RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16666
         (167 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 1/110 (0%)

Query: 13  PSVYHALVVIFLEFFAWGLLTMPIISVLNRTFPDHTFLMNGLIMGIKGFLSFLSAPLIGA 72
            + +   +  F  FF  G    P   +        +    G+I       S L  PL G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAY-FPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 73  LSDLWGRKLFLLITVFVTCLPIPLMTLDTWWFFAMISISGVFAVTFSVVF 122
           LSD  G + +LL  +    +      +  +      +I     V    + 
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 28.9 bits (63), Expect = 0.33
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 53  GLIMGIKGFLSFLSAPLIGALSDLWGRKLFLLITVFVTCLPIPLMTLDT------WWFFA 106
           G  +         S  ++G++SD    ++FL   + +    +  M             F 
Sbjct: 62  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 121

Query: 107 MISISGVFA-VTFSVVFAYVADVTEEHERSLAYG 139
           ++ + G F  + +      +     + ER     
Sbjct: 122 LLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 155


>d1jp4a_ e.7.1.1 (A:) PIPase {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 304

 Score = 24.7 bits (52), Expect = 7.5
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 36 IISVLNRTFPDHTFLMNGLIM 56
          I S L+R FP  T +    + 
Sbjct: 54 ICSSLSRKFPKLTIIGEEDLP 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0541    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,307
Number of extensions: 25809
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.1 bits)