFAMISISGV 113 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-------~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~~~~~g~ 113 (167)
..+.+...+...+..|+.+++.||.++|+ .+.++.++.+++... .. .+.+++....++.|+
T Consensus 312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~ 391 (489)
T PRK10207 312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL 391 (489)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 34445556677788899999999999886 255554544444321 11 146777777788888
Q ss_pred HHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 114 FAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
+.. ..++..+++.+..|++.++.++|+.+...++ .+|..++.
T Consensus 392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 764 5678899999999999999999999888777 44444443
No 221
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.26 E-value=9.6e-05 Score=57.12 Aligned_cols=85 Identities=26% Similarity=0.490 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHHhhhH---HHHHHHHHH-HHHHH-HHHHHHHHHH
Q psy16666 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIPLMTL---DTWWFFAMI-SISGV-FAVTFSVVFA 123 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~-~~~g~-~~~~~~~~~~ 123 (167)
...++..++..+...+..|..|.++|+-++||.++.. ..+..++...+.. +.+...... ++.-. .+......++
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna 149 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA 149 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788899999999999999999999966655544 3444333333332 333333333 33333 3456678899
Q ss_pred HHhccccchhh
Q psy16666 124 YVADVTEEHER 134 (167)
Q Consensus 124 ~~~~~~~~~~r 134 (167)
+++|+.+++++
T Consensus 150 ~LP~la~~~~~ 160 (477)
T PF11700_consen 150 YLPDLARPEPR 160 (477)
T ss_pred HhHhhcCCChh
Confidence 99999998888
No 222
>KOG0637|consensus
Probab=98.23 E-value=5.8e-06 Score=62.33 Aligned_cols=139 Identities=16% Similarity=0.171 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHHHHHH-HHH
Q psy16666 15 VYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLFLLIT-VFV 89 (167)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~-~~~ 89 (167)
+..+....+-..+++.. -..+.++|.++.+.... ..+.+..+.-+...+.+|..|..+|| +||||..+.. ...
T Consensus 34 li~v~~ia~Gvqf~wA~-elsy~tPyl~~lGvphk-~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 34 LISVASIAAGVQFGWAL-ELSYLTPYLQSLGVPHK-WSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHH-HhccccHHHHHcCCCcc-cccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 33333344444555544 57788999998887775 44888888889999999999999995 7888877665 334
Q ss_pred HHhhHHhhhH--H----------H--HHHHHHHHHHHH------HHHHHHHHHHHHhccccchhhHH-HHHHHHHHHhh-
Q psy16666 90 TCLPIPLMTL--D----------T--WWFFAMISISGV------FAVTFSVVFAYVADVTEEHERSL-AYGLVSSETNQ- 147 (167)
Q Consensus 90 ~~~~~~~~~~--~----------~--~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~- 147 (167)
..++..++.+ + . ...-+...+.|+ ......+..+++.|+..++++.+ +++.+.....+
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 4444443321 1 1 112222233332 23566799999999999888877 88887777776
Q ss_pred -hhccchhh
Q psy16666 148 -YSSPSLTP 155 (167)
Q Consensus 148 -~~gp~i~g 155 (167)
.+|-..++
T Consensus 192 nvLGY~~g~ 200 (498)
T KOG0637|consen 192 NVLGYALGS 200 (498)
T ss_pred ceeeeeccc
Confidence 55555554
No 223
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.14 E-value=0.00035 Score=53.98 Aligned_cols=147 Identities=14% Similarity=0.145 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHh-hCCC-c-----hHHH----HHHHHHHHHHHHHhhhhhhhhhhhhhcc-h
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNR-TFPD-H-----TFLM----NGLIMGIKGFLSFLSAPLIGALSDLWGR-K 80 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~~~~----~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r 80 (167)
+..+.+++..++..+++.. ...+...+.. +..+ . ..++ ..+....+.+...+.+...-++.+|+|+ |
T Consensus 258 ~~m~~l~~vqffsW~a~f~-~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k 336 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFP-FILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGK 336 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 4567788888888887633 2333333432 2211 1 1111 2344555666666777788889999995 6
Q ss_pred HHHHHHHHHHHhhHHhhhH--H---------------------HHHHHHHHHHHHH-HHHHHHHHHHHHhccccc--hhh
Q psy16666 81 LFLLITVFVTCLPIPLMTL--D---------------------TWWFFAMISISGV-FAVTFSVVFAYVADVTEE--HER 134 (167)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--~---------------------~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~r 134 (167)
++...+.++.++++....+ + .+..++...+.|+ .+..+..-++++++..++ ++.
T Consensus 337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~ 416 (477)
T TIGR01301 337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQ 416 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCC
Confidence 6667775555554443321 1 2555666677787 456777888999998885 455
Q ss_pred HHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 135 SLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 135 ~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
|..+|+.|.+..+ .+..+..|.+.+.
T Consensus 417 G~~mgilN~~I~lpQii~sl~~g~~~~~ 444 (477)
T TIGR01301 417 GLSMGVLNLAIVIPQIIVSLGSGPWDQL 444 (477)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 6666566664443
No 224
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.11 E-value=0.00017 Score=55.88 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcc--h----H-HHHHHHHHHHhhHHhhh-----------HHHHHHHHHHHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGR--K----L-FLLITVFVTCLPIPLMT-----------LDTWWFFAMISISGVF 114 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~--r----~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~ 114 (167)
++..+...+..++..|+.+++=.|..| | + =+.+++++.+++...+. .+.++++...++.+++
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 567788888888888887777555522 1 1 13455555555544432 1567777778888887
Q ss_pred H-HHHHHHHHHHhccccchhhHHHHHHHHHHHhhhhccchhhHhhh
Q psy16666 115 A-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQYSSPSLTPFYYY 159 (167)
Q Consensus 115 ~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~gp~i~g~l~~ 159 (167)
. ...|...++++++.|++.|+..+|.+..... .+|+.++|.+..
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~-~~~~~~~g~~~~ 435 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSG-AIANYLAGVIAD 435 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6 4567999999999999999999999854332 346666666654
No 225
>KOG3764|consensus
Probab=98.05 E-value=9e-06 Score=60.47 Aligned_cols=135 Identities=11% Similarity=0.019 Sum_probs=85.4
Q ss_pred HHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHH--HHHHHHHHhhHHh--hhHH
Q psy16666 25 EFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL--LITVFVTCLPIPL--MTLD 100 (167)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~--~~~~ 100 (167)
...+..+ .-|.++.+..+.-.++..+.|..+--..+.+.++..+.|.++||++..+.+ ..+++...++... ++.+
T Consensus 282 ~n~~laf-LePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~ 360 (464)
T KOG3764|consen 282 SNSSLAF-LEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATS 360 (464)
T ss_pred ccchHHH-hCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhh
Confidence 3344445 688899987776667766779988889999999999999999999943332 2223333322222 2224
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHhccccch---hhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 101 TWWFFAMISISGVFA----VTFSVVFAYVADVTEEH---ERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 101 ~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
...+++-.+..++.. ...-+...+..|.-..+ .-+...++...++.+ ++||.++|.+.+.
T Consensus 361 ~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~ 429 (464)
T KOG3764|consen 361 IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA 429 (464)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence 444444443333322 22223444444443333 567788888888888 9999999998753
No 226
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.00 E-value=0.00011 Score=54.88 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc-----chHHHHHH-HHHHHhhHHhhhH------H--------H--HH-
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-----RKLFLLIT-VFVTCLPIPLMTL------D--------T--WW- 103 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g-----~r~~~~~~-~~~~~~~~~~~~~------~--------~--~~- 103 (167)
.+....+...+...+.+ +..+.+|+.+|+.+ ||...++. ......+.....+ + . +.
T Consensus 12 vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~ 90 (403)
T PF03209_consen 12 VPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLA 90 (403)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHH
Confidence 33345566666665554 46899999999988 77665554 3333332222211 1 1 11
Q ss_pred -HHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 104 -FFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 104 -~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
..+...+.|.+ .....+..+++.|..|||+|+++.++...+.-+ +++..+.|.+.+
T Consensus 91 ~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~ 150 (403)
T PF03209_consen 91 LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD 150 (403)
T ss_pred HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22233455554 345568899999999999999999998887666 777777776654
No 227
>KOG0253|consensus
Probab=97.93 E-value=0.00012 Score=54.43 Aligned_cols=108 Identities=14% Similarity=-0.035 Sum_probs=82.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMISIS 111 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 111 (167)
...+..-.+...+.+..+..++......+..+++..+|..+|++|||+..........+...+- ..++.++.+.+.+.
T Consensus 97 ~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~ 176 (528)
T KOG0253|consen 97 LSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALW 176 (528)
T ss_pred HHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHH
Confidence 4444444455555666677999999999999999999999999999999888877666644443 34777888888888
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHH
Q psy16666 112 GVFAVTFSVVFAYVADVTEEHERSLAYGLV 141 (167)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 141 (167)
|++-+..|...++-.|..|..+|..-.-..
T Consensus 177 ~~g~gg~pv~~~~yle~lp~~~r~~~~V~~ 206 (528)
T KOG0253|consen 177 GFGVGGLPVDSAIYLEFLPSSHRWLLTVMS 206 (528)
T ss_pred hccCCCccHhHHHHHHhccCcCCCcchhHH
Confidence 885444888888999999988887655443
No 228
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.91 E-value=0.00071 Score=53.58 Aligned_cols=145 Identities=13% Similarity=0.021 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchH---HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchH-HHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTF---LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKL-FLLITVF 88 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~ 88 (167)
|.+...++..++..+.+.. ...+.|........++. ...++......++..++..+.|.+..+++|-| .++++..
T Consensus 310 r~~~~~lvi~fi~G~~~~s-~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~ 388 (599)
T PF06609_consen 310 RGFAALLVISFISGMNFFS-VNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSV 388 (599)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHH
Confidence 3444444555555444423 34556665554433322 23467777788888889999999998887544 4455654
Q ss_pred HHHhhHHhhhH----HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 89 VTCLPIPLMTL----DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 89 ~~~~~~~~~~~----~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
...+....++. +....+...++.|++. ....+....++-..|+++-+.+.++..+...+ .+|..+...++
T Consensus 389 ~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 389 LMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444344432 3334445566777754 44446667777788999999999998888777 55655555443
No 229
>KOG2533|consensus
Probab=97.88 E-value=0.00031 Score=54.48 Aligned_cols=127 Identities=12% Similarity=0.072 Sum_probs=79.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hcchHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL----WGRKLFLLIT 86 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~g~r~~~~~~ 86 (167)
+.+.+|...+..++....... ...++|.++++..+.+..+.+.+.....++.+++.+.+|+++|| ..+|......
T Consensus 271 ~dp~vw~~~l~~~~~~lv~~~-~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~ 349 (495)
T KOG2533|consen 271 KDPGVWPFSLCYFFLKLVNYG-FSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVF 349 (495)
T ss_pred hchhHHHHHHHHHHHhhcccc-HHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345667676666666665544 58899999998555666677888899999999999999999999 5566555555
Q ss_pred HHHHH-hhHHhhhH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchhhHHHH
Q psy16666 87 VFVTC-LPIPLMTL-DTWWFFAMISISGV--FAVTFSVVFAYVADVTEEHERSLAY 138 (167)
Q Consensus 87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~r~~~~ 138 (167)
..+.. ++...+.. +........++.+. .....+......++...++.|....
T Consensus 350 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~ 405 (495)
T KOG2533|consen 350 LCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTT 405 (495)
T ss_pred HHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHH
Confidence 33333 33233322 21112222222222 2344556777777777665554443
No 230
>KOG2563|consensus
Probab=97.86 E-value=0.00027 Score=53.57 Aligned_cols=145 Identities=14% Similarity=0.005 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHh--HHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGL--LTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
++-|.+++...+..+..++ +....+..+.+.+.+ +...+-+..-++.+.+.+....+-|+.||+|-|....++....
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 3444444444444444322 122333334444444 3345578888899999999999999999999999999887777
Q ss_pred HhhHHhhh--H------HHH--HHHHHHHHHHHHHHHHHHH-HHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 91 CLPIPLMT--L------DTW--WFFAMISISGVFAVTFSVV-FAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 91 ~~~~~~~~--~------~~~--~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
.++..+=. . ..+ ....+..+.+....+.-.. .-...-++|+++|+.+..+-.....+ ++|-++...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 66544422 1 222 2222223333222222222 34556689999999999887766555 4444444444
Q ss_pred h
Q psy16666 158 Y 158 (167)
Q Consensus 158 ~ 158 (167)
.
T Consensus 200 V 200 (480)
T KOG2563|consen 200 V 200 (480)
T ss_pred c
Confidence 3
No 231
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=97.83 E-value=0.00034 Score=40.89 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL 99 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 99 (167)
..|.+|...++.+.+.. +.+++.+...+++.++.+...++.++..+++.+..+.+...+.....+.
T Consensus 11 yTplLP~M~~~~~ls~~-~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLS-QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHhHhHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 47889988887776665 6699999999999999999999999988888888888777776666554
No 232
>KOG2816|consensus
Probab=97.75 E-value=0.0002 Score=55.14 Aligned_cols=123 Identities=17% Similarity=0.277 Sum_probs=95.8
Q ss_pred HHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhh-hhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHH
Q psy16666 38 SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIG-ALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVF 114 (167)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 114 (167)
+.|.+...+-+..+.+...+.......+++.+.. .+...+|-|+++..++..-.+....+++ +.|.++...++..+.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~ 344 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA 344 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Confidence 3445544455556668788888888888888877 7788889888888887766665555544 778888888777777
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 115 AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
....+...+.++.+.+++++|+++++......+ .++|.+-+.++..
T Consensus 345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 778899999999999999999999999998888 8888877766543
No 233
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.72 E-value=0.00079 Score=54.09 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=79.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhhhHH----------HH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLMTLD----------TW 102 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~----------~~ 102 (167)
...+..|+.+..+.+...+..+...+.....+...++|+++|+ +||++.+.++.++..++..+++.+ ..
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~ 86 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDL 86 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHH
Confidence 3344555554444444455666677777777888999999996 799999988877777766555431 11
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhccccch---hhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 103 WFFAMISISGVF-AVTFSVVFAYVADVTEEH---ERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 103 ~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
..+.+..+..++ ++.-+...+...|.++++ +|.+.+.+++.+.++ .+++.+.+++-
T Consensus 87 ~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~ 148 (654)
T TIGR00926 87 LDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR 148 (654)
T ss_pred HHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333 345578888888888754 356667777777777 55666666554
No 234
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.69 E-value=0.0047 Score=46.76 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhh--hHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTF--PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM--TLDTWWFFAMI 108 (167)
Q Consensus 33 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 108 (167)
.-|++..|+.+. +.++.+...-+.-+..=..+....+...+.|..+.|++++++.+...+...++ ..+.+.+-+.-
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q 101 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQ 101 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 367787787664 33443333345455555666777888999999999999999877666654443 34777788888
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 109 SISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
++.|...+...+.++++-...|+++-.++.+....+.-+ .++..+|-.+.
T Consensus 102 ~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 102 FFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888999999989998888888877666555 55555554443
No 235
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.61 E-value=0.011 Score=45.88 Aligned_cols=109 Identities=12% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhh-hhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----------------------------
Q psy16666 50 LMNGLIMGIKGFLSFLS-APLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----------------------------- 99 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------------------------- 99 (167)
+.+.++-+...+...+. .+..+++++|++|++++............++..
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 45677777776666666 899999999999999876653333332222211
Q ss_pred ----HHHHHHHHHHHHHHHH-HHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 100 ----DTWWFFAMISISGVFA-VTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 100 ----~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
+.|..-+..+.....+ ...+ ..++++.|.+.+++-.+-.++.....++ .+|+.+..++.
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333344433 3445 7899999999999999999999999888 67776666655
No 236
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.60 E-value=1.1e-07 Score=72.42 Aligned_cols=122 Identities=18% Similarity=0.243 Sum_probs=75.0
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh---H---HH-----H
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT---L---DT-----W 102 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~---~---~~-----~ 102 (167)
..+.+...++.+..+.. .......+...++.+....+.||+|||++++.+.....+....+. . +. .
T Consensus 273 ~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 273 FYYSPSIFENAGISNSF---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33445555554444431 222334466667777888999999999999888666555444332 1 11 1
Q ss_pred HHHHHHHHHH-HHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhh
Q psy16666 103 WFFAMISISG-VFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYY 158 (167)
Q Consensus 103 ~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~ 158 (167)
..+....+.. ..+ +..+..+.+.+|.+|++.|+++.++......+ .++|.+...+.
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~ 409 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF 409 (451)
T ss_pred ccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 1222222222 222 45567778999999999999999998887766 55555544443
No 237
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.58 E-value=0.00078 Score=54.04 Aligned_cols=81 Identities=9% Similarity=0.109 Sum_probs=56.3
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhc--chHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWG--RKLFLLITVF 88 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~~ 88 (167)
++.++...+..++....... ...++|.|+++..+.+..+++++.....+ +..++.+..|++.||++ .|+.+.++..
T Consensus 329 n~~f~~~~l~~~~~~~~~~~-~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~ 407 (633)
T TIGR00805 329 NPIYMLVILAQVIDSLAFNG-YITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAIC 407 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHH
Confidence 34444455555555555444 57789999998777777787888877666 56789999999999998 4556655544
Q ss_pred HHHhh
Q psy16666 89 VTCLP 93 (167)
Q Consensus 89 ~~~~~ 93 (167)
...++
T Consensus 408 ~~~~~ 412 (633)
T TIGR00805 408 LSTLS 412 (633)
T ss_pred HHHHH
Confidence 44443
No 238
>KOG0255|consensus
Probab=97.58 E-value=0.011 Score=46.29 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---HHH--HHHHHHHHHHH-HHHHHHHHHHHHhccc
Q psy16666 56 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL---DTW--WFFAMISISGV-FAVTFSVVFAYVADVT 129 (167)
Q Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 129 (167)
...............+...|++|||.....+.....++...... ... ...+...+..+ .+..+.....+..|++
T Consensus 356 ~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 435 (521)
T KOG0255|consen 356 FTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI 435 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444466666677789999999999999987777776666554 111 22232333323 3445556699999999
Q ss_pred cchhhHHHHHHHHHHHhh--hhccchhh
Q psy16666 130 EEHERSLAYGLVSSETNQ--YSSPSLTP 155 (167)
Q Consensus 130 ~~~~r~~~~~~~~~~~~~--~~gp~i~g 155 (167)
|+..|..+.+..+....+ +++|.+..
T Consensus 436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 436 PTVVRNTAVGAISAAARLGSILAPLFPL 463 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888777 56665543
No 239
>KOG3762|consensus
Probab=97.48 E-value=9e-05 Score=57.25 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=55.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHH
Q psy16666 22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIP 95 (167)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~ 95 (167)
.++.....+. +.|.++.|.++.+.... +.|.++...-+..+++.|++|.++||+.+|+.++++ .+....+.+
T Consensus 20 ~~~~~~~~g~-l~pll~vy~kQLGl~p~-~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~f 92 (618)
T KOG3762|consen 20 YLFFGARFGS-LFPLLAVYFKQLGLNPA-VVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATF 92 (618)
T ss_pred eeeeeecccc-cchHHHHHHHHcCCCHH-HhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 3444455555 69999999998887775 669999999999999999999999999977766665 444444333
No 240
>KOG1330|consensus
Probab=97.44 E-value=0.0015 Score=49.80 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=71.4
Q ss_pred HHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcch----HHHHHHHH-------HHHhhHHhhhH---HHHHHH
Q psy16666 40 LNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVF-------VTCLPIPLMTL---DTWWFF 105 (167)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~-------~~~~~~~~~~~---~~~~~~ 105 (167)
+..+..+.+..+..+...+...++.+|..++|.++||+.|+ .......+ .++....++.. +.....
T Consensus 273 ~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~ 352 (493)
T KOG1330|consen 273 YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFG 352 (493)
T ss_pred HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHH
Confidence 33344433333334556677788889999999999994321 12222211 11111122221 233334
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666 106 AMISISGVFAVT--FSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC 160 (167)
Q Consensus 106 ~~~~~~g~~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~ 160 (167)
+..++.|....+ .++..-+..|..||++|.++.++....... +-+|.+.|.+.+.
T Consensus 353 ~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 353 LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 444555553332 235566778999999999999998887777 7777788888764
No 241
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=97.39 E-value=0.017 Score=44.25 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH----hhHHh-hhH-HH-HHHHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC----LPIPL-MTL-DT-WWFFA 106 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~----~~~~~-~~~-~~-~~~~~ 106 (167)
...+..|+...+.++ ..+|..-+...+....+.....++.+|+|..+.=.++...-. .+... +.. +. ...-.
T Consensus 278 ~~lmt~yl~~~G~s~-~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSP-SVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISA 356 (432)
T ss_pred cHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH
Confidence 445566777765554 567999999999999999999999999997777666532211 11111 111 11 11222
Q ss_pred HHHHHHHH-H--H---HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 107 MISISGVF-A--V---TFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 107 ~~~~~g~~-~--~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..++.|+. + | +--...-++.|..|+++|+...|..++..++
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~l 403 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSL 403 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHH
Confidence 22333331 1 2 2236778899999999999999999888777
No 242
>KOG4686|consensus
Probab=97.34 E-value=1.6e-05 Score=57.02 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhh-----hHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy16666 51 MNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLM-----TLDTWWFFAMISISGVFA-VTFSVVFA 123 (167)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~ 123 (167)
+..++.+.++....+.+.+.|++.|| +|-|..-++-+....++-..+ .+++|.+...|++.|+++ ..-...+.
T Consensus 80 kftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~ 159 (459)
T KOG4686|consen 80 KFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNK 159 (459)
T ss_pred eeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcc
Confidence 44788899999999999999999997 565554333333233333333 348899999999999976 45457889
Q ss_pred HHhccccchhhHHHHHHHHHHHhh
Q psy16666 124 YVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 124 ~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
+..-++..++-..++|+..+...+
T Consensus 160 yav~wFKGKELn~vfGlqlSvAR~ 183 (459)
T KOG4686|consen 160 YAVYWFKGKELNFVFGLQLSVARL 183 (459)
T ss_pred eeEEEecCccccchhhHHHHHHHh
Confidence 999999999999999998877666
No 243
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.33 E-value=0.0022 Score=48.39 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-HHHHHhhHHhhhH----HHHHHHH-HHHHHHHH-HHHHHH
Q psy16666 48 TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-VFVTCLPIPLMTL----DTWWFFA-MISISGVF-AVTFSV 120 (167)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~~~~~~~~~~~~~----~~~~~~~-~~~~~g~~-~~~~~~ 120 (167)
.....+...++..+...+..|..|.++|+.|+||...-. ..+..+....+.. ++++..+ ...+..++ ......
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf 135 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF 135 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence 444558889999999999999999999999966654433 3333333333332 3444433 33444553 456668
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 121 VFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..+++.+..++++.++..+.-.....+
T Consensus 136 yds~L~~~~~k~~~~riS~lg~~~gyl 162 (438)
T COG2270 136 YDSMLPRLTTKDNMGRISGLGWALGYL 162 (438)
T ss_pred hhhHhhhhcCccccCcccccccccccc
Confidence 899999999988777776654444333
No 244
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.32 E-value=0.011 Score=45.46 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=73.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----cchHHHHHHHHHHHhhHHhhhH------HHH
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW-----GRKLFLLITVFVTCLPIPLMTL------DTW 102 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~------~~~ 102 (167)
.+..|.+.++++.++. +.....+...+.. ...|+.|.++|.+ .||+-++++.++..++...+.. +..
T Consensus 10 ~~~~~~l~~~l~ls~~-~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPA-QLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHHHHcCCCHH-HHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 3444555555665554 4465555554444 4469999999986 3666666666555443333322 333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcccc--chhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 103 WFFAMISISGVFA-VTFSVVFAYVADVTE--EHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 103 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
...+..++..++. .......+++.|... ++.|+...+.......+ .++..++|.+.+..
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~ 151 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF 151 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3333444444433 333467778878773 33367777777666666 77777777776543
No 245
>PTZ00207 hypothetical protein; Provisional
Probab=97.15 E-value=0.0041 Score=49.45 Aligned_cols=148 Identities=9% Similarity=-0.005 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCc-hHHHHHH-HHHHHHHHHHhhhhhhhhhhhhhcch--------H
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDH-TFLMNGL-IMGIKGFLSFLSAPLIGALSDLWGRK--------L 81 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~g~l~dr~g~r--------~ 81 (167)
+..+|.++...++.... +......+.+..+...+. ...+... ..+..+++..+|.+..|.++...-+| +
T Consensus 352 ~~d~Wll~~~~~cg~g~-gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt 430 (591)
T PTZ00207 352 TARLWCLLWSIFCCVGA-HFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPIT 430 (591)
T ss_pred chhHHHHHHHHHHhhCc-hheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchh
Confidence 44566665555444433 443456667777777333 2221122 56788899999999999887322221 2
Q ss_pred HHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhh
Q psy16666 82 FLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTP 155 (167)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g 155 (167)
..+....++.++..++.. +...+.+..++.|++. ...+.....++|++. ++-++-+.+.....-+ .+.-.+.|
T Consensus 431 ~~l~~~~~~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G 509 (591)
T PTZ00207 431 IALFIPSVCIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYG 509 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHH
Confidence 222222223344344433 3257788888999865 566789999999999 7778777666555444 44445666
Q ss_pred Hhhhhc
Q psy16666 156 FYYYCN 161 (167)
Q Consensus 156 ~l~~~~ 161 (167)
.+++..
T Consensus 510 ~~Yd~e 515 (591)
T PTZ00207 510 EWYTQQ 515 (591)
T ss_pred HHHHHH
Confidence 666543
No 246
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.82 E-value=0.14 Score=38.93 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=59.8
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHHHHHH-HHHHH
Q psy16666 46 DHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-----MTLDTWWFFAMISISGVF-AVTFS 119 (167)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~-~~~~~ 119 (167)
....++..+....+.++-+++.--...+ |+.+.+++.+...+..+.+.+ +..+.|..++..+..|+. +..+.
T Consensus 277 ~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV 354 (402)
T PF02487_consen 277 FSPRDQYRWYQLLYQLGVFISRSSLPFF--RIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV 354 (402)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcceeee--ehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 3344555677777777776665433222 333323322221111111111 112677777777888884 56677
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 120 VVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 120 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..+..+.|..|+++|..++|.....-+.
T Consensus 355 NtF~~I~~~~~~~~REFslg~vsvsds~ 382 (402)
T PF02487_consen 355 NTFYRISEEVPPEDREFSLGAVSVSDSL 382 (402)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhH
Confidence 7778888888999999999988777666
No 247
>KOG0252|consensus
Probab=96.72 E-value=0.0026 Score=48.66 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=60.2
Q ss_pred HHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhHHHH------HHHHHHHHHHHHH--HHHHHHHHHHhccccch
Q psy16666 61 FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTW------WFFAMISISGVFA--VTFSVVFAYVADVTEEH 132 (167)
Q Consensus 61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~ 132 (167)
.....+..+...+.|++|||+..+.++++..+.....+..+. -+++...+..+++ +-......+.+|.+|.+
T Consensus 359 ~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar 438 (538)
T KOG0252|consen 359 CSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR 438 (538)
T ss_pred HccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH
Confidence 334457778889999999999999998888877666554221 2223333333333 33346777889999999
Q ss_pred hhHHHHHHHHHHHhh
Q psy16666 133 ERSLAYGLVSSETNQ 147 (167)
Q Consensus 133 ~r~~~~~~~~~~~~~ 147 (167)
.|++..|+...+.-.
T Consensus 439 vR~t~hGIsAA~GK~ 453 (538)
T KOG0252|consen 439 VRSTCHGISAASGKA 453 (538)
T ss_pred HhhhhhhHHHHhccc
Confidence 999999987665544
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.71 E-value=0.052 Score=42.08 Aligned_cols=95 Identities=15% Similarity=0.270 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcch---H----HHHHHHHHHHhhHHhhhH------------HHHHHHHHHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRK---L----FLLITVFVTCLPIPLMTL------------DTWWFFAMISISGV 113 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r---~----~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~g~ 113 (167)
.+..+...+..++.+|+..++-.|.+++ + -+-++..++..++..+.. +.++++...+++++
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~ 406 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSF 406 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 5677888888888888888777774433 1 123333333333332211 67888888899999
Q ss_pred HHH-HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 114 FAV-TFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 114 ~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
+.- ..|...+++.+..|++-.+..++.+......
T Consensus 407 gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~ 441 (498)
T COG3104 407 GELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAA 441 (498)
T ss_pred HHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 874 5678999999999999888888877665544
No 249
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.66 E-value=0.2 Score=38.56 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT 86 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (167)
+..+.++..-++...+... +....|.++.+....+-...+..-..-.+..++..+..|.+.||..|.+++..+
T Consensus 2 ~~~~~Ly~sh~ls~w~dR~-w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~ 74 (432)
T PF06963_consen 2 RALWRLYLSHFLSTWGDRM-WEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS 74 (432)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence 3455677777777777665 677778888777544433334444556678889999999999999999987666
No 250
>KOG3098|consensus
Probab=96.59 E-value=0.016 Score=44.72 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=75.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHHHHHHHHH-HHHHHHHHhccccchh
Q psy16666 56 MGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISISGVFAVT-FSVVFAYVADVTEEHE 133 (167)
Q Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 133 (167)
.++......+.+++.+.+.|+.|.|+.+.++..........+.+ |.+.++....+.|++++. +.....+++|..++|.
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhh
Confidence 55666777888999999999999999999998877776555544 778888888999997764 6677889999999999
Q ss_pred hHHHHHHHHHHHhh
Q psy16666 134 RSLAYGLVSSETNQ 147 (167)
Q Consensus 134 r~~~~~~~~~~~~~ 147 (167)
+.+..++.......
T Consensus 136 ie~Nisi~Wai~~~ 149 (461)
T KOG3098|consen 136 IERNISIFWAIGQS 149 (461)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999887776666
No 251
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.53 E-value=0.00048 Score=54.14 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=2.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--
Q psy16666 22 IFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-- 99 (167)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-- 99 (167)
.+......++ ....++..-++++..+ .+.|++.+.+-++..+..++..++.+|..|-+.+-.+.++.+++.++++.
T Consensus 12 ~~~q~~~~g~-~~~~lttiErRF~l~S-~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPh 89 (539)
T PF03137_consen 12 GLFQMMVSGY-VNSSLTTIERRFGLSS-SQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPH 89 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccH
Confidence 3344333333 4555666666666555 46699999999999999999999999987777777776666665544331
Q ss_pred -----------H---------------------------------------HHHHHHHHHHHHHHH-HHHHHHHHHHhcc
Q psy16666 100 -----------D---------------------------------------TWWFFAMISISGVFA-VTFSVVFAYVADV 128 (167)
Q Consensus 100 -----------~---------------------------------------~~~~~~~~~~~g~~~-~~~~~~~~~~~~~ 128 (167)
+ ...++++.++.|+++ ..++...+|+=|.
T Consensus 90 f~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDn 169 (539)
T PF03137_consen 90 FLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDN 169 (539)
T ss_dssp --------------------------------------------------------------SSS---------------
T ss_pred hhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccc
Confidence 0 122344557777754 5778999999999
Q ss_pred ccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 129 TEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 129 ~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
.++++-...+|+.+....+ ++|-.+++....
T Consensus 170 v~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 170 VSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp ---------------------------------
T ss_pred cccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 9999989999988887777 666667776654
No 252
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.42 E-value=0.011 Score=43.16 Aligned_cols=61 Identities=8% Similarity=-0.020 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 100 DTWWFFAMISISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 100 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
+++.++++.++.|.+. ...+..+.+++++.|+|++++.+++.+.++++ .+||.+++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILS 72 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 6788888889999865 56789999999999999999999999999998 9999999988743
No 253
>KOG3098|consensus
Probab=96.37 E-value=0.31 Score=37.80 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hcchHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNR---TFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL---WGRKLFLLI 85 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr---~g~r~~~~~ 85 (167)
+++...+....+...+...+ +....|.... .....+....++.....+++..++....+.+.+| +||++.+.+
T Consensus 239 ~~~ml~L~~~f~~tG~~~Sf-~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~ 317 (461)
T KOG3098|consen 239 TPKMLLLFPFFFYTGLETSF-WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLI 317 (461)
T ss_pred CHhHHHHHHHHHHHHHHHHH-HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhH
Confidence 34444444444444333333 4444454332 2333444444555566677777777777777754 788988888
Q ss_pred HHHHHHhhHHhhhH--------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHHHH
Q psy16666 86 TVFVTCLPIPLMTL--------------------DTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSE 144 (167)
Q Consensus 86 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 144 (167)
+..+..+...+... +.....+..++.|+. .......+..+.+.. +++|.++.++...-
T Consensus 318 ~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfy 396 (461)
T KOG3098|consen 318 GIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFY 396 (461)
T ss_pred HHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHH
Confidence 75554443333211 233455555777775 345567888888888 56678777766554
Q ss_pred Hhh
Q psy16666 145 TNQ 147 (167)
Q Consensus 145 ~~~ 147 (167)
..+
T Consensus 397 q~~ 399 (461)
T KOG3098|consen 397 QSV 399 (461)
T ss_pred HHH
Confidence 444
No 254
>PRK03612 spermidine synthase; Provisional
Probab=96.32 E-value=0.39 Score=37.97 Aligned_cols=42 Identities=14% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy16666 36 IISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 77 (167)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 77 (167)
....++....+.+....+.+.+++..+..+|+...+++.++.
T Consensus 36 ~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~ 77 (521)
T PRK03612 36 LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA 77 (521)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 334444444555555668899999999999999888887443
No 255
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.20 E-value=0.0012 Score=51.88 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHH-HHHhhhhhhhhhhhhhc--chHHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPLIGALSDLWG--RKLFLLITV 87 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g--~r~~~~~~~ 87 (167)
+|+.+....+........... ...++|.|++.....++..++++.....+ +..++.+++|++.+|+. .|..+..+.
T Consensus 303 ~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~ 381 (539)
T PF03137_consen 303 TNPVFMCLILAGVFESFIVSG-FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI 381 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence 344455555555555554434 58899999998877777776777665444 56688899999999875 444443332
Q ss_pred HHHHhhHHh----hhH------------HH-------------------------------------HHHH---HHHHHH
Q psy16666 88 FVTCLPIPL----MTL------------DT-------------------------------------WWFF---AMISIS 111 (167)
Q Consensus 88 ~~~~~~~~~----~~~------------~~-------------------------------------~~~~---~~~~~~ 111 (167)
+...+.... +.. ++ ..+. +..++.
T Consensus 382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~ 461 (539)
T PF03137_consen 382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL 461 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence 222221111 100 11 0011 111111
Q ss_pred HHH-HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---hhccchhhHhhhh
Q psy16666 112 GVF-AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ---YSSPSLTPFYYYC 160 (167)
Q Consensus 112 g~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~gp~i~g~l~~~ 160 (167)
.+. .....+.....-+..|+++|+.++|+......+ +-||++-|.+.+.
T Consensus 462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 121 223345556667888999999999999988877 8899999988753
No 256
>KOG2563|consensus
Probab=96.15 E-value=0.009 Score=45.60 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcc-hHHHHHHHHHHHhh-HHhhhH-----HHHHHHHHHHHHHH-HHHHHHHH
Q psy16666 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGR-KLFLLITVFVTCLP-IPLMTL-----DTWWFFAMISISGV-FAVTFSVV 121 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~-r~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~g~-~~~~~~~~ 121 (167)
...|.+.....++.+++..+.|.+.||.++ |.+.++......++ ..+... ..+.+.....+.|. +.+..|..
T Consensus 301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig 380 (480)
T KOG2563|consen 301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIG 380 (480)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcc
Confidence 455888888999999999999999999874 34444444333333 222111 33444455555565 45677888
Q ss_pred HHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 122 FAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 122 ~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.-+-.|..-|..-++..|+.+...++
T Consensus 381 ~ElgvE~TyPv~E~tSsGll~~~gq~ 406 (480)
T KOG2563|consen 381 FELGVETTYPVAEGTSSGLLNLSGQI 406 (480)
T ss_pred eeeeeeeccccCCcccceeEEeehhH
Confidence 88888877666667777776665555
No 257
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.89 E-value=1.4 Score=34.19 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcch-HHHHHHHHHHHhhHHhhh--------------HHHHHHHHHHHHHHHHH
Q psy16666 51 MNGLIMGIKGFLSFLSAPLIGALSDLWGRK-LFLLITVFVTCLPIPLMT--------------LDTWWFFAMISISGVFA 115 (167)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r-~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~ 115 (167)
..-.....+.++..+|..+..+.. .-++| +.+.+..+.-.+..+++. .+-+..++..++.|+.+
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 335566778888888887554431 11222 122233333333333221 13455666678888877
Q ss_pred HHH-HHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 116 VTF-SVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 116 ~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
|.. .....+.++..++++|..+-.+...+... .+|..++
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 47777888989999888877777666666 5555443
No 258
>KOG3626|consensus
Probab=93.27 E-value=0.76 Score=37.74 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH-HHhhhhhhhhhhhhhc--chHHHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFL-SFLSAPLIGALSDLWG--RKLFLLITVF 88 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~l~dr~g--~r~~~~~~~~ 88 (167)
++.+....+...+....+.. ...++|.|++...+.++..+..++....+. ..+|..++|++..|+. .|....+.++
T Consensus 391 N~if~~~~l~~~~~~~~~~G-~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~ 469 (735)
T KOG3626|consen 391 NPIFMLVVLASVIESLAITG-YITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIV 469 (735)
T ss_pred CchHHHHHHHHHHHHHHHhh-HHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHH
Confidence 34444445555555555544 488999999988888877777777555444 4577788899999875 4555444433
Q ss_pred HH
Q psy16666 89 VT 90 (167)
Q Consensus 89 ~~ 90 (167)
..
T Consensus 470 ~~ 471 (735)
T KOG3626|consen 470 CS 471 (735)
T ss_pred HH
Confidence 33
No 259
>KOG3574|consensus
Probab=93.03 E-value=1.1 Score=34.25 Aligned_cols=131 Identities=15% Similarity=0.124 Sum_probs=66.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhh-----hhcchHHHHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSD-----LWGRKLFLLIT 86 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~g~r~~~~~~ 86 (167)
++++..+...+.++..-.+. .. .+|.+++.-+.+-.++ +..... ---.-..+.|.++.| |+|||+.-++-
T Consensus 30 ~~~illLl~LYllQGiP~GL-~~-~iP~lL~ak~vSyt~~-a~fS~a--y~P~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGL-IG-AIPLLLQAKGVSYTSQ-AIFSFA--YWPFSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred hhhHHHHHHHHHHcCCchhH-hh-hhHHHhcCCCcchhhh-hhhhhh--hhHHHHHHHHHhhhHHHHHHhhccccceeee
Confidence 44566666666666666655 34 7888887544443333 322211 112234577888888 99999875443
Q ss_pred -HHHHHhhHHhhhH-------------HHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 87 -VFVTCLPIPLMTL-------------DTWWFFAMISISGVFAVTF-SVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 87 -~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..+....+..++. +........++.-+..+.. .+.-.+.-.+..+++-+-+........++
T Consensus 105 ~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~ 180 (510)
T KOG3574|consen 105 CQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTA 180 (510)
T ss_pred hHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhh
Confidence 2222222222221 1111111222333333333 25556666666677766665554444444
No 260
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=92.88 E-value=0.7 Score=35.63 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh---hhH---------HHHHHHHHHHHHHHH
Q psy16666 47 HTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL---MTL---------DTWWFFAMISISGVF 114 (167)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~~g~~ 114 (167)
.+....+.+..+..++..++.....+.-.+..-|+++..+.+...+.... +.. +.+..+.--++....
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~ 331 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI 331 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence 45556677777788888888888877766777777776665544433221 110 111122222444443
Q ss_pred -HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhhc
Q psy16666 115 -AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYCN 161 (167)
Q Consensus 115 -~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~~ 161 (167)
...+-+...+++|+.|+...++.+++..+..++ .++..++..+.+.-
T Consensus 332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334457778899999999999999999999999 77777777766543
No 261
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=92.77 E-value=3.6 Score=31.66 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH--HhhHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q psy16666 52 NGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT--CLPIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVA 126 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~ 126 (167)
-|.+-+...+.+.++....|++..++.+..-+..+.... +....++.. +.|...++.++.+. .....+....-++
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA 366 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIA 366 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888999999999999977777655554442222 222223332 67777777766554 4555565555565
Q ss_pred ccccchhhHHHHHHHHHHHhh
Q psy16666 127 DVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 127 ~~~~~~~r~~~~~~~~~~~~~ 147 (167)
....+|.-+..+|+......+
T Consensus 367 ~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 367 KNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HhccccceeeeeeeHHHHHHH
Confidence 555667778888876554333
No 262
>KOG4332|consensus
Probab=92.54 E-value=0.089 Score=38.11 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh-hhHHHHHHHHHHHHH
Q psy16666 33 TMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPL-MTLDTWWFFAMISIS 111 (167)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 111 (167)
..|+.-...+..+... .++|.+.....-..++...+.|-++||-|||+.-..-++...++++- ....+-.++++|++.
T Consensus 56 QgPYvYyLYstYgFgk-G~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LG 134 (454)
T KOG4332|consen 56 QGPYVYYLYSTYGFGK-GDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLG 134 (454)
T ss_pred cCceeeeeehhcCccC-CccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhh
Confidence 3444333333333333 34466666666667788889999999999999755444444444332 122566778889998
Q ss_pred HHHH-HHHHHHHHH-Hhcc
Q psy16666 112 GVFA-VTFSVVFAY-VADV 128 (167)
Q Consensus 112 g~~~-~~~~~~~~~-~~~~ 128 (167)
|+.. -.+...-++ +.|-
T Consensus 135 GiaTsLLFSaFEsWliaEH 153 (454)
T KOG4332|consen 135 GIATSLLFSAFESWLIAEH 153 (454)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 8864 445555554 3443
No 263
>KOG2601|consensus
Probab=92.42 E-value=3.9 Score=31.30 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=54.1
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666 11 GEPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT 86 (167)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (167)
.++....++...++...+.-. +..-...++...++.+-...+.--.+-+....+..+..|...|+..|+|++...
T Consensus 25 ls~~~i~Ly~gy~lt~wgdR~-W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~ 99 (503)
T KOG2601|consen 25 LSSTVIFLYLGYFLTTWGDRM-WEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW 99 (503)
T ss_pred ccceeehhhHHHHHhHhhHhH-HHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence 455556677777777777655 666677788888776554444444555566778889999999999999987665
No 264
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=92.24 E-value=3.4 Score=32.58 Aligned_cols=92 Identities=16% Similarity=0.241 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH--hhHHhhh--HHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC--LPIPLMT--LDTWWFFAMISISGV-FAVTFSVVFAYVAD 127 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 127 (167)
|.+-++..+.+.+..+..|++-.++.+---+.++.+... ....++. .+.|...++.++.+. .....+....-+++
T Consensus 301 G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~ 380 (511)
T TIGR00806 301 GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIAS 380 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777888888899999998766644333433322222 1222222 277877777766654 45555655555666
Q ss_pred cccchhhHHHHHHHHHH
Q psy16666 128 VTEEHERSLAYGLVSSE 144 (167)
Q Consensus 128 ~~~~~~r~~~~~~~~~~ 144 (167)
....|.-+..+|+.+..
T Consensus 381 ~L~~~~~aLvFGiNtfv 397 (511)
T TIGR00806 381 SLSKELCALVFGINTFV 397 (511)
T ss_pred HhcccceEEEEecHHHH
Confidence 56566667777765543
No 265
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=90.57 E-value=7.3 Score=30.80 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH-HHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh-----H------------------------
Q psy16666 50 LMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT-----L------------------------ 99 (167)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~------------------------ 99 (167)
+.+.++=....+ ...+......+++||++|+++.............+++ .
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 333444443333 4445567788999999999987655333322222211 0
Q ss_pred ----HHHHHHHHHHHHHHHH-HHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 100 ----DTWWFFAMISISGVFA-VTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 100 ----~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
+.|...+..+..-..+ ...+ ..+.++.|.++.++-.+..++.....++ +++..+...+.+
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222223333333 3334 5789999999999999999999998888 444444333333
No 266
>KOG3626|consensus
Probab=90.53 E-value=0.22 Score=40.76 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=91.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH---
Q psy16666 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--- 99 (167)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--- 99 (167)
+...+..+. ....+...-+.+...+. +.|++.+.+-++..+...+..+..-|..|-+.+-++.++.+++.++.+.
T Consensus 107 ~~q~l~~~y-~~s~IttiErRF~i~Ss-~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf 184 (735)
T KOG3626|consen 107 FAQGLYVGY-FNSVITTIERRFKISSS-QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHF 184 (735)
T ss_pred HHHHhhhhh-hhhhhhhhhhhcCCCCC-cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHH
Confidence 333333333 34445555555555554 4699999999999999999999999998888777776666554443321
Q ss_pred ------------------H--------------------------------HH-HHHHHHHHHHHHH-HHHHHHHHHHhc
Q psy16666 100 ------------------D--------------------------------TW-WFFAMISISGVFA-VTFSVVFAYVAD 127 (167)
Q Consensus 100 ------------------~--------------------------------~~-~~~~~~~~~g~~~-~~~~~~~~~~~~ 127 (167)
+ .+ .++++.++.|++. ..++...+|+=|
T Consensus 185 ~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDD 264 (735)
T KOG3626|consen 185 FSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDD 264 (735)
T ss_pred hcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccc
Confidence 0 12 2334446777764 567888999999
Q ss_pred cccchhhHHHHHHHHHHHhh--hhccchhhHhhh
Q psy16666 128 VTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYY 159 (167)
Q Consensus 128 ~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~ 159 (167)
...+++-...+|+.+....+ ++|-++|++...
T Consensus 265 nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~ 298 (735)
T KOG3626|consen 265 NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK 298 (735)
T ss_pred cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 99988888888988866666 555556666554
No 267
>KOG4332|consensus
Probab=89.95 E-value=4.1 Score=29.91 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcch--HHHHHHHHHHHhhHHh--hhH-------HHHHHHHHH-HHHHHHHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRK--LFLLITVFVTCLPIPL--MTL-------DTWWFFAMI-SISGVFAVTFSV 120 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r--~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~-~~~g~~~~~~~~ 120 (167)
|++++.+.+..++++-...++..|-..| ..+.+.+........+ ... +...-+++. .+-...+..+|.
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS 364 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS 364 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence 8899999999999999988887765433 3444444443333222 221 222223333 333445667788
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 121 VFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..-+=++..|++.|++.+.++..=.+.
T Consensus 365 imkmRsqyIPEearstimNfFRvPLni 391 (454)
T KOG4332|consen 365 IMKMRSQYIPEEARSTIMNFFRVPLNI 391 (454)
T ss_pred HHHHHHhhCCHHHHhhhhhheechhhH
Confidence 888889999999999888775543333
No 268
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=89.33 E-value=2.1 Score=32.13 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhHHhhhH-----------HHHHHHHHHHHHHHHHH-HHHHHHHHHhccccch---hhHHHHHHHHHHH
Q psy16666 81 LFLLITVFVTCLPIPLMTL-----------DTWWFFAMISISGVFAV-TFSVVFAYVADVTEEH---ERSLAYGLVSSET 145 (167)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~ 145 (167)
+++.++.++..++..++.. +...+.++..+.+++.| .=|...++..|.++++ +|.+.+.+++.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4556666666666555322 12456666777777655 4478899999999865 4667777788888
Q ss_pred hh--hhccchhhHhh
Q psy16666 146 NQ--YSSPSLTPFYY 158 (167)
Q Consensus 146 ~~--~~gp~i~g~l~ 158 (167)
++ .+++.+.+++-
T Consensus 82 n~G~~~~~~~~~~i~ 96 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ 96 (372)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred hhhhHhhcccchhhc
Confidence 77 55655555554
No 269
>KOG1479|consensus
Probab=87.84 E-value=2.6 Score=32.23 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHHHH-HHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhh----------H-HHHHHHHHHHHHHHHHHH
Q psy16666 50 LMNGLIMGI-KGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMT----------L-DTWWFFAMISISGVFAVT 117 (167)
Q Consensus 50 ~~~~~~~~~-~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~g~~~~~ 117 (167)
...-..... +.+...+|.+.+.++-++-.|+ . .+..++-.+..+++. + +.+++++...+.|+..|.
T Consensus 282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~-l-~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY 359 (406)
T KOG1479|consen 282 WYALLLVFLSFNVFDLIGSILAALLTWPDPRK-L-TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY 359 (406)
T ss_pred hhHHHHHHHHhHHHHHhhhhhhhcccCCCCce-e-hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence 333445555 7788888877776665443333 2 333333333333333 1 567777778888888775
Q ss_pred HH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchh
Q psy16666 118 FS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLT 154 (167)
Q Consensus 118 ~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~ 154 (167)
.. ....+.++..|++++..+-.+....... ..|..++
T Consensus 360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 54 7788889998887765555544443333 4444433
No 270
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=87.21 E-value=5 Score=24.53 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI 85 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 85 (167)
+.......++..++....+.+.|..|.+.....
T Consensus 90 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (141)
T TIGR00880 90 GLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLF 122 (141)
T ss_pred HHHHHhHHHHHHHhHHhHHHHhcccchHHHHHH
Confidence 444455556666666666666666655544333
No 271
>KOG4830|consensus
Probab=86.85 E-value=1.6 Score=31.72 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhh---------hhhcchHHH
Q psy16666 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALS---------DLWGRKLFL 83 (167)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~---------dr~g~r~~~ 83 (167)
++.-...+. +.+++-.|+++.+.++.+. ..++....+...+..++.|..+ ||+|||+..
T Consensus 27 mlNDitASc-WFTYlllfltqiglsp~~~-AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~w 94 (412)
T KOG4830|consen 27 MLNDITASC-WFTYLLLFLTQIGLSPSSR-AMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMSW 94 (412)
T ss_pred HHhhHHHHH-HHHHHHHHHHHhcCCcchh-HHHHHhhHHHHHHhcccccccccccccHHHhhhhcceeee
Confidence 334344333 7788888888888887665 5888889999999999987544 689988753
No 272
>KOG3810|consensus
Probab=85.67 E-value=14 Score=28.19 Aligned_cols=91 Identities=20% Similarity=0.262 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh--hHHhhhH--HHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL--PIPLMTL--DTWWFFAMISISGV-FAVTFSVVFAYVAD 127 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~ 127 (167)
|..-++..+.++++.+..|++--++.|..-++++..-... ..+.++. +.|+..++.++... ..-..+....-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 6666777888889999999998777766444443222222 2222222 66766666655543 44444555555555
Q ss_pred cccchhhHHHHHHHHH
Q psy16666 128 VTEEHERSLAYGLVSS 143 (167)
Q Consensus 128 ~~~~~~r~~~~~~~~~ 143 (167)
...+|.-|..+|+...
T Consensus 354 nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTF 369 (433)
T ss_pred hhhhhhheeeeehHHH
Confidence 5556666777775543
No 273
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=83.54 E-value=4.5 Score=26.52 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 115 AVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.+.....+..++-..++++.|...|+-..-.+.
T Consensus 109 ~gllGisYGilSaSWD~~r~GSllG~~e~~~N~ 141 (153)
T PF11947_consen 109 LGLLGISYGILSASWDPEREGSLLGWEEFKRNW 141 (153)
T ss_pred HHHHhhhhhhcccccCCCCCCCcccHHHHHHhH
Confidence 456667778888888888889999987766554
No 274
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=81.37 E-value=0.58 Score=34.32 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=2.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHhh--h-------------HHHHHHHHHHHHHHHHHHHH
Q psy16666 55 IMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPLM--T-------------LDTWWFFAMISISGVFAVTF 118 (167)
Q Consensus 55 ~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~g~~~~~~ 118 (167)
....+.++..+|....++.--+ ..+|++...+ +.-.+..+++ . .+-++.++..++.|+.+|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s-~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILS-LLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHH-HHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 4567888888888877764211 1344443332 2222222221 1 12344555567777766654
Q ss_pred -HHHHHHHhccccchhhHHHHHHHHHHHhh--hhccch
Q psy16666 119 -SVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSL 153 (167)
Q Consensus 119 -~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i 153 (167)
.....+.++..++++|..+-.+...+... .+|..+
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp -HHHH---------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778888888888887776665555444 444433
No 275
>KOG3097|consensus
Probab=78.91 E-value=22 Score=26.90 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHHHHHHH
Q psy16666 61 FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL-DTWWFFAMISISGVFA 115 (167)
Q Consensus 61 ~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~ 115 (167)
+.....+.+.+.+..++|-|+++.++..........-.. .+..++......|+.+
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa 124 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAA 124 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhcccc
Confidence 334455555668899999999998877766554433222 4556666667777643
No 276
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.45 E-value=14 Score=22.64 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhh-cchHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLW-GRKLF 82 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~ 82 (167)
++-.+.-.+...+.....||+.||+ |.++.
T Consensus 45 a~klssefIsGilVGa~iG~llD~~agTsPw 75 (116)
T COG5336 45 AFKLSSEFISGILVGAGIGWLLDKFAGTSPW 75 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3344455566666677788888886 44443
No 277
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=67.70 E-value=50 Score=24.79 Aligned_cols=81 Identities=16% Similarity=0.005 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCch-H----HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHH
Q psy16666 16 YHALVVIFLEFFAWGLLTMPIISVLNRTFPDHT-F----LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVT 90 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 90 (167)
..+++...+...+.+. .-|.++.+..+....+ . ..-.+......++..++....+++.|++|......++.+..
T Consensus 34 ~~~~~gL~lia~G~G~-~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~ 112 (372)
T PF00854_consen 34 GLFYIGLALIAVGTGG-IKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGM 112 (372)
T ss_dssp CHHHHHHHHHHHHHHC-CHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-ccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHH
Confidence 3445555566666666 5777777665544332 1 11235566677888888899999999999888877776655
Q ss_pred HhhHHhh
Q psy16666 91 CLPIPLM 97 (167)
Q Consensus 91 ~~~~~~~ 97 (167)
.++...+
T Consensus 113 ~~~~~~f 119 (372)
T PF00854_consen 113 LLALIVF 119 (372)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 278
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=63.59 E-value=32 Score=26.09 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL 76 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 76 (167)
+++++.+-.+..+.-..+...+.-+.|....+....+ . |++++.+.+..++|+.+..++..|
T Consensus 243 d~ril~LG~~qslFE~smy~FVflWtPaL~~~~~~~P--~-GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 243 DPRILLLGLIQSLFEGSMYLFVFLWTPALDPDDEELP--L-GLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred CchhHHHHHHHHHHHHHHHHheeeeeceecCCCCCCC--c-hHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555554444433323444455442222222 3 999999999999999998765543
No 279
>KOG2325|consensus
Probab=62.50 E-value=5.8 Score=31.27 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=32.6
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHhhhh
Q psy16666 119 SVVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFYYYC 160 (167)
Q Consensus 119 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l~~~ 160 (167)
....++.+|...|+++++..+++...... .+||++...+...
T Consensus 407 ~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~ 450 (488)
T KOG2325|consen 407 TALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL 450 (488)
T ss_pred chHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence 36788899999999999999988777666 7777766655443
No 280
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=57.01 E-value=73 Score=23.14 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHH----HHHHHhhHHhhhH-------HHHHHHHHHHHHHHHH-HHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLIT----VFVTCLPIPLMTL-------DTWWFFAMISISGVFA-VTFS 119 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~----~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~-~~~~ 119 (167)
......+..+..++....|.+... +.||+-+..- .+...++..+... +...+.+..++.|.+. +..+
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 334444555556777777888764 4566544321 2222222222111 3445555666777654 5555
Q ss_pred HHHHHHhcc--ccchhhHHHHHHHHH
Q psy16666 120 VVFAYVADV--TEEHERSLAYGLVSS 143 (167)
Q Consensus 120 ~~~~~~~~~--~~~~~r~~~~~~~~~ 143 (167)
.......|. ..|++-+...|+.-.
T Consensus 224 ViL~lPhEyK~~~pk~ig~~Fg~iWG 249 (267)
T PF07672_consen 224 VILNLPHEYKGYNPKKIGIQFGLIWG 249 (267)
T ss_pred HHhcChhhhcCCCcceehhHHHHHHH
Confidence 444444443 234444555554433
No 281
>KOG3880|consensus
Probab=56.40 E-value=46 Score=25.14 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 100 DTWWFFAMISISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 100 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
++|..++..+.-|+ +++.+...+--+.+-.++++|..+++.....-+.
T Consensus 341 si~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~ 389 (409)
T KOG3880|consen 341 SIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSI 389 (409)
T ss_pred HHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchh
Confidence 66777777777887 4555554444455555778899888876554333
No 282
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=55.45 E-value=63 Score=21.93 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHH
Q psy16666 57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC 91 (167)
Q Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 91 (167)
....+...++.++.-.+..|.+||..+.+...+.+
T Consensus 35 ~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~g 69 (186)
T PF09605_consen 35 FMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMG 69 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 33456667777888888999999988766544333
No 283
>KOG1237|consensus
Probab=54.61 E-value=1.2e+02 Score=24.80 Aligned_cols=59 Identities=19% Similarity=0.082 Sum_probs=37.5
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh-hcchHHHHHHHHHHHhhHHh
Q psy16666 37 ISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL-WGRKLFLLITVFVTCLPIPL 96 (167)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~ 96 (167)
+.....+.+..+ ..+.-....+.-.........+.++|. +||-+++.++.++..++..+
T Consensus 61 v~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~ 120 (571)
T KOG1237|consen 61 VTYLTLELHASG-GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFG 120 (571)
T ss_pred HHHHHHHhccch-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333334444444 344555566666677778899999996 47888888876655554433
No 284
>KOG3810|consensus
Probab=54.54 E-value=11 Score=28.63 Aligned_cols=93 Identities=8% Similarity=0.024 Sum_probs=61.9
Q ss_pred hhhhhhhhhhhhhcchHHHHHHHHHHHhhHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHH
Q psy16666 65 LSAPLIGALSDLWGRKLFLLITVFVTCLPIPL--MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVS 142 (167)
Q Consensus 65 ~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 142 (167)
+.-.+.=.+.|....|++++.-.+.....+.+ +..+.+.+=+.-++.|...+...+.++++-+..+|+++.++.+...
T Consensus 57 v~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~R 136 (433)
T KOG3810|consen 57 VGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCR 136 (433)
T ss_pred HHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhH
Confidence 33444456789998898877654444333333 3336666656667777777777789999999999999999998877
Q ss_pred HHHhh--hhccchhhHh
Q psy16666 143 SETNQ--YSSPSLTPFY 157 (167)
Q Consensus 143 ~~~~~--~~gp~i~g~l 157 (167)
.+.-. ..|...+-.+
T Consensus 137 aA~L~g~~~g~vlaQlL 153 (433)
T KOG3810|consen 137 AAFLVGKFVGSVLAQLL 153 (433)
T ss_pred HHHHHHhHHHhHHHHHH
Confidence 66555 4444444433
No 285
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=50.92 E-value=1.2e+02 Score=23.63 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH--HHHHHHHHHHHHHHHHH
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISISGVFAV 116 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 116 (167)
+.+.-+-.+...+..+.+.++.+|+..+.-+..+..+..+++...+. +.+.-+++.++.++.++
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg 127 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSG 127 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhh
Confidence 44555566777788888888888887444444444455555555443 56666666666666443
No 286
>KOG0637|consensus
Probab=50.75 E-value=73 Score=25.33 Aligned_cols=59 Identities=17% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHH-H-HHHHhhHHhhhHHHHHHHHHHHHHH
Q psy16666 54 LIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT-V-FVTCLPIPLMTLDTWWFFAMISISG 112 (167)
Q Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~g 112 (167)
+-+..+.+...+.+....++.||+|-|+.++.+ . +..++....+..+.+.....+-..|
T Consensus 336 ~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G 396 (498)
T KOG0637|consen 336 LGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAG 396 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 445567777888889999999999955554444 2 3333333333334444444444444
No 287
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=50.31 E-value=18 Score=28.86 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhC-CCchHHHHHHHHH---HHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666 17 HALVVIFLEFFAWGLLTMPIISVLNRTF-PDHTFLMNGLIMG---IKGFLSFLSAPLIGALSDLWGRKLFLLIT 86 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (167)
.+.+.++++..-.+. ....+|..+++. .+.+..+.+.... .+++=-..+.++=.....|+||||.-++-
T Consensus 4 lL~~LY~lQGiP~GL-~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP 76 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGL-AFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIP 76 (544)
T ss_pred HHHHHHHHcCccccc-ccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhH
Confidence 444555666655544 345677777761 2233333343211 12222222222223344589999987665
No 288
>KOG1479|consensus
Probab=47.92 E-value=1.3e+02 Score=23.39 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy16666 34 MPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDL 76 (167)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 76 (167)
.+.-+.|.++....+. . ........+.+.+.....-.+--|
T Consensus 38 iTa~~y~~~~~~~~~~-~-~~F~~~~~~~a~i~~ll~~~~n~~ 78 (406)
T KOG1479|consen 38 ITASDYYYYRFPGYHN-S-KNFTSSYTLAAQIPLLLFNLLNAF 78 (406)
T ss_pred hccHHHHHhhcCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554443 1 333344444444444444443333
No 289
>KOG3574|consensus
Probab=45.33 E-value=1.5e+02 Score=23.34 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHH-HHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 109 SISGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 109 ~~~g~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
.+.+. ....+...++..+++.||+..|+.+.+.++..++
T Consensus 377 ~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnL 416 (510)
T KOG3574|consen 377 AFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNL 416 (510)
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHh
Confidence 34443 3455668889999999999999999999998888
No 290
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=42.31 E-value=1.1e+02 Score=20.86 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhcchHHHHHH
Q psy16666 58 IKGFLSFLSAPLIGALSDLWGRKLFLLIT 86 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 86 (167)
...+...++.++.=.+..|.+|+.++.+-
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~G~~~i~ 66 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKRGVIFIF 66 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCccHHHHH
Confidence 34566667777777888899888876554
No 291
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=38.51 E-value=61 Score=16.86 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHHHHhhhhhhhhhhhh-hcchHHHHHH
Q psy16666 60 GFLSFLSAPLIGALSDL-WGRKLFLLIT 86 (167)
Q Consensus 60 ~~~~~~~~~~~g~l~dr-~g~r~~~~~~ 86 (167)
.+..++.....|+..|+ ++.++...+.
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t~p~~~~~ 37 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGTSPWFTLI 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 34445556677777775 5665544433
No 292
>KOG3097|consensus
Probab=37.33 E-value=81 Score=24.03 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHH
Q psy16666 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF 88 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 88 (167)
..+++.+.++++...+.+...|.+..++||-+....+..
T Consensus 310 ~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gav 348 (390)
T KOG3097|consen 310 SRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAV 348 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHH
Confidence 456888999999999999999999999999988777633
No 293
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=37.27 E-value=1e+02 Score=18.99 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy16666 17 HALVVIFLEFFAWGL 31 (167)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (167)
.......++.++++.
T Consensus 53 Rt~~FIlicAFGYGl 67 (106)
T PF11872_consen 53 RTLAFILICAFGYGL 67 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555555
No 294
>PF13493 DUF4118: Domain of unknown function (DUF4118); PDB: 2KSF_A.
Probab=36.11 E-value=35 Score=20.33 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhhhhhhhhcch
Q psy16666 60 GFLSFLSAPLIGALSDLWGRK 80 (167)
Q Consensus 60 ~~~~~~~~~~~g~l~dr~g~r 80 (167)
.....+...+.|.+.||..||
T Consensus 85 ~~~~l~va~v~g~l~~~~r~~ 105 (105)
T PF13493_consen 85 FAVFLVVALVTGYLADRYRRQ 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 355567778899999999876
No 295
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=34.90 E-value=1.1e+02 Score=18.63 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhhhhhhh-hcchHHHHHH
Q psy16666 60 GFLSFLSAPLIGALSDL-WGRKLFLLIT 86 (167)
Q Consensus 60 ~~~~~~~~~~~g~l~dr-~g~r~~~~~~ 86 (167)
.+...+...+.|++.|+ ++.++...+.
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~ 79 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLT 79 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHH
Confidence 34444555666666664 6655543333
No 296
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=34.35 E-value=2.6e+02 Score=22.85 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH-hhhHHHHHH-HHHHHHHHHHHH--HHHHHHHHHh
Q psy16666 51 MNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIP-LMTLDTWWF-FAMISISGVFAV--TFSVVFAYVA 126 (167)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~--~~~~~~~~~~ 126 (167)
+.|+...++.++.-.+.-+..-+.+ .|-+..+ .+.+...+... .+......+ +=.....|..++ ..++..+.+.
T Consensus 451 ~~GL~lFla~vG~~aG~~f~~~l~~-~G~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~a~ 528 (562)
T TIGR03802 451 DLGLALFIAVVGLSAGPQAVTAIKE-MGLTLFL-LGIVVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGAVL 528 (562)
T ss_pred HHhHHHHHHHHHHhhhHHHHHHHHH-hhHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHHHH
Confidence 3577777777777777666666633 4544443 33333322211 111111111 111134444332 4456777777
Q ss_pred ccccchhhHHHHHHHHHHHhh---hhccchh
Q psy16666 127 DVTEEHERSLAYGLVSSETNQ---YSSPSLT 154 (167)
Q Consensus 127 ~~~~~~~r~~~~~~~~~~~~~---~~gp~i~ 154 (167)
|..+.+.-..+++..+-..++ ..+|++.
T Consensus 529 ~~~~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 529 ERAGSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred HhcCCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 777655445556665555555 5565543
No 297
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=33.21 E-value=2.4e+02 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=13.5
Q ss_pred hhhhhhcchHHHHHHHHHHHh
Q psy16666 72 ALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 72 ~l~dr~g~r~~~~~~~~~~~~ 92 (167)
.+++|.|++.-.....+....
T Consensus 67 ~l~~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 67 DLASRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHhcccCcHHHHHHHHHHHHH
Confidence 345678888877776555443
No 298
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=32.74 E-value=2.5e+02 Score=22.20 Aligned_cols=82 Identities=13% Similarity=0.033 Sum_probs=36.2
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhhhhhh--------hhhhhhhcchHHH
Q psy16666 12 EPSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLI--------GALSDLWGRKLFL 83 (167)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~l~dr~g~r~~~ 83 (167)
+++.+..-++.|..+++.+ +-..|.++-..-+++...+-+-+....++..+....+ ..+++|.||+.-.
T Consensus 7 ~~~~l~iG~~LFamFFGAG---NLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~~rv~~~f~~ 83 (439)
T PRK15433 7 SRDIIALGFMTFALFVGAG---NIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGV 83 (439)
T ss_pred hhHHHHHHHHHHHHHhcCc---chhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhhcchHHHH
Confidence 3455555555555555543 3345666654444443221222222222222222221 1345578888777
Q ss_pred HHHHHHHHhhHHh
Q psy16666 84 LITVFVTCLPIPL 96 (167)
Q Consensus 84 ~~~~~~~~~~~~~ 96 (167)
....++.....++
T Consensus 84 ~f~~~i~l~IGP~ 96 (439)
T PRK15433 84 LLATVCYLAVGPL 96 (439)
T ss_pred HHHHHHHHHHhhc
Confidence 6664444433333
No 299
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=30.88 E-value=2.9e+02 Score=22.34 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHH-HHHhhhhhhhhhhhhhcchHHHHHHHHHHHhhHHhhhH-----------------------------
Q psy16666 50 LMNGLIMGIKGF-LSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL----------------------------- 99 (167)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------------------------- 99 (167)
+.+.++=+..-+ +..+..++..++.++..+.+++...+........+++.
T Consensus 61 e~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~ 140 (509)
T COG3202 61 ESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKW 140 (509)
T ss_pred hhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcccee
Confidence 444666666555 66778888999999999998876553333222222221
Q ss_pred -----HHHHHHHHHHHHHHHH-HHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 100 -----DTWWFFAMISISGVFA-VTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 100 -----~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
+.|..-+..+..=..+ .... ..+....|++..++-.+.+++++...++ .++..+..++
T Consensus 141 ~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 141 FILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred eeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222223333333 2333 6788899999999999999999998888 4444444444
No 300
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=30.58 E-value=1.7e+02 Score=19.53 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q psy16666 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRT 43 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (167)
+.++..+......--..-+ .....+.+...
T Consensus 99 ~~f~~g~~~~~~NPk~il~-~~~~~~~~~~~ 128 (191)
T PF01810_consen 99 KSFLTGFLLNLLNPKAILF-WLAVFPQFISP 128 (191)
T ss_pred HHHHHHHHHHHHhHHHHHH-HHHhhhcccCc
Confidence 3444444444444444323 35555555554
No 301
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=29.46 E-value=3.1e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHH-HHHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 109 SISGVFA-VTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 109 ~~~g~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
++..+.+ ..+....+.-+++.+|..-|+.+.+.|+..|+
T Consensus 413 ~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNL 452 (544)
T PF13000_consen 413 VLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNL 452 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhc
Confidence 3444433 45567888999999999999999999999988
No 302
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=29.26 E-value=1.4e+02 Score=19.54 Aligned_cols=24 Identities=29% Similarity=0.177 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhhhhhhhhhhcch
Q psy16666 57 GIKGFLSFLSAPLIGALSDLWGRK 80 (167)
Q Consensus 57 ~~~~~~~~~~~~~~g~l~dr~g~r 80 (167)
..+-++..+.....|++.||..++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~ 83 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRS 83 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhcccc
Confidence 345677888889999999998775
No 303
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=26.13 E-value=1.7e+02 Score=18.07 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
|-..+.++=..+..++.+++..|+..+.+-=.++..++.+
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~ 96 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLV 96 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHH
Confidence 6677888888899999999999998766655555444433
No 304
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=26.00 E-value=2.2e+02 Score=19.45 Aligned_cols=22 Identities=23% Similarity=0.083 Sum_probs=18.1
Q ss_pred HHHHHHHhhhhhhhhhhhhhcc
Q psy16666 58 IKGFLSFLSAPLIGALSDLWGR 79 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr~g~ 79 (167)
.+-++..++....|+++||..+
T Consensus 90 GyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 90 GYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred hHHHHHHHHHHHHHHHHHhhhc
Confidence 3557778889999999999885
No 305
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=25.69 E-value=1.2e+02 Score=19.02 Aligned_cols=15 Identities=7% Similarity=-0.051 Sum_probs=5.7
Q ss_pred Hhhhhhhhhhhhhhc
Q psy16666 64 FLSAPLIGALSDLWG 78 (167)
Q Consensus 64 ~~~~~~~g~l~dr~g 78 (167)
...+...-++.+|+|
T Consensus 102 v~~~~~~i~~l~r~g 116 (125)
T TIGR00807 102 LIVTVLVIRWISKSS 116 (125)
T ss_pred HHHHHHHHHHHHHhC
Confidence 333333333334444
No 306
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=25.49 E-value=89 Score=14.71 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhhhhhhhh
Q psy16666 58 IKGFLSFLSAPLIGALSDL 76 (167)
Q Consensus 58 ~~~~~~~~~~~~~g~l~dr 76 (167)
...+..++.+.+.+|+-+|
T Consensus 16 AP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 16 APIIAGIIASLIVGWLRNR 34 (35)
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3445556666666766554
No 307
>PRK02237 hypothetical protein; Provisional
Probab=25.38 E-value=1.7e+02 Score=18.04 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcchHHHHHHHHHHHh
Q psy16666 52 NGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCL 92 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~ 92 (167)
.|-+.+.++=..++.++.+++..|+..+-+-=.++..++.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~ 98 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLV 98 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHH
Confidence 37778888888899999999999988765554555444333
No 308
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=24.21 E-value=3.1e+02 Score=20.50 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=41.5
Q ss_pred HhhhhhhhhhhhhhcchH-----HHHHHHHHHHhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Q psy16666 64 FLSAPLIGALSDLWGRKL-----FLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAY 138 (167)
Q Consensus 64 ~~~~~~~g~l~dr~g~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~ 138 (167)
.+..-.++.++||-|.-. +++.+.....+. .....++|.-++ .....+......++.++.....++--.+.
T Consensus 21 LllaaLG~l~sERsGVlNIglEG~M~~gAf~~~~~-~~~t~spw~gl~---~a~l~g~l~~ll~a~~ti~l~~nqiisG~ 96 (304)
T COG1079 21 LLLAALGGLFSERSGVLNIGLEGIMLLGAFSGALF-AYGTGSPWLGLL---AAALVGALFGLLHAFLTIKLRANQIISGL 96 (304)
T ss_pred HHHHHHHHHHHHHhceeeechhhHHHHHHHHHHHH-HHccccHHHHHH---HHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 344556778888876543 344443332222 011113433322 22334455566677777777777766666
Q ss_pred HHHHHHHhh
Q psy16666 139 GLVSSETNQ 147 (167)
Q Consensus 139 ~~~~~~~~~ 147 (167)
++.-.+.++
T Consensus 97 alnl~a~Gl 105 (304)
T COG1079 97 ALNLLASGL 105 (304)
T ss_pred HHHHHHHHH
Confidence 665555444
No 309
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=23.90 E-value=2.8e+02 Score=19.84 Aligned_cols=22 Identities=23% Similarity=0.467 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q psy16666 18 ALVVIFLEFFAWGLLTMPIISVLN 41 (167)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~ 41 (167)
..+..++.++. +. ..|.+|.++
T Consensus 156 aAl~s~lsf~l-G~-liPLlPy~~ 177 (241)
T cd02435 156 SALTIGLSYFI-GG-LIPLLPYFF 177 (241)
T ss_pred HHHHHHHHHHH-HH-HHHHHHHHH
Confidence 33334444433 23 478888664
No 310
>PRK11469 hypothetical protein; Provisional
Probab=22.11 E-value=2.7e+02 Score=19.01 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=18.4
Q ss_pred HhhhhhhhhhhhhhcchHHHHHHHHHHHhhHH
Q psy16666 64 FLSAPLIGALSDLWGRKLFLLITVFVTCLPIP 95 (167)
Q Consensus 64 ~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 95 (167)
..+...+.++.+++|+|.-++-+.++..++.-
T Consensus 149 ~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~ 180 (188)
T PRK11469 149 TLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQ 180 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445566677777666666665555443
No 311
>KOG1237|consensus
Probab=21.61 E-value=4.6e+02 Score=21.55 Aligned_cols=58 Identities=19% Similarity=0.159 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhhHHHHHHHHHHHhh--hhccchhhHh
Q psy16666 100 DTWWFFAMISISGVFAVTFS-VVFAYVADVTEEHERSLAYGLVSSETNQ--YSSPSLTPFY 157 (167)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~--~~gp~i~g~l 157 (167)
+.+|.+.-.++.|+...... ...-+.-+-+|++.|..+.++.....++ .++..+...+
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv~~v 517 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLVSLV 517 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666688888765443 5566667778999999999988777776 4444444333
No 312
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=21.34 E-value=1.6e+02 Score=16.02 Aligned_cols=31 Identities=19% Similarity=-0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhh
Q psy16666 117 TFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147 (167)
Q Consensus 117 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (167)
..|+.+...-...|++.|-...+..+..++.
T Consensus 30 ~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~ 60 (68)
T PF04117_consen 30 FWPPAQIVNFRYVPPHYRVLFVNVVSFFWNT 60 (68)
T ss_pred hHHHHHHHHhcccChhhhhhhhhhHHHHHHH
Confidence 4567777777778999998888888777766
No 313
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=20.59 E-value=4.6e+02 Score=21.20 Aligned_cols=7 Identities=14% Similarity=0.098 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy16666 53 GLIMGIK 59 (167)
Q Consensus 53 ~~~~~~~ 59 (167)
|+.....
T Consensus 52 gW~y~~~ 58 (504)
T PRK03356 52 GWAFEWY 58 (504)
T ss_pred hHHHHHH
Confidence 4444433
No 314
>PF13782 SpoVAB: Stage V sporulation protein AB
Probab=20.35 E-value=2.3e+02 Score=17.58 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy16666 100 DTWWFFAMISISGVFAVTFSVVFAYVADVTE 130 (167)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (167)
+.+...+.-++.|++.++....-+-+-+.+|
T Consensus 47 ~~~~~~i~GL~~GiFvG~la~ALaEvlnv~P 77 (110)
T PF13782_consen 47 GPILLIIFGLFAGIFVGCLAAALAEVLNVFP 77 (110)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556777777777777777777777
No 315
>PF08080 zf-RNPHF: RNPHF zinc finger; InterPro: IPR012996 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc-binding domain (CHHC motif) in RNP H and F. The domain is often associated with IPR000504 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WEZ_A 2KG1_A.
Probab=20.34 E-value=34 Score=16.26 Aligned_cols=9 Identities=56% Similarity=0.789 Sum_probs=0.0
Q ss_pred hhhhcchHH
Q psy16666 74 SDLWGRKLF 82 (167)
Q Consensus 74 ~dr~g~r~~ 82 (167)
+||+||-..
T Consensus 3 sd~FGRd~~ 11 (36)
T PF08080_consen 3 SDRFGRDLS 11 (36)
T ss_dssp ---------
T ss_pred cchhcchhh
Confidence 577777544
Done!