Query psy1667
Match_columns 143
No_of_seqs 157 out of 313
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 19:00:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3977|consensus 100.0 2.9E-48 6.3E-53 312.1 9.5 140 2-141 62-207 (221)
2 PF00992 Troponin: Troponin; 100.0 3E-39 6.5E-44 245.4 2.9 111 2-113 19-132 (132)
3 KOG3634|consensus 99.5 2.1E-14 4.5E-19 123.7 8.6 74 1-75 204-278 (361)
4 COG4839 FtsL Protein required 66.4 13 0.00028 28.5 4.5 38 39-76 58-95 (120)
5 PF10044 Ret_tiss: Retinal tis 65.8 6.3 0.00014 28.9 2.6 24 24-47 55-78 (95)
6 TIGR02231 conserved hypothetic 63.0 69 0.0015 28.9 9.2 51 26-76 123-173 (525)
7 PHA03011 hypothetical protein; 60.7 45 0.00099 25.2 6.4 47 30-76 67-113 (120)
8 PF01486 K-box: K-box region; 57.5 52 0.0011 23.2 6.1 48 22-75 41-88 (100)
9 PF11544 Spc42p: Spindle pole 50.3 12 0.00027 26.5 1.9 28 51-78 8-35 (76)
10 PF10234 Cluap1: Clusterin-ass 48.8 73 0.0016 27.3 6.6 71 7-83 147-223 (267)
11 COG1340 Uncharacterized archae 47.0 78 0.0017 27.6 6.6 51 30-80 168-218 (294)
12 KOG1853|consensus 42.8 68 0.0015 28.0 5.5 47 29-75 100-146 (333)
13 PF06034 DUF919: Nucleopolyhed 40.0 75 0.0016 21.6 4.4 47 30-78 8-54 (62)
14 PF09755 DUF2046: Uncharacteri 39.2 81 0.0018 27.7 5.5 43 34-76 106-149 (310)
15 PF08581 Tup_N: Tup N-terminal 38.2 1.4E+02 0.003 20.9 6.7 32 45-76 22-53 (79)
16 KOG4196|consensus 38.1 1.7E+02 0.0037 22.9 6.6 34 45-78 78-111 (135)
17 PF10779 XhlA: Haemolysin XhlA 36.5 1.3E+02 0.0028 20.1 6.3 47 30-76 2-48 (71)
18 smart00540 LEM in nuclear memb 36.4 22 0.00049 22.5 1.3 17 23-39 2-18 (44)
19 PF04859 DUF641: Plant protein 35.7 2E+02 0.0044 22.1 7.8 63 7-76 58-122 (131)
20 PF08232 Striatin: Striatin fa 34.5 1E+02 0.0022 23.3 4.9 12 39-50 30-41 (134)
21 PRK04863 mukB cell division pr 33.9 2.5E+02 0.0054 29.6 8.8 72 18-89 426-500 (1486)
22 PRK11546 zraP zinc resistance 33.0 2.4E+02 0.0052 22.0 6.8 51 26-76 43-103 (143)
23 PF09726 Macoilin: Transmembra 32.6 86 0.0019 30.1 5.1 37 38-74 619-655 (697)
24 TIGR02929 anfG_nitrog Fe-only 32.2 47 0.001 25.1 2.6 29 15-46 66-94 (109)
25 TIGR02930 vnfG_nitrog V-contai 32.2 47 0.001 25.1 2.6 29 15-46 66-94 (109)
26 PRK04406 hypothetical protein; 31.6 1.2E+02 0.0025 21.0 4.4 30 46-75 9-38 (75)
27 PF04508 Pox_A_type_inc: Viral 30.4 46 0.001 18.5 1.8 13 63-75 2-14 (23)
28 smart00513 SAP Putative DNA-bi 29.5 50 0.0011 19.1 1.9 15 25-39 2-16 (35)
29 KOG4503|consensus 29.3 1.2E+02 0.0026 25.6 4.8 39 2-45 124-162 (230)
30 COG5085 Predicted membrane pro 29.3 1.2E+02 0.0026 25.6 4.8 39 2-45 124-162 (230)
31 PTZ00454 26S protease regulato 28.5 2.2E+02 0.0048 25.2 6.7 49 28-76 16-64 (398)
32 COG3883 Uncharacterized protei 28.5 1.3E+02 0.0028 25.8 5.0 49 32-80 57-105 (265)
33 PF03139 AnfG_VnfG: Vanadium/a 28.4 57 0.0012 24.7 2.5 24 23-46 74-97 (112)
34 PF07889 DUF1664: Protein of u 27.6 2.7E+02 0.0058 21.2 6.1 43 28-77 76-118 (126)
35 PF12329 TMF_DNA_bd: TATA elem 27.0 1.9E+02 0.0042 19.7 4.8 44 28-71 27-70 (74)
36 KOG0978|consensus 26.8 1.5E+02 0.0032 28.9 5.5 48 31-78 59-106 (698)
37 PF06698 DUF1192: Protein of u 26.2 1.1E+02 0.0024 20.5 3.4 25 23-47 17-41 (59)
38 PF09849 DUF2076: Uncharacteri 26.1 1.9E+02 0.0042 24.3 5.6 30 48-77 41-70 (247)
39 COG4942 Membrane-bound metallo 26.0 2.2E+02 0.0047 26.1 6.2 47 30-76 62-108 (420)
40 PF09006 Surfac_D-trimer: Lung 25.6 54 0.0012 21.2 1.7 13 64-76 1-13 (46)
41 COG0536 Obg Predicted GTPase [ 25.6 88 0.0019 28.1 3.6 50 3-52 290-343 (369)
42 PF11932 DUF3450: Protein of u 25.3 2.9E+02 0.0062 22.5 6.4 44 32-75 54-97 (251)
43 PF11691 DUF3288: Protein of u 25.2 72 0.0016 23.3 2.5 20 23-42 56-75 (90)
44 PF08295 Sin3_corepress: Sin3 25.2 1.3E+02 0.0029 22.0 3.9 33 37-69 54-86 (101)
45 PF12718 Tropomyosin_1: Tropom 24.8 2.9E+02 0.0062 21.1 5.9 48 30-77 17-64 (143)
46 PF02037 SAP: SAP domain; Int 24.8 49 0.0011 19.4 1.3 15 25-39 2-16 (35)
47 PRK11020 hypothetical protein; 24.4 3E+02 0.0064 21.1 5.8 42 34-76 5-52 (118)
48 PF04102 SlyX: SlyX; InterPro 23.7 2.3E+02 0.005 18.9 6.5 27 52-78 22-48 (69)
49 COG1340 Uncharacterized archae 23.7 3.1E+02 0.0068 23.9 6.5 46 30-75 44-89 (294)
50 KOG3420|consensus 23.3 60 0.0013 26.4 2.0 20 64-84 3-22 (185)
51 PRK02119 hypothetical protein; 23.1 2E+02 0.0044 19.6 4.3 24 52-75 13-36 (73)
52 PRK04863 mukB cell division pr 22.9 3.5E+02 0.0075 28.6 7.6 72 11-85 536-607 (1486)
53 PF08614 ATG16: Autophagy prot 22.9 2.3E+02 0.005 22.2 5.2 46 30-75 105-150 (194)
54 PF12718 Tropomyosin_1: Tropom 22.8 3.5E+02 0.0075 20.6 6.3 40 37-76 10-49 (143)
55 smart00338 BRLZ basic region l 22.2 2.3E+02 0.0049 18.2 5.4 36 35-70 27-62 (65)
56 KOG1655|consensus 21.4 3.3E+02 0.0072 22.8 6.0 57 41-97 19-83 (218)
57 smart00761 HDAC_interact Histo 21.0 2.6E+02 0.0057 20.6 4.8 33 37-69 55-87 (102)
58 PF02994 Transposase_22: L1 tr 20.9 2.2E+02 0.0047 25.0 5.1 60 31-90 141-200 (370)
59 PF12548 DUF3740: Sulfatase pr 20.9 60 0.0013 25.3 1.5 29 60-90 111-139 (145)
60 COG2900 SlyX Uncharacterized p 20.8 1.7E+02 0.0036 20.6 3.5 26 51-76 11-36 (72)
61 KOG0804|consensus 20.4 2.6E+02 0.0055 26.2 5.5 36 41-76 414-449 (493)
62 PRK02220 4-oxalocrotonate taut 20.1 1.8E+02 0.004 18.0 3.5 22 25-46 10-31 (61)
63 PF13991 BssS: BssS protein fa 20.1 1.3E+02 0.0029 21.0 2.9 26 26-51 41-66 (73)
No 1
>KOG3977|consensus
Probab=100.00 E-value=2.9e-48 Score=312.11 Aligned_cols=140 Identities=39% Similarity=0.561 Sum_probs=125.3
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADE-ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 80 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~-~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkK 80 (143)
|++++++||++||++|+.|||++|+++. ..|+++|++||.+|+.||+|+|||+++|.++..||++|+++||||||||+|
T Consensus 62 qq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLtikvnDLRGKFvk 141 (221)
T KOG3977|consen 62 QQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLTIKVNDLRGKFVK 141 (221)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHHHHHHHhcccccC
Confidence 6789999999999999999999999986 679999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccHHHH-HHH--hhhhhccchhhccccccccchhhhH--HhhhccccccccccCcCccc
Q psy1667 81 PTLKKVSKYENKF-AKL--QKKAAEFNFRNQLKVVKKKEFTLEE--EEKEKKPEWTKVGGDKGKEE 141 (143)
Q Consensus 81 P~LkkV~~s~~~~-~~l--~k~~~~~d~RanLK~Vkke~~~~~e--~~~~~~~dWrkn~~~~~~~~ 141 (143)
|+|||||+|+++| .++ ++|+++||||||||+|||+++..+. +++.+|||||||+++.+|-|
T Consensus 142 PtLkkVsks~~kf~ka~~~~k~~~k~DlRanLK~VKKed~~~e~~~kkk~ek~dW~K~~~~~~~mE 207 (221)
T KOG3977|consen 142 PTLKKVSKSADKFLKALLGSKHKVKMDLRANLKQVKKEDTEKERPNKKKREKGDWRKNIEPESGME 207 (221)
T ss_pred ccHHHHHhhhHHHHHHhhccchhhhHHHHHHHHHhhhhhHHHhhhhhhcccchhhhhccCccccCc
Confidence 9999999999554 444 3689999999999999999753222 23468999999999987754
No 2
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=100.00 E-value=3e-39 Score=245.44 Aligned_cols=111 Identities=41% Similarity=0.547 Sum_probs=103.1
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCc
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKP 81 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP 81 (143)
|++++++++.+||++||||+ +|||+|.++|+++|++||++|+.+|+||||+|++|.+++|||++|+++|+|++|||+||
T Consensus 19 e~~~keeek~~~L~eri~~l-~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~kv~d~rgkfkkp 97 (132)
T PF00992_consen 19 EQRKKEEEKRRYLAERIPPL-KLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKKKVNDLRGKFKKP 97 (132)
T ss_dssp HHHHHCHHHHHHHCCCTSS---GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCSHCCH
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhHHHHHcccccch
Confidence 68899999999999999998 69999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccH-HHHHHH--hhhhhccchhhcccccc
Q psy1667 82 TLKKVSKYE-NKFAKL--QKKAAEFNFRNQLKVVK 113 (143)
Q Consensus 82 ~LkkV~~s~-~~~~~l--~k~~~~~d~RanLK~Vk 113 (143)
|||+|++|+ +|..++ ++|.+++|||+|||+|+
T Consensus 98 ~lkkvkk~~~~~~~~~l~~k~~~~~~lr~~lK~vk 132 (132)
T PF00992_consen 98 TLKKVKKSADAMRRKLLGIKHKVSMDLRANLKEVK 132 (132)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCcccccHHHHHHHhhccC
Confidence 999999999 444444 47999999999999996
No 3
>KOG3634|consensus
Probab=99.54 E-value=2.1e-14 Score=123.72 Aligned_cols=74 Identities=31% Similarity=0.449 Sum_probs=64.7
Q ss_pred CcHHHHH-HHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 1 MFKERKA-AERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 1 ~E~e~k~-eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
|-+++.+ +.|..+++.|..|| +|++|.+++|++++++||++|++||.++|||+.+..+|+|+|++|+.|+.+.+
T Consensus 204 mtKeQqEdakk~~l~aiRkk~~-~~~~~~e~~LkeKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~ 278 (361)
T KOG3634|consen 204 MTKEQQEDAKKKFLLAIRKKPL-NISELPENDLKEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQ 278 (361)
T ss_pred ccHHHHHHHHHHHHHHHHhccc-ccccCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHH
Confidence 4556666 55556667777666 99999999999999999999999999999999999999999999999988764
No 4
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=66.38 E-value=13 Score=28.50 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=33.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 39 LWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 39 Lh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+..+++++..+=-||++++..+..++.+|.+.|+||..
T Consensus 58 ~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss 95 (120)
T COG4839 58 VQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSS 95 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhcc
Confidence 34567788888999999999999999999999999965
No 5
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=65.85 E-value=6.3 Score=28.89 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhh
Q psy1667 24 WTNADEATVNKILKELWDRAFKLE 47 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lE 47 (143)
++.|+.++|.+.++.||+++++|=
T Consensus 55 Ls~Lt~~~L~~~Ik~L~~~aYqLG 78 (95)
T PF10044_consen 55 LSSLTPDQLIEKIKKLQDEAYQLG 78 (95)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHh
Confidence 467788889999999999988763
No 6
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=63.01 E-value=69 Score=28.90 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 26 NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 26 ~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
..+.++|.++..-+..++..+..+.++++..+.....+|..|..++..+.|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457789999999999999999999999999999999999999999999987
No 7
>PHA03011 hypothetical protein; Provisional
Probab=60.72 E-value=45 Score=25.20 Aligned_cols=47 Identities=32% Similarity=0.391 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
++|..-..+|-+--..++.++-|++.-+..++-+|.-|+..+..|+.
T Consensus 67 deL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ 113 (120)
T PHA03011 67 DELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 45666677777777889999999999999999999999999987753
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.48 E-value=52 Score=23.19 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 22 KDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 22 ~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
.++++||..+|+.+=+.|...+..+-+-|.-+ -..+|..|+.++..|.
T Consensus 41 edL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~------l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 41 EDLESLSLKELQQLEQQLESALKRVRSRKDQL------LMEQIEELKKKERELE 88 (100)
T ss_pred ccccccchHHHHHHHHhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998776653 2345666666665553
No 9
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=50.34 E-value=12 Score=26.45 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=23.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 51 YDLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 51 YDlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
=||-.++..++.||.-|++-|..||||.
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KL 35 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKL 35 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678888999999999999999954
No 10
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.79 E-value=73 Score=27.28 Aligned_cols=71 Identities=18% Similarity=0.356 Sum_probs=54.0
Q ss_pred HHHHhHHhhhhhCCCCCCCCCCH------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q psy1667 7 AAERRRVIEQRCGTHKDWTNADE------ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 80 (143)
Q Consensus 7 ~eeKkkiLaER~~pl~~id~ls~------~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkK 80 (143)
.+.|.+.++ .|+ +++++.. ..++.-+..+-..|..|.++-=.|+.++.+...|+.-...|..-|+. +|
T Consensus 147 r~~R~~a~~---r~~-e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~--vR 220 (267)
T PF10234_consen 147 REERQRALA---RPL-ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS--VR 220 (267)
T ss_pred HHHHHHHHc---CCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 345666665 355 6665321 33455566777778899999999999999999999999999999998 78
Q ss_pred cch
Q psy1667 81 PTL 83 (143)
Q Consensus 81 P~L 83 (143)
||.
T Consensus 221 PAf 223 (267)
T PF10234_consen 221 PAF 223 (267)
T ss_pred hHH
Confidence 874
No 11
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=46.99 E-value=78 Score=27.57 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 80 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkK 80 (143)
++|...+.+||..|..|-.+==-+-..+...-.++.+++-+.+.+--+|..
T Consensus 168 ~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve 218 (294)
T COG1340 168 DELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVE 218 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777776665555555555555666666666666555544
No 12
>KOG1853|consensus
Probab=42.78 E-value=68 Score=28.04 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 29 EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 29 ~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
..++.++|..||..|..||--.=|||.--.-..|-+.|+-+|+|..-
T Consensus 100 lsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAI 146 (333)
T KOG1853|consen 100 LSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAI 146 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 35789999999999999999999999888888899999999988763
No 13
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=39.99 E-value=75 Score=21.57 Aligned_cols=47 Identities=15% Similarity=0.324 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
++|.++++-=++ -.+....|.--.++.++-.|+.++..+++++|-.|
T Consensus 8 ~QLd~I~~~K~~--l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~F 54 (62)
T PF06034_consen 8 QQLDEINQMKRQ--LTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNF 54 (62)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 445555543222 34555666777788899999999999999998765
No 14
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.21 E-value=81 Score=27.69 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHh-hHHHHHHHHHHHHHhhc
Q psy1667 34 KILKELWDRAFKLESEKYDLEIIFRV-KEAEITELNAQVNDLRG 76 (143)
Q Consensus 34 e~ckELh~~I~~lEeEKYDlE~kv~k-~~~EI~~L~~kV~DLrG 76 (143)
-+.+.|-.+|.+|-.++-+++..+.. |.|.|+-|..+|..|..
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988 88999999999999975
No 15
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.15 E-value=1.4e+02 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=27.6
Q ss_pred hhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 45 KLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 45 ~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.+...+=|++.++..+-.||+.++..|.+|--
T Consensus 22 ~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~ 53 (79)
T PF08581_consen 22 SYKHQKDEYEHKINSQIQEMQQIRQKVYELEQ 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888999999999999999999999965
No 16
>KOG4196|consensus
Probab=38.09 E-value=1.7e+02 Score=22.86 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=19.3
Q ss_pred hhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 45 KLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 45 ~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
.||.++--|...|.+-..|+..+...+.-+++||
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555655555555555544
No 17
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=36.46 E-value=1.3e+02 Score=20.09 Aligned_cols=47 Identities=19% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.++++....+..+++.++..-=.+|.....++..|..++.++.++.+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888887777777888888888889999999888765
No 18
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=36.41 E-value=22 Score=22.47 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy1667 23 DWTNADEATVNKILKEL 39 (143)
Q Consensus 23 ~id~ls~~~L~e~ckEL 39 (143)
+++.||.++|++.|.++
T Consensus 2 d~~~LSd~eL~~~L~~~ 18 (44)
T smart00540 2 DVDRLSDAELRAELKQY 18 (44)
T ss_pred chhHcCHHHHHHHHHHc
Confidence 57888999999988764
No 19
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=35.68 E-value=2e+02 Score=22.06 Aligned_cols=63 Identities=19% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHhHHhhhhhCCCCCCCCCC--HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 7 AAERRRVIEQRCGTHKDWTNAD--EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 7 ~eeKkkiLaER~~pl~~id~ls--~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.+=|+.|..-...|.|....+. .+++|.+.+.+.-.+.. |+..+...+-||..|+.++.++..
T Consensus 58 s~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~k-------Le~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 58 SELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKK-------LEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777765555443333322 35666676666666665 456688999999999999988754
No 20
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.52 E-value=1e+02 Score=23.31 Aligned_cols=12 Identities=33% Similarity=0.324 Sum_probs=5.2
Q ss_pred HHHHHHhhhhhh
Q psy1667 39 LWDRAFKLESEK 50 (143)
Q Consensus 39 Lh~~I~~lEeEK 50 (143)
|-.+|..|++|+
T Consensus 30 mkarIa~LEGE~ 41 (134)
T PF08232_consen 30 MKARIAFLEGER 41 (134)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.89 E-value=2.5e+02 Score=29.59 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=59.7
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHH---hhcCCCCcchhhhhcc
Q psy1667 18 CGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND---LRGKFIKPTLKKVSKY 89 (143)
Q Consensus 18 ~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~D---LrGKfkKP~LkkV~~s 89 (143)
...+..+++|+.++|+.....+.+++..+..+.-+++.++......+..++...+. ..|+..++....+-..
T Consensus 426 ~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~ 500 (1486)
T PRK04863 426 AKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500 (1486)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 33455778899999999999999999999999999999999999999999999777 4777666655544433
No 22
>PRK11546 zraP zinc resistance protein; Provisional
Probab=32.98 E-value=2.4e+02 Score=22.04 Aligned_cols=51 Identities=16% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCCH---HHHHHHHHHHHHHHHhhhhh----hhhHHHHHHhh--HHH-HHHHHHHHHHhhc
Q psy1667 26 NADE---ATVNKILKELWDRAFKLESE----KYDLEIIFRVK--EAE-ITELNAQVNDLRG 76 (143)
Q Consensus 26 ~ls~---~~L~e~ckELh~~I~~lEeE----KYDlE~kv~k~--~~E-I~~L~~kV~DLrG 76 (143)
.|+. +.++.+..+++.....|-.+ +++|..-+... |-+ |..|...|.||++
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~ 103 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQ 103 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3554 56788888888888777665 44554433221 112 5555555555555
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=32.56 E-value=86 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q psy1667 38 ELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 74 (143)
Q Consensus 38 ELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DL 74 (143)
+||..+...--+-=.++..+.+++.||.+|+++|.++
T Consensus 619 dLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 619 DLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 24
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=32.24 E-value=47 Score=25.07 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=22.5
Q ss_pred hhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy1667 15 EQRCGTHKDWTNADEATVNKILKELWDRAFKL 46 (143)
Q Consensus 15 aER~~pl~~id~ls~~~L~e~ckELh~~I~~l 46 (143)
.+|+ | =|..||.+++..+...||++|+-+
T Consensus 66 k~rf-p--W~~~~~kdei~~l~~~lk~rl~~l 94 (109)
T TIGR02929 66 KRRF-P--WLEDMTKDEIKTLMQALHEKMDHL 94 (109)
T ss_pred HHhC-c--HHHhCCHHHHHHHHHHHHHHHHhh
Confidence 4566 3 367888999999999999998744
No 25
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=32.15 E-value=47 Score=25.05 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=22.4
Q ss_pred hhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q psy1667 15 EQRCGTHKDWTNADEATVNKILKELWDRAFKL 46 (143)
Q Consensus 15 aER~~pl~~id~ls~~~L~e~ckELh~~I~~l 46 (143)
.+|+ | =|..||.+++..+...||++|+-+
T Consensus 66 k~rf-p--W~~~~~kdei~~l~~~lk~rl~~~ 94 (109)
T TIGR02930 66 KERF-P--WISELDKDQILELVESVKKRLVEI 94 (109)
T ss_pred HHhC-c--HHHhCCHHHHHHHHHHHHHHHHhh
Confidence 4566 3 367888899999999999998744
No 26
>PRK04406 hypothetical protein; Provisional
Probab=31.55 E-value=1.2e+02 Score=21.01 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=17.6
Q ss_pred hhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 46 LESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 46 lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
+++-=-|||.++..++.-|.+||.-|...+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq 38 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334566666666666666666665554
No 27
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=30.44 E-value=46 Score=18.53 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhh
Q psy1667 63 EITELNAQVNDLR 75 (143)
Q Consensus 63 EI~~L~~kV~DLr 75 (143)
||+.|+.+|.||-
T Consensus 2 E~~rlr~rI~dLe 14 (23)
T PF04508_consen 2 EMNRLRNRISDLE 14 (23)
T ss_pred hHHHHHHHHHHHH
Confidence 5666667776664
No 28
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=29.47 E-value=50 Score=19.08 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHH
Q psy1667 25 TNADEATVNKILKEL 39 (143)
Q Consensus 25 d~ls~~~L~e~ckEL 39 (143)
..++.++|+++|+.+
T Consensus 2 ~~l~~~~Lk~~l~~~ 16 (35)
T smart00513 2 AKLKVSELKDELKKR 16 (35)
T ss_pred CcCcHHHHHHHHHHc
Confidence 467889999999864
No 29
>KOG4503|consensus
Probab=29.27 E-value=1.2e+02 Score=25.55 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=31.6
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFK 45 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~ 45 (143)
+|.+-+.-+..||.-+|-|.+-++. |.++|.++-.-++.
T Consensus 124 ~q~q~a~ck~~Yl~n~Cd~~~rvPA-----i~E~C~kwkqcm~~ 162 (230)
T KOG4503|consen 124 IQHQIAECKTSYLINKCDPATRVPA-----IEELCSKWKQCMKN 162 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc-----HHHHHHHHHHHHhc
Confidence 3567788899999999999866665 88999988777765
No 30
>COG5085 Predicted membrane protein [Function unknown]
Probab=29.27 E-value=1.2e+02 Score=25.55 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=31.6
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFK 45 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~ 45 (143)
+|.+-+.-+..||.-+|-|.+-++. |.++|.++-.-++.
T Consensus 124 ~q~q~a~ck~~Yl~n~Cd~~~rvPA-----i~E~C~kwkqcm~~ 162 (230)
T COG5085 124 IQHQIAECKTSYLINKCDPATRVPA-----IEELCSKWKQCMKN 162 (230)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcc-----HHHHHHHHHHHHhc
Confidence 3567788899999999999866665 88999988777765
No 31
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=28.50 E-value=2.2e+02 Score=25.19 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 28 s~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
....|.+...++-..+..++...-.++.....-..+|..|+..+..|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456777777777888999999999999988889999999999999977
No 32
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.50 E-value=1.3e+02 Score=25.79 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q psy1667 32 VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIK 80 (143)
Q Consensus 32 L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkK 80 (143)
|...+.++...++.++++-=-+...+++...+|.+|+.+|.+..-.|++
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555556667777777888888888777765543
No 33
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=28.43 E-value=57 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=19.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Q psy1667 23 DWTNADEATVNKILKELWDRAFKL 46 (143)
Q Consensus 23 ~id~ls~~~L~e~ckELh~~I~~l 46 (143)
=|..||.++++.+...||++|+-+
T Consensus 74 W~~~~~k~ei~~lm~~lk~rld~l 97 (112)
T PF03139_consen 74 WINEMSKDEIKSLMQGLKERLDYL 97 (112)
T ss_pred HHHHCCHHHHHHHHHHHHHHHhHh
Confidence 367888899999999999998744
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.57 E-value=2.7e+02 Score=21.24 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcC
Q psy1667 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGK 77 (143)
Q Consensus 28 s~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGK 77 (143)
+.++..++.+.+-+.+ ..+-..+..-..+|..++..|..|.||
T Consensus 76 klDe~~ei~~~i~~eV-------~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEV-------TEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 333334444455555555555555553
No 35
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.03 E-value=1.9e+02 Score=19.71 Aligned_cols=44 Identities=23% Similarity=0.328 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHH
Q psy1667 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQV 71 (143)
Q Consensus 28 s~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV 71 (143)
.+..+....+.|-..+..++..-=++..++.....+|..|+.+.
T Consensus 27 ~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 27 KELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777666666666666666666666553
No 36
>KOG0978|consensus
Probab=26.83 E-value=1.5e+02 Score=28.88 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
.||.+|-.||.....+.+.-+.+-.++.-..++..+|...+-|+++=|
T Consensus 59 ~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~ 106 (698)
T KOG0978|consen 59 KLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADL 106 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHH
Confidence 489999999999999999999999999999999999999999999844
No 37
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.18 E-value=1.1e+02 Score=20.52 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhh
Q psy1667 23 DWTNADEATVNKILKELWDRAFKLE 47 (143)
Q Consensus 23 ~id~ls~~~L~e~ckELh~~I~~lE 47 (143)
+++.||.++|.+-.--|-.-|..++
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~ 41 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLE 41 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHH
Confidence 5788888887766555555554444
No 38
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=26.13 E-value=1.9e+02 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=25.5
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHhhcC
Q psy1667 48 SEKYDLEIIFRVKEAEITELNAQVNDLRGK 77 (143)
Q Consensus 48 eEKYDlE~kv~k~~~EI~~L~~kV~DLrGK 77 (143)
.--|=|-..|--|+.=|+.++.||.+|...
T Consensus 41 ~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~q 70 (247)
T PF09849_consen 41 DAPYYLAQTVLVQEQALKQAQARIQELEAQ 70 (247)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999999999774
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.01 E-value=2.2e+02 Score=26.08 Aligned_cols=47 Identities=28% Similarity=0.288 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
++|+.-.+++-..|..++.+.-..+..+.+....|.+++.+++.|.+
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 45666677777888888888888888888889999999999888876
No 40
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.56 E-value=54 Score=21.20 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhc
Q psy1667 64 ITELNAQVNDLRG 76 (143)
Q Consensus 64 I~~L~~kV~DLrG 76 (143)
|+.|+++|..|+|
T Consensus 1 i~aLrqQv~aL~~ 13 (46)
T PF09006_consen 1 INALRQQVEALQG 13 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 6778888888888
No 41
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=25.56 E-value=88 Score=28.13 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=36.5
Q ss_pred HHHHHHHHhHHhhhhhCCCCC--CCCCCHHHHHHHHHHHHHHHHhh--hhhhhh
Q psy1667 3 KERKAAERRRVIEQRCGTHKD--WTNADEATVNKILKELWDRAFKL--ESEKYD 52 (143)
Q Consensus 3 ~e~k~eeKkkiLaER~~pl~~--id~ls~~~L~e~ckELh~~I~~l--EeEKYD 52 (143)
.++..++..++|.+.++.... |+.++.+.|.++|..+++.|... +.+.++
T Consensus 290 ~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~~~~~~~~ 343 (369)
T COG0536 290 DEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETKAEAEAAE 343 (369)
T ss_pred CHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhhhhhcccc
Confidence 356677788888876653323 88888889999999999988876 444443
No 42
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=25.33 E-value=2.9e+02 Score=22.47 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 32 VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 32 L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
|..-.+.|...+..|+...=-++.-|..+..+|..|..++.++.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444555544444455555556666666666655554
No 43
>PF11691 DUF3288: Protein of unknown function (DUF3288); InterPro: IPR021705 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.22 E-value=72 Score=23.27 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy1667 23 DWTNADEATVNKILKELWDR 42 (143)
Q Consensus 23 ~id~ls~~~L~e~ckELh~~ 42 (143)
..=||++++|-+.|+++|..
T Consensus 56 ~~W~lteeeLf~kTR~I~~~ 75 (90)
T PF11691_consen 56 QKWGLTEEELFEKTREIHAS 75 (90)
T ss_pred HHcCCCHHHHHHHHHHHHHc
Confidence 34578999999999999975
No 44
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=25.18 E-value=1.3e+02 Score=21.97 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHH
Q psy1667 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNA 69 (143)
Q Consensus 37 kELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~ 69 (143)
..+=+.|...|+|||++-..+..+..-|.-|..
T Consensus 54 nqyEE~lf~~EDeR~E~D~~ie~~~~tI~~Le~ 86 (101)
T PF08295_consen 54 NQYEEALFRCEDERFELDMLIESNRSTIKLLEE 86 (101)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 577788999999999999999988887776653
No 45
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.84 E-value=2.9e+02 Score=21.08 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcC
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGK 77 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGK 77 (143)
+++...+++|-+....++.+==+|..++..-..+|..+..++.++..+
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777777777777777777777777777777777766553
No 46
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=24.75 E-value=49 Score=19.36 Aligned_cols=15 Identities=27% Similarity=0.251 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHH
Q psy1667 25 TNADEATVNKILKEL 39 (143)
Q Consensus 25 d~ls~~~L~e~ckEL 39 (143)
+.|+..+|++.|+.+
T Consensus 2 ~~l~v~eLk~~l~~~ 16 (35)
T PF02037_consen 2 SKLTVAELKEELKER 16 (35)
T ss_dssp TTSHHHHHHHHHHHT
T ss_pred CcCcHHHHHHHHHHC
Confidence 567888999999754
No 47
>PRK11020 hypothetical protein; Provisional
Probab=24.38 E-value=3e+02 Score=21.07 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhh------hhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 34 KILKELWDRAFKLES------EKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 34 e~ckELh~~I~~lEe------EKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.=.+.|++++|.+-- .+=|- ..+.+...||..|+.+|+.|+|
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~-~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDA-EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334667777775532 22232 3466677899999999999988
No 48
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.67 E-value=2.3e+02 Score=18.87 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.1
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 52 DLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 52 DlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
.|...|..|..+|..|..++..|..++
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665543
No 49
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=23.67 E-value=3.1e+02 Score=23.90 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
++|-..++++-+.+..+-++|=-|...|..-...-+++|.+++.|+
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~ 89 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELR 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666665555555665555543
No 50
>KOG3420|consensus
Probab=23.30 E-value=60 Score=26.35 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhcCCCCcchh
Q psy1667 64 ITELNAQVNDLRGKFIKPTLK 84 (143)
Q Consensus 64 I~~L~~kV~DLrGKfkKP~Lk 84 (143)
|.+|..+.+.++| |.||.|.
T Consensus 3 ~Kel~~~L~~v~g-FeKpk~~ 22 (185)
T KOG3420|consen 3 LKELESRLQQVDG-FEKPKLL 22 (185)
T ss_pred hHHHHHHHHHhcc-ccccchh
Confidence 5688899999999 9999886
No 51
>PRK02119 hypothetical protein; Provisional
Probab=23.05 E-value=2e+02 Score=19.62 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=14.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 52 DLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 52 DlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
|||.++..++.-|.+||.-|...+
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666655444
No 52
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.88 E-value=3.5e+02 Score=28.56 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=58.0
Q ss_pred hHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhh
Q psy1667 11 RRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKK 85 (143)
Q Consensus 11 kkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~Lkk 85 (143)
.+.|++-|..+ ...--+.+.|..+..+.-..|..++++.=.+...-.......+.|.++|..|...+ |++-.
T Consensus 536 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~a--p~W~~ 607 (1486)
T PRK04863 536 ERLLAEFCKRL-GKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA--PAWLA 607 (1486)
T ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--hHHHh
Confidence 45666666533 33333689999999999999999999999998888888889999999999999955 76543
No 53
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.86 E-value=2.3e+02 Score=22.24 Aligned_cols=46 Identities=30% Similarity=0.233 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
.+|+....+....|..|..+.-.++.++...+.+|.+++.-+..|+
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666655555555555555555555444443
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=22.83 E-value=3.5e+02 Score=20.60 Aligned_cols=40 Identities=35% Similarity=0.319 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 37 kELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
-...++...+++.-=+++......+.+|..|+.++..|-.
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~ 49 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEE 49 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555556666677777777777777766655
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=22.21 E-value=2.3e+02 Score=18.23 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHH
Q psy1667 35 ILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQ 70 (143)
Q Consensus 35 ~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~k 70 (143)
...+|-..+..|+.+.-+|...+..-..+|..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777767766666666666666544
No 56
>KOG1655|consensus
Probab=21.42 E-value=3.3e+02 Score=22.81 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcch--------hhhhccHHHHHHHh
Q psy1667 41 DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL--------KKVSKYENKFAKLQ 97 (143)
Q Consensus 41 ~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~L--------kkV~~s~~~~~~l~ 97 (143)
+.|+.++.--=-++.++.+-+.+|..++.++.-.|---.+|+| |.=++|+++..+|.
T Consensus 19 dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~ 83 (218)
T KOG1655|consen 19 DAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLD 83 (218)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666556667788888889999999999888764555544 44567777777773
No 57
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=21.02 E-value=2.6e+02 Score=20.64 Aligned_cols=33 Identities=18% Similarity=0.470 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHH
Q psy1667 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNA 69 (143)
Q Consensus 37 kELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~ 69 (143)
.++=+.|..+|++||++-.-+.....-|.-|..
T Consensus 55 NqyEE~Lfr~EDeR~E~D~~ie~~~~ti~~le~ 87 (102)
T smart00761 55 NQYEEALFRCEDERFELDMVIESNSSTIKLLEE 87 (102)
T ss_pred cHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999888877766544
No 58
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.92 E-value=2.2e+02 Score=25.02 Aligned_cols=60 Identities=22% Similarity=0.334 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhhhhccH
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE 90 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~LkkV~~s~ 90 (143)
.|..-+.++=++|..+|+.--+++..+......|..|..++.||-....+..|+=|...+
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPE 200 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPE 200 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES---
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCC
Confidence 456667788888888888888888888888889999999999998877888888777765
No 59
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=20.90 E-value=60 Score=25.29 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCCcchhhhhccH
Q psy1667 60 KEAEITELNAQVNDLRGKFIKPTLKKVSKYE 90 (143)
Q Consensus 60 ~~~EI~~L~~kV~DLrGKfkKP~LkkV~~s~ 90 (143)
-+.+|..|+.+|..|+. .|-.||+.|-.+
T Consensus 111 ID~eIe~Lq~Ki~~LKe--iR~hLk~~RP~~ 139 (145)
T PF12548_consen 111 IDHEIETLQDKIKNLKE--IRGHLKKKRPEE 139 (145)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhCchh
Confidence 35789999999999988 677888877655
No 60
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.75 E-value=1.7e+02 Score=20.58 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.7
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 51 YDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 51 YDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
-+||.++..|..-|.+||..|...+-
T Consensus 11 ~eLE~r~AfQE~tieeLn~~laEq~~ 36 (72)
T COG2900 11 IELEIRLAFQEQTIEELNDALAEQQL 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998877764
No 61
>KOG0804|consensus
Probab=20.36 E-value=2.6e+02 Score=26.17 Aligned_cols=36 Identities=25% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 41 DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 41 ~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
-|+.+|.+..=-...-+...+..|++|..+|.||.=
T Consensus 414 vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 414 VWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 344444444444445555677888999999988864
No 62
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=20.15 E-value=1.8e+02 Score=17.95 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q psy1667 25 TNADEATVNKILKELWDRAFKL 46 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~l 46 (143)
.|.|.++.+++++.+++.+...
T Consensus 10 ~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 10 EGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999987643
No 63
>PF13991 BssS: BssS protein family
Probab=20.15 E-value=1.3e+02 Score=21.05 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhh
Q psy1667 26 NADEATVNKILKELWDRAFKLESEKY 51 (143)
Q Consensus 26 ~ls~~~L~e~ckELh~~I~~lEeEKY 51 (143)
.|..+..+.+.-.|+..|+++|+.-|
T Consensus 41 ~lT~e~Ar~Li~~L~~~I~kiE~se~ 66 (73)
T PF13991_consen 41 WLTTEMARQLISILEAGIDKIESSEY 66 (73)
T ss_pred EecHHHHHHHHHHHHHHHHHHHhCCc
Confidence 46678899999999999999998755
Done!