RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1667
(143 letters)
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 84.1 bits (209), Expect = 7e-22
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
+ +K E+ + + +RC + A + ++ K+L R +L+ E+YD+E K+
Sbjct: 20 QRKKEEEKEKYLAERCPPLRLS--LSRAELQELCKKLHARIDRLDEERYDIEEKVAKKDK 77
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVK 113
EI +L +VNDLRGKF KPTLKKV K + K K + R LK VK
Sbjct: 78 EIEDLKKKVNDLRGKFKKPTLKKVRKSADAMLKALLGSKHKVSMDLRANLKQVK 131
>gnl|CDD|233764 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. A number of
anaerobic and microaerophilic species lack pyruvate
dehydrogenase and have instead a four subunit,
oxygen-sensitive pyruvate oxidoreductase, with either
ferredoxins or flavodoxins used as the acceptor. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 31.7 bits (72), Expect = 0.093
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 32/107 (29%)
Query: 31 TVNKILKELW--DRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSK 88
T NKI W +R +KL+ E YD P +++ +
Sbjct: 189 TYNKINTYEWYRERVYKLDEEGYD----------------------------PIVREPEE 220
Query: 89 YENKFAKLQKKAAEFNFRNQLKV--VKKKEFTLEEEEKEKKPEWTKV 133
+E K A KKA E+ R + + + + T EE ++ P +
Sbjct: 221 FEEKAAAAIKKAMEWGDRIPIGIFYKNENKETFEERLEKILPRYMSA 267
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 30.0 bits (68), Expect = 0.46
Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 26 NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKK 85
+ + ++ K+L ++F + E+ +E E + +N+ K + L+
Sbjct: 140 DHFKNKSPELQKKL--QSFGFPQLLIEFEVNDISEEQEFEKFEEAINEEVEKAAQEALEA 197
Query: 86 VSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFT 118
K + + K++K F+ + K+ +E
Sbjct: 198 EKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIK 230
>gnl|CDD|153377 cd07365, MhpB_like, Subunit B of the Class III Extradiol
ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate
1,2-dioxygenase (MhpB), which catalyzes the oxidization
and subsequent ring-opening of
2,3-dihydroxyphenylpropionate.
2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB)
catalyzes the oxidization and subsequent ring-opening of
2,3-dihydroxyphenylpropionate, yielding the product
2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is
an essential enzyme in the beta-phenylpropionic
degradation pathway, in which beta-phenylpropionic is
first hydrolyzed to produce
2,3-dihydroxyphenylpropionate. The enzyme is a member of
the class III extradiol dioxygenase family, a group of
enzymes which use a non-heme Fe(II) to cleave aromatic
rings between a hydroxylated carbon and an adjacent
non-hydroxylated carbon. LigAB-like class III enzymes
are usually composed of two subunits, designated A and
B, which form a tetramer composed of two copies of each
subunit. This model represents the catalytic subunit, B.
MhpB is likely to be a tetramer.
Length = 310
Score = 28.0 bits (63), Expect = 1.8
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
E +AA ++RVI K + A ++T+ + E WDRAF DL + +
Sbjct: 205 PEARAARQQRVIA----AAKAFA-AGDSTLMPLNPE-WDRAFLDLLASGDLAALDAMTND 258
Query: 63 EITE 66
EI
Sbjct: 259 EIAA 262
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 2.2
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 28 DEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVS 87
V + LK+L +LE E E+I R + E+ E+ + L + LK+++
Sbjct: 189 LSDEVEEELKKLGFERLELEEEGTPSELI-REIKEELEEIEKERESLLEE-----LKELA 242
Query: 88 KYENKF 93
K +
Sbjct: 243 KKYLEE 248
>gnl|CDD|225020 COG2109, BtuR, ATP:corrinoid adenosyltransferase [Coenzyme
metabolism].
Length = 198
Score = 26.4 bits (59), Expect = 4.3
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 4 ERKAAERR--RVIEQRCGTHKDWTNADEATVNKILKELWDRAFK-LESEKYDLEI 55
E A E+ V G W D K W+ A + L KYDL I
Sbjct: 73 EEAALEKFGLGVEFHGMGEGFTWETQDREADIAAAKAGWEHAKEALADGKYDLVI 127
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous
[Energy metabolism, Pentose phosphate pathway].
Length = 653
Score = 27.0 bits (60), Expect = 4.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 79 IKPTLKKVSKYENKFAKLQKK----AAEFNFR 106
+ K ++ FA +KK AAEF R
Sbjct: 295 KERGAKAEQEWNELFAAYKKKYPELAAEFTRR 326
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 26.7 bits (59), Expect = 5.1
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 36 LKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYE--NKF 93
+ EL K E+++ + +E +I ++ Q+ GK I LK E K
Sbjct: 360 ISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKI 419
Query: 94 AKLQKKAAEFNFRNQLKVVKKK--EFTLEEEEKEKKPE 129
+K+ E ++K +KK EE +KEK+ E
Sbjct: 420 TIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKE 457
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 25.9 bits (58), Expect = 9.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 61 EAEITELNAQVNDLRGKFI-----KPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVV 112
E E+T LN Q +++ + K LK K + K K + KAA+ + +L V+
Sbjct: 39 ELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLFVL 95
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 25.9 bits (58), Expect = 9.6
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 11/105 (10%)
Query: 29 EATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEI---TELNAQVNDLRGKFI---KPT 82
E +IL+E K E+E E + KE E ++ + R + K
Sbjct: 37 EEEAKRILEE-----AKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRL 91
Query: 83 LKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKK 127
L+K + K L+K+ E + + K++E +EEE E+
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.129 0.359
Gapped
Lambda K H
0.267 0.0881 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,211,959
Number of extensions: 652977
Number of successful extensions: 914
Number of sequences better than 10.0: 1
Number of HSP's gapped: 875
Number of HSP's successfully gapped: 161
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.3 bits)