RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1667
(143 letters)
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 84.2 bits (208), Expect = 2e-21
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 6/142 (4%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
K E++ + + + ++ K+L + ++ E+YD E+ +
Sbjct: 33 AAAKEVEKQNYLAEHSPPLSL--PGSMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNK 90
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKKEFTL 119
E+ +L+ ++ DLRGKF +P L++V + + K + R LK V KKE T
Sbjct: 91 ELEDLSQKLFDLRGKFKRPPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQV-KKEDTE 149
Query: 120 EEEEKEKKPEWTKVGGDKGKEE 141
+E++ +W K +K E
Sbjct: 150 KEKDLRDVGDWRKNIEEKSGME 171
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 81.5 bits (201), Expect = 1e-20
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 7/142 (4%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
E + E+ R + R + A + + ++L R K++ E+YD+E
Sbjct: 35 AEERRGEKGRALSTRAQP-LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNIT 93
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSKYENKFAKL---QKKAAEFNFRNQLKVVKKKEFTL 119
EI +L ++ DLRGKF +PTL++V + + + + R LK VKK++
Sbjct: 94 EIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKED--- 150
Query: 120 EEEEKEKKPEWTKVGGDKGKEE 141
E+E + +W K E
Sbjct: 151 TEKENREVGDWRKNIDALSGME 172
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 66.8 bits (163), Expect = 3e-15
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
E + E+ R + R + A + + ++L R K++ E+YD+E
Sbjct: 35 AEERRGEKGRALSTRAQP-LELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNIT 93
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSK 88
EI +L ++ DLRGKF +PTL++V
Sbjct: 94 EIADLTQKIFDLRGKFKRPTLRRVRI 119
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 45.3 bits (107), Expect = 3e-07
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
K+ +++V+ +R + + +E + KELWD ++L++EKYD + K+
Sbjct: 19 KQTARETKKKVLAERRKP-LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKY 77
Query: 63 EITELNAQVNDLRGKFIKPTLKK 85
EI L +++ + K K
Sbjct: 78 EIVTLRNRIDQAQKHSKKAGAKG 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 7e-07
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 16 QRCGTHKD-WTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA--EITELN--AQ 70
Q G D + + A +++W+RA + Y I+ V +T +
Sbjct: 1627 QEQGMGMDLYKTSKAA------QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 71 VNDLRGKFIKPTLKKVS----KYENKFAKLQKKAAEFNFRNQLKVVKKKEFT 118
+R + + + K E F ++ + + + FR++ ++ +FT
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Score = 31.9 bits (72), Expect = 0.061
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 44/131 (33%)
Query: 8 AERRRVIEQRCGTHKDWTNADEATVN-KILKELWDRAFKLESEKYDLEIIFRVKEAEI-- 64
E+ + I + T D KI KE+ + + FR ++ +
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS---------YTFRSEKGLLSA 1728
Query: 65 TELNAQ----------VNDLRGKFIKPTLKKVSKYENKFA--------KLQKKAAE---F 103
T+ Q DL+ K + P + FA L A+
Sbjct: 1729 TQ-FTQPALTLMEKAAFEDLKSKGLIPA-------DATFAGHSLGEYAAL---ASLADVM 1777
Query: 104 NFRNQLKVVKK 114
+ + ++VV
Sbjct: 1778 SIESLVEVVFY 1788
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.004
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 24 WTNADEATVNKILKELWDRAFKLESEK------YDLEIIFRVKEAEITELNAQV----ND 73
W + ++ V ++ +L + + K + + +VK L+ + N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 74 LRG----KFIKPT------------LKKVSKYENKFAKLQKKAAEFNF-RNQLK 110
+ I P LK + E + + +F F +++
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIR 508
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 33.8 bits (77), Expect = 0.004
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
++ + ++++++ +R + +E + + KELW + LE+EK+DL+ F+ ++
Sbjct: 19 RQTEREKKKKILAERRKV-LAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKY 77
Query: 63 EITELNAQVNDLRGKFIKPTLKKVS 87
EI L ++ND + KV+
Sbjct: 78 EINVLRNRINDNQKVSKTRGKAKVT 102
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin
biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella
typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Length = 196
Score = 31.3 bits (71), Expect = 0.073
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 4 ERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAF-KLESEKYDLEII 56
ER E V Q T W + +W L D+ ++
Sbjct: 73 ERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVL 126
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.099
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 34 KILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKV---SKYE 90
K LK + + LE + +I E N + L K + K
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 91 NKFAKLQKKAAEF-NFRNQLKV----VKKKEFTLEEEEKEKK 127
+ +L+ E N N++ + K L + + EKK
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 29.8 bits (68), Expect = 0.28
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 95 KLQKKAAE--FNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEEE 142
K+QK+ A F++ VV K + EE E E + D+ K EE
Sbjct: 149 KIQKRCANVGFDWTTLGPVVDK----VYEEIDEVMYEARQAVVDQAKLEE 194
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.8 bits (67), Expect = 0.30
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
Query: 3 KERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEA 62
E + + R K + ++E +R+ +L++EK ++ E
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE 122
++ E A L+ K+ K E+ ++ + + +L + + T
Sbjct: 963 QLEEEEAARQKLQ-LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 123 EKEKK 127
E+E+K
Sbjct: 1022 EEEEK 1026
Score = 25.6 bits (56), Expect = 8.8
Identities = 22/111 (19%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 33 NKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENK 92
++ EL R K E + +LE I R E E ++L+ Q+ +L+ + I +++K E +
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ-IAELKAQLAKKEEE 1096
Query: 93 FAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPEWTKVGGDKGKEEES 143
+ + + + K +E + ++ E K +K ++++
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKR 1147
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 0.60
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 3/141 (2%)
Query: 2 FKERKAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKE 61
F K +E+ + + G + + + +I+KE R ++E E E + +
Sbjct: 140 FLSLKPSEKLETVAKLLGIDEFEKCYQK--MGEIVKEYEKRLERIEGELNYKEESLKARL 197
Query: 62 AEITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEE 121
E++ L + L KF++ K + + + + EF L
Sbjct: 198 KEMSNLEKEKEKLT-KFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPY 256
Query: 122 EEKEKKPEWTKVGGDKGKEEE 142
E ++
Sbjct: 257 SFVELTKDFEVRVHAPNGVLT 277
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
hydrolase, protein structure initiative, S2F, structure
2 function project; NMR {Haemophilus influenzae}
Length = 154
Score = 25.7 bits (57), Expect = 4.8
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 26 NADEATVNKILKELWDRAFKLESEKYDLEIIFRVKEAEITELNAQVNDLRGKFIKPT 82
N + + + + A + E + ++ + V EAE ELN RGK +PT
Sbjct: 14 NIEGLPTEEQIVQWATGAVQPEGNEVEMTVRI-VDEAESHELNLT---YRGK-DRPT 65
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.4 bits (58), Expect = 4.8
Identities = 22/126 (17%), Positives = 39/126 (30%), Gaps = 13/126 (10%)
Query: 21 HKDWTNADEATVNKILKELWDRAFKLESEKYDLEIIFRVKE--AEITELNAQVNDLRGKF 78
W+ V K L++ + L + + + NA + DL +
Sbjct: 53 ETAWSAIIPRKVRKSLEDTLQKLKNLPNRIRQYSAFDHAQNLIKIYLKGNAIITDLHSEA 112
Query: 79 IKP----TLKKVSKYENKFAKLQ-KKAAEFNFRNQLKVVKK------KEFTLEEEEKEKK 127
IK LKK +L + + + ++ E LEE K +
Sbjct: 113 IKDRHWKILKKRLNTNWIITELTLGSIWDSDLARNENIYREVITAAQGEIALEEFLKGVR 172
Query: 128 PEWTKV 133
WT +
Sbjct: 173 EFWTTL 178
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM
barrel, NADPH oxidoreductase, enone reductase; HET: FMN;
1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A*
4df2_A*
Length = 407
Score = 26.0 bits (58), Expect = 5.0
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 13 VIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLE 54
V+E R + D + D+A N+ + ++W L++ Y +
Sbjct: 285 VVEPRVSGNVDVSEEDQAGDNEFVSKIWKGVI-LKAGNYSYD 325
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.0 bits (57), Expect = 5.4
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 29 EATVNKILKEL---WDRA-FKLESEKYDLEIIFRVKE--AEITELNAQVNDLRG-KFIKP 81
E + K L + W A +++ L+++ E ++ ++ + K
Sbjct: 220 EFVIEKSLNRIKKFWKEAQYEVIEHSSGLKLVREWDVLEQACKEDLEELVSMKASNYYKI 279
Query: 82 TLKKVSKYENKFAKLQK 98
+ E+K KL +
Sbjct: 280 FEQDCLDLESKLTKLSE 296
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 25.3 bits (56), Expect = 5.5
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 57 FRVKEAEITELNAQVNDLRGKFIKPTLKKVSKYENKFA 94
++VK ++ +L Q L +F + + V + N +A
Sbjct: 86 WKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYA 123
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 25.7 bits (55), Expect = 8.3
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 7/138 (5%)
Query: 6 KAAERRRVIEQRCGTHKDWTNADEATVNKILKELWDRAFKLESEKYDLE---IIFRVKEA 62
+ RRV+ K T A T K++ +++D F + EKYD E + +
Sbjct: 310 QRRATRRVMGATKEKDKAPTKA---TTTKLVYQIFDTFFSEQIEKYDKEDKENAMKRRRC 366
Query: 63 EITELNAQVNDLRGKFIKPTLKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEE 122
+ E+ Q + K K +K +K A L+++ + ++ + + E
Sbjct: 367 GVCEVCQQPECGKCKACKDMVKFGGTGRSKQACLKRRCPNL-AVKEADDDEEADDDVSEM 425
Query: 123 EKEKKPEWTKVGGDKGKE 140
KK K
Sbjct: 426 PSPKKLHQGKKKKQNKDR 443
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.129 0.359
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,166,140
Number of extensions: 119151
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 70
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.0 bits)