Query psy1667
Match_columns 143
No_of_seqs 157 out of 313
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 19:00:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 80.0 3.9 0.00028 25.8 7.0 60 14-76 28-87 (88)
2 d1nkpb_ a.38.1.1 (B:) Max prot 56.5 17 0.0012 22.3 6.0 49 25-76 34-82 (83)
3 d1v63a_ a.21.1.1 (A:) Nucleola 34.7 19 0.0014 22.4 3.6 52 13-65 19-70 (101)
4 d1he1a_ a.24.11.1 (A:) ExoS to 29.0 17 0.0013 25.4 2.7 33 25-57 102-134 (135)
5 d2a1ja1 a.60.2.5 (A:837-898) D 28.2 12 0.00091 21.9 1.6 35 10-44 15-55 (62)
6 d1st6a3 a.24.9.1 (A:253-371) V 28.0 80 0.0059 21.1 7.7 62 25-90 40-104 (119)
7 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 26.7 30 0.0022 21.2 3.4 44 30-87 32-75 (84)
8 d1g4us1 a.24.11.1 (S:167-296) 25.8 21 0.0015 24.8 2.6 34 24-57 92-125 (130)
9 d1lwma_ a.21.1.1 (A:) NHP6a {B 25.4 45 0.0033 20.5 4.2 41 25-65 44-84 (93)
10 d1c4ka3 d.125.1.1 (A:570-730) 25.0 18 0.0013 25.9 2.2 42 24-90 18-59 (161)
11 d1x4ta1 a.2.15.1 (A:7-86) Pre- 21.7 92 0.0067 19.6 5.8 19 33-51 25-43 (80)
12 d1st6a5 a.24.9.1 (A:489-646) V 20.0 88 0.0064 21.8 5.2 62 24-88 23-86 (158)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.97 E-value=3.9 Score=25.78 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=37.0
Q ss_pred hhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 14 IEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 14 LaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
|..-+|++++-..+|-..+-..+-+ .|..|..+--.+...+..-..+...|+.+++.|+|
T Consensus 28 Lr~llP~~~~~~k~sK~~iL~~A~~---yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 87 (88)
T d1nkpa_ 28 LRDQIPELENNEKAPKVVILKKATA---YILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHTTCGGGTTCTTCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCCCCCccCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5555655534445677665555543 34444445455555566666777889999999987
No 2
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.49 E-value=17 Score=22.27 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhc
Q psy1667 25 TNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRG 76 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrG 76 (143)
+.+|-..+-..+- +.|..|..+.-++.........+...|+.+|+.|+|
T Consensus 34 ~k~sK~~iL~~A~---~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 82 (83)
T d1nkpb_ 34 EKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp SCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred CCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556655544443 345555555566666666667778889999988887
No 3
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.73 E-value=19 Score=22.44 Aligned_cols=52 Identities=8% Similarity=0.072 Sum_probs=37.7
Q ss_pred HhhhhhCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHH
Q psy1667 13 VIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEIT 65 (143)
Q Consensus 13 iLaER~~pl~~id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~ 65 (143)
|+.++++.+ ...|++..++...|-+.|..|..-+=..|.=.+.-.+..|...
T Consensus 19 F~~e~r~~~-~~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e 70 (101)
T d1v63a_ 19 FSQELLSNG-ELNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH 70 (101)
T ss_dssp HHHHHHHHC-TTTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 5677888899999999998888777778877777766666543
No 4
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.97 E-value=17 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy1667 25 TNADEATVNKILKELWDRAFKLESEKYDLEIIF 57 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv 57 (143)
++.|.++|++++++||.-+.+|-.=++-++..|
T Consensus 102 ~~As~e~l~~~~~qlh~l~~eva~l~~av~aev 134 (135)
T d1he1a_ 102 LDASPELRREITDQLHQVMSEVALLRQAVESEV 134 (135)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456889999999999999888876666666554
No 5
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.23 E-value=12 Score=21.85 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=24.4
Q ss_pred HhHHhhhhhCCCCCCCCCCHHHHHHH------HHHHHHHHH
Q psy1667 10 RRRVIEQRCGTHKDWTNADEATVNKI------LKELWDRAF 44 (143)
Q Consensus 10 KkkiLaER~~pl~~id~ls~~~L~e~------ckELh~~I~ 44 (143)
+.+.|..+++.+..|..+|.++|.++ |+.+|+.++
T Consensus 15 ~~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~ 55 (62)
T d2a1ja1 15 NCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIH 55 (62)
T ss_dssp HHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHh
Confidence 44566678888888888999988554 445555543
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.99 E-value=80 Score=21.11 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHhhHHHHHHHHHHHHHhh--cCCCCcchhhhhccH
Q psy1667 25 TNADEATVNKILKELWDRAFKL-ESEKYDLEIIFRVKEAEITELNAQVNDLR--GKFIKPTLKKVSKYE 90 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~l-EeEKYDlE~kv~k~~~EI~~L~~kV~DLr--GKfkKP~LkkV~~s~ 90 (143)
.|+.+..|+.++.+=..--..+ -.+|.+ +.+.-.||..|..++.||+ |+---|-=..+...-
T Consensus 40 gg~Ge~AiR~il~earkva~~~~~~~r~~----Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi 104 (119)
T d1st6a3 40 GDAGEQAIRQILDEAGKAGELCAGKERRE----ILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQV 104 (119)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCSTTHHH----HHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHhCCchhHHH----HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4666666666654433221111 223333 3333457888888888884 444445555444443
No 7
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=26.66 E-value=30 Score=21.18 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhhhh
Q psy1667 30 ATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVS 87 (143)
Q Consensus 30 ~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~LkkV~ 87 (143)
+.+...|.+.-+||+. .. +.+..++..+..+|.. ...|.+.|+-
T Consensus 32 ~~i~~~l~e~~~WL~~--n~-----------~a~~ee~~~k~~eLe~-~~~PI~~k~y 75 (84)
T d1ud0a_ 32 QKILDKCNEIISWLDK--NQ-----------TAEKEEFEHQQKELEK-VCNPIITKLY 75 (84)
T ss_dssp HHHHHHHHHHHHHHHH--HH-----------HHHHHHHHHHTHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc--CC-----------CCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5688889999999863 11 2344555556666666 5567776654
No 8
>d1g4us1 a.24.11.1 (S:167-296) SptP tyrosine phosphatase {Salmonella typhimurium [TaxId: 90371]}
Probab=25.84 E-value=21 Score=24.85 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEIIF 57 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv 57 (143)
|++.|.++|++.+++||.-..++-.=++.++..+
T Consensus 92 V~~AS~e~l~ea~~~Lh~~~~eva~l~~~ve~~~ 125 (130)
T d1g4us1 92 VDKASTHELTQAVKKIHVIAKELKNVTAELEKIE 125 (130)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557889999999999999888765555555433
No 9
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.41 E-value=45 Score=20.46 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHH
Q psy1667 25 TNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEIT 65 (143)
Q Consensus 25 d~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~ 65 (143)
++++..++...|.+.|..+..-+=..|--.+...+..|+..
T Consensus 44 p~~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e 84 (93)
T d1lwma_ 44 PDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84 (93)
T ss_dssp TTSCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999888888888888887777754
No 10
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=25.05 E-value=18 Score=25.92 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhhcCCCCcchhhhhccH
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE 90 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLrGKfkKP~LkkV~~s~ 90 (143)
-.|+ .|+++|.++|+.+... .+..|..+. |....|=.+.|+.
T Consensus 18 Y~~~---~LrdLc~~mH~~~~~~----------------~~~~l~~~~------f~~~~lPe~~mtP 59 (161)
T d1c4ka3 18 YNGY---TIRELCQELHDFYKNN----------------NTFTYQKRL------FLREFFPEQGMLP 59 (161)
T ss_dssp STTC---BHHHHHHHHHHHHHTT----------------THHHHHHHT------TSGGGCCEESSCH
T ss_pred HcCC---CHHHHHHHHHHHHHhc----------------CHHHHHHHH------hhhccCCccccCH
Confidence 4555 4999999999987642 244444332 6666666666776
No 11
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.74 E-value=92 Score=19.59 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q psy1667 33 NKILKELWDRAFKLESEKY 51 (143)
Q Consensus 33 ~e~ckELh~~I~~lEeEKY 51 (143)
..+.+|+-.+|..+...--
T Consensus 25 ~~iikEI~~kvs~Iqn~~L 43 (80)
T d1x4ta1 25 RQIIGEISKKVAQIQNAGL 43 (80)
T ss_dssp HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 5566777777776665544
No 12
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.04 E-value=88 Score=21.81 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhh--cCCCCcchhhhhc
Q psy1667 24 WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLR--GKFIKPTLKKVSK 88 (143)
Q Consensus 24 id~ls~~~L~e~ckELh~~I~~lEeEKYDlE~kv~k~~~EI~~L~~kV~DLr--GKfkKP~LkkV~~ 88 (143)
-.|+.+..|+.++.+= .+|...=...+ -..+...-.+|..|..++.||+ |+--.|--..+..
T Consensus 23 ~~glGe~Air~iv~ea-rrvA~~~~~~~--r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~ 86 (158)
T d1st6a5 23 DRGVGQAAIRGLVAEG-RRLANVMMGPY--RQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAA 86 (158)
T ss_dssp CCSCSHHHHHHHHHHH-HHHHHTSCHHH--HHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHH
T ss_pred CCcccHHHHHHHHHHH-HHHHHhcCchh--HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3677777777776652 22222111111 1333444557777888888774 3333455555443
Done!