RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16666
(167 letters)
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 50.5 bits (121), Expect = 5e-08
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 4/128 (3%)
Query: 19 LVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG 78
+ FL LL + L + GL++ L+ PL G LSD +G
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAEDL-GISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 79 RKLFLLITVFVTCLP--IPLMTLDTWWFFAMISISGVF-AVTFSVVFAYVADVTEEHERS 135
R+ LLI + + L + L W + + G+ F A +AD ER
Sbjct: 61 RRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERG 120
Query: 136 LAYGLVSS 143
A GL+S+
Sbjct: 121 RALGLLSA 128
Score = 40.5 bits (95), Expect = 1e-04
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 77
L+ + L FA+ L + + L+ GL++G+ G L + L+G LSD
Sbjct: 207 LLLALLLFGFAFFALLTYLPLYQEVL--GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL 264
Query: 78 GRK------LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE 131
GR+ L LLI + + L W A++ + + F + A V+D+ +
Sbjct: 265 GRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPK 324
Query: 132 HERSLAYGLVSS 143
ER A GL ++
Sbjct: 325 EERGTASGLYNT 336
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 43.5 bits (103), Expect = 2e-05
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLW 77
+ FL GLL+ + + + GLI+ L + L G LSD +
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRF 61
Query: 78 GRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISISGVF-AVTFSVVFAYVADVTEEHER 134
GR+ LL+ + + L L+ + W + G+ + A +A+ ER
Sbjct: 62 GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121
Query: 135 SLAYGLVSS 143
A GL S+
Sbjct: 122 GRALGLFSA 130
Score = 38.1 bits (89), Expect = 0.001
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 5/135 (3%)
Query: 13 PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 72
+ + FL F + L + L + GL++ + G L A L G
Sbjct: 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-GLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 73 LSDLWGRKLFLLITVFVT----CLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADV 128
LSD GR+ LL+ + L + L A++ + F + +++
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 129 TEEHERSLAYGLVSS 143
R A GL ++
Sbjct: 294 APPEARGTASGLFNT 308
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 40.7 bits (96), Expect = 6e-05
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT--WWFFAMISI 110
GL++ + +PL G L+D +GRK LL+ +F+ L + L + +
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 111 SGVFAVTFSV-VFAYVADVTEEHERSLAYGLVSS 143
G A V A +AD+ ER +A GL+S+
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSA 94
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 34.6 bits (80), Expect = 0.014
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRK-----LFLLITVFVTCLPIPLMTLDTWW---- 103
G I G L L AP++G ++D G + F I + T L +
Sbjct: 61 GYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLL 120
Query: 104 FFAMISISGVFAVTF 118
F + SI F+ F
Sbjct: 121 FLILASIGFEFSNVF 135
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 34.6 bits (80), Expect = 0.018
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 30 GLLTMPIISVLNRTFPDHTFLMNG----LIMGIKGFLSFLSAPLIGALSDLWGRKLFLLI 85
T +I+ T+ T ++ L++ + L F++ PL GALSD GR+ L+I
Sbjct: 231 TTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLII 290
Query: 86 -TVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVA 126
TV L +PL A++ F V+ +
Sbjct: 291 FTVLAALLAVPL-------LMALLDSGSFTLFFFLVLGMALI 325
Score = 26.9 bits (60), Expect = 6.3
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGF-LSFLSAPL----IGALSDLW 77
+E+F + L + V + FP + L+ F FL+ PL G D
Sbjct: 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI 62
Query: 78 GRKLFLLITVFVTCLP 93
GRK L+IT+ + +
Sbjct: 63 GRKKTLVITLLMMGIG 78
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 33.8 bits (78), Expect = 0.034
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 64 FLSAPLIGALSDLWGRKLFLLITVFVTCLP--IPLMTLDTWWFFAMISISGVFAVTFSVV 121
L + + G LSD +GRK LL++ VT + + + + F + G+ V
Sbjct: 141 LLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQ 200
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 32.2 bits (74), Expect = 0.087
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMIS--I 110
G ++ L APL+ L+ R+ LL + + + L L + +++ +
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110
Query: 111 SGV-FAVTFSVVFAYVADVTEEHERSLAYGLV 141
+G+ V +S+ A A + +R A LV
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALV 142
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 31.8 bits (72), Expect = 0.14
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAM 107
+ +GL+ I S +++P G L+D GRK+ LL + + + LM L + W F +
Sbjct: 54 MWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLIL 113
Query: 108 ISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSS 143
++ G+ A +A ++ A G +S+
Sbjct: 114 RALLGLLGGFVPNANALIATQVPRNKSGWALGTLST 149
Score = 30.7 bits (69), Expect = 0.37
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 50 LMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVFVTCLPIPLMTLDTWWFFAMI 108
++G+I + G + LSAP +G L D G K+ + +F L IP+ + T ++
Sbjct: 258 FISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 31.0 bits (71), Expect = 0.26
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRK----LFLLITVFVTCLPIPLMTLDTWWFFAMI 108
+++ I + L APL L+ +G+K L +L+ L L W F ++
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 109 SISGV-FAVTFSVVFAYVADVTEEHE 133
++G+ + + +A +ADV + E
Sbjct: 320 VLAGIGLGLATLLPWAMLADVVDYGE 345
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 30.3 bits (69), Expect = 0.51
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 55 IMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVF---VTCLPIPLMTLDTWWFFAMISIS 111
+ I + L L +GRK+ + + L + +I ++
Sbjct: 262 MGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILA 321
Query: 112 GVF-AVTFSVVFAYVADVTE 130
G +V+A VAD +
Sbjct: 322 GFGQNFVTGLVWALVADTVD 341
>gnl|CDD|227733 COG5446, COG5446, Predicted integral membrane protein [Function
unknown].
Length = 233
Score = 28.7 bits (64), Expect = 1.3
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 52 NGLIMGIKGFLSFLSAPLIG--------ALSDLWGRKLFLLITVFVTCLPIPLMTLDTWW 103
GL G+ GF + AP +G +DL R+++ + TV T L I L+
Sbjct: 106 QGLFWGLAGFAAVALAPALGLPPELPAMPAADLAQRQIWWIATVAATALGIALLAFRHEL 165
Query: 104 FFAMISI 110
+ ++ +
Sbjct: 166 WAKLLGL 172
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 28.6 bits (64), Expect = 1.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 55 IMGIKGFLSFLSAPLIGALSDLWGRKLFLLI-TVFVTCLPIPLMTL 99
IM F+ L PLIGALSD GR+ +L +P+++
Sbjct: 284 IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA 329
>gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional.
Length = 438
Score = 28.5 bits (64), Expect = 2.0
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 31 LLTMPII-------SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFL 83
LLTM I+ S N P FL GL++G LS L+ P L+D +GR+
Sbjct: 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGG---LSCLTIPCFAWLADRFGRR--- 316
Query: 84 LITVFVTCLPIPLMTLDTWWFF-AMISISGVFAVTFSVVFAYVA 126
V++T I TL + FF A+ + S + V FS++ A +A
Sbjct: 317 --RVYITGALIG--TLSAFPFFMALEAQSIFWIVFFSIMLANIA 356
>gnl|CDD|188223 TIGR02458, CbtA, cobalt transporter subunit CbtA (proposed). This
model represents a family of proteins which have been
proposed to act as cobalt transporters acting in concert
with vitamin B12 biosynthesis systems. Evidence for this
assignment includes 1) prediction of five trans-membrane
segments, 2) positional gene linkage with known B12
biosynthesis genes, 3) upstream proximity of B12
transcriptional regulatory sites, 4) the absence of
other known cobalt import systems and 5) the obligate
co-localization with a small protein (CbtB) having a
single additional trans-membrane segment and a
C-terminal histidine-rich motif likely to be a
metal-binding site.
Length = 225
Score = 27.8 bits (62), Expect = 2.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 52 NGLIMGIKGFLSFLSAPLIG--------ALSDLWGRKLFLLITVFVTCLPIPLMTL 99
GL+ G+ GF +F AP +G +DL R+++ + TV T + + L+
Sbjct: 105 QGLLWGLAGFAAFHLAPGLGLPPELPGMPAADLTARQIWWIATVAATGIGLYLIAF 160
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 28.0 bits (63), Expect = 2.4
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISG 112
GLI+ I + + G L D +GRK LLI + + L F M+ I G
Sbjct: 49 GLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYML-IVG 107
Query: 113 VFAVTFSVVFAYVA 126
V V V
Sbjct: 108 RVIVGLGVGGISVL 121
>gnl|CDD|193296 pfam12821, DUF3815, Protein of unknown function (DUF3815). This
family of membrane proteins is functionally
uncharacterized.
Length = 130
Score = 27.1 bits (61), Expect = 3.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 49 FLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLM 97
L+ L + + SFL+A IG LS+++ R L +TVF+ IPL+
Sbjct: 39 LLLLHLGVSL-ALASFLAALAIGLLSEIFARILKAPVTVFLVPGIIPLV 86
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 27.7 bits (62), Expect = 3.5
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 45 PDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTC-----LPIPLMTL 99
DH FL++ ++ + +F++ L+ D +GR+ LLI L I +
Sbjct: 318 TDHAFLVSIIVGAVNFAFTFVAIFLV----DRFGRRPLLLIGAAGMAICLFVLGILGASF 373
Query: 100 DTWWFFAMISISGVFAVTFSVVFA 123
T + +++ VF + F FA
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFA 397
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 27.3 bits (61), Expect = 4.0
Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 10/101 (9%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDL---WGRKLFLLITVFVTCLPIPLM-------TLDTW 102
G + + G + F+ L G LSDL G+ L + + + +
Sbjct: 254 GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY 313
Query: 103 WFFAMISISGVFAVTFSVVFAYVADVTEEHERSLAYGLVSS 143
A++++ ++ +A ++D + L GL++S
Sbjct: 314 AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINS 354
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 27.0 bits (60), Expect = 5.1
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 30 GLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWG-RKLFLLITVF 88
G+ ++ + FPD L +G+I+G G SF+ +PLI ++ +L G F+ + +
Sbjct: 106 GIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165
Query: 89 VTCLPIPLMTL 99
+ + L
Sbjct: 166 FLLVIVLGAFL 176
>gnl|CDD|233781 TIGR02212, lolCE, lipoprotein releasing system, transmembrane
protein, LolC/E family. This model describes the LolC
protein, and its paralog LolE found in some species.
These proteins are homologous to permease proteins of
ABC transporters. In some species, two paralogs occur,
designated LolC and LolE. In others, a single form is
found and tends to be designated LolC [Protein fate,
Protein and peptide secretion and trafficking].
Length = 411
Score = 26.9 bits (60), Expect = 5.9
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 49 FLMNGLIMGIKG---------FLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL 99
F++ GL++G+ G L+ +I + L G K F F+ LP L L
Sbjct: 316 FIVQGLLIGVIGTLLGVILGVLLALNLTTIINFIEWLIGVKFFNADIYFLDFLPSKLDPL 375
Query: 100 DT 101
D
Sbjct: 376 DV 377
>gnl|CDD|226390 COG3872, COG3872, Predicted metal-dependent enzyme [General
function prediction only].
Length = 318
Score = 26.3 bits (58), Expect = 7.8
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 60 GFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFS 119
L +IG LS ++G+ +F L+ VF+ L P+ A + G F +
Sbjct: 102 KLAMILGLAVIGVLSFVFGKFVFTLVPVFLAELFSPIFPGR----VAQNLLEGFFRLILF 157
Query: 120 VVFAYVADVTEEHERSLAY 138
+ + ++ T + +R Y
Sbjct: 158 LGYIWIISFTPDIKRVFQY 176
>gnl|CDD|227127 COG4789, EscV, Type III secretory pathway, component EscV
[Intracellular trafficking and secretion].
Length = 689
Score = 26.5 bits (59), Expect = 8.1
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 81 LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTE 130
L LL+ V + LP+P + +D +I+I+ +V +V Y+
Sbjct: 19 LLLLMAVAMMILPLPTVLVD-----ILIAINLTLSVLLLMVSIYIPSPLS 63
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 26.4 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 69 LIGALSDLWGRKLFLLITV---FVTCLPI 94
L+G LSD GR+ +L V +TCL I
Sbjct: 67 LLGPLSDRIGRRPVMLAGVAFFILTCLAI 95
>gnl|CDD|182447 PRK10422, PRK10422, lipopolysaccharide core biosynthesis protein;
Provisional.
Length = 352
Score = 26.3 bits (58), Expect = 9.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 19 LVVIFLEFFAWGLLTMPIISVLNRTFPD 46
+++I + F LLT P+IS L + +PD
Sbjct: 8 ILIIKMRFHGDMLLTTPVISSLKKNYPD 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.141 0.445
Gapped
Lambda K H
0.267 0.0718 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,641,045
Number of extensions: 817615
Number of successful extensions: 1491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1457
Number of HSP's successfully gapped: 201
Length of query: 167
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 77
Effective length of database: 6,945,742
Effective search space: 534822134
Effective search space used: 534822134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)