RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16666
(167 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-05
Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 30/128 (23%)
Query: 32 LTMPIISVLNRTFPDH-----TFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLIT 86
+ II+ R + L I+ L+ L RK+F ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFDRLS 379
Query: 87 VFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEE-HERSLAYGLVSSET 145
VF IP + L W F +I V V + H+ SL +
Sbjct: 380 VFPPSAHIPTILLSLIW-FDVIKSD-------------VMVVVNKLHKYSLVEK--QPKE 423
Query: 146 NQYSSPSL 153
+ S PS+
Sbjct: 424 STISIPSI 431
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.001
Identities = 32/171 (18%), Positives = 49/171 (28%), Gaps = 56/171 (32%)
Query: 14 SVYHALVVIFLEFFAWGLLT---------------MPIISVLNR--TFPDHTFLMNGLIM 56
YH LV ++F A L + I+ L PD +L++
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS---- 233
Query: 57 GIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAV 116
+S PLIG + L VT L+ + + G
Sbjct: 234 ------IPISCPLIGVIQ---------LAHYVVTA---KLLGFTPGELRS--YLKGATGH 273
Query: 117 TFSVVFAYV---ADVTEEHERSLAY---------GLVSSETNQYSSPSLTP 155
+ +V A D + E G+ E Y + SL P
Sbjct: 274 SQGLVTAVAIAETD-SWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPP 321
Score = 33.1 bits (75), Expect = 0.044
Identities = 23/149 (15%), Positives = 42/149 (28%), Gaps = 68/149 (45%)
Query: 1 MIKNSPTSGIGEPSVYHALVVIFLEFFAWGLLTMPI---ISVLNRTFPD----HTFLMNG 53
++++S + G PS L + L + ++ N P L+NG
Sbjct: 323 ILEDSLENNEGVPS--PMLSIS-------NLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 54 ----LIMG--------------------------------IKGFLSFL--SAP-----LI 70
++ G +K FL ++P L+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 71 GA----LSDLWGRKLF-----LLITVFVT 90
A DL + + I V+ T
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Score = 29.2 bits (65), Expect = 0.65
Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 52/161 (32%)
Query: 25 EFFAWGLLTMPII------------SVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 72
++ ++ P+I +L T + + G +G ++ A I A
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT---AVAI-A 284
Query: 73 LSDLW------GRK----LFLL-----ITVFVTCLPIPLMTLD---------TWWFFAMI 108
+D W RK LF + T LP P + D + M+
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSP----ML 339
Query: 109 SISGVFAVTFSVVFAYVADVTEEH---ERSLAYGLVSSETN 146
SIS +T V YV + T H + + LV+ N
Sbjct: 340 SISN---LTQEQVQDYV-NKTNSHLPAGKQVEISLVNGAKN 376
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 37.2 bits (86), Expect = 0.001
Identities = 24/119 (20%), Positives = 33/119 (27%), Gaps = 8/119 (6%)
Query: 23 FLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGALSDLWGRKLF 82
F FF G P + + G+I S L PL G LSD G + +
Sbjct: 17 FFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY 75
Query: 83 LLITVFVTCLPIPL-------MTLDTWWFFAMISISGVFAVTFSVVFAYVADVTEEHER 134
LL + + L I F+ V E+ R
Sbjct: 76 LLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR 134
Score = 30.3 bits (68), Expect = 0.32
Identities = 12/98 (12%), Positives = 27/98 (27%), Gaps = 3/98 (3%)
Query: 53 GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTL--DTWWFFAMISI 110
G + + L+ + + G K LL+ + + I + + ++
Sbjct: 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTL 321
Query: 111 SGV-FAVTFSVVFAYVADVTEEHERSLAYGLVSSETNQ 147
F Y+ E + Y + Q
Sbjct: 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 27.9 bits (63), Expect = 1.3
Identities = 4/16 (25%), Positives = 10/16 (62%)
Query: 36 IISVLNRTFPDHTFLM 51
+I+ + +P H+F+
Sbjct: 54 LITSIKEKYPSHSFIG 69
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 36 IISVLNRTFPDHTFLM 51
IIS L FP H F+
Sbjct: 50 IISELRERFPSHRFIA 65
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 28.0 bits (63), Expect = 1.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 36 IISVLNRTFPDHTFLM 51
I + T+P+H L
Sbjct: 57 IFDTILETYPNHQVLG 72
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A
{Thermotoga maritima} PDB: 2p3v_A*
Length = 256
Score = 27.1 bits (61), Expect = 2.5
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 36 IISVLNRTFPDHTFLM 51
I+ + + FPD +
Sbjct: 49 IVDEIRKFFPDENIMA 64
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 27.1 bits (61), Expect = 2.5
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 36 IISVLNRTFPDHTFLM 51
II + +++P HT +
Sbjct: 51 IIDTIRKSYPQHTIIT 66
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 27.2 bits (61), Expect = 3.0
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 36 IISVLNRTFPDHTFLM 51
L FP+H L
Sbjct: 62 FQQFLATYFPEHQLLA 77
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 27.1 bits (61), Expect = 3.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 36 IISVLNRTFPDHTFLM 51
I V+ + FPDH +
Sbjct: 54 IKEVILKFFPDHEVVG 69
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB:
3luz_A
Length = 267
Score = 26.7 bits (60), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 36 IISVLNRTFPDHTFLM--NGLIMG 57
I + L++ P FLM + I+G
Sbjct: 57 IFNELSKARPKFGFLMEESEEIIG 80
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis}
Length = 299
Score = 26.5 bits (59), Expect = 4.2
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 36 IISVLNRTFPDHTFLM 51
+ L + P L
Sbjct: 67 LRDRLAQLRPGDPILG 82
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA;
2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Length = 352
Score = 26.5 bits (58), Expect = 4.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 MGIKGFLSFL-SAPLIGALSDLWGRKL 81
MGI+G L F+ A + G+ +
Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVV 27
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 26.4 bits (58), Expect = 5.1
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 18 ALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKG--FLS-FLSAPLIGALS 74
++ FF W + + +L F L N I+ + F+ G L
Sbjct: 27 PFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILM 85
Query: 75 DLWGRK----LFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVF 122
K L + L P + + F + G+F + +
Sbjct: 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF----LVGLFIIAAGLGC 133
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 26.3 bits (58), Expect = 5.5
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 40 LNRTFPDHTFLMNGLIMGIKG 60
L RTFP H + L G
Sbjct: 111 LGRTFPTHPYFSAQLGAGQLS 131
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 25.4 bits (56), Expect = 9.5
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 40 LNRTFPDHTFLMNGLIMGIKGFLSFLSA 67
++RTFP H + + G + A
Sbjct: 77 IHRTFPAHDYFKDTGGDGQESLYKICKA 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.445
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,524,029
Number of extensions: 136900
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 39
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.8 bits)