BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16673
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNK D S R V + + L
Sbjct: 113 MLVGNKCD-ESPSREVQSSEAEAL 135
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPA 283
+ I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + P
Sbjct: 53 LQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI 112
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
M + V S+ ++ KC F +E SAK N+N+KE+F+
Sbjct: 113 MLVGNKCDESPSREVQSSEAEALARTWKCAF------------METSAKLNHNVKELFQE 160
Query: 344 FLTLSQ 349
L L +
Sbjct: 161 LLNLEK 166
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY 47
R+ + G GVGKS ++ RF+ T+ + Y TVED Y
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 20/153 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPA 283
+ I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + + P
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
M + C E+ + V + Q +E SAK NYN+KE+F+
Sbjct: 118 M-------------LVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164
Query: 344 FLTL----SQILTTNGDENSLKRRSSAYVNKGK 372
LTL + L +G + ++R+ KGK
Sbjct: 165 LLTLETRRNMSLNIDGKRSGKQKRTDRV--KGK 195
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + ++IP+
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 205 VVAGNKSDMTSHH 217
++ GNK D T
Sbjct: 118 MLVGNKCDETQRE 130
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSR----DFHVGAVTIKEIP---IVVAGNKSDMTSH 75
KS ++ RF+ T+ D Y T+ED Y + D V + I + A + ++
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 76 HRAVHLEDVSEWLYCE--LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
H + + V+ E P + ++Q ++IP+++ GNK D T
Sbjct: 81 HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE 130
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D +++P+
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK-RVKDSEDVPM 112
Query: 205 VVAGNKSDMTS 215
V+ GNKSD+ S
Sbjct: 113 VLVGNKSDLPS 123
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 111
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 74
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ R I+ +++P+V+ GNKSD+ S
Sbjct: 75 -TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D +++P+
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK-RVKDSEDVPM 112
Query: 205 VVAGNKSDMTS 215
V+ GNKSD+ S
Sbjct: 113 VLVGNKSDLPS 123
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 111
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 74
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ R I+ +++P+V+ GNKSD+ S
Sbjct: 75 -TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D +++P+
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK-RVKDSEDVPM 112
Query: 205 VVAGNKSDMTS 215
V+ GNKSD+ S
Sbjct: 113 VLVGNKSDLPS 123
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 64
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ R I+ +++P+V+ GNKSD+
Sbjct: 65 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 121 S 121
S
Sbjct: 123 S 123
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 111
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE-IREQRQDFQEIP 203
++ILDT G QF +MR L I F+LVYS +SFQ +K ++ IR +R ++++P
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR--YEKVP 110
Query: 204 IVVAGNKSDM 213
+++ GNK D+
Sbjct: 111 VILVGNKVDL 120
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
++ILDT G QF +MR L I F+LVYS +SFQ +K ++I
Sbjct: 53 LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI 100
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 57/108 (52%), Gaps = 14/108 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKSDMTSHHRAVHL 81
KS + +F+ T+ ++Y T+ED Y ++ V + ++ EI + AG ++ + R +++
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEI-LDTAG--TEQFASMRDLYI 72
Query: 82 ED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
++ V++ + ++ +R I +++P+++ GNK D+
Sbjct: 73 KNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G +F AMR + T FLLV+S T SF+ + + +I + D E P+
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK-DRDEFPM 113
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNK+D+ H R V E+
Sbjct: 114 ILIGNKADL-DHQRQVTQEE 132
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G +F AMR + T FLLV+S T SF+ + + +I + +FP +
Sbjct: 55 LDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI 114
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 280 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 317
+F AMR + T FLLV+S T SF+ + + +I
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI 102
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQRQDFQEI 202
+DILDT G +F AMR + H FLLV++ +SF V F +I + R DF
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDF--- 115
Query: 203 PIVVAGNKSDMTSHHR 218
P+V+ GNK+D+ S +
Sbjct: 116 PVVLVGNKADLESQRQ 131
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G +F AMR + H FLLV++ +SF V F +I + FP
Sbjct: 59 LDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV- 117
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
+LV + LES + V E SAK N+ E F
Sbjct: 118 -----------VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL 166
Query: 345 L 345
+
Sbjct: 167 V 167
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK---SDMTSHHRAV 79
KS + +F+ + + Y T+ED Y++ V + + + AG + + + RA
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 80 H-------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHR 124
H + D + E+ KL I D+ P+V+ GNK+D+ S +
Sbjct: 82 HGFLLVFAIND--RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ 131
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNKSD+ +
Sbjct: 112 VLVGNKSDLAA 122
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNKSD+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNKSD+ +
Sbjct: 112 VLVGNKSDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D +++P+
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK-RVKDSEDVPM 129
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ S
Sbjct: 130 VLVGNKCDLPS 140
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 71 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 128
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D +++P+
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK-RVKDSEDVPM 112
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ S
Sbjct: 113 VLVGNKCDLPS 123
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 64
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ R I+ +++P+V+ GNK D+
Sbjct: 65 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 121 S 121
S
Sbjct: 123 S 123
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P
Sbjct: 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVP 111
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FLLV+S T ESF + + E+I + + +IP+
Sbjct: 57 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 116
Query: 205 VVAGNKSDMTSHHRAVHLED 224
+V GNKSD+ R V +E+
Sbjct: 117 LVVGNKSDL-EERRQVPVEE 135
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQFPA 283
+DILDT G + A+R + FLLV+S T ESF + + E+I R + ++ + P
Sbjct: 57 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIP- 115
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLECSAKDNYNIKEVF 341
L+V + + LE + V EE R + +++ Q +E SAK N+ +VF
Sbjct: 116 -----------LLVVGNKSDLEERRQVPV--EEARSKAEEWGVQYVETSAKTRANVDKVF 162
Query: 342 RTFLTLSQILTTNGDEN 358
F + +I T EN
Sbjct: 163 --FDLMREIRTKKMSEN 177
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ D
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGLED 67
Query: 72 MTSHHRAVHLEDVSEWL----------YCELPKLR-YVIQSSSFGDEIPIVVAGNKSDMT 120
+ R + +L + + R +++ + D+IP++V GNKSD+
Sbjct: 68 YAA-IRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL- 125
Query: 121 SHHRAVHLED----VSEW 134
R V +E+ EW
Sbjct: 126 EERRQVPVEEARSKAEEW 143
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FLLV+S T ESF + + E+I + + +IP+
Sbjct: 53 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPL 112
Query: 205 VVAGNKSDMTSHHRAVHLED 224
+V GNKSD+ R V +E+
Sbjct: 113 LVVGNKSDL-EERRQVPVEE 131
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 19/137 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQFPA 283
+DILDT G + A+R + FLLV+S T ESF + + E+I R + ++ + P
Sbjct: 53 IDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIP- 111
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF--QLLECSAKDNYNIKEVF 341
L+V + + LE + V EE R + +++ Q +E SAK N+ +VF
Sbjct: 112 -----------LLVVGNKSDLEERRQVPV--EEARSKAEEWGVQYVETSAKTRANVDKVF 158
Query: 342 RTFLTLSQILTTNGDEN 358
F + +I T EN
Sbjct: 159 --FDLMREIRTKKMSEN 173
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ D
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGLED 63
Query: 72 MTSHHRAVHLEDVSEWL----------YCELPKLR-YVIQSSSFGDEIPIVVAGNKSDMT 120
+ R + +L + + R +++ + D+IP++V GNKSD+
Sbjct: 64 YAA-IRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL- 121
Query: 121 SHHRAVHLED----VSEW 134
R V +E+ EW
Sbjct: 122 EERRQVPVEEARSKAEEW 139
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 118
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 119 VLVGNKCDLAA 129
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 60 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 120 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 172
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 80
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 81 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKSDMTSHHRAVHL 81
KS + + + N + D Y T+ED Y + + G + +I G + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEY---SAMRDQYM 72
Query: 82 EDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 73 R-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D+Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G +GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 63
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ + R I+ D++P+V+ GNK D+
Sbjct: 64 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 121 S 121
+
Sbjct: 122 A 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 63
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ + R I+ D++P+V+ GNK D+
Sbjct: 64 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 121 S 121
+
Sbjct: 122 A 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQE 201
++ILDT G QF AMR L + F LVYS T +F +++REQ +D ++
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTED 108
Query: 202 IPIVVAGNKSDMTSHHRAVHLE 223
+P+++ GNK D+ R V E
Sbjct: 109 VPMILVGNKCDL-EDERVVGKE 129
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G QF AMR L + F LVYS T +F +++REQ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------I 100
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
R+ +LV + LE + V K + + Q + LE SAK N+ E+F
Sbjct: 101 LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V + AG ++
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG--TE 62
Query: 72 MTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+ R +++++ ++ + +L LR I +++P+++ GNK D+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-E 121
Query: 122 HHRAVHLED----VSEWLYC 137
R V E +W C
Sbjct: 122 DERVVGKEQGQNLARQWCNC 141
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKSDMTSHHRAVHL 81
KS + + + N + D Y T+ED Y + + G + + +I + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDI-LDTAGQEE--YSAMRDQYM 72
Query: 82 EDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 73 R-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 116
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 117 VLVGNKCDLAA 127
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 78
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 79 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 116
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 117 VLVGNKCDLAA 127
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 58 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 78
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 79 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFRQ 165
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQE 201
++ILDT G QF AMR L + F LVYS T +F +++REQ +D ++
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTED 108
Query: 202 IPIVVAGNKSDMTSHHRAVHLE 223
+P+++ GNK D+ R V E
Sbjct: 109 VPMILVGNKCDL-EDERVVGKE 129
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G QF AMR L + F LVYS T +F +++REQ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------I 100
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
R+ +LV + LE + V K + + Q + LE SAK N+ E+F
Sbjct: 101 LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV+LG GVGKS + +F+ + D Y T+ED Y + V + AG ++
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG--TE 62
Query: 72 MTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+ R +++++ ++ + +L LR I +++P+++ GNK D+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-E 121
Query: 122 HHRAVHLED----VSEWLYC 137
R V E +W C
Sbjct: 122 DERVVGKEQGQNLARQWCNC 141
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 117
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 118 VLVGNKCDLAA 128
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 59 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 119 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 171
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 63
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ + R I+ D++P+V+ GNK D+
Sbjct: 64 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 121 S 121
+
Sbjct: 122 A 122
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + +D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK-RVKDSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDEYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D P
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-- 125
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
FLLV + + LE + V + R ++ + +E SAK N+ +VF
Sbjct: 126 ----------FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P
Sbjct: 68 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPF 126
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +E+
Sbjct: 127 LLVGNKSDL-EDKRQVSVEE 145
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ + D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGQED 78
Query: 72 MTS----HHRAVHLEDVSEWLYC--ELPKLRYVIQSSSFGDEI---------PIVVAGNK 116
+ + R+ E C + ++ ++ F ++I P ++ GNK
Sbjct: 79 YAAIRDNYFRS------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 117 SDMTSHHRAVHLED 130
SD+ R V +E+
Sbjct: 133 SDL-EDKRQVSVEE 145
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D P
Sbjct: 56 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-- 113
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
FLLV + + LE + V + R ++ + +E SAK N+ +VF
Sbjct: 114 ----------FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P
Sbjct: 56 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPF 114
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +E+
Sbjct: 115 LLVGNKSDL-EDKRQVSVEE 133
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ + D
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGQED 66
Query: 72 MTS----HHRAVHLEDVSEWLYC--ELPKLRYVIQSSSFGDEI---------PIVVAGNK 116
+ + R+ E C + ++ ++ F ++I P ++ GNK
Sbjct: 67 YAAIRDNYFRS------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 117 SDMTSHHRAVHLED 130
SD+ R V +E+
Sbjct: 121 SDL-EDKRQVSVEE 133
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+
Sbjct: 112 VLVGNKCDLAG 122
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV++G GVGKS + + + N + D Y T+ED Y + + T + AG +
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE- 63
Query: 72 MTSHHRAVHLEDVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
S R ++ E C ++ + R I+ D++P+V+ GNK D+
Sbjct: 64 -YSAMRDQYMR-TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 121 S 121
Sbjct: 122 G 122
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D P
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-- 121
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
FLLV + + LE + V + R ++ + +E SAK N+ +VF
Sbjct: 122 ----------FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P
Sbjct: 64 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPF 122
Query: 205 VVAGNKSDMTSHHRAVHLEDV 225
++ GNKSD+ R V +E+
Sbjct: 123 LLVGNKSDL-EDKRQVSVEEA 142
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 23/135 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ + D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGQED 74
Query: 72 MTS----HHRAVHLEDVSEWLYC--ELPKLRYVIQSSSFGDEI---------PIVVAGNK 116
+ + R+ E C + ++ ++ F ++I P ++ GNK
Sbjct: 75 YAAIRDNYFRS------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 117 SDMTSHHRAVHLEDV 131
SD+ R V +E+
Sbjct: 129 SDL-EDKRQVSVEEA 142
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG++ S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--YSAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 7/72 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQE 201
++ILDT G QF AMR L + F LVYS T +F +++REQ +D +
Sbjct: 55 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQILRVKDTDD 110
Query: 202 IPIVVAGNKSDM 213
+P+++ GNK D+
Sbjct: 111 VPMILVGNKCDL 122
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G QF AMR L + F LVYS T +F +++REQ +
Sbjct: 55 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFND----LQDLREQ--------I 102
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
R+ +LV + LE + V K + + Q + LE SAK N+ E+F
Sbjct: 103 LRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V A + AG ++
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG--TE 64
Query: 72 MTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+ R +++++ ++ + +L LR I D++P+++ GNK D+
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-E 123
Query: 122 HHRAVHLED----VSEWLYC 137
R V E +W C
Sbjct: 124 DERVVGKEQGQNLARQWNNC 143
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQE 201
++ILDT G QF AMR L + F LVYS T +F + +++REQ +D +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQILRVKDTDD 108
Query: 202 IPIVVAGNKSDMTSHHRAVHLE 223
+P+++ GNK D+ R V E
Sbjct: 109 VPMILVGNKCDL-EDERVVGKE 129
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++ILDT G QF AMR L + F LVYS T +F + +++REQ +
Sbjct: 53 LEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL----QDLREQ--------I 100
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
R+ +LV + LE + V K + + Q + LE SAK N+ E+F
Sbjct: 101 LRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V A + AG ++
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG--TE 62
Query: 72 MTSHHRAVHLED----------VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+ R +++++ ++ + +L LR I D++P+++ GNK D+
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-E 121
Query: 122 HHRAVHLED----VSEWLYC 137
R V E +W C
Sbjct: 122 DERVVGKEQGQNLARQWNNC 141
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + I+ G + + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTGGQEEY-SAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + D ++P+
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPM 129
Query: 205 VVAGNKSDMTSH 216
V+ GNK D+ +
Sbjct: 130 VLVGNKCDLPTR 141
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + P +
Sbjct: 71 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVK-----CYFEEIREQRQ 322
R + AH Y +E+ + ++ +RE RQ
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPF 112
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +E+
Sbjct: 113 LLVGNKSDL-EDKRQVSVEE 131
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D P
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-- 111
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
FLLV + + LE + V + R + + +E SAK N+ +VF
Sbjct: 112 ----------FLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVF 158
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 61/134 (45%), Gaps = 23/134 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSD 71
+++++G GVGKS + +F+++ + + Y T D Y + + + +I I+ + D
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV-QIDILDTAGQED 64
Query: 72 MTS----HHRAVHLEDVSEWLYC--ELPKLRYVIQSSSFGDEI---------PIVVAGNK 116
+ + R+ E C + ++ ++ F ++I P ++ GNK
Sbjct: 65 YAAIRDNYFRS------GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118
Query: 117 SDMTSHHRAVHLED 130
SD+ R V +E+
Sbjct: 119 SDL-EDKRQVSVEE 131
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GN+ D+ +
Sbjct: 112 VLVGNRCDLAA 122
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 ---RRLSIAT-----------AHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R +A A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 116
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 117 VLVGNKCDLAA 127
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 58 LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 170
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D P
Sbjct: 56 IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVP-- 113
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
FLLV + + LE + V + R ++ + +E SAK N+ +VF
Sbjct: 114 ----------FLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 160
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P
Sbjct: 56 IDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPF 114
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +E+
Sbjct: 115 LLVGNKSDL-EDKRQVSVEE 133
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR 49
+++++G GVGKS + +F+++ + + Y T D Y +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK 45
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKXDLAA 122
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKXDLAA 122
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+DILDT G + AMR + T FL V++ +SF+ + Y E+I+ + D ++P+
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPM 111
Query: 205 VVAGNKSDMTS 215
V+ GNK D+ +
Sbjct: 112 VLVGNKCDLAA 122
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+DILDT G + AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 53 LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 285 --------------RRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQ 322
R + A ++ + Y T ++ Q V+ ++ +RE RQ
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 23 KSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82
KS + + + N + D Y T+ED Y + + T + AG + S R ++
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE--ASAMRDQYMR 73
Query: 83 DVSEWLYC-----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
E C ++ + R I+ D++P+V+ GNK D+ +
Sbjct: 74 -TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ ++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E + +P
Sbjct: 73 HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR-VP 131
Query: 204 IVVAGNKSDMTSHHRAVHLEDVDILDTCG 232
+V+ GNK+D++ +E + ++ G
Sbjct: 132 VVLVGNKADLSPEREVQAVEGKKLAESWG 160
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E + P +
Sbjct: 76 LVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV 133
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 22/124 (17%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR-------DFHVGAV-------- 56
++VILG + VGK+ + +F+ +S+ Y TVE+ YS+ +FH+ V
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 57 TIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNK 116
+I ++ + + ++H V E LY +L +P+V+ GNK
Sbjct: 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL-------HEGHGKTRVPVVLVGNK 138
Query: 117 SDMT 120
+D++
Sbjct: 139 ADLS 142
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 289 IATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319
I H ++LVYS T L SFQ ++ ++++ E
Sbjct: 93 IIGVHGYVLVYSVTSLHSFQVIESLYQKLHE 123
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V F ++ + +D + P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPM 126
Query: 205 VVAGNKSDMTSHHRAV 220
++ NK D+ H R V
Sbjct: 127 ILVANKVDLM-HLRKV 141
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 280 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQRQDFQLLECSAK-DNYN 336
+F AMR + T FL+VYS T SF+ V + + I + R+ F ++ + K D +
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 337 IKEVFR 342
+++V R
Sbjct: 138 LRKVTR 143
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V F ++ + +D + P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPM 126
Query: 205 VVAGNKSDMTSHHRAV 220
++ NK D+ H R V
Sbjct: 127 ILVANKVDLM-HLRKV 141
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 280 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQRQDFQLLECSAK-DNYN 336
+F AMR + T FL+VYS T SF+ V + + I + R+ F ++ + K D +
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 337 IKEVFR 342
+++V R
Sbjct: 138 LRKVTR 143
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V F ++ + +D + P+
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPM 121
Query: 205 VVAGNKSDMTSHHRAV 220
++ NK D+ H R V
Sbjct: 122 ILVANKVDLM-HLRKV 136
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 63 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 122
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 280 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQRQDFQLLECSAK-DNYN 336
+F AMR + T FL+VYS T SF+ V + + I + R+ F ++ + K D +
Sbjct: 73 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 132
Query: 337 IKEVFR 342
+++V R
Sbjct: 133 LRKVTR 138
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V F ++ + +D + P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPM 126
Query: 205 VVAGNKSDMTSHHRAV 220
++ NK D+ H R V
Sbjct: 127 ILVANKVDLM-HLRKV 141
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 280 QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQRQDFQLLECSAK-DNYN 336
+F AMR + T FL+VYS T SF+ V + + I + R+ F ++ + K D +
Sbjct: 78 EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137
Query: 337 IKEVFR 342
+++V R
Sbjct: 138 LRKVTR 143
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F ++ AHA LL+Y T SF +++ + EI E Q ++ +++
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALML 121
Query: 207 AGNKSDMTSHHRAVHLED 224
GNK D ++H R V ED
Sbjct: 122 LGNKVD-SAHERVVKRED 138
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277
+ DT G +F ++ AHA LL+Y T SF +++ + EI E Q
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322
AHA LL+Y T SF +++ + EI E Q
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQ 114
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 20/133 (15%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTY-SDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN- 68
+++++G GVGK+C+L RF + + + STV D ++ V V +K AG
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 69 --KSDMTSHHRAVH----LEDVS-----EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKS 117
+S +++R H L DV+ + + L ++ Q ++ +++ GNK
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH-----DVALMLLGNKV 126
Query: 118 DMTSHHRAVHLED 130
D ++H R V ED
Sbjct: 127 D-SAHERVVKRED 138
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 26/127 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY + + ++ G
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWL-QEID--RYA------SENVNKLLVG 121
Query: 115 NKSDMTS 121
NKSD+T+
Sbjct: 122 NKSDLTT 128
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ES+ +VK + +EI R + + ++
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLL 119
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNKSD+T+ + + D+ G
Sbjct: 120 VGNKSDLTTKKVVDNTTAKEFADSLG 145
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI-REQRQDFQFPAMR 285
I DT G +F + AH ++VY T ES+ +VK + +EI R ++ +
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVG 121
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
S T +V +TT E S+ F LE SAK+ N+++ F T
Sbjct: 122 NKSDLTTKK--VVDNTTAKEFADSLGIPF------------LETSAKNATNVEQAFMTM 166
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 26/127 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 70
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY ++ + ++ G
Sbjct: 71 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWL-QEID--RYASEN------VNKLLVG 121
Query: 115 NKSDMTS 121
NKSD+T+
Sbjct: 122 NKSDLTT 128
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ES+ +VK + +EI R + + ++
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLL 119
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNKSD+T+ + + D+ G
Sbjct: 120 VGNKSDLTTKKVVDNTTAKEFADSLG 145
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + AH ++VY T ES+ +VK + +EI + + +
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDR----YASENVNK 117
Query: 287 LSIATAHAFL---LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
L + +V +TT E S+ F LE SAK+ N+++ F T
Sbjct: 118 LLVGNKSDLTTKKVVDNTTAKEFADSLGIPF------------LETSAKNATNVEQAFMT 165
Query: 344 F 344
Sbjct: 166 M 166
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY + + ++ G
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYA------SENVNKLLVG 111
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 112 NKCDLTTKK 120
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 52 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 109
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 110 VGNKCDLTTKKVVDYTTAKEFADSLG 135
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 52 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 97
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 72 AHGIIVVYDVTDQESFNNVKQWLQEI 97
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY + + ++ G
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYA------SENVNKLLVG 118
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 119 NKCDLTTKK 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 116
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 117 VGNKCDLTTKKVVDYTTAKEFADSLG 142
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 67
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY + + ++ G
Sbjct: 68 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYA------SENVNKLLVG 118
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 119 NKCDLTTKK 127
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 116
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 117 VGNKCDLTTKKVVDYTTAKEFADSLG 142
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 59 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 104
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 79 AHGIIVVYDVTDQESFNNVKQWLQEI 104
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + A ++VY T + SFQ + +++R
Sbjct: 46 KTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 105
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 106 TER-------------GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 153 GYNVKQLFR 161
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + A ++VY T +
Sbjct: 34 TYQATIGIDFLSKTMYLEDRTIR-LQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVN 92
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R V +E+
Sbjct: 93 SFQQTTKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQVSIEE 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ TI+ AG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ 65
Query: 69 ---KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF--------GDEIPIVVAGNKS 117
+S + S+ R + + + ++ + Q++ + G ++ I++ GNK+
Sbjct: 66 ERFRSLIPSYIR----DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 118 DMTSHHRAVHLED 130
D+ + R V +E+
Sbjct: 122 DL-ADKRQVSIEE 133
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY ++ + ++ G
Sbjct: 95 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYASEN------VNKLLVG 145
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 146 NKCDLTTKK 154
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 143
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 144 VGNKCDLTTKKVVDYTTAKEFADSLG 169
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEI 131
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ++F K + +E+ QRQ I I
Sbjct: 57 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIA 114
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+AGNK+D+ S RAV ++
Sbjct: 115 LAGNKADLAS-KRAVEFQEA 133
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+I DT G ++ ++ + A A ++VY T ++F K + +E++ Q A
Sbjct: 57 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ-------ASP 109
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ IA A + S +E FQ + Y ++ +E SAK N+ E+F
Sbjct: 110 NIVIALAGNKADLASKRAVE-FQEAQAYADD-----NSLLFMETSAKTAMNVNEIF 159
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLY 47
+ +LV+LG VGKS ++ RF+ + + ST++ +
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAF 42
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 86
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY ++ + ++ G
Sbjct: 87 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYASEN------VNKLLVG 137
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 138 NKCDLTTKK 146
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 78 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 135
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLG 161
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 78 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 123
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 98 AHGIIVVYDVTDQESFNNVKQWLQEI 123
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY ++ + ++ G
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYASEN------VNKLLVG 128
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 129 NKCDLTTKK 137
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 126
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLG 152
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T E+F K + +E+ QRQ I I
Sbjct: 60 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIA 117
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+AGNK+D+ ++ R V E+
Sbjct: 118 LAGNKADL-ANKRMVEYEEA 136
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+I DT G ++ ++ + A A ++VY T E+F K + +E++ Q A
Sbjct: 60 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQ-------ASP 112
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL--ECSAKDNYNIKEVF 341
+ IA A + + +E +EE + D LL E SAK N+ ++F
Sbjct: 113 SIVIALAGNKADLANKRMVE--------YEEAQAYADDNSLLFMETSAKTAMNVNDLF 162
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+ +LV+LG VGKS ++ RF+ + + ST+
Sbjct: 8 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 41
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 59 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 116
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 117 LSGNKADL-ANKRAVDFQEA 135
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 28 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 84
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 85 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 136
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 137 SYADD-----NSLLFMETSAKTSMNVNEIF 161
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ++F K + +E+ QRQ I I
Sbjct: 55 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIA 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+AGNK+D+ S RAV ++
Sbjct: 113 LAGNKADLAS-KRAVEFQE 130
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+I DT G ++ ++ + A A ++VY T ++F K + +E++ Q A
Sbjct: 55 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ-------ASP 107
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ IA A + S +E FQ + Y ++ +E SAK N+ E+F
Sbjct: 108 NIVIALAGNKADLASKRAVE-FQEAQAYADD-----NSLLFMETSAKTAMNVNEIF 157
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+ +LV+LG VGKS ++ RF+ + + ST+
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 36
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 115
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 116 LSGNKADL-ANKRAVDFQEA 134
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 27 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPMYYRGAQAAI 83
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 84 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 135
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 136 SYADD-----NSLLFMETSAKTSMNVNEIF 160
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 26/127 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY+D Y ST+ D R + T+K AG
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQER 70
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H ++V +W+ E+ RY +++ + ++ G
Sbjct: 71 FRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQ-EID--RYAMEN------VNKLLVG 121
Query: 115 NKSDMTS 121
NK D+ S
Sbjct: 122 NKCDLVS 128
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T +SF +VK + +EI R + + ++
Sbjct: 62 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLL 119
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+ S E ++ D+ G
Sbjct: 120 VGNKCDLVSKRVVTSDEGRELADSHG 145
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
R + LE+ + I DT G +F + AH ++VY T +SF +VK + +EI
Sbjct: 49 RTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEID 108
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSA 331
AM ++ LLV + L S + V +E RE + +E SA
Sbjct: 109 RY-------AMENVNK------LLVGNKCDLVSKRVVTS--DEGRELADSHGIKFIETSA 153
Query: 332 KDNYNIKEVFRTF 344
K+ YN+++ F T
Sbjct: 154 KNAYNVEQAFHTM 166
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + ++VY T L SFQ + +++R
Sbjct: 42 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVR 101
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + + E R + +E SAK
Sbjct: 102 TER-------------GSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKT 148
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 149 GYNVKQLFR 157
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + ++VY T L
Sbjct: 30 TYQATIGIDFLSKTMYLEDRTVR-LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLN 88
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R + +E+
Sbjct: 89 SFQQTSKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQITIEE 129
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ AG
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 61
Query: 69 KSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF--------GDEIPIVVAGNKSDMT 120
+ + + V+ +Y ++ L Q+S + G ++ I++ GNK+D+
Sbjct: 62 ERFRSLIPSYIRDSTVAVVVY-DITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDL- 119
Query: 121 SHHRAVHLED 130
+ R + +E+
Sbjct: 120 ADKRQITIEE 129
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 26/129 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGK+C+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 77
Query: 69 -KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ +S++R H +V +WL E+ RY + + ++ G
Sbjct: 78 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYA------SENVNKLLVG 128
Query: 115 NKSDMTSHH 123
NK D+T+
Sbjct: 129 NKCDLTTKK 137
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 126
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
GNK D+T+ + + D+ G
Sbjct: 127 VGNKCDLTTKKVVDYTTAKEFADSLG 152
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 89 AHGIIVVYDVTDQESFNNVKQWLQEI 114
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 69 -KSDMTSHHRAVH 80
++ +S++R H
Sbjct: 70 FRTITSSYYRGAH 82
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + AH ++VY T ESF +VK + +EI R + + ++
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLL 118
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCG 232
G K D+T+ + + D+ G
Sbjct: 119 VGIKCDLTTKKVVDYTTAKEFADSLG 144
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 106
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 81 AHGIIVVYDVTDQESFNNVKQWLQEI 106
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + A ++VY T + SFQ + +++R
Sbjct: 53 KTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR 112
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 113 TER-------------GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 159
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 160 GYNVKQLFR 168
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + A ++VY T +
Sbjct: 41 TYQATIGIDFLSKTMYLEDRTIR-LQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVN 99
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R V +E+
Sbjct: 100 SFQQTTKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQVSIEE 140
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 70/133 (52%), Gaps = 17/133 (12%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG- 67
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ TI+ AG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGL 72
Query: 68 --NKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF--------GDEIPIVVAGNKS 117
+S + S+ R + + + ++ + Q++ + G ++ I++ GNK+
Sbjct: 73 ERFRSLIPSYIR----DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 118 DMTSHHRAVHLED 130
D+ + R V +E+
Sbjct: 129 DL-ADKRQVSIEE 140
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 26/126 (20%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN--- 68
L+++G GVGKSC+L RF +TY++ Y ST+ D R + TIK AG
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 69 KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGN 115
++ +S++R H +V +WL E+ RY + + ++ GN
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQ-EID--RYA------SENVNKLLVGN 111
Query: 116 KSDMTS 121
K D+T+
Sbjct: 112 KCDLTT 117
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + AH ++VY T ESF +VK + +EI R + +
Sbjct: 49 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNK 106
Query: 205 VVAGNKSDMTS 215
++ GNK D+T+
Sbjct: 107 LLVGNKCDLTT 117
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+ I DT G +F + AH ++VY T ESF +VK + +EI
Sbjct: 49 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 96
Score = 28.1 bits (61), Expect = 8.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEI 317
AH ++VY T ESF +VK + +EI
Sbjct: 71 AHGIIVVYDVTDQESFNNVKQWLQEI 96
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 59 EIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 116
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 117 LSGNKADL-ANKRAVDFQEA 135
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ A A +
Sbjct: 28 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGQERYHSLAPXYYRGAQAAI 84
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA L + L + ++V
Sbjct: 85 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIA------LSGNKADLANKRAVD 131
Query: 312 CYFEEIREQRQDFQLL--ECSAKDNYNIKEVF 341
F+E + D LL E SAK + N+ E+F
Sbjct: 132 --FQEAQSYADDNSLLFXETSAKTSXNVNEIF 161
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ++F K + +E+ QRQ I I
Sbjct: 57 EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIA 114
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+AGNK+D+ S RAV ++
Sbjct: 115 LAGNKADLAS-KRAVEFQEA 133
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+I DT G ++ ++ + A A ++VY T ++F K + +E++ Q A
Sbjct: 57 EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ-------ASP 109
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ IA A + S +E FQ + Y ++ +E SAK N+ E+F
Sbjct: 110 NIVIALAGNKADLASKRAVE-FQEAQAYADD-----NSLLFMETSAKTAMNVNEIF 159
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+ +LV+LG VGKS ++ RF+ + + ST+
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 38
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++VY T ESF K + +E+ QRQ I I
Sbjct: 57 EIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIA 114
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
++GNK+D+ ++ RAV ++
Sbjct: 115 LSGNKADL-ANKRAVDFQEA 133
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ Q +FQE I A + V E I DT G ++ ++ + A A +
Sbjct: 26 VKGQFHEFQESTIGAAFLTQTVCLDDTTVKFE---IWDTAGLERYHSLAPMYYRGAQAAI 82
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+VY T ESF K + +E++ Q A + IA + + + ++ FQ +
Sbjct: 83 VVYDITNEESFARAKNWVKELQRQ-------ASPNIVIALSGNKADLANKRAVD-FQEAQ 134
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Y ++ +E SAK + N+ E+F
Sbjct: 135 SYADD-----NSLLFMETSAKTSMNVNEIF 159
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + ++VY T + SFQ + +++R
Sbjct: 41 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 100
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 101 TER-------------GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 147
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 148 GYNVKQLFR 156
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + ++VY T +
Sbjct: 29 TYQATIGIDFLSKTMYLEDRTVR-LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVN 87
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R V +E+
Sbjct: 88 SFQQTTKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQVSIEE 128
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 72/130 (55%), Gaps = 11/130 (8%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ AG
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69 ---KSDMTSHHR----AVHLEDVSEW-LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
+S + S+ R AV + D++ + + K +++ G ++ I++ GNK+D+
Sbjct: 61 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDL- 118
Query: 121 SHHRAVHLED 130
+ R V +E+
Sbjct: 119 ADKRQVSIEE 128
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY T SF++++ + +E+R+ I I++
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNAD--SNIVILL 118
Query: 207 AGNKSDMTSHHRAVHLEDV 225
GNKSD+ H R ++ D
Sbjct: 119 VGNKSDL-KHLRVINDNDA 136
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 38/157 (24%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV------V 65
++V++G GVGKS +L RF + ++ +ST+ +F ++ +K I+
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTI----GVEFATKSIQLKNNKIIKAQIWDT 64
Query: 66 AGN---KSDMTSHHRAV-------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ ++++R E++ +W L +LR S+ I
Sbjct: 65 AGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW----LKELRDNADSN-----IV 115
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVD 146
I++ GNKSD+ H R ++ D ++ Y + KL +++
Sbjct: 116 ILLVGNKSDL-KHLRVINDNDATQ--YAKKEKLAFIE 149
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
I DT G ++ A+ A LLVY T SF++++ + +E+R+
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDN 109
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + ++VY T + SFQ + +++R
Sbjct: 56 KTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 115
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 116 TER-------------GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 162
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 163 GYNVKQLFR 171
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + ++VY T +
Sbjct: 44 TYQATIGIDFLSKTMYLEDRTVR-LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVN 102
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R V +E+
Sbjct: 103 SFQQTTKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQVSIEE 143
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG- 67
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ AG
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 75
Query: 68 --NKSDMTSHHR----AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+S + S+ R AV + D++ + + G ++ I++ GNK+D+ +
Sbjct: 76 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-A 134
Query: 122 HHRAVHLED 130
R V +E+
Sbjct: 135 DKRQVSIEE 143
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + ++VY T + SFQ + +++R
Sbjct: 46 KTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVR 105
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 106 TER-------------GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 152
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 153 GYNVKQLFR 161
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + ++VY T +
Sbjct: 34 TYQATIGIDFLSKTMYLEDRTVR-LQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVN 92
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SFQ + +++R +R ++ I++ GNK+D+ + R V +E+
Sbjct: 93 SFQQTTKWIDDVRTERG--SDVIIMLVGNKTDL-ADKRQVSIEE 133
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG- 67
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ AG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGL 65
Query: 68 --NKSDMTSHHR----AVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
+S + S+ R AV + D++ + + G ++ I++ GNK+D+ +
Sbjct: 66 ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-A 124
Query: 122 HHRAVHLED 130
R V +E+
Sbjct: 125 DKRQVSIEE 133
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 81
Query: 69 -KSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I++ G
Sbjct: 82 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIMLVG 132
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 133 NKSDL-RHLRAV 143
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I++
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIML 130
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
GNKSD+ H RAV ++ L F
Sbjct: 131 VGNKSDL-RHLRAVPTDEARAFAEKNGLSF 159
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 73 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 123
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ +LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 124 ----SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 179
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 90
Query: 69 -KSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I++ G
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIMLVG 141
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 142 NKSDL-RHLRAV 152
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I++
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIML 139
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
GNKSD+ H RAV ++ L F
Sbjct: 140 VGNKSDL-RHLRAVPTDEARAFAEKNGLSF 168
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 132
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ +LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 133 ----SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F A+ + + A ++VY T E+F ++K + E+R+ I + +
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAI 115
Query: 207 AGNKSDMTSHHRAVHLEDVDILDT 230
AGNK D+T + + D D+
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADS 139
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 33/125 (26%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F A+ + + A ++VY T E+F ++K + E+R+
Sbjct: 58 IWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP-------- 109
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE----QRQDFQ------LLECSAKDNYN 336
SI A A KC ++RE +D+ +E SAK+ N
Sbjct: 110 -SIVVAIA--------------GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 154
Query: 337 IKEVF 341
I E+F
Sbjct: 155 INELF 159
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 114 GNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLV 173
G D A H D S + E L DI + G P +A A+++V
Sbjct: 28 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIV 84
Query: 174 YSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214
YS T SF+ ++R RQ ++PI++ GNKSD+
Sbjct: 85 YSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLV 124
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 114 GNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLV 173
G D A H D S + E L DI + G P +A A+++V
Sbjct: 23 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIV 79
Query: 174 YSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214
YS T SF+ ++R RQ ++PI++ GNKSD+
Sbjct: 80 YSVTDKGSFEKASELRVQLRRARQT-DDVPIILVGNKSDLV 119
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 114 GNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLV 173
G D A H D S + E L DI + G P +A A+++V
Sbjct: 28 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH---CMAMGDAYVIV 84
Query: 174 YSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214
YS T SF+ ++R RQ ++PI++ GNKSD+
Sbjct: 85 YSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLV 124
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 10 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 69
Query: 68 NKSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I++ G
Sbjct: 70 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIMLVG 120
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 121 NKSDL-RHLRAV 131
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I++
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIML 118
Query: 207 AGNKSDMTSHHRAV 220
GNKSD+ H RAV
Sbjct: 119 VGNKSDL-RHLRAV 131
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 111
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ +LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 112 ----SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 218 RAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273
+ ++LED + + DT G +F ++ I + ++VY T SF + +++R
Sbjct: 54 KTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVR 113
Query: 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
+R + +LV + T L + V E + + + +E SAK
Sbjct: 114 TER-------------GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKA 160
Query: 334 NYNIKEVFR 342
YN+K++FR
Sbjct: 161 GYNVKQLFR 169
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 27/138 (19%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ AG
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 73
Query: 69 ---KSDMTSHHR----AVHLEDV---------SEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+S + S+ R AV + D+ S+W + +R + G ++ I++
Sbjct: 74 ERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW----IDDVR-----TERGSDVIIML 124
Query: 113 AGNKSDMTSHHRAVHLED 130
GNK+D+ S R V E+
Sbjct: 125 VGNKTDL-SDKRQVSTEE 141
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ +Y E +R + + DT G +F ++ I + ++VY T
Sbjct: 42 TYQATIGIDFLSKTMYLEDRTVR-LQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTN 100
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
SF + +++R +R ++ I++ GNK+D+ S R V E+
Sbjct: 101 SFHQTSKWIDDVRTERG--SDVIIMLVGNKTDL-SDKRQVSTEE 141
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+ + EI + +
Sbjct: 59 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCI 116
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 117 VGNKIDL 123
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274
++ I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+
Sbjct: 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+ + EI + +
Sbjct: 59 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCI 116
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 117 VGNKIDL 123
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274
++ I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+
Sbjct: 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 106
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 32/128 (25%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKS 70
++V+LG VGK+ ++ R+ N ++D++ +T++ ++ ++G + AG +
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 71 -------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIV 111
D+T + V W+ EL K+ G+EI +
Sbjct: 68 FHALGPIYYRDSNGAILVYDITDEDS---FQKVKNWVK-ELRKM--------LGNEICLC 115
Query: 112 VAGNKSDM 119
+ GNK D+
Sbjct: 116 IVGNKIDL 123
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+ + EI + +
Sbjct: 73 IWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCI 130
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 131 VGNKIDL 137
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274
++ I DT G +F A+ + ++ +LVY T +SFQ VK + +E+R+
Sbjct: 70 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK 120
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 69 -KSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ ++++R A HL E+V W L +LR S+ I I++ G
Sbjct: 67 YRRITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIMLVG 117
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 118 NKSDL-RHLRAV 128
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 20/134 (14%)
Query: 147 ILDTCGDLQFPAMRRLSIA---TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
I DT G ++ RR++ A A LLVY ++++V+ + +E+R+ I
Sbjct: 58 IWDTAGQERY---RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIV 112
Query: 204 IVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ 263
I++ GNKSD+ H RAV ++ +L F L ST E+F+
Sbjct: 113 IMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALD-----------STNVEEAFK 160
Query: 264 SVKCYFEEIREQRQ 277
++ I Q+Q
Sbjct: 161 NILTEIYRIVSQKQ 174
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 66
Query: 68 NKSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I + G
Sbjct: 67 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIXLVG 117
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 118 NKSDL-RHLRAV 128
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I +
Sbjct: 58 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIXL 115
Query: 207 AGNKSDMTSHHRAV 220
GNKSD+ H RAV
Sbjct: 116 VGNKSDL-RHLRAV 128
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 58 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 108
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 109 ----SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 164
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 72
Query: 68 NKSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I + G
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIXLVG 123
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 124 NKSDL-RHLRAV 134
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I +
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIXL 121
Query: 207 AGNKSDMTSHHRAV 220
GNKSD+ H RAV
Sbjct: 122 VGNKSDL-RHLRAV 134
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 114
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 115 ----SNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 170
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D + + T+K AG
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 69 -KSDMTSHHRAVH 80
++ +S++R H
Sbjct: 70 FRTITSSYYRGSH 82
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + +H ++VY T ESF VK + +EI R + ++
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLL 118
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 119 VGNKCDL 125
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + +H ++VY T ESF VK + +EI
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------ 108
Query: 287 LSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345
AT+ L+ C L+ + V+ + LE SA D+ N+++ FL
Sbjct: 109 --YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA---FL 163
Query: 346 TLSQILTTNGDENSLKRRSSAYVNKGKV 373
T+++ + + + +L + +KG V
Sbjct: 164 TMARQIKESMSQQNLNETTQKKEDKGNV 191
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 27/132 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK AG
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 68 NKSDMTSHHR-----------AVHL--EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
++ ++++R A HL E+V W L +LR S+ I I++ G
Sbjct: 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERW----LKELRDHADSN-----IVIMLVG 141
Query: 115 NKSDMTSHHRAV 126
NKSD+ H RAV
Sbjct: 142 NKSDL-RHLRAV 152
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A LLVY ++++V+ + +E+R+ I I++
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIML 139
Query: 207 AGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
GNKSD+ H RAV ++ L F
Sbjct: 140 VGNKSDL-RHLRAVPTDEARAFAEKNGLSF 168
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ A+ A LLVY ++++V+ + +E+R+
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--------- 132
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ +LV + + L ++V ++ +E SA D+ N++ F+T LT
Sbjct: 133 ----SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D + + T+K AG
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 69 -KSDMTSHHRAVH 80
++ +S++R H
Sbjct: 70 FRTITSSYYRGSH 82
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + +H ++VY T ESF VK + +EI R + ++
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLL 118
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 119 VGNKCDL 125
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 18/148 (12%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + +H ++VY T ESF VK + +EI
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------ 108
Query: 287 LSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345
AT+ L+ C L+ + V+ + LE SA D+ N+++ FL
Sbjct: 109 --YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA---FL 163
Query: 346 TLSQILTTNGDENSLKRRSSAYVNKGKV 373
T+++ + + + +L + +KG V
Sbjct: 164 TMARQIKESMSQQNLNETTQKKEDKGNV 191
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + A +LVY T +F ++K +F+ + E D E +++
Sbjct: 56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLL 113
Query: 207 AGNKSDMTSH 216
GNKSDM +
Sbjct: 114 VGNKSDMETR 123
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDT 59
Query: 66 AGN---KSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSD 118
AG ++ T+++R + + D+++ K + + DE +++ GNKSD
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 119 MTSHHRAVHLEDVSEWLYCEL 139
M + V D E L EL
Sbjct: 120 METR---VVTADQGEALAKEL 137
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + A +LVY T +F ++K +F+ + E D
Sbjct: 56 IWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND-------- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
LLV + + +E+ + V E + +E SAK++ N+ E+F T
Sbjct: 108 -----EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
Query: 347 LSQ 349
L Q
Sbjct: 162 LIQ 164
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDF 279
+ ++ + DT G + +R LS A F+L +S S+++V K + E+R +
Sbjct: 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNV 114
Query: 280 QFPAM-RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIK 338
+ +L + +L + T + S Q EE+R+Q +ECS+K N+K
Sbjct: 115 PIVLVGTKLDLRDDKGYLADH-TNVITSTQG-----EELRKQIGAAAYIECSSKTQQNVK 168
Query: 339 EVFRTFLTL 347
VF T + +
Sbjct: 169 AVFDTAIKV 177
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIP 203
+ + DT G + +R LS A F+L +S S+++V K + E+R + +P
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VP 115
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 116 IVLVGTKLDL 125
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+ V +G VGK+C+L + N + Y TV D +S + V + AG +
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71 DMTSHHRAVHLEDVSEWLYCELPKLRY-------VIQSSSFGDEIPIVVAGNKSDM 119
+ D+ + + K Y + + F +PIV+ G K D+
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 141 KLRYVDI---------LDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 191
K++ VDI DT G +F + A +LVY T +F ++K +F+
Sbjct: 58 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 117
Query: 192 IREQRQDFQEIPIVVAGNKSDM 213
+ E D E +++ GNKSDM
Sbjct: 118 VNEHAND--EAQLLLVGNKSDM 137
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 20/145 (13%)
Query: 216 HHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
+ + V L+ + DT G +F + A +LVY T +F ++K +F+ + E
Sbjct: 65 NGKKVKLQ---LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
D LLV + + +E+ + V E + +E SAK++
Sbjct: 122 AND-------------EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 167
Query: 336 NIKEVFRTFLTLSQILTTNGDENSL 360
N+ E+ F TL++++ D N L
Sbjct: 168 NVNEI---FFTLAKLIQEKIDSNKL 189
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDT 76
Query: 66 AGN---KSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSD 118
AG ++ T+++R + + DV++ K + + DE +++ GNKSD
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 119 MTSHHRAVHLEDVSEWLYCEL 139
M + V D E L EL
Sbjct: 137 METR---VVTADQGEALAKEL 154
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+++G GVGKSC+L RF +TY++ Y ST+ D + + T+K AG
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 69 -KSDMTSHHRAVH 80
++ +S++R H
Sbjct: 83 FRTITSSYYRGSH 95
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + +H ++VY T ESF VK + +EI R + ++
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLL 131
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 132 VGNKCDL 138
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 15/119 (12%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + +H ++VY T ESF VK + +EI
Sbjct: 74 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR------------ 121
Query: 287 LSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
AT+ L+ C L+ + V+ + LE SA D+ N+++ F T
Sbjct: 122 --YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM 178
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 16/136 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ I DT G +F ++ + +A+A +L Y TC ESF+ + + EI Q+ +
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIE------QYASN 130
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
+ +++ + L E + + EE E QD LE SAK++ N++++ F
Sbjct: 131 KVITVLVGNKIDLA------ERREVSQQRAEEFSEA-QDMYYLETSAKESDNVEKL---F 180
Query: 345 LTLSQILTTNGDENSL 360
L L+ L + +N+L
Sbjct: 181 LDLACRLISEARQNTL 196
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGK+C+++RF + +T+ D + + +K AG
Sbjct: 28 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 87
Query: 69 -KSDMTSHHRAVHLEDVSEWLYCE-----LPK-LRYVIQSSSFGDEIPIVVAGNKSDMT- 120
+S S++R+ + ++ + CE LP+ LR + Q +S +++ V+ GNK D+
Sbjct: 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE 145
Query: 121 ----SHHRAVHLEDVSEWLYCE 138
S RA + + Y E
Sbjct: 146 RREVSQQRAEEFSEAQDMYYLE 167
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F ++ + +A+A +L Y TC ESF+ + + EI + + ++
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN--KVIT 134
Query: 205 VVAGNKSDMT-----SHHRA 219
V+ GNK D+ S RA
Sbjct: 135 VLVGNKIDLAERREVSQQRA 154
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F A+ + + A ++VY T E+F ++K + E+R+ I + +
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAI 116
Query: 207 AGNKSDMTSHHRAVHLEDVDILDT 230
AGNK D+T + + D D+
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADS 140
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 33/125 (26%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F A+ + + A ++VY T E+F ++K + E+R+
Sbjct: 59 IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP-------- 110
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE----QRQDFQ------LLECSAKDNYN 336
SI A A KC ++RE +D+ +E SAK+ N
Sbjct: 111 -SIVVAIA--------------GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155
Query: 337 IKEVF 341
I E+F
Sbjct: 156 INELF 160
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G +F ++ + A LL+Y TC +SF +++ + + I + + +PI
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPI 136
Query: 205 VVAGNKSDM 213
++ GNK+D+
Sbjct: 137 MLVGNKADI 145
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 57/143 (39%), Gaps = 19/143 (13%)
Query: 198 DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT 257
DFQ ++V G ++ + + DT G +F ++ + A LL+Y T
Sbjct: 64 DFQMKTLIVDGERTVL------------QLWDTAGQERFRSIAKSYFRKADGVLLLYDVT 111
Query: 258 CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 317
C +SF +++ + + I + + P M + A + T E + V +F E
Sbjct: 112 CEKSFLNIREWVDMIEDAAHE-TVPIMLVGNKAD------IRDTAATEGQKCVPGHFGEK 164
Query: 318 REQRQDFQLLECSAKDNYNIKEV 340
E SAKD NI E
Sbjct: 165 LAMTYGALFCETSAKDGSNIVEA 187
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 32/140 (22%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHV--GAVTIK------- 59
+ +LV LG Q VGK+ I+ RF ++T+ + Y+ST+ D S+ ++ G V ++
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 60 -----EIPIVVAGNKS-----DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
IP + + + D+T+ E+ ++W+ L + G ++
Sbjct: 61 ERFRSLIPSYIRDSAAAIVVYDITNRQ---SFENTTKWIQDIL---------NERGKDVI 108
Query: 110 IVVAGNKSDMTSHHRAVHLE 129
I + GNK+D+ + + E
Sbjct: 109 IALVGNKTDLGDLRKVTYEE 128
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE 180
++ + ++ +S+ LY + +R + + DT G +F ++ I + A ++VY T +
Sbjct: 29 NYQSTIGIDFLSKTLYLDEGPVR-LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQ 87
Query: 181 SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
SF++ + ++I +R +++ I + GNK+D+ + + E
Sbjct: 88 SFENTTKWIQDILNERG--KDVIIALVGNKTDLGDLRKVTYEE 128
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
+ DT G +F ++ I + A ++VY T +SF++ + ++I +R +
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-------KD 106
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL--ECSAKDNYNIKEVFR 342
+ IA LV + T L + K +EE ++ Q++ E SAK +NIK +F+
Sbjct: 107 VIIA------LVGNKTDLGDLR--KVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFK 156
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+++++G VGK+C+ RF + DR +T+ D R + IK AG
Sbjct: 31 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 90
Query: 69 --KSDMTSHHRAVHL-----EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
KS + ++R VH + + + LP + ++IP ++ GNK D+ S
Sbjct: 91 FRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 150
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 145 VDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
+ + DT G +F +M + HA + VY T SF S+ + EE + Q +IP
Sbjct: 80 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECK-QHLLANDIP 138
Query: 204 IVVAGNKSDMTS 215
++ GNK D+ S
Sbjct: 139 RILVGNKCDLRS 150
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 13/131 (9%)
Query: 225 VDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPA 283
+ + DT G +F +M + HA + VY T SF S+ + EE ++ P
Sbjct: 80 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPR 139
Query: 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+LV + L S V + L E SAK+ + V
Sbjct: 140 ------------ILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAI 187
Query: 344 FLTLSQILTTN 354
F TL+ L ++
Sbjct: 188 FXTLAHKLKSH 198
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Query: 141 KLRYVDI---------LDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 191
K++ VDI DT G +F + A +LVY T +F ++K +F+
Sbjct: 45 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT 104
Query: 192 IREQRQDFQEIPIVVAGNKSDM 213
+ E D E +++ GNKSDM
Sbjct: 105 VNEHAND--EAQLLLVGNKSDM 124
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDT 63
Query: 66 AGN---KSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSD 118
AG ++ T+++R + + DV++ K + + DE +++ GNKSD
Sbjct: 64 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 119 MTSHHRAVHLEDVSEWLYCEL 139
M + V D E L EL
Sbjct: 124 METR---VVTADQGEALAKEL 141
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 14/123 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
+ DT G +F + A +LVY T +F ++K +F+ + E D
Sbjct: 60 LWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND-------- 111
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
LLV + + +E+ + V E + +E SAK++ N+ E+F T
Sbjct: 112 -----EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165
Query: 347 LSQ 349
L Q
Sbjct: 166 LIQ 168
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 216 HHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
H + + L+ I DT G ++ + A FLL+Y ESF +V+ + +I+
Sbjct: 67 HDKRIKLQ---IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTY 123
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQD--FQLLECSAK 332
D +A +++ C LE + V E+ R D F+ E SAK
Sbjct: 124 SWD--------------NAQVILVGNKCDLEDERVVPA--EDGRRLADDLGFEFFEASAK 167
Query: 333 DNYNIKEVF 341
+N N+K+VF
Sbjct: 168 ENINVKQVF 176
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ + A FLL+Y ESF +V+ + +I+ D +++
Sbjct: 75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVIL 132
Query: 207 AGNKSDMTSHHRAVHLEDVDIL-DTCGDLQFPAMRRLSIATAHAFLLVYSTTC 258
GNK D+ R V ED L D G F A + +I F + C
Sbjct: 133 VGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVIC 184
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
+ A+L+VYS T SF+ ++R RQ ++IPI++ GNKSD+
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR-------- 128
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF----QSVKCYFEEIREQ---R 276
R +S++ A +V+ +E+ +VK FE I Q R
Sbjct: 129 ---------------XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173
Query: 277 QDFQFPAMRRLS 288
+D + RRL+
Sbjct: 174 RDSKEKNERRLA 185
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 12 RLVILGGQGVGKSCILKRF--LFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R+V++G QGVGKS + F + ++ ED Y R V + I + + NK
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 70 SDMTS-HHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
+ H + + D +Y + +LR ++ + ++IPI++ GNKSD+
Sbjct: 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 34/109 (31%)
Query: 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM-----------RRLSIATA 292
+ A+L+VYS T SF+ ++R RQ P + R +S++
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEG 137
Query: 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
A +V+ D + +E SA +N+KE+F
Sbjct: 138 RAXAVVF-----------------------DXKFIETSAAVQHNVKELF 163
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 147 ILDTCG-DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI- 204
+LDT G DL + + +A +LV+ + +ESF+S K +FE ++ R D +E P+
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYA-ILVFDVSSMESFESCKAWFELLKSARPD-RERPLR 134
Query: 205 -VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQF 236
V+ NK+D+ V L+ T L F
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDF 167
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 227 ILDTCG-DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+LDT G DL + + +A +LV+ + +ESF+S K +FE ++ R D + P +R
Sbjct: 77 LLDTAGSDLYKEQISQYWNGVYYA-ILVFDVSSMESFESCKAWFELLKSARPDRERP-LR 134
Query: 286 RLSIA 290
+ +A
Sbjct: 135 AVLVA 139
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 296 LLVYSTTCLESFQSVKCYFEEIREQRQD 323
+LV+ + +ESF+S K +FE ++ R D
Sbjct: 101 ILVFDVSSMESFESCKAWFELLKSARPD 128
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ ++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q IP
Sbjct: 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IP 113
Query: 204 IVVAGNKSDM 213
I++ GNK D+
Sbjct: 114 IMLVGNKKDL 123
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+T + + HL+ ++DT G ++ + + ++LVYS T ++SF+ +K ++
Sbjct: 47 ITVNGQEYHLQ---LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ Q P M + H ++ S++ K E + LE SAK
Sbjct: 104 LDMVGKVQIPIMLVGNKKDLHMERVI-------SYEEGKALAE-----SWNAAFLESSAK 151
Query: 333 DNYNIKEVFRTFL 345
+N +VFR +
Sbjct: 152 ENQTAVDVFRRII 164
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR 49
M ++ ++ ILG + VGKS + +F+ + D Y T+E+ +++
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTK 45
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 212 DMTSHHRAVHLEDVDIL--DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF 269
D V+ EDV ++ DT G +F A+ + A A +LV+STT ESF+++ +
Sbjct: 41 DFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWR 100
Query: 270 EEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329
E++ + D + A + + +C+++ ++ E +R +
Sbjct: 101 EKVVAEVGD--------IPTALVQNKIDLLDDSCIKNEEA------EGLAKRLKLRFYRT 146
Query: 330 SAKDNYNIKEVFR 342
S K++ N+ EVF+
Sbjct: 147 SVKEDLNVSEVFK 159
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F A+ + A A +LV+STT ESF+++ + E++ + D IP +
Sbjct: 58 LWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTAL 114
Query: 207 AGNKSDM 213
NK D+
Sbjct: 115 VQNKIDL 121
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ ++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q IP
Sbjct: 50 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IP 108
Query: 204 IVVAGNKSDM 213
I++ GNK D+
Sbjct: 109 IMLVGNKKDL 118
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+T + + HL+ ++DT G ++ + + ++LVYS T ++SF+ +K ++
Sbjct: 42 ITVNGQEYHLQ---LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 98
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ Q P M + H ++ S++ K E + LE SAK
Sbjct: 99 LDMVGKVQIPIMLVGNKKDLHMERVI-------SYEEGKALAES-----WNAAFLESSAK 146
Query: 333 DNYNIKEVFRTFL 345
+N +VFR +
Sbjct: 147 ENQTAVDVFRRII 159
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR 49
++ ILG + VGKS + +F+ + D Y T+E+ +++
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTK 40
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ ++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q IP
Sbjct: 53 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IP 111
Query: 204 IVVAGNKSDM 213
I++ GNK D+
Sbjct: 112 IMLVGNKKDL 121
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+T + + HL+ ++DT G ++ + + ++LVYS T ++SF+ +K ++
Sbjct: 45 ITVNGQEYHLQ---LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 101
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ Q P M + H ++ S++ K E + LE SAK
Sbjct: 102 LDMVGKVQIPIMLVGNKKDLHMERVI-------SYEEGKALAES-----WNAAFLESSAK 149
Query: 333 DNYNIKEVFRTFL 345
+N +VFR +
Sbjct: 150 ENQTAVDVFRRII 162
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ ++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q IP
Sbjct: 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-IP 113
Query: 204 IVVAGNKSDM 213
I++ GNK D+
Sbjct: 114 IMLVGNKKDL 123
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 213 MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
+T + + HL+ ++DT G ++ + + ++LVYS T ++SF+ +K ++
Sbjct: 47 ITVNGQEYHLQ---LVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKL 103
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ Q P M + H ++ S++ K E + LE SAK
Sbjct: 104 LDMVGKVQIPIMLVGNKKDLHMERVI-------SYEEGKALAES-----WNAAFLESSAK 151
Query: 333 DNYNIKEVFRTFL 345
+N +VFR +
Sbjct: 152 ENQTAVDVFRRII 164
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR 49
M ++ ++ ILG + VGKS + +F+ + D Y T+E+ +++
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTK 45
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A L+VY + S+++ + E+RE D + + +
Sbjct: 66 IWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGL 123
Query: 207 AGNKSDMTSHHRAVHLED 224
GNKSD+ +H RAV E+
Sbjct: 124 IGNKSDL-AHLRAVPTEE 140
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
++V++G GVGKS +L RF N ++ +ST+ + +R + IK AG
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 69 -KSDMTSHHRAV-------HLEDVSEWLYCE--LPKLRYVIQSSSFGDEIPIVVAGNKSD 118
++ ++++R + S + C L +LR + D + + + GNKSD
Sbjct: 75 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELR-----ENADDNVAVGLIGNKSD 129
Query: 119 MTSHHRAVHLED 130
+ +H RAV E+
Sbjct: 130 L-AHLRAVPTEE 140
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 9/143 (6%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M + ++L I G GVGKS ++ RFL + Y T+E Y + + +
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 65 VAGNKSDMT--SHHRA----VHLEDVSE-WLYCELPKLRYVIQSSSFGDEIPIVVAGNKS 117
AG + + H R V + D+++ + E+ L+ ++ + +++ GNK+
Sbjct: 83 TAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142
Query: 118 DMTSHHRAVHLEDVSEWLYCELP 140
D+ H R V E+ E L EL
Sbjct: 143 DL-DHSRQVSTEE-GEKLATELA 163
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ + + A ++VY T +SF ++K + +E++E + I + +
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAI 133
Query: 207 AGNKSDMTSHHRAVHLED 224
AGNK D+ S R V L+D
Sbjct: 134 AGNKCDL-SDIREVPLKD 150
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ + + A ++VY T +SF ++K + +E++E P
Sbjct: 76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-----PENIV 130
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFR 342
++IA L S + K Y E I ++E SAK+ NI+E+F+
Sbjct: 131 MAIAGNKCDL---SDIREVPLKDAKEYAESIGA-----IVVETSAKNAINIEELFQ 178
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+++++G VGK+C+ RF + DR +T+ D R + IK AG
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 81
Query: 69 --KSDMTSHHRAVH----LEDVSEWL-YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
KS + ++R VH + D++ + LP + ++IP ++ GNK D+ S
Sbjct: 82 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS 141
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 145 VDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
+ + DT G +F +M + HA + VY T + SF S+ + EE + Q +IP
Sbjct: 71 IQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK-QHLLANDIP 129
Query: 204 IVVAGNKSDMTS 215
++ GNK D+ S
Sbjct: 130 RILVGNKCDLRS 141
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 17/142 (11%)
Query: 218 RAVHLED----VDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 272
RAV ++ + + DT G +F +M + HA + VY T + SF S+ + EE
Sbjct: 60 RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC 119
Query: 273 REQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
++ P +LV + L S V + L E SAK
Sbjct: 120 KQHLLANDIPR------------ILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAK 167
Query: 333 DNYNIKEVFRTFLTLSQILTTN 354
+ + V F+TL+ L ++
Sbjct: 168 NPNDNDHVEAIFMTLAHKLKSH 189
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ + A F+L+Y T ESF +V+ + +I+ D +++
Sbjct: 76 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVIL 133
Query: 207 AGNKSDMTSHHRAVHLEDVDIL-DTCGDLQFPAMRRLSIATAHAFLLVYSTTC 258
GNK DM R V E +L + G F A + +I+ AF + C
Sbjct: 134 VGNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC 185
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 216 HHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275
H + V L+ I DT G ++ + A F+L+Y T ESF +V+ + +I+
Sbjct: 68 HEKRVKLQ---IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY 124
Query: 276 RQDFQFPAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
D +A +++ C +E + V ++ ++ F E SAK+N
Sbjct: 125 SWD--------------NAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170
Query: 335 YNIKEVF 341
++++ F
Sbjct: 171 ISVRQAF 177
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G F ++ R A LLVY T E+F + + E+ R+ + I
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVI 129
Query: 205 VVAGNKSDMTS 215
++ GNKSD+ S
Sbjct: 130 MLIGNKSDLES 140
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ I DT G F ++ R A LLVY T E+F + + E+ R+
Sbjct: 72 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-------- 123
Query: 285 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
++ +L+ + + LES + VK E + +E SAK N++E F
Sbjct: 124 -----SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 31/132 (23%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
+ A+L+VYS T SF+ ++R RQ ++IPI++ GNKSD+
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR-------- 128
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF----QSVKCYFEEIREQ---R 276
R +S++ A +V+ +E+ +VK FE I Q R
Sbjct: 129 ---------------XREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 173
Query: 277 QDFQFPAMRRLS 288
+D + RRL+
Sbjct: 174 RDSKEKNERRLA 185
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 12 RLVILGGQGVGKSCILKRF--LFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R+V++G QGVGKS + F + ++ ED Y R V + I + + NK
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 70 SDMTS-HHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
+ H + + D +Y + +LR ++ + ++IPI++ GNKSD+
Sbjct: 68 GENEWLHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAGN- 68
++++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + AG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 --KSDMTSHHRA----VHLEDVSEW-LYCELPKLR--YVIQSSSFGDE-IPIVVAGNKSD 118
+S + +R V + DV+ + L R ++IQ+S E P VV GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 119 MTSHHRAVHLEDVSEWLY 136
+ +R V + W Y
Sbjct: 129 L--ENRQVATKRAQAWCY 144
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD 198
+L + I DT G +F ++ A +LV+ T +F+++ + +E I+ +D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 199 FQEIPIVVAGNKSDMTSHHRAVH 221
+ P VV GNK D+ + A
Sbjct: 115 PENFPFVVLGNKIDLENRQVATK 137
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQEIPIVVAGNKSDMTSHHRAVHL 222
+ +A+A+L Y ++ C + ++R Q ++ I V +T + + L
Sbjct: 3 LGSAYAYLFKY-IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKL 61
Query: 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+ I DT G F ++ R A LLVY T ++F + + E+ R+
Sbjct: 62 Q---IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN----- 113
Query: 283 AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ +L+ + + LES + VK E + +E SAK N++E F
Sbjct: 114 --------SNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G F ++ R A LLVY T ++F + + E+ R+ + I
Sbjct: 61 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN--SNMVI 118
Query: 205 VVAGNKSDMTS 215
++ GNKSD+ S
Sbjct: 119 MLIGNKSDLES 129
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAGN- 68
++++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + AG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 --KSDMTSHHRA----VHLEDVSEW-LYCELPKLR--YVIQSSSFGDE-IPIVVAGNKSD 118
+S + +R V + DV+ + L R ++IQ+S E P VV GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 119 MTSHHRAVHLEDVSEWLYCE 138
+ +R V + W Y +
Sbjct: 129 L--ENRQVATKRAQAWCYSK 146
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD 198
+L + I DT G +F ++ A +LV+ T +F+++ + +E I+ +D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 199 FQEIPIVVAGNKSDMTSHHRAVH 221
+ P VV GNK D+ + A
Sbjct: 115 PENFPFVVLGNKIDLENRQVATK 137
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 6 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 66 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 122
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 114
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 115 LVGNKKDL 122
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V + E+ + +
Sbjct: 5 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 63
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 64 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 113
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 114 LVGNKKDL 121
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 66
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 67 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 123
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 115
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 116 LVGNKKDL 123
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + H ++VY T ESF +VK + EI Q+ ++ ++
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI---NQNCDDVCRIL 118
Query: 207 AGNKSDMTSHHRAVHLED 224
GNK+D + V ED
Sbjct: 119 VGNKND-DPERKVVETED 135
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+L+I+G GVGKS +L RF NT+S Y +T+ D R + +K AG
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 70
Query: 69 -KSDMTSHHRAVH----LEDV-SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSH 122
++ ++++R H + DV S + + + + I + D++ ++ GNK+D
Sbjct: 71 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKND-DPE 127
Query: 123 HRAVHLED 130
+ V ED
Sbjct: 128 RKVVETED 135
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 32/124 (25%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF------- 279
I DT G +F + H ++VY T ESF +VK + EI + D
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGN 121
Query: 280 --QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNI 337
P + + A+ F + QL E SAK+N N+
Sbjct: 122 KNDDPERKVVETEDAYKF-----------------------AGQMGIQLFETSAKENVNV 158
Query: 338 KEVF 341
+E+F
Sbjct: 159 EEMF 162
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI 58
++++ILG GVGK+ ++ R++ + YS +Y++T+ DF VT+
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI----GADFLTKEVTV 52
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD 198
K+ + + DT G +F ++ A +LVY T SF+++K + +E +
Sbjct: 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115
Query: 199 FQEIPIVVAGNKSDMTSHHRAVHLEDV-DILDTCGDL 234
+ P V+ GNK D + V + ++ + GD+
Sbjct: 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDI 152
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 6 RKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 65
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 66 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 122
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 114
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 115 LVGNKKDL 122
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
+ T AFL+V+S T SF V +R R ++P+++ GNKSD+ + R V LE
Sbjct: 83 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDL-ARSREVSLE 140
Query: 224 D 224
+
Sbjct: 141 E 141
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F ++ R A LLVY T E++ ++ + + R Q I I
Sbjct: 62 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVI 119
Query: 205 VVAGNKSDMTSHHRAVHLE 223
++ GNK D+ + LE
Sbjct: 120 ILCGNKKDLDADREVTFLE 138
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+ +++G G GKSC+L +F+ + D T+ + S+ +VG +K AG
Sbjct: 13 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 72
Query: 69 -KSDMTSHHR----AVHLEDV-SEWLYCELPKLRYVIQSSSFGDE-IPIVVAGNKSDMTS 121
+S S++R A+ + D+ S Y L ++ + + I I++ GNK D+ +
Sbjct: 73 FRSVTRSYYRGAAGALLVYDITSRETYNALTN--WLTDARMLASQNIVIILCGNKKDLDA 130
Query: 122 HHRAVHLE 129
LE
Sbjct: 131 DREVTFLE 138
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
+ T AFL+V+S T SF V +R R ++P+++ GNKSD+ + R V LE
Sbjct: 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDL-ARSREVSLE 151
Query: 224 D 224
+
Sbjct: 152 E 152
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V + E+ + +
Sbjct: 8 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 66
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 67 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 124
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 60 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 116
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 117 LVGNKKDL 124
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LV++G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 84
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++V + F +PI++ NK D+
Sbjct: 85 D--YDRLRPLSYPDTDVILMCFSVDSPDSLENIPE-KWVPEVKHFCPNVPIILVANKKDL 141
Query: 120 TSHH 123
S
Sbjct: 142 RSDE 145
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS L+ +S +S +++ + + E + +PI++
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKW--VPEVKHFCPNVPIIL 134
Query: 207 AGNKSDMTSHH 217
NK D+ S
Sbjct: 135 VANKKDLRSDE 145
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 14/130 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + Y TV + Y D V ++ AG +
Sbjct: 5 RKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 65 D--YDRARPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Query: 120 -TSHHRAVHL 128
H A L
Sbjct: 122 RNDEHTAREL 131
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F ++ R A LLVY T E++ ++ + + R Q I I
Sbjct: 61 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVI 118
Query: 205 VVAGNKSDMTSHHRAVHLE 223
++ GNK D+ + LE
Sbjct: 119 ILCGNKKDLDADREVTFLE 137
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+ +++G G GKSC+L +F+ + D T+ + S+ +VG +K AG
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 69 -KSDMTSHHR----AVHLEDV-SEWLYCELPKLRYVIQSSSFGDE-IPIVVAGNKSDMTS 121
+S S++R A+ + D+ S Y L ++ + + I I++ GNK D+ +
Sbjct: 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTN--WLTDARMLASQNIVIILCGNKKDLDA 129
Query: 122 HHRAVHLE 129
LE
Sbjct: 130 DREVTFLE 137
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V + E+ + +
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 65
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 66 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 123
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 115
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 116 LVGNKKDL 123
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 9 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 68
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 69 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 125
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 61 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 117
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 118 LVGNKKDL 125
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 85 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFXPNVPIILVGNKKDL 141
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS L+ +S +S +++ + E + +PI++
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW--TPEVKHFXPNVPIIL 134
Query: 207 AGNKSDM 213
GNK D+
Sbjct: 135 VGNKKDL 141
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + A +LVY T +F ++K +F+ + E D E +++
Sbjct: 56 IWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLL 113
Query: 207 AGNKSD 212
GNKSD
Sbjct: 114 VGNKSD 119
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + A +LVY T +F ++K +F+ + E D
Sbjct: 56 IWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAND-------- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
A LL+ + V E + +E SAK++ N+ E+F T
Sbjct: 108 ------EAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
Query: 347 LSQ 349
L Q
Sbjct: 162 LIQ 164
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV---A 66
+++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + + A
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDTA 60
Query: 67 GN---KSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
G ++ T+++R + + D+++ K + + DE +++ GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 120 TSHHRAVHLEDVSEWLYCEL 139
+ V D E L EL
Sbjct: 121 ETR---VVTADQGEALAKEL 137
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
+++Q +FQE I A + + V E I DT G ++ ++ + A A +
Sbjct: 33 VKDQFVEFQESTIGAAFFSQTLAVNDATVKFE---IWDTAGQERYHSLAPMYYRGAAAAI 89
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
+V+ T SF+ K + +E++ Q P M +++A + LL E Q+
Sbjct: 90 IVFDVTNQASFERAKKWVQELQAQGN----PNM-VMALAGNKSDLLDARKVTAEDAQTYA 144
Query: 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
Q +E SAK N+KE+F
Sbjct: 145 --------QENGLFFMETSAKTATNVKEIF 166
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G ++ ++ + A A ++V+ T SF+ K + +E+ Q Q + +
Sbjct: 64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMA 121
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+AGNKSD+ R V ED
Sbjct: 122 LAGNKSDLL-DARKVTAEDA 140
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 11/129 (8%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAGNK- 69
+LV+LG G GKS ++ RF+ + + + ST+ +S+ V T+K AG +
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 --SDMTSHHR----AVHLEDVSEWLYCELPKLRYVIQSSSFGD-EIPIVVAGNKSDMTSH 122
S ++R A+ + DV+ E K ++V + + G+ + + +AGNKSD+
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAK-KWVQELQAQGNPNMVMALAGNKSDLL-D 131
Query: 123 HRAVHLEDV 131
R V ED
Sbjct: 132 ARKVTAEDA 140
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223
+ T AFL+V+S T SF V +R R ++P+++ GNKSD+ + R V LE
Sbjct: 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDL-ARSREVSLE 130
Query: 224 D 224
+
Sbjct: 131 E 131
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAGN- 68
++++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + AG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 69 --KSDMTSHHRA----VHLEDVSEW-LYCELPKLR--YVIQSSSFGDE-IPIVVAGNKSD 118
+S + +R V + DV+ + L R ++IQ+S E P VV GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 119 MTSHHRAVHLEDVSEWLY 136
+R V + W Y
Sbjct: 129 F--ENRQVATKRAQAWCY 144
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD 198
+L + I DT G +F ++ A +LV+ T +F+++ + +E I+ +D
Sbjct: 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 199 FQEIPIVVAGNKSDMTSHHRAVH 221
+ P VV GNK D + A
Sbjct: 115 PENFPFVVLGNKIDFENRQVATK 137
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE-I 202
++ ++DT DL P + AHAFL+VYS +SF S Y E + ++ Q I
Sbjct: 70 HLRVMDTA-DLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSI 128
Query: 203 PIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF 262
P ++ GNK DM + + E V + G L F + CL+ F
Sbjct: 129 PALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV-----------------SACLD-F 170
Query: 263 QSVKCYFEE-IREQRQD 278
+ V+ F E +RE R++
Sbjct: 171 EHVQHVFHEAVREARRE 187
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRD 50
+ L ILG +G GKS + +FL + Y +ED YS +
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE 61
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 211 SDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 270
S+ T H+ VHL ++DT DL P + AHAFL+VYS +SF S Y E
Sbjct: 60 SEETVDHQPVHLR---VMDTA-DLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLE 115
Query: 271 EIREQRQDFQ--FPAM---------------RRLSIATAHAF--LLVYSTTCLESFQSVK 311
+ ++ Q PA+ + +A A F L + CL+ F+ V+
Sbjct: 116 LLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD-FEHVQ 174
Query: 312 CYFEE-IREQRQD 323
F E +RE R++
Sbjct: 175 HVFHEAVREARRE 187
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL++ T +SF +V+ + ++ Q + E P
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL--QMHAYSENP 128
Query: 204 -IVVAGNKSDMTSHHRAVHLEDV 225
IV+ GNKSD+ RAV E+
Sbjct: 129 DIVLCGNKSDL-EDQRAVKEEEA 150
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 198 DFQEIPIVVAGNKSD-MTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYST 256
DF+E +V N D + +HL+ + DT G +F ++ A FLL++
Sbjct: 47 DFREKRVVYRANGPDGAVGRGQRIHLQ---LWDTAGLERFRSLTTAFFRDAMGFLLLFDL 103
Query: 257 TCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 316
T +SF +V+ + +++ + + +L + + LE ++VK EE
Sbjct: 104 TNEQSFLNVRNWISQLQMH------------AYSENPDIVLCGNKSDLEDQRAVKE--EE 149
Query: 317 IREQRQDFQL--LECSAKDNYNIKEVFRTFLTL 347
RE + + + E SA + NI L L
Sbjct: 150 ARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ + A F+L+Y T ESF +V+ + +I+ D
Sbjct: 58 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD-------- 109
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKDNYNIKEVF 341
+A +L+ C + + E Q D F+ E SAKDN N+K+ F
Sbjct: 110 ------NAQVLLVGNKC--DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ + A F+L+Y T ESF +V+ + +I+ D ++ +V
Sbjct: 58 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV- 116
Query: 207 AGNKSDM-----TSHHRAVHLED 224
GNK DM S R L D
Sbjct: 117 -GNKCDMEDERVVSSERGRQLAD 138
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V + E+ + +
Sbjct: 7 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 65
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 66 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 123
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 115
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 116 LVGNKKDL 123
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L F + + + Y TV + Y D V ++ AG +
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 85 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 141
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 133
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 134 LVGNKKDL 141
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 141 KLRYVDI---------LDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 191
K++ VDI DT G +F + A +LVY T +F ++K +F+
Sbjct: 41 KIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKT 100
Query: 192 IREQRQDFQEIPIVVAGNKSD 212
+ E D E +++ GNKSD
Sbjct: 101 VNEHAND--EAQLLLVGNKSD 119
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 14/123 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
+ DT G +F + A +LVY T +F ++K +F+ + E D
Sbjct: 56 LWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAND-------- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346
A LL+ + V E + +E SAK++ N+ E+F T
Sbjct: 108 ------EAQLLLVGNKSDXETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161
Query: 347 LSQ 349
L Q
Sbjct: 162 LIQ 164
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV---A 66
+++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + + A
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDTA 60
Query: 67 GN---KSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
G ++ T+++R + + DV++ K + + DE +++ GNKSD
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDX 120
Query: 120 TSHHRAVHLEDVSEWLYCEL 139
+ V D E L EL
Sbjct: 121 ETR---VVTADQGEALAKEL 137
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213
A+L+VYS T SF+ ++R RQ ++IPI++ GNKSD+
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDL 157
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 8 NERIRLVILGGQGVGKSCILKRF--LFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV 65
N R+V++G QGVGKS + F + ++ ED Y R V + I + +
Sbjct: 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 94
Query: 66 AGNKSDMTS-HHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNK 116
NK + H + + D +Y + +LR ++ + ++IPI++ GNK
Sbjct: 95 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154
Query: 117 SDM 119
SD+
Sbjct: 155 SDL 157
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 22/104 (21%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A+L+VYS T SF+ ++R RQ P +LV + + L
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP------------IILVGNKSDL-- 157
Query: 307 FQSVKCYFEEIREQRQ-----DFQLLECSAKDNYNIKEVFRTFL 345
V+C + E R D + +E SA +N+KE+F +
Sbjct: 158 ---VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 198
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M + I+ V +G VGK+C+L + NT+ Y TV D +S + V T+
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 65 VAG----NKSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNK 116
AG N+ S+ A + +S+ Y + K +++ + + +PIV+ G K
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSK-KWIPELKHYAPGVPIVLVGTK 121
Query: 117 SDM 119
D+
Sbjct: 122 LDL 124
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS A F+L +S S+++V + I E + +PI
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKW--IPELKHYAPGVPI 115
Query: 205 VVAGNKSDM 213
V+ G K D+
Sbjct: 116 VLVGTKLDL 124
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
+P V +++ + V+L + DT G + +R LS A F+L +S S
Sbjct: 38 VPTVFDNFSANVVVNGATVNL---GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS 94
Query: 262 FQSV-KCYFEEIREQRQDFQFPAM-RRLSIATAHAFLLVY-STTCLESFQSVKCYFEEIR 318
+++V K + E++ + +L + F + + + + Q EE++
Sbjct: 95 YENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQG-----EELK 149
Query: 319 EQRQDFQLLECSAKDNYNIKEVF 341
+ +ECS+K N+K VF
Sbjct: 150 KLIGAPAYIECSSKSQENVKGVF 172
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213
+ A+L+VYS T SF+ ++R RQ ++IPI++ GNKSD+
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDL 126
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 8 NERIRLVILGGQGVGKSCILKRF--LFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV 65
N R+V++G QGVGKS + F + ++ ED Y R V + I + +
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 63
Query: 66 AGNKSDMTS-HHRAVHLEDVSEWLYC--------ELPKLRYVIQSSSFGDEIPIVVAGNK 116
NK + H + + D +Y + +LR ++ + ++IPI++ GNK
Sbjct: 64 WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 117 SDM 119
SD+
Sbjct: 124 SDL 126
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303
+ A+L+VYS T SF+ ++R RQ P +LV + +
Sbjct: 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP------------IILVGNKSD 125
Query: 304 LESFQSVKCYFEEIREQRQ-----DFQLLECSAKDNYNIKEVFRTFL 345
L V+C + E R D + +E SA +N+KE+F +
Sbjct: 126 L-----VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIV 167
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+I DT G +F ++ A A L+VY T +SF + + +E+ EQ ++I I
Sbjct: 55 EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIA 112
Query: 206 VAGNKSD 212
+ GNK D
Sbjct: 113 LVGNKID 119
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 280
H +I DT G +F ++ A A L+VY T +SF + + +E+ EQ
Sbjct: 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQ----- 104
Query: 281 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL--ECSAKDNYNIK 338
A + + IA L+ L+ K EE + ++ LL E SAK N+
Sbjct: 105 --ASKDIIIA-----LVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157
Query: 339 EVF 341
+VF
Sbjct: 158 DVF 160
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
I+LV+LG VGKS I+ RF+ N +++ T+
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI 36
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIVVAG-- 67
++++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + AG
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 68 -NKSDMTSHHRA----VHLEDVSEW-LYCELPKLR--YVIQSSSFGDE-IPIVVAGNKSD 118
+S + +R V + DV+ + L R ++IQ+S E P VV GNK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 119 MTSHHRAVHLEDVSEWLY 136
+ +R V + W Y
Sbjct: 129 L--ENRQVATKRAQAWCY 144
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD 198
+L + I DT G +F ++ A +LV+ T +F+++ + +E I+ +D
Sbjct: 55 RLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114
Query: 199 FQEIPIVVAGNKSDMTSHHRAVH 221
+ P VV GNK D+ + A
Sbjct: 115 PENFPFVVLGNKIDLENRQVATK 137
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 12/115 (10%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ +A +LVY T E+F + + + I +
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID------------K 126
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVF 341
+ A L+ C + + E+ +Q + E SAKDN+N+ E+F
Sbjct: 127 YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV---- 65
+++++I+G +GVGK+ +++RF +T+ + +STV DF + V ++ I +
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV----GVDFKIKTVELRGKKIRLQIWD 81
Query: 66 -AGNK---SDMTSHHRA----VHLEDVSEW-LYCELPKLRYVIQSSSFGDEIPIVVAGNK 116
AG + S ++++R+ + + D+++ + +LPK +I + ++ +++ GNK
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNK 140
Query: 117 SD------MTSHHRAVHLEDVSEWLYCE 138
D +T + ++ +CE
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCE 168
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ +A +LVY T E+F + + + I + + E+ +V
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLV- 137
Query: 207 AGNKSD 212
GNK D
Sbjct: 138 -GNKLD 142
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFP 282
++ + DT G + +R LS A FLL +S S++++ K + E++
Sbjct: 55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV 114
Query: 283 AM-RRLSIATAHAFLLVY-STTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340
+ +L + FL + + + Q EE+R+ + LECS+K N+K V
Sbjct: 115 LVGTKLDLRDDKQFLKDHPGAASITTAQG-----EELRKMIGAVRYLECSSKTQQNVKAV 169
Query: 341 FRTFLTLS 348
F T + ++
Sbjct: 170 FDTAIRVA 177
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG--- 67
I+ V +G VGK+C+L + NT+ Y TV D +S + V T+ AG
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 68 -NKSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
N+ S+ A + +S+ Y + K +++ + + IPIV+ G K D+
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHK-KWLPELKHYAPGIPIVLVGTKLDL 122
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIP 203
+ + DT G + +R LS A FLL +S S++++ K + E++ IP
Sbjct: 56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPG---IP 112
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 113 IVLVGTKLDL 122
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F ++ R A LLVY T E++ ++ + + R Q I I
Sbjct: 59 LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVI 116
Query: 205 VVAGNKSDMTSHHRAVHLE 223
++ GNK D+ + LE
Sbjct: 117 ILCGNKKDLDADREVTFLE 135
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
+ +++G G GKSC+L +F+ + D T+ + S+ +VG +K AG
Sbjct: 10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLER 69
Query: 68 NKSDMTSHHR----AVHLEDV-SEWLYCELPKLRYVIQSSSFGDE-IPIVVAGNKSDMTS 121
+S S++R A+ + D+ S Y L ++ + + I I++ GNK D+ +
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNALTN--WLTDARMLASQNIVIILCGNKKDLDA 127
Query: 122 HHRAVHLE 129
LE
Sbjct: 128 DREVTFLE 135
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F ++ R A LLVY T E++ S+ + + R I +
Sbjct: 76 LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVV 133
Query: 205 VVAGNKSDMTSHHRAVHLE 223
++ GNK D+ LE
Sbjct: 134 ILCGNKKDLDPEREVTFLE 152
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN-- 68
+ +++G G GKSC+L +F+ N + T+ + SR +VG T+K AG
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 69 -KSDMTSHHR----AVHLEDV-SEWLYCELPKLRYVIQSSSFGD-EIPIVVAGNKSDMTS 121
+S S++R A+ + D+ S Y L ++ + + I +++ GNK D+
Sbjct: 87 FRSVTRSYYRGAAGALLVYDITSRETYNSLAA--WLTDARTLASPNIVVILCGNKKDLDP 144
Query: 122 HHRAVHLE 129
LE
Sbjct: 145 EREVTFLE 152
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N +S Y TV D YS + V
Sbjct: 11 GQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV 56
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 63 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 119
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 120 IILVGTKLDL 129
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 43 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 99
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 100 FENVRAKWYPEVR 112
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL++ T +SF +V+ + ++ Q + E P
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL--QANAYCENP 142
Query: 204 -IVVAGNKSDMTSHHRAVHLEDVDILDTCG 232
IV+ GNK+D+ + ++ D G
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYG 172
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 198 DFQEIPIVVAGNKSDMTSHHR-AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYST 256
DF+E +V + +S VHL+ + DT G +F ++ A FLL++
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQ---LWDTAGQERFRSLTTAFFRDAMGFLLMFDL 117
Query: 257 TCLESFQSVKCYFEEIR 273
T +SF +V+ + +++
Sbjct: 118 TSQQSFLNVRNWMSQLQ 134
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ A+ A L+VY + S+++ + E+RE D + + +
Sbjct: 63 IWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADD--NVAVGL 120
Query: 207 AGNKSDMTSHHRAV 220
GNKSD+ +H RAV
Sbjct: 121 IGNKSDL-AHLRAV 133
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 19/128 (14%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGKS +L RF + ++ +ST+ + +R V IK AG
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLER 71
Query: 68 NKSDMTSHHR----AVHLEDVSEWLYCE-----LPKLRYVIQSSSFGDEIPIVVAGNKSD 118
++ ++++R A+ + D+S+ E L +LR + D + + + GNKSD
Sbjct: 72 YRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELR-----ENADDNVAVGLIGNKSD 126
Query: 119 MTSHHRAV 126
+ +H RAV
Sbjct: 127 L-AHLRAV 133
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F +R L FLL +S SFQ+V + + E R + PI++
Sbjct: 72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKW--VPEIRCHCPKAPIIL 129
Query: 207 AGNKSDMTSHHRAVHLEDVDI---LDTCGDLQFP 237
G +SD+ EDV + LD C + P
Sbjct: 130 VGTQSDLR--------EDVKVLIELDKCKEKPVP 155
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP + ++ R V L+ + DT G +F +R L FLL +S S
Sbjct: 50 IPTAFDNFSAVVSVDGRPVRLQ---LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS 106
Query: 262 FQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESF---QSVKCYFEEI 317
FQ+V + + EIR + S +L+ C E ++ K EEI
Sbjct: 107 FQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166
Query: 318 REQRQDFQLLECSAKDNYNIKEVF 341
+ +ECSA N+KEVF
Sbjct: 167 KAA----SYIECSALTQKNLKEVF 186
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV-GAVTIKEIPIVVAGNKS 70
R+V+LG GVGK+ + F D + ED+Y R V G T + K
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 71 DMTSHHRAVHLEDVSEWL----------YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMT 120
D + + L+ S ++ + +LR ++ + D +PI++ GNK+D+
Sbjct: 66 DKSWSQESC-LQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA 124
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214
A+++VYS SF+S ++R Q +PI++ GNK+D+
Sbjct: 78 GSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLA 124
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 12 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 58
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 65 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 122
Query: 207 AGNKSDM 213
G + D+
Sbjct: 123 VGTQIDL 129
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G ++ + A F+L Y T ESF +V+ + +I+ D
Sbjct: 61 IWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWD-------- 112
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKDNYNIKEVF 341
+A +L+ C + + E Q D F+ E SAKDN N+K+ F
Sbjct: 113 ------NAQVLLVGNKC--DXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G ++ + A F+L Y T ESF +V+ + +I+ D ++ +V
Sbjct: 61 IWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV- 119
Query: 207 AGNKSD-----MTSHHRAVHLED 224
GNK D + S R L D
Sbjct: 120 -GNKCDXEDERVVSSERGRQLAD 141
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGG 48
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
++ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 5 SQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 52
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SF++VK + + E + P
Sbjct: 57 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPF 114
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 115 LLVGTQIDL 123
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 3 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 49
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 56 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 113
Query: 207 AGNKSDM 213
G + D+
Sbjct: 114 VGTQIDL 120
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 50
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 114
Query: 207 AGNKSDM 213
G + D+
Sbjct: 115 VGTQIDL 121
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 4 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 50
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 57 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 114
Query: 207 AGNKSDM 213
G + D+
Sbjct: 115 VGTQIDL 121
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 51
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SF++VK + + E + P
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPF 113
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 114 LLVGTQIDL 122
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 6 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 52
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 9 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 55
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 62 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 119
Query: 207 AGNKSDM 213
G + D+
Sbjct: 120 VGTQIDL 126
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS L+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 48
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS L+ +S SF++V+ ++ E+R P
Sbjct: 55 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH---CPNTP 111
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 112 IILVGTKLDL 121
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 5 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 51
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SF++VK + + E + P
Sbjct: 56 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPF 113
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 114 LLVGTQIDL 122
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S S+++V+ +F E+R P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH---CPSTP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDSKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
+++V+ +F E+R
Sbjct: 90 YENVRAKWFPEVR 102
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 6 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 50
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS L+ +S SF++V+ ++ E+R P
Sbjct: 57 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH---CPNTP 113
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 114 IILVGTKLDL 123
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS L+ +S SF++V+ ++ E+R P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH---CPNTP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
E I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 198
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G + +R LS FL+ +S SF V+ ++ E+R PI+
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH---CPNTPII 263
Query: 206 VAGNKSDM 213
+ G K D+
Sbjct: 264 LVGTKLDL 271
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
E I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 198
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G + +R LS FL+ +S SF V+ ++ E+R PI+
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH---CPNTPII 263
Query: 206 VAGNKSDM 213
+ G K D+
Sbjct: 264 LVGTKLDL 271
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 5 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 49
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 56 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 112
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 113 IILVGTKLDL 122
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 IILVGTKLDL 119
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 21 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 65
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 72 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 128
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 129 IILVGTKLDL 138
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 52 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 108
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 109 FENVRAKWYPEVR 121
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
E I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 198
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G + +R LS FL+ +S SF V+ ++ E+R PI+
Sbjct: 207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH---CPNTPII 263
Query: 206 VAGNKSDM 213
+ G K D+
Sbjct: 264 LVGTKLDL 271
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 48
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 73
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 136
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 137 IILVGTKLDL 146
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 60 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 116
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 117 FENVRAKWYPEVR 129
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M + I+ V +G VGK+C+L + NT+ Y TV D +S + V T+
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 65 VAG----NKSDMTSHHRA----VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNK 116
AG N+ S+ A + +S+ Y + K +++ + + +PI++ G K
Sbjct: 61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAK-KWIPELRHYAPGVPIILVGTK 119
Query: 117 SDM 119
D+
Sbjct: 120 LDL 122
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS A F+L +S S+++V + I E R +PI++
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKW--IPELRHYAPGVPIIL 115
Query: 207 AGNKSDM 213
G K D+
Sbjct: 116 VGTKLDL 122
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y TV D Y+ +G
Sbjct: 9 QTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG 55
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SF++VK + + E + P
Sbjct: 60 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPF 117
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 118 LLVGTQIDL 126
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 73
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 136
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 137 IILVGTKLDL 146
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V ++ AG +
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 64
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 65 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 113
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 114 LVGNKKDL 121
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 2 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 46
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R P
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH---CPHTP 109
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 110 ILLVGTKLDL 119
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 33 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 89
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 90 FENVRAKWYPEVR 102
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V ++ AG +
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQE 62
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 63 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 119
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 55 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 111
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 112 LVGNKKDL 119
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
++ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 7 SQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 52
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S S+++V+ +F E+R P
Sbjct: 59 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH---CPSTP 115
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 116 IILVGTKLDL 125
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 39 IPTVFDNYSANVMVDSKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 95
Query: 262 FQSVKC-YFEEIR 273
+++V+ +F E+R
Sbjct: 96 YENVRAKWFPEVR 108
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V + E+ + +
Sbjct: 3 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 61
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 62 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 119
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 55 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 111
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 112 LVGNKKDL 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 9 QAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV 53
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 116
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 117 IILVGTKLDL 126
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 40 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 96
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 97 FENVRAKWYPEVR 109
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 47
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R P
Sbjct: 54 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH---CPHTP 110
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 111 ILLVGTKLDL 120
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 34 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 90
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 91 FENVRAKWYPEVR 103
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V + E+ + +
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 63
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 64 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 113
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 114 LVGNKKDL 121
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V + E+ + +
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQV-ELALWDTAGQ 63
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 64 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 113
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 114 LVGNKKDL 121
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 3 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 47
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R P
Sbjct: 54 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH---CPHTP 110
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 111 ILLVGTKLDL 120
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 34 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 90
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 91 FENVRAKWYPEVR 103
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V + E+ + +
Sbjct: 5 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQV-ELALWDTAGQ 63
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 64 EDY-DRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 121
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIV 205
+ DT G + +R LS L+ +S +S +++ E+ + + F +PI+
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIP---EKWTPEVKHFCPNVPII 113
Query: 206 VAGNKSDM 213
+ GNK D+
Sbjct: 114 LVGNKKDL 121
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N + Y TV D YS + V
Sbjct: 9 QAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 53
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S S+++V+ +F E+R P
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH---CPSTP 116
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 117 IILVGTKLDL 126
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 40 IPTVFDNYSANVMVDSKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 96
Query: 262 FQSVKC-YFEEIR 273
+++V+ +F E+R
Sbjct: 97 YENVRAKWFPEVR 109
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N Y TV D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F + + +A+ +L Y T SF SV + E++R + I
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR--KYAGSNIVQ 137
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL 228
++ GNKSD+ S R V L + L
Sbjct: 138 LLIGNKSDL-SELREVSLAEAQSL 160
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+LV++G VGK+C+++RF +S+R ST+
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 36/129 (27%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE---------- 274
+ I DT G +F + + +A+ +L Y T SF SV + E++R+
Sbjct: 80 LQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLL 139
Query: 275 --QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
+ D +R +S+A A + Y C +E SAK
Sbjct: 140 IGNKSDLS--ELREVSLAEAQSLAEHYDILC----------------------AIETSAK 175
Query: 333 DNYNIKEVF 341
D+ N++E F
Sbjct: 176 DSSNVEEAF 184
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 136
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 137 IILVGTKLDL 146
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHV 53
+ I+ V++G VGK+C+L + N Y TV D YS + V
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMV 73
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
IP V +++ + V+L + DT G + +R LS FL+ +S S
Sbjct: 60 IPTVFDNYSANVMVDGKPVNL---GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS 116
Query: 262 FQSVKC-YFEEIR 273
F++V+ ++ E+R
Sbjct: 117 FENVRAKWYPEVR 129
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I D G M I A LLVY T +SF++++ ++ +++ ++ + P+
Sbjct: 58 LQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL 117
Query: 205 V-VAGNKSDMTSHHRAVHLE 223
V + GNK D+ H R + E
Sbjct: 118 VALVGNKIDL-EHMRTIKPE 136
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
+ I+ V++G VGK+C+L + N + Y V D Y+ +G
Sbjct: 2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGG 48
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G + +R LS FL+ +S SF++VK + + E + P ++
Sbjct: 55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW--VPEITHHCPKTPFLL 112
Query: 207 AGNKSDM 213
G + D+
Sbjct: 113 VGTQIDL 119
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL++ T +SF +V+ + ++ Q + E P
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL--QANAYCENP 128
Query: 204 -IVVAGNKSDMTSHH 217
IV+ GNK+D+
Sbjct: 129 DIVLIGNKADLPDQR 143
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 198 DFQEIPIVVAGNKSDMTSHHR-AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYST 256
DF+E +V +D S VHL+ + DT G +F ++ A FLL++
Sbjct: 47 DFREKRVVYDTQGADGASGKAFKVHLQ---LWDTAGLERFRSLTTAFFRDAMGFLLMFDL 103
Query: 257 TCLESFQSVKCYFEEIR 273
T +SF +V+ + +++
Sbjct: 104 TSQQSFLNVRNWMSQLQ 120
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL++ T +SF +V+ + ++ Q + E P
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL--QANAYCENP 128
Query: 204 -IVVAGNKSDMTSHH 217
IV+ GNK+D+
Sbjct: 129 DIVLIGNKADLPDQR 143
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 198 DFQEIPIVVAGNKSDMTSHHR-AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYST 256
DF+E +V +D S VHL+ + DT G +F ++ A FLL++
Sbjct: 47 DFREKRVVYDTQGADGASGKAFKVHLQ---LWDTAGLERFRSLTTAFFRDAMGFLLMFDL 103
Query: 257 TCLESFQSVKCYFEEIR 273
T +SF +V+ + +++
Sbjct: 104 TSQQSFLNVRNWMSQLQ 120
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGA 55
++ V++G VGK+C+L + + + + Y TV D Y+ VG
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGG 63
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SFQ+VK E + E ++ +P
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVK--EEWVPELKEYAPNVPF 125
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 126 LLIGTQIDL 134
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQF 281
+ + DT G + +R LS FL+ +S SFQ+VK + E++E + F
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF 125
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGK+ +L RF N +S R+T+ + +R +G +K AG
Sbjct: 12 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 71
Query: 68 NKSDMTSHHRAVHLEDVSEWLYCELPKLR-YVIQSSSFGD-------EIPIVVAGNKSDM 119
++ ++++R V L +L K + Y + + I +++ GNKSD+
Sbjct: 72 YRAITSAYYRGA----VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 127
Query: 120 TSHHRAVHLED 130
S R V E+
Sbjct: 128 -SQAREVPTEE 137
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 17/131 (12%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG--- 67
++V++G GVGK+ +L RF N +S R+T+ + +R +G +K AG
Sbjct: 27 KVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86
Query: 68 NKSDMTSHHRAVHLEDVSEWLYCELPKLR-YVIQSSSFGD-------EIPIVVAGNKSDM 119
++ ++++R V L +L K + Y + + I +++ GNKSD+
Sbjct: 87 YRAITSAYYRGA----VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDL 142
Query: 120 TSHHRAVHLED 130
S R V E+
Sbjct: 143 -SQAREVPTEE 152
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN- 68
++++LG GVGKS ++ R++ N + + T+ + ++D V + AG
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 69 --KSDMTSHHRAV-------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVA 113
+S T +R +++S W E V + SF P V+
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK-EFIYYADVKEPESF----PFVIL 126
Query: 114 GNKSDMTSHHRAVHLEDVSEW 134
GNK+D+ R V E+ W
Sbjct: 127 GNKTDI--KERQVSTEEAQAW 145
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK------CYFEEIREQRQDFQ 200
I DT G +F ++R + LL +S +SFQ++ Y+ +++E +
Sbjct: 64 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP----E 119
Query: 201 EIPIVVAGNKSDMTSHHRAVHLEDV 225
P V+ GNK+D+ R V E+
Sbjct: 120 SFPFVILGNKTDI--KERQVSTEEA 142
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 21/127 (16%)
Query: 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK------CYFEEIRE 274
H + I DT G +F ++R + LL +S +SFQ++ Y+ +++E
Sbjct: 58 HFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 117
Query: 275 QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
FP F+++ + T ++ Q + + D+ E SAKD+
Sbjct: 118 PE---SFP------------FVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDS 162
Query: 335 YNIKEVF 341
N+ F
Sbjct: 163 TNVAAAF 169
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 135 LYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 194
Y ++++ D+ DT G +F +R A ++++ T ++++V + R+
Sbjct: 47 FYTNFGEIKF-DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWH---RD 102
Query: 195 QRQDFQEIPIVVAGNKSDMT---------SHHRAVHLEDVDI 227
+ + IPIV+ GNK D+ + HR +L+ DI
Sbjct: 103 LVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDI 144
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+LV++G G GK+ +KR L + +Y +T+
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 38
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 135 LYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 194
Y ++++ D+ DT G +F +R A ++++ T ++++V + R+
Sbjct: 46 FYTNFGEIKF-DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWH---RD 101
Query: 195 QRQDFQEIPIVVAGNKSDMT---------SHHRAVHLEDVDI 227
+ + IPIV+ GNK D+ + HR +L+ DI
Sbjct: 102 LVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDI 143
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+LV++G G GK+ +KR L + +Y +T+
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 37
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + + Y TV + Y D V ++ AG +
Sbjct: 8 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLE 67
Query: 70 SDMTSHHRAVHLEDVSEWLYC----------ELPKLRYVIQSSSFGDEIPIVVAGNKSDM 119
R + D L C +P+ ++ + F +PI++ GNK D+
Sbjct: 68 D--YDRLRPLSYPDTDVILMCFSIDSPDSLENIPE-KWTPEVKHFCPNVPIILVGNKKDL 124
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL + T +SF +V+ + ++ Q + E P
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL--QANAYCENP 128
Query: 204 -IVVAGNKSDMTSHH 217
IV+ GNK+D+
Sbjct: 129 DIVLIGNKADLPDQR 143
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP 203
++ + DT G +F ++ A FLL + T +SF +V+ + ++ Q + E P
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQL--QANAYCENP 128
Query: 204 -IVVAGNKSDMTSHH 217
IV+ GNK+D+
Sbjct: 129 DIVLIGNKADLPDQR 143
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
+++V++G G GK+ +L F + + Y TV + Y + V + AG
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ-- 92
Query: 71 DMTSHHRAVHLEDVSEWLYC---ELPKL------RYVIQSSSFGDEIPIVVAGNKSDM 119
D R + D S L C P R+ + + F ++PI+V G K+D+
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 141 KLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 199
K ++ I DT G + +R L A LL + T SF ++ F + F
Sbjct: 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI---FNRWYPEVNHFC 136
Query: 200 QEIPIVVAGNKSDM 213
+++PI+V G K+D+
Sbjct: 137 KKVPIIVVGCKTDL 150
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 34/146 (23%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN- 68
+++++LG GVGKS ++ R++ N + + T+ + +RD V + AG
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 69 --KSDMTSHHRAVH-------------LEDVSEW-----LYCELPKLRYVIQSSSFGDEI 108
KS T +R E++ W Y ++ +
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEH----------F 117
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEW 134
P VV GNK D R V E+ W
Sbjct: 118 PFVVLGNKVD--KEDRQVTTEEAQTW 141
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI--REQRQDFQEIPI 204
I DT G +F ++R A LL +S +SF+++ + +E +D + P
Sbjct: 60 IWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPF 119
Query: 205 VVAGNKSD 212
VV GNK D
Sbjct: 120 VVLGNKVD 127
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + A +LVY T +SF +++ + I E ++ ++
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMI 118
Query: 207 AGNKSDMTSHHR 218
GNK D+ +
Sbjct: 119 LGNKCDVNDKRQ 130
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+L+++G GVGK+C+L RF + ++ + ST+
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI 41
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 42/145 (28%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + A +LVY T +SF +++ + I E
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----------- 109
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-------------DFQLLECSAKD 333
A+A ++ C ++ ++RQ + +E SAK
Sbjct: 110 ---ASADVEKMILGNKC------------DVNDKRQVSKERGEKLALDYGIKFMETSAKA 154
Query: 334 NYNIKEVFRTFLTLSQILTTNGDEN 358
N N++ F TL++ + D+N
Sbjct: 155 NINVENA---FFTLARDIKAKMDKN 176
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F A+ R A L+VY T ++ + + + R I
Sbjct: 66 LQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVI 123
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ GNK+D+ + + E + G L A + AFL
Sbjct: 124 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 12 RLVILGGQGVGKSCILKRF 30
+ +I+G GVGKSC+L +F
Sbjct: 17 KYIIIGDMGVGKSCLLHQF 35
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ I DT G +F A+ R A L+VY T ++ + + + R I
Sbjct: 81 LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVI 138
Query: 205 VVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251
++ GNK+D+ + + E + G L A + AFL
Sbjct: 139 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 185
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 12 RLVILGGQGVGKSCILKRF 30
+ +I+G GVGKSC+L +F
Sbjct: 32 KYIIIGDMGVGKSCLLHQF 50
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN- 68
++++LG GVGKS ++ R++ N + + T+ + ++D V + AG
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 69 --KSDMTSHHRAV-------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVA 113
+S T +R +++S W E V + SF P V+
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK-EFIYYADVKEPESF----PFVIL 122
Query: 114 GNKSDMTSHHRAVHLEDVSEW 134
GNK D++ R V E+ W
Sbjct: 123 GNKIDIS--ERQVSTEEAQAW 141
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK------CYFEEIREQRQDFQ 200
I DT G +F ++R + LL +S +SFQ++ Y+ +++E +
Sbjct: 60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP----E 115
Query: 201 EIPIVVAGNKSDMTSHHRAVHLEDV 225
P V+ GNK D++ R V E+
Sbjct: 116 SFPFVILGNKIDIS--ERQVSTEEA 138
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F + A +LVY T +SF +++ + I E ++ ++
Sbjct: 59 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMI 116
Query: 207 AGNKSDMTSHHR 218
GNK D+ +
Sbjct: 117 LGNKCDVNDKRQ 128
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+L+++G GVGK+C+L RF + ++ + ST+
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI 39
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 15/119 (12%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F + A +LVY T +SF +++ + I E
Sbjct: 59 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH----------- 107
Query: 287 LSIATAHAFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344
A+A ++ C + + V E + +E SAK N N++ F T
Sbjct: 108 ---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL 163
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 24/141 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN- 68
++++LG GVGKS ++ R++ N + + T+ + ++D V + AG
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 69 --KSDMTSHHRAV-------------HLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVA 113
+S T +R +++S W E V + SF P V+
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK-EFIYYADVKEPESF----PFVIL 124
Query: 114 GNKSDMTSHHRAVHLEDVSEW 134
GNK D++ R V E+ W
Sbjct: 125 GNKIDIS--ERQVSTEEAQAW 143
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK------CYFEEIREQRQDFQ 200
I DT G +F ++R + LL +S +SFQ++ Y+ +++E +
Sbjct: 62 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEP----E 117
Query: 201 EIPIVVAGNKSDMTSHHRAVHLEDV 225
P V+ GNK D++ R V E+
Sbjct: 118 SFPFVILGNKIDIS--ERQVSTEEA 140
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 135 LYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 194
Y ++++ D+ DT G +F +R A ++++ T ++++V + R+
Sbjct: 54 FYTNFGEIKF-DVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWH---RD 109
Query: 195 QRQDFQEIPIVVAGNKSDMT---------SHHRAVHLEDVDI 227
+ + IPIV+ GNK D+ + HR +L+ DI
Sbjct: 110 LVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDI 151
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+LV++G G GK+ +KR L + +Y +T+
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATI 45
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
++++I+G GVGKS +L RF +T+ +T+ DF V ++ V GNK+
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATI----GVDFKVKTIS-------VDGNKA 64
Query: 71 DM 72
+
Sbjct: 65 KL 66
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 198 DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT 257
DF+ I V GNK+ + I DT G +F + A +LVY T
Sbjct: 51 DFKVKTISVDGNKAKLA------------IWDTAGQERFRTLTPSYYRGAQGVILVYDVT 98
Query: 258 CLESFQSVKCYFEEI----------------REQRQDFQFPAMRRLSIATAHAFLLVYST 301
++F + + E+ + +++ + L A H+ L + ++
Sbjct: 99 RRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKENREVDRNEGLKFARKHSXLFIEAS 158
Query: 302 --TCLESFQSVKCYFEEIREQ 320
TC V+C FEE+ E+
Sbjct: 159 AKTC----DGVQCAFEELVEK 175
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 18/148 (12%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK AG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 KS--------DMTSHHRAVHLEDVSEWLYCELPKL-RYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + + + S Y +P R +++ + IPIV+ GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDI 126
Query: 120 TSHHRAVHLEDVSEWLYCELPKLRYVDI 147
R V + + ++ L+Y DI
Sbjct: 127 KD--RKVKAKSI---VFHRKKNLQYYDI 149
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK N
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKF-------N 62
Query: 69 KSDMTSHHRAVHLED---------------VSEWLYCELPKL-RYVIQSSSFGDEIPIVV 112
D + LED S Y +P R +++ + IPIV+
Sbjct: 63 VWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVL 119
Query: 113 AGNKSDM 119
GNK D+
Sbjct: 120 CGNKVDI 126
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 18/148 (12%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV++G G GK+ +KR L + +Y T+ +++ FH IK AG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 KS--------DMTSHHRAVHLEDVSEWLYCELPKL-RYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + + + S Y +P R +++ + IPIV+ GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDI 126
Query: 120 TSHHRAVHLEDVSEWLYCELPKLRYVDI 147
R V + + ++ L+Y DI
Sbjct: 127 KD--RKVKAKSI---VFHRKKNLQYYDI 149
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 111
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 112 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 142
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK AG
Sbjct: 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69 KS--------DMTSHHRAVHLEDVSEWLYCELPKL-RYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + + + S Y +P R +++ + IPIV+ GNK D+
Sbjct: 63 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDI 119
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGN 68
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK AG
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69 KS--------DMTSHHRAVHLEDVSEWLYCELPKL-RYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + + + S Y +P R +++ + IPIV+ GNK D+
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDI 126
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y T+ +++ FH IK
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 123
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 154
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 65
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 123
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 154
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNK 69
R +LVI+G GK+C+L + + Y TV + Y D V + E+ + +
Sbjct: 10 RRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRV-ELALWDTAGQ 68
Query: 70 SDMTSHHRAVHLEDVSEWLYC---ELP------KLRYVIQSSSFGDEIPIVVAGNKSDMT 120
D R + D + L C +LP + +++ + F +PI++ G K D+
Sbjct: 69 EDY-DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLR 127
Query: 121 SHHRAVH 127
+ + +
Sbjct: 128 NDPQTIE 134
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G ++ +R A ++++ T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 12/91 (13%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++ DT G +F +R A ++ + T ++++V + R+ + + IPIV
Sbjct: 62 NVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWH---RDLVRVCENIPIV 118
Query: 206 VAGNKSDMTSH---------HRAVHLEDVDI 227
+ GNK D+ HR +L+ DI
Sbjct: 119 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI 149
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
>pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic
Nucleotide Phosphodiesterases
Length = 353
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 51 FHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL--PKL 95
FH+ + ++ +++ + +H AVH DV++ ++C L PKL
Sbjct: 58 FHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL 104
>pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6-
Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One
Length = 318
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 51 FHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL--PKL 95
FH+ + ++ +++ + +H AVH DV++ ++C L PKL
Sbjct: 49 FHLDMMKLRRFLVMIQEDYHSQNPYHNAVHAADVTQAMHCYLKEPKL 95
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK 59
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK
Sbjct: 12 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAG- 67
+ +LV++G G GK+ +KR L + +Y +T+ +++ FH IK AG
Sbjct: 6 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 68 -------NKSDMTSHHRAVHLEDVSEWLYCELPKL-RYVIQSSSFGDEIPIVVAGNKSDM 119
+ + + + + S Y +P R +++ + IPIV+ GNK D+
Sbjct: 66 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDI 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,931,689
Number of Sequences: 62578
Number of extensions: 429202
Number of successful extensions: 2863
Number of sequences better than 100.0: 283
Number of HSP's better than 100.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1471
Number of HSP's gapped (non-prelim): 1013
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)