Query psy1667
Match_columns 143
No_of_seqs 157 out of 313
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 19:00:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1j1e_C Troponin I, TNI; THIN f 100.0 2.4E-58 8.1E-63 365.2 9.9 135 2-140 34-171 (180)
2 1ytz_I Troponin I; muscle, THI 100.0 4.1E-57 1.4E-61 358.6 8.7 134 2-140 32-170 (182)
3 1j1d_C Troponin I, TNI; THIN f 100.0 1.8E-41 6E-46 257.9 11.0 94 2-96 34-128 (133)
4 1ytz_T Troponin T; muscle, THI 100.0 2.2E-32 7.5E-37 201.3 9.1 78 4-83 19-97 (107)
5 1j1d_B Troponin T, TNT; THIN f 100.0 2.1E-32 7.2E-37 201.1 4.1 75 7-83 23-97 (106)
6 3bas_A Myosin heavy chain, str 85.0 1.9 6.7E-05 29.5 5.4 53 17-70 2-57 (89)
7 1hjb_A Ccaat/enhancer binding 77.2 5.1 0.00017 27.8 5.3 50 33-82 35-84 (87)
8 4etp_A Kinesin-like protein KA 73.9 8 0.00027 32.9 6.7 56 30-85 13-73 (403)
9 3qh9_A Liprin-beta-2; coiled-c 72.9 2.5 8.6E-05 29.3 2.7 36 36-71 28-63 (81)
10 1a2x_B Troponin I; muscle cont 67.5 0.95 3.2E-05 28.3 -0.3 16 2-17 32-47 (47)
11 1l8d_A DNA double-strand break 66.4 23 0.00078 24.1 6.7 58 16-75 48-105 (112)
12 3u06_A Protein claret segregat 65.8 17 0.00058 31.1 7.1 55 30-84 13-72 (412)
13 2fxo_A Myosin heavy chain, car 65.6 28 0.00096 24.9 7.3 49 28-76 77-125 (129)
14 3nmd_A CGMP dependent protein 65.2 28 0.00097 23.4 7.3 54 23-76 14-68 (72)
15 1nkp_A C-MYC, MYC proto-oncoge 62.9 32 0.0011 23.2 7.0 49 25-76 39-87 (88)
16 2q6q_A Spindle POLE BODY compo 60.1 4.4 0.00015 27.4 1.9 30 51-80 6-35 (74)
17 3efg_A Protein SLYX homolog; x 56.2 33 0.0011 23.0 5.8 53 27-79 7-59 (78)
18 3o0z_A RHO-associated protein 49.4 50 0.0017 25.4 6.5 48 30-77 44-105 (168)
19 1nlw_A MAD protein, MAX dimeri 48.5 57 0.0019 21.6 6.4 68 3-73 10-79 (80)
20 2l5g_B Putative uncharacterize 47.0 19 0.00065 22.0 3.1 26 52-77 6-31 (42)
21 2oqq_A Transcription factor HY 47.0 26 0.00088 21.4 3.6 18 30-47 6-23 (42)
22 3hnw_A Uncharacterized protein 42.4 83 0.0028 23.0 6.6 46 31-76 72-117 (138)
23 1lwu_C Fibrinogen gamma chain; 42.2 63 0.0022 27.0 6.6 53 31-83 9-61 (323)
24 1nkp_B MAX protein, MYC proto- 41.4 72 0.0025 20.8 6.0 49 25-76 34-82 (83)
25 1zxa_A CGMP-dependent protein 39.8 43 0.0015 22.1 4.2 37 43-79 20-56 (67)
26 1ci6_A Transcription factor AT 39.6 71 0.0024 20.2 5.8 41 33-73 22-62 (63)
27 3aji_B S6C, proteasome (prosom 37.9 48 0.0017 21.0 4.2 31 8-38 4-46 (83)
28 2fxo_A Myosin heavy chain, car 37.6 1.1E+02 0.0037 21.7 6.7 46 31-76 17-62 (129)
29 3s9g_A Protein hexim1; cyclin 37.6 1.1E+02 0.0036 21.9 6.2 32 24-55 27-58 (104)
30 1jnm_A Proto-oncogene C-JUN; B 37.4 35 0.0012 21.4 3.4 36 34-76 22-57 (62)
31 2krk_A 26S protease regulatory 35.8 37 0.0013 22.3 3.5 32 8-39 14-57 (86)
32 2akf_A Coronin-1A; coiled coil 33.2 41 0.0014 19.2 2.8 19 30-48 9-27 (32)
33 1t2k_D Cyclic-AMP-dependent tr 32.9 89 0.003 19.3 5.7 35 35-69 23-57 (61)
34 3qh9_A Liprin-beta-2; coiled-c 32.8 1.2E+02 0.0041 20.8 6.2 54 43-97 4-60 (81)
35 1lq7_A Alpha3W; three helix bu 30.6 1.1E+02 0.0038 19.7 5.7 57 7-65 7-65 (67)
36 3c9i_A Tail needle protein GP2 30.3 1.4E+02 0.0049 24.0 6.5 39 38-76 95-133 (242)
37 2a1j_A DNA repair endonuclease 30.3 26 0.00088 22.0 1.8 35 10-44 16-56 (63)
38 1v63_A Nucleolar transcription 29.1 57 0.0019 22.1 3.6 42 23-64 28-69 (101)
39 3na7_A HP0958; flagellar bioge 29.1 1.3E+02 0.0045 23.4 6.2 51 28-78 33-83 (256)
40 3efg_A Protein SLYX homolog; x 28.7 62 0.0021 21.5 3.6 30 47-76 13-42 (78)
41 2wq1_A General control protein 28.5 73 0.0025 18.4 3.4 21 39-59 5-25 (33)
42 3kp1_E D-ornithine aminomutase 27.8 49 0.0017 24.3 3.2 28 14-44 7-34 (121)
43 3oa7_A Head morphogenesis prot 26.4 2.4E+02 0.0083 22.3 7.6 66 9-79 10-75 (206)
44 1x4t_A Hypothetical protein LO 26.2 93 0.0032 21.8 4.3 34 33-74 31-64 (92)
45 2xdj_A Uncharacterized protein 26.2 1.5E+02 0.0052 19.9 5.3 38 37-74 23-60 (83)
46 1jnm_A Proto-oncogene C-JUN; B 26.1 94 0.0032 19.3 4.0 24 53-76 27-50 (62)
47 3cvf_A Homer-3, homer protein 25.8 66 0.0023 21.8 3.4 46 31-76 3-48 (79)
48 3vp9_A General transcriptional 24.8 74 0.0025 22.2 3.5 28 49-76 36-64 (92)
49 3kw6_A 26S protease regulatory 24.2 80 0.0027 19.7 3.5 32 8-39 6-49 (78)
50 1fzc_C Fibrin; blood coagulati 23.9 35 0.0012 28.5 2.0 43 41-83 11-53 (319)
51 1he1_A Exoenzyme S, EXOS; sign 23.8 53 0.0018 24.6 2.7 34 24-57 101-134 (135)
52 3ghg_C Fibrinogen gamma chain; 22.4 1.2E+02 0.004 26.3 5.1 48 39-86 96-143 (411)
53 2dzn_B 26S protease regulatory 22.3 55 0.0019 20.9 2.4 14 25-38 30-43 (82)
54 1r4t_A Exoenzyme S; EXOS, GAP, 22.3 60 0.0021 24.7 2.8 36 24-59 103-138 (153)
55 1m1j_C Fibrinogen gamma chain; 22.0 2.3E+02 0.008 24.2 6.9 46 41-86 98-143 (409)
56 2w6b_A RHO guanine nucleotide 22.0 1.5E+02 0.0052 18.9 4.3 31 30-60 17-50 (56)
No 1
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=2.4e-58 Score=365.21 Aligned_cols=135 Identities=27% Similarity=0.436 Sum_probs=80.7
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCc
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKP 81 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP 81 (143)
|+++++++|++||+|||||| ||||||+++|+++|++||+||++||+||||||++|.+++|||++||++||||+|||+||
T Consensus 34 E~e~k~eEKkkiLaER~kPL-nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKFkKP 112 (180)
T 1j1e_C 34 EAEERRGEKGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRP 112 (180)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhccccc
Confidence 68999999999999999887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccHH-HHHH-H-hhhhhccchhhccccccccchhhhHHhhhccccccccccCcCcc
Q psy1667 82 TLKKVSKYEN-KFAK-L-QKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKE 140 (143)
Q Consensus 82 ~LkkV~~s~~-~~~~-l-~k~~~~~d~RanLK~Vkke~~~~~e~~~~~~~dWrkn~~~~~~~ 140 (143)
+|||||+||+ |+.+ | ++|+++||||||||+|||++. ++++++||||||||++++|=
T Consensus 113 ~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke~~---e~~~~~~~dWrkn~e~~~gm 171 (180)
T 1j1e_C 113 TLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDT---EKENREVGDWRKNIDALSGM 171 (180)
T ss_dssp ----CCCCHHHHHHHHHSCC------------------------------------------
T ss_pred chhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccccc---cccccccchHHHHHHHhcCc
Confidence 9999999994 4444 5 478999999999999999873 34456899999999999873
No 2
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=100.00 E-value=4.1e-57 Score=358.55 Aligned_cols=134 Identities=25% Similarity=0.418 Sum_probs=103.9
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCc
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKP 81 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP 81 (143)
|+++++++|++||+|||||| |||| |+++|+++|++||+||++||+|||||+++|.+++|||++||++||||+|||+||
T Consensus 32 E~e~k~eeKkkiLaER~kPL-nid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLrGKfkKP 109 (182)
T 1ytz_I 32 EAAAKEVEKQNYLAEHSPPL-SLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLRGKFKRP 109 (182)
T ss_dssp HHHHHHHHHHHHHHHHSCCC-CCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGTCSCSSC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Confidence 68899999999999999887 9999 999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccH-HHHHHH-h-hhhhccchhhccccccccchhhhHHhhh--ccccccccccCcCcc
Q psy1667 82 TLKKVSKYE-NKFAKL-Q-KKAAEFNFRNQLKVVKKKEFTLEEEEKE--KKPEWTKVGGDKGKE 140 (143)
Q Consensus 82 ~LkkV~~s~-~~~~~l-~-k~~~~~d~RanLK~Vkke~~~~~e~~~~--~~~dWrkn~~~~~~~ 140 (143)
+|||||+|| +|+.+| + +|+++||||||||+|||++. +++++ +||||||||++++|=
T Consensus 110 ~LkkV~~sad~m~kallg~k~k~~~d~RanLK~Vkke~~---e~~~~~~~~~dWrkn~e~~~gm 170 (182)
T 1ytz_I 110 PLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKEDT---EKEKDLRDVGDWRKNIEEKSGM 170 (182)
T ss_dssp SSCCCCCCHHHHHHHHHTTCCCCCCSSCCCCCCC------------------------------
T ss_pred chhhccccHhHHHHHHhCCCchhhhhHHHhccccccchh---hhhhhhcccccHHHHHHhhcCc
Confidence 999999999 556654 4 78999999999999999873 23444 899999999999873
No 3
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=100.00 E-value=1.8e-41 Score=257.91 Aligned_cols=94 Identities=28% Similarity=0.451 Sum_probs=81.7
Q ss_pred cHHHHHHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCc
Q psy1667 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKP 81 (143)
Q Consensus 2 E~e~k~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP 81 (143)
|+++++++|++||+|||||| ||||||+++|+++|++||+||++||+||||||++|.+++|||++||++||||+|||+||
T Consensus 34 E~e~k~eeKkkiLaER~~pL-~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~gKfkKP 112 (133)
T 1j1d_C 34 EAEERRGEKGRALSTRAQPL-ELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRP 112 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHcccCCC
Confidence 68999999999999999887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccH-HHHHHH
Q psy1667 82 TLKKVSKYE-NKFAKL 96 (143)
Q Consensus 82 ~LkkV~~s~-~~~~~l 96 (143)
+|||||||| +|+.+|
T Consensus 113 ~LkkVr~sad~ml~al 128 (133)
T 1j1d_C 113 TLRRVRISADAMMQAL 128 (133)
T ss_dssp --CCCCCCHHHHHHHH
T ss_pred ccCccccCHHHHHHHH
Confidence 999999999 555554
No 4
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=99.97 E-value=2.2e-32 Score=201.27 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.4
Q ss_pred HHHH-HHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcc
Q psy1667 4 ERKA-AERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPT 82 (143)
Q Consensus 4 e~k~-eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~ 82 (143)
++.+ ++|++||+|||+|| ||||||+++|+++|++||++|++||+||||||++|.+++|||++||+||+|| |||+||+
T Consensus 19 ~q~e~EeKkkiLaER~~pL-~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gKfkKp~ 96 (107)
T 1ytz_T 19 KQTARETKKKVLAERRKPL-NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA-QKHSKKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHTCCCC-CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCC---
T ss_pred HHHHHHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh-cCccCCC
Confidence 4455 57999999999887 9999999999999999999999999999999999999999999999999999 9999999
Q ss_pred h
Q psy1667 83 L 83 (143)
Q Consensus 83 L 83 (143)
.
T Consensus 97 ~ 97 (107)
T 1ytz_T 97 G 97 (107)
T ss_dssp -
T ss_pred C
Confidence 7
No 5
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=99.97 E-value=2.1e-32 Score=201.10 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=65.5
Q ss_pred HHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcch
Q psy1667 7 AAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL 83 (143)
Q Consensus 7 ~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~L 83 (143)
+++|++||+|||+|| ||||||+++|+++|++||++|++||+||||||++|.+++|||++||++|+|| |||+||+-
T Consensus 23 reeKkkiLaER~kpL-~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl-gKf~Kp~~ 97 (106)
T 1j1d_B 23 REKKKKILAERRKVL-AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN-QKVSKTRG 97 (106)
T ss_dssp HHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh-cCccCCCC
Confidence 389999999999887 9999999999999999999999999999999999999999999999999999 99999985
No 6
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.96 E-value=1.9 Score=29.52 Aligned_cols=53 Identities=15% Similarity=-0.007 Sum_probs=36.5
Q ss_pred hhCCCCCCCCCCHHH---HHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHH
Q psy1667 17 RCGTHKDWTNADEAT---VNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQ 70 (143)
Q Consensus 17 R~~pl~~id~ls~~~---L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~k 70 (143)
+++||+++.. ++.+ +.+-++.+-..+...+..+.+|+.+...-..+.++|..+
T Consensus 2 kVKPLL~~~~-~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 2 SHMPLLSIAR-QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678866543 4444 455667778889999999999999999999999999888
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.20 E-value=5.1 Score=27.77 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcc
Q psy1667 33 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPT 82 (143)
Q Consensus 33 ~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~ 82 (143)
+....+++.++..|+.+.-.|...|..-..|+..|+.-+.++.|-|.+|+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~~~~ 84 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASS 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHhccc
Confidence 44567889999999999999999999999999999999999999777664
No 8
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.86 E-value=8 Score=32.94 Aligned_cols=56 Identities=25% Similarity=0.386 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC-----CCcchhh
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF-----IKPTLKK 85 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf-----kKP~Lkk 85 (143)
..|++.+.+|-..|..++.+.-++..++......-..|.+.++||+|.+ .||.+..
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~ 73 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKN 73 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCc
Confidence 5688889999999999999999999999999999999999999999986 6887765
No 9
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=72.91 E-value=2.5 Score=29.30 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHH
Q psy1667 36 LKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQV 71 (143)
Q Consensus 36 ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV 71 (143)
.++|--++..+|+||--.|-+++-.+-||..|..++
T Consensus 28 i~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 28 LRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355566666666666666666666666666666554
No 10
>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1
Probab=67.46 E-value=0.95 Score=28.33 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=1.2
Q ss_pred cHHHHHHHHhHHhhhh
Q psy1667 2 FKERKAAERRRVIEQR 17 (143)
Q Consensus 2 E~e~k~eeKkkiLaER 17 (143)
|+++++++|++||+||
T Consensus 32 E~~~k~~eK~~~L~Er 47 (47)
T 1a2x_B 32 EEGRREAEKQNYLAEH 47 (47)
T ss_dssp TC--------------
T ss_pred HHHHHHHHHHHHHhcC
Confidence 5678999999999986
No 11
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=66.39 E-value=23 Score=24.13 Aligned_cols=58 Identities=10% Similarity=0.073 Sum_probs=44.5
Q ss_pred hhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q psy1667 16 QRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR 75 (143)
Q Consensus 16 ER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr 75 (143)
..| |+ .=+.++..........+...|..+..+-.++...+..-+.+|..|+.++.|+-
T Consensus 48 ~~C-Pv-Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 105 (112)
T 1l8d_A 48 GKC-PV-CGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKRLT 105 (112)
T ss_dssp EEC-TT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCC-CC-CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368 55 34556776667778888888888888888888888888888888888887443
No 12
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=65.77 E-value=17 Score=31.13 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC-----CCcchh
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF-----IKPTLK 84 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf-----kKP~Lk 84 (143)
.+|++.+.+|-..|..+.++.-.+...+.+.+.+-..|.+.|.||+|.+ .||.+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~ 72 (412)
T 3u06_A 13 VHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLE 72 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCc
Confidence 6788899999999999999999999999998899999999999999976 577654
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.58 E-value=28 Score=24.89 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 28 s~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
...+|...+.+|..++...++..-+|...-++-..+|.+|...+.|+-+
T Consensus 77 ~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 77 NKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888888888888899999999988865
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=65.20 E-value=28 Score=23.37 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=39.2
Q ss_pred CCCCCC-HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 23 DWTNAD-EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 23 ~id~ls-~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+|.|++ ..+|+...++--+.|...|+-==+++..+...+.+|..|+..+..++.
T Consensus 14 ~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 14 SIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456655 477777777777777777777778888899999999999998887776
No 15
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=62.91 E-value=32 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 25 TNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
..+|-..+-..|- +.|..|....-.+...+.....+...|..++..|+|
T Consensus 39 ~K~sK~~iL~~A~---~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 39 EKAPKVVILKKAT---AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp TTCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566655544444 567777777777777777788889999999999987
No 16
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=60.10 E-value=4.4 Score=27.45 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.8
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q psy1667 51 YDLEIIFRVKEAEITELNAQVNDLRGKFIK 80 (143)
Q Consensus 51 YDlE~kv~k~~~EI~~L~~kV~DLrGKfkK 80 (143)
-||..++..+..||..||.=|-.||||..|
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~KLiK 35 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSKLEK 35 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888899999999999999996543
No 17
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.21 E-value=33 Score=22.96 Aligned_cols=53 Identities=13% Similarity=-0.007 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCC
Q psy1667 27 ADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFI 79 (143)
Q Consensus 27 ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfk 79 (143)
++.++|.+-..+|=-+|.-.|.-==+|...|..|..+|..|..++.-|.+++.
T Consensus 7 ~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 7 PRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666667777888888888888888888877664
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.37 E-value=50 Score=25.40 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHH--------------hhHHHHHHHHHHHHHhhcC
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFR--------------VKEAEITELNAQVNDLRGK 77 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~--------------k~~~EI~~L~~kV~DLrGK 77 (143)
+.+...|++|.+++..|+..+-.|+.-+. +..--|.+|.-||.-|.+-
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~E 105 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEE 105 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888877773 3334466666677666663
No 19
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=48.46 E-value=57 Score=21.65 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=38.1
Q ss_pred HHHHHHHHhHH--hhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q psy1667 3 KERKAAERRRV--IEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND 73 (143)
Q Consensus 3 ~e~k~eeKkki--LaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~D 73 (143)
..++..-+..| |..-+|.+++-+-+|--.+-..|. +.|..|.++--.+.........++..|+.++..
T Consensus 10 R~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~---~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 10 KNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAK---LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444443 444454343434445444433333 667777777666776667777777777777653
No 20
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.03 E-value=19 Score=21.98 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=16.0
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhhcC
Q psy1667 52 DLEIIFRVKEAEITELNAQVNDLRGK 77 (143)
Q Consensus 52 DlE~kv~k~~~EI~~L~~kV~DLrGK 77 (143)
||-.++.+-+.||.--..+|++|+++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566777777777777663
No 21
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.98 E-value=26 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy1667 30 ATVNKILKELWDRAFKLE 47 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lE 47 (143)
.+|...+++|+.+...||
T Consensus 6 ~eLE~r~k~le~~naeLE 23 (42)
T 2oqq_A 6 SELENRVKDLENKNSELE 23 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555666655555433
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.45 E-value=83 Score=22.99 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
++++-+..|-..|..++.|-||+-..+....-.+..++..+.+|+-
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888877776665555555544444443
No 23
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.17 E-value=63 Score=26.96 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcch
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL 83 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~L 83 (143)
.|++-...|-..|...++.-..|+..+..+...|..|..+|.+|......|..
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~~ 61 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444455667777778888888888999999999999999999998887764
No 24
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=41.35 E-value=72 Score=20.79 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 25 TNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+.+|-..+-..+- +.|..|..+.=.++..+..-..++..|..++..|.|
T Consensus 34 ~k~sK~~iL~~Ai---~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 34 EKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp SCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567665544444 345555555556666777777788888888877766
No 25
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.79 E-value=43 Score=22.11 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=25.7
Q ss_pred HHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCC
Q psy1667 43 AFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFI 79 (143)
Q Consensus 43 I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfk 79 (143)
|..=++-==+||..+..++.+|..|+..+.-++--|-
T Consensus 20 i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 20 LMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444446778899999999999999998888553
No 26
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.63 E-value=71 Score=20.21 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHH
Q psy1667 33 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVND 73 (143)
Q Consensus 33 ~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~D 73 (143)
++-+.+|...+..|+.+.-+|...+..-..||..|+.=+.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567888888888888888888888888888887765543
No 27
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=37.90 E-value=48 Score=21.01 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHhHHhhhhhCCCC---CC---------CCCCHHHHHHHHHH
Q psy1667 8 AERRRVIEQRCGTHK---DW---------TNADEATVNKILKE 38 (143)
Q Consensus 8 eeKkkiLaER~~pl~---~i---------d~ls~~~L~e~ckE 38 (143)
++|..||.-+++..+ ++ +|+|.++|..+|++
T Consensus 4 ~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~e 46 (83)
T 3aji_B 4 RQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQE 46 (83)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 566777766654432 22 38999999999996
No 28
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=37.61 E-value=1.1e+02 Score=21.73 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.+.+-++.|-..+...+..|.+|+.....-..++++|...++.-++
T Consensus 17 ~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~ 62 (129)
T 2fxo_A 17 SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999998876555
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=37.59 E-value=1.1e+02 Score=21.94 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEI 55 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~ 55 (143)
+.+||-++|-.-|=+|-.++..++++-=-+-.
T Consensus 27 L~~mSKqELIqEYl~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 27 LQNMSKQELIKEYLELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999988899999999888776543333
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.43 E-value=35 Score=21.42 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 34 KILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 34 e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+.+.+|...+..|+.+.-.|... |..|+..+..|++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~-------v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELAST-------ANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34556666666666665555544 4444444444444
No 31
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=35.79 E-value=37 Score=22.35 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=21.6
Q ss_pred HHHhHHhhhhhCCCC---CC---------CCCCHHHHHHHHHHH
Q psy1667 8 AERRRVIEQRCGTHK---DW---------TNADEATVNKILKEL 39 (143)
Q Consensus 8 eeKkkiLaER~~pl~---~i---------d~ls~~~L~e~ckEL 39 (143)
++|..||.=.+...+ ++ +|+|.++|..+|++=
T Consensus 14 ~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eA 57 (86)
T 2krk_A 14 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 57 (86)
T ss_dssp HHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 566677665554431 22 388999999999973
No 32
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.16 E-value=41 Score=19.16 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1667 30 ATVNKILKELWDRAFKLES 48 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEe 48 (143)
-.|+.+.++|..+++.||+
T Consensus 9 r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 9 RNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998875
No 33
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.87 E-value=89 Score=19.34 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHH
Q psy1667 35 ILKELWDRAFKLESEKYDLEIIFRVKEAEITELNA 69 (143)
Q Consensus 35 ~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~ 69 (143)
...+|...+..|+.+.-+|...|..-..|+..|..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555555554444444444
No 34
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.78 E-value=1.2e+02 Score=20.78 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=26.5
Q ss_pred HHhhhhhhhhHHHHHHh---hHHHHHHHHHHHHHhhcCCCCcchhhhhccHHHHHHHh
Q psy1667 43 AFKLESEKYDLEIIFRV---KEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQ 97 (143)
Q Consensus 43 I~~lEeEKYDlE~kv~k---~~~EI~~L~~kV~DLrGKfkKP~LkkV~~s~~~~~~l~ 97 (143)
+..+|.+++|++..+.. --.||++|+.||.+|-+ =+=-.=++.+-+-+-++.|+
T Consensus 4 L~~~Ekd~~~~ee~~~~~E~L~qEi~~Lr~kv~elEn-ErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 4 LVGMEKEQREQEEKQRKAEELLQELRHLKIKVEELEN-ERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHH
Confidence 45567777777777663 45689999999999966 22222333433323355554
No 35
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=30.63 E-value=1.1e+02 Score=19.75 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHhhHHHHH
Q psy1667 7 AAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLES--EKYDLEIIFRVKEAEIT 65 (143)
Q Consensus 7 ~eeKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEe--EKYDlE~kv~k~~~EI~ 65 (143)
-+++.+.|.+.++.| .=.| ..++|...-.+|..+|..|-. +--.++..|++-..+|.
T Consensus 7 leekvkaleekvkal-gggg-rieelkkkweelkkkieelggggevkkveeevkkleeeik 65 (67)
T 1lq7_A 7 LEEKVKALEEKVKAL-GGGG-RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp HHHHHHHHHHHHHHS-CCSS-SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 467889999999887 4333 678898888888888876642 33334444555544443
No 36
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=30.33 E-value=1.4e+02 Score=24.04 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=34.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 38 ELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 38 ELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.--.+|..-+..=-+++.++.....+|..|..+|++|.|
T Consensus 95 dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~ 133 (242)
T 3c9i_A 95 DHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDG 133 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcc
Confidence 344578888888889999999999999999999999999
No 37
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=30.27 E-value=26 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=25.3
Q ss_pred HhHHhhhhhCCCCCCCCCCHHHHHHH------HHHHHHHHH
Q psy1667 10 RRRVIEQRCGTHKDWTNADEATVNKI------LKELWDRAF 44 (143)
Q Consensus 10 KkkiLaER~~pl~~id~ls~~~L~e~------ckELh~~I~ 44 (143)
+.+.|-.+++.+..|..+|.++|.++ ++.+|+.+.
T Consensus 16 r~~~LL~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 16 NCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 56 (63)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHh
Confidence 44555577888888888888888766 677766654
No 38
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=29.14 E-value=57 Score=22.12 Aligned_cols=42 Identities=10% Similarity=0.111 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHH
Q psy1667 23 DWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEI 64 (143)
Q Consensus 23 ~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI 64 (143)
++.+++..++-.+|-+.|..+..-|=..|.-.+...+..|+.
T Consensus 28 ~~~~~~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~ 69 (101)
T 1v63_A 28 ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKV 69 (101)
T ss_dssp TTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 677888889989999888888877777787777766666653
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.11 E-value=1.3e+02 Score=23.40 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCC
Q psy1667 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKF 78 (143)
Q Consensus 28 s~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKf 78 (143)
-.++|..-...+...|..+..+--|++..+.+.+.+|.+++.++...+.+.
T Consensus 33 el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777788888899999999999999999999999999999998887744
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.66 E-value=62 Score=21.54 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=23.9
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 47 ESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 47 EeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
++-=-+||.++..++.-|.+||.-|...+.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~ 42 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARL 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333346889999999999999999887766
No 41
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.54 E-value=73 Score=18.41 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHh
Q psy1667 39 LWDRAFKLESEKYDLEIIFRV 59 (143)
Q Consensus 39 Lh~~I~~lEeEKYDlE~kv~k 59 (143)
|-+++..|=.++|+++..|.+
T Consensus 5 LEdKVEell~~~~~le~EV~R 25 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 334444444445555544443
No 42
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=27.83 E-value=49 Score=24.31 Aligned_cols=28 Identities=14% Similarity=0.225 Sum_probs=22.9
Q ss_pred hhhhhCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy1667 14 IEQRCGTHKDWTNADEATVNKILKELWDRAF 44 (143)
Q Consensus 14 LaER~~pl~~id~ls~~~L~e~ckELh~~I~ 44 (143)
..+|++.| -+||+++|.+-|.+|-.+|.
T Consensus 7 f~~r~~hl---~~l~d~el~~rar~LA~kIv 34 (121)
T 3kp1_E 7 FQQRRAHL---ANLSDEELQTRFWEMAEKIV 34 (121)
T ss_dssp HHHHTGGG---TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhCCHHHHHHHHHHHHHHHH
Confidence 45777655 67889999999999999876
No 43
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=26.37 E-value=2.4e+02 Score=22.32 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=47.7
Q ss_pred HHhHHhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCC
Q psy1667 9 ERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFI 79 (143)
Q Consensus 9 eKkkiLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfk 79 (143)
+-.-||.--.-| .+. ..+=-+..++|-.-...+-++-=||+....+...|+++|+.++.-|.|-..
T Consensus 10 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~s 75 (206)
T 3oa7_A 10 EHEDILNKLLDP--ELA---QSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTS 75 (206)
T ss_dssp HHHHHHHHHHCT--TCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred hHHHHHHHhcCH--hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHH
Confidence 334555544422 233 344445566666777777788889999999999999999999999999553
No 44
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=26.24 E-value=93 Score=21.76 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q psy1667 33 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 74 (143)
Q Consensus 33 ~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DL 74 (143)
..+.+|+-.+|..+...-- .++.|.+||-.||.|
T Consensus 31 ~qvikEIs~Kv~~Iqn~~L--------~E~~IRdLNDEINkL 64 (92)
T 1x4t_A 31 RQIIGEISKKVAQIQNAGL--------GEFRIRDLNDEINKL 64 (92)
T ss_dssp HHHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCC--------CHHHHHHHHHHHHHH
Confidence 4566666666666554322 455555555555544
No 45
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.17 E-value=1.5e+02 Score=19.90 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q psy1667 37 KELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDL 74 (143)
Q Consensus 37 kELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DL 74 (143)
-+|..+|..+..|==.|--.+..+.|+|+.|..+-.|+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45667777777776677777777777777777665443
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.11 E-value=94 Score=19.34 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=12.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 53 LEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 53 lE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
|+.+|..-..+...|...|..|+.
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555543
No 47
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.78 E-value=66 Score=21.79 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 31 TVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 31 ~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+|..-|.++-.++..++....+|+.+|..-...+.+-+.+-..+++
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~ 48 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARA 48 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566688888999999999999999988877777776665555544
No 48
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.81 E-value=74 Score=22.18 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.4
Q ss_pred hhh-hHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 49 EKY-DLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 49 EKY-DlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
.+- |+|.++..|-.|+...++.|.+|--
T Consensus 36 q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~ 64 (92)
T 3vp9_A 36 QNQKDYDFKMNQQLAEMQQIRNTVYEREL 64 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 8889999999999999999988854
No 49
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=24.24 E-value=80 Score=19.72 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHhHHhhhhhCCCC---C---------CCCCCHHHHHHHHHHH
Q psy1667 8 AERRRVIEQRCGTHK---D---------WTNADEATVNKILKEL 39 (143)
Q Consensus 8 eeKkkiLaER~~pl~---~---------id~ls~~~L~e~ckEL 39 (143)
++|..||.-.+...+ + .+|+|..+|..+|++-
T Consensus 6 ~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA 49 (78)
T 3kw6_A 6 EARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEA 49 (78)
T ss_dssp HHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456666665554442 1 2477888888898864
No 50
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=23.92 E-value=35 Score=28.53 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcch
Q psy1667 41 DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTL 83 (143)
Q Consensus 41 ~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~L 83 (143)
.+|-.+++.-..|...+..+...|..|..+|..|..+...|.+
T Consensus 11 ~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~~~~ 53 (319)
T 1fzc_C 11 ASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 53 (319)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCE
T ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444455555555566666678889999999999887777654
No 51
>1he1_A Exoenzyme S, EXOS; signaling protein, signalling complex, EXOS, RAC, pseudomonas aeruginosa, GAP, virulence factor; HET: GDP; 2.0A {Pseudomonas aeruginosa} SCOP: a.24.11.1 PDB: 1he9_A
Probab=23.84 E-value=53 Score=24.57 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEIIF 57 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv 57 (143)
|++.|.++|++.+..||.-...|.-=++-++..|
T Consensus 101 v~~As~e~L~ea~~~lh~vm~eva~l~~av~aev 134 (135)
T 1he1_A 101 VLDASPELRREITDQLHQVMSEVALLRQAVESEV 134 (135)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4557889999999999999888876666665544
No 52
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.38 E-value=1.2e+02 Score=26.29 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=34.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhhh
Q psy1667 39 LWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86 (143)
Q Consensus 39 Lh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~LkkV 86 (143)
|-.-|...++.=-.|+..+..+...|..|...|+.|..+...|..--+
T Consensus 96 ~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~~~~~~ 143 (411)
T 3ghg_C 96 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTV 143 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence 333344445555667777888889999999999999998888754333
No 53
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=22.29 E-value=55 Score=20.92 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHH
Q psy1667 25 TNADEATVNKILKE 38 (143)
Q Consensus 25 d~ls~~~L~e~ckE 38 (143)
+|+|.++|..+|++
T Consensus 30 ~G~SGADi~~l~~e 43 (82)
T 2dzn_B 30 DSLSGAVIAAIMQE 43 (82)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 38999999999997
No 54
>1r4t_A Exoenzyme S; EXOS, GAP, toxin, virulence factor, signal transduction; NMR {Pseudomonas aeruginosa}
Probab=22.27 E-value=60 Score=24.71 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRV 59 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k 59 (143)
|++.|.++|++.++.||.-...|.-=++-++..|..
T Consensus 103 v~~AS~e~L~ea~~~lh~vm~eva~l~~ave~evag 138 (153)
T 1r4t_A 103 VLDASPELRREITDQLHQVMSEVALLRQAVESEVSR 138 (153)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788999999999999999888777777776654
No 55
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.02 E-value=2.3e+02 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhhh
Q psy1667 41 DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV 86 (143)
Q Consensus 41 ~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~LkkV 86 (143)
..|...++.-..|+..+..+...|..|..+|..|..+...|.+.-|
T Consensus 98 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~~~~~~~ 143 (409)
T 1m1j_C 98 NTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPCKDTA 143 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCEESC
T ss_pred HHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3334444477788888888888999999999999988877764443
No 56
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=21.99 E-value=1.5e+02 Score=18.92 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh---hhhHHHHHHhh
Q psy1667 30 ATVNKILKELWDRAFKLESE---KYDLEIIFRVK 60 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeE---KYDlE~kv~k~ 60 (143)
|++++++++.-.--..||+| |-+||.-|.+.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888887777778876 66777777665
Done!