BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1667
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 180
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86
A + + ++L R K++ E+YD+E EI +L ++ DLRGKF +PTL++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRV 117
>pdb|1J1D|C Chain C, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|F Chain F, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 133
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86
A + + ++L R K++ E+YD+E EI +L ++ DLRGKF +PTL++V
Sbjct: 61 AELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRV 117
>pdb|1YTZ|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Activated State
Length = 182
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 32 VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86
+ ++ K+L + ++ E+YD E+ + E+ +L+ ++ DLRGKF +P L++V
Sbjct: 60 LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRV 114
>pdb|1YV0|I Chain I, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
Free State
Length = 137
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 32 VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86
+ ++ K+L + ++ E+YD E+ + E+ +L+ ++ DLRGKF +P L++V
Sbjct: 60 LQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRPPLRRV 114
>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1D|E Chain E, Crystal Structure Of The 46kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|B Chain B, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
pdb|1J1E|E Chain E, Crystal Structure Of The 52kda Domain Of Human Cardiac
Troponin In The Ca2+ Saturated Form
Length = 106
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 8 AERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITEL 67
AERR+V+ D N D+ + + KELW + LE+EK+DL+ F+ ++ EI L
Sbjct: 31 AERRKVLA------IDHLNEDQ--LREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL 82
Query: 68 NAQVND 73
++ND
Sbjct: 83 RNRIND 88
>pdb|2W49|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|2 Chain 2, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|5 Chain 5, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|8 Chain 8, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Z Chain Z, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 141
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 32 VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86
+ ++ K+L + ++ E+YD E+ + E+ +L+ ++ DLRGKF +P L++V
Sbjct: 58 LQELSKKLHAKIDSVDEERYDTEVKLQKTIKELEDLSQKLFDLRGKFKRPPLRRV 112
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 33.1 bits (74), Expect = 0.054, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 19 GTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 78
G+ + D + + KE+WDRA K E Y II VK EL RGK
Sbjct: 1680 GSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNP-KELTVHFGGPRGKI 1738
Query: 79 IKPTLKKVS----------KYENKFAKLQKKAAEFNFRN 107
I+ ++ K E F ++ + + + +R+
Sbjct: 1739 IRQNYMSMTFETVNADGSIKTEKIFKEVDENSTSYTYRS 1777
>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The
Ca2+- Activated State
pdb|1YV0|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The
Ca2+- Free State
Length = 107
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVN 72
KELWD ++L++EKYD + K+ EI L +++
Sbjct: 52 KELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87
>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W49|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4U|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
pdb|2W4U|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Length Step
Length = 90
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVN 72
KELWD ++L++EKYD + K+ EI L +++
Sbjct: 49 KELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 84
>pdb|4DXF|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXF|B Chain B, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4
pdb|4DXG|A Chain A, Crystal Structure Of Staphylococcal Superantigen-Like
Protein 4 Complexed With Sialyl Lewis X
Length = 204
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 65 TELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRN 107
TE+N + DLR + KP+L +++N+ + KK F N
Sbjct: 10 TEINPKFKDLRAYYTKPSL----EFKNEIGIILKKWTTIRFMN 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,298,018
Number of Sequences: 62578
Number of extensions: 101038
Number of successful extensions: 247
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 25
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)