Query psy16673
Match_columns 373
No_of_seqs 215 out of 2131
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 19:04:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.9E-38 4.1E-43 268.2 15.7 167 8-352 7-175 (205)
2 KOG0092|consensus 100.0 9.8E-38 2.1E-42 262.9 15.8 163 8-348 3-166 (200)
3 KOG0078|consensus 100.0 3.3E-36 7.2E-41 258.4 17.5 165 7-349 9-174 (207)
4 KOG0394|consensus 100.0 2.3E-36 5E-41 252.0 14.0 173 7-353 6-182 (210)
5 KOG0094|consensus 100.0 7.4E-36 1.6E-40 251.4 16.7 164 8-348 20-184 (221)
6 KOG0098|consensus 100.0 1E-35 2.3E-40 248.5 16.1 166 5-348 1-167 (216)
7 KOG0080|consensus 100.0 1.1E-34 2.3E-39 236.4 14.2 164 8-348 9-173 (209)
8 KOG0079|consensus 100.0 8.1E-35 1.8E-39 233.8 11.2 164 10-352 8-172 (198)
9 KOG0091|consensus 100.0 4.4E-34 9.5E-39 233.4 14.4 170 9-354 7-178 (213)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.3E-34 2E-38 247.9 17.4 174 7-347 2-178 (182)
11 KOG0087|consensus 100.0 4.7E-34 1E-38 243.9 13.8 162 9-348 13-175 (222)
12 cd04121 Rab40 Rab40 subfamily. 100.0 6.8E-33 1.5E-37 243.7 20.0 175 9-362 5-180 (189)
13 cd04133 Rop_like Rop subfamily 100.0 4.9E-33 1.1E-37 242.0 17.0 170 11-349 2-173 (176)
14 cd04131 Rnd Rnd subfamily. Th 100.0 4.7E-33 1E-37 242.8 16.3 171 10-347 1-174 (178)
15 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.3E-32 4.9E-37 246.9 19.2 173 9-348 12-187 (232)
16 KOG0088|consensus 100.0 3.2E-33 7E-38 227.1 10.0 162 8-347 11-173 (218)
17 cd04120 Rab12 Rab12 subfamily. 100.0 9.4E-32 2E-36 238.7 18.4 160 11-348 1-162 (202)
18 cd01875 RhoG RhoG subfamily. 100.0 9.4E-32 2E-36 237.3 18.2 172 10-348 3-176 (191)
19 KOG0093|consensus 100.0 4.2E-32 9E-37 218.0 13.4 161 9-347 20-181 (193)
20 cd01874 Cdc42 Cdc42 subfamily. 100.0 8.8E-32 1.9E-36 234.2 16.6 172 10-348 1-174 (175)
21 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.2E-31 6.9E-36 238.2 19.9 173 10-349 1-176 (222)
22 KOG0095|consensus 100.0 7.7E-32 1.7E-36 217.0 13.7 168 9-354 6-175 (213)
23 KOG0086|consensus 100.0 1.4E-31 3E-36 216.4 14.4 161 9-347 8-169 (214)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.1E-31 1.7E-35 227.5 18.6 162 10-348 2-163 (172)
25 KOG0393|consensus 100.0 2E-31 4.4E-36 229.9 11.5 178 9-353 3-183 (198)
26 COG1160 Predicted GTPases [Gen 100.0 1.5E-30 3.2E-35 247.5 17.8 301 11-367 4-369 (444)
27 cd01871 Rac1_like Rac1-like su 100.0 1.9E-30 4.1E-35 225.6 16.8 170 11-347 2-173 (174)
28 cd04117 Rab15 Rab15 subfamily. 100.0 3.5E-30 7.7E-35 220.9 17.8 159 11-347 1-160 (161)
29 KOG0083|consensus 100.0 6.9E-32 1.5E-36 213.4 6.2 159 14-350 1-161 (192)
30 cd04122 Rab14 Rab14 subfamily. 100.0 6.6E-30 1.4E-34 220.1 18.3 161 10-348 2-163 (166)
31 PTZ00369 Ras-like protein; Pro 100.0 1.1E-29 2.3E-34 223.8 18.9 164 8-348 3-166 (189)
32 KOG0395|consensus 100.0 4.3E-30 9.4E-35 226.2 16.2 167 9-352 2-168 (196)
33 cd04136 Rap_like Rap-like subf 100.0 9.8E-30 2.1E-34 217.7 18.0 119 11-215 2-120 (163)
34 KOG0081|consensus 100.0 4.2E-31 9.1E-36 214.9 8.9 173 10-350 9-182 (219)
35 PF00071 Ras: Ras family; Int 100.0 1.7E-29 3.7E-34 216.3 18.9 159 12-348 1-160 (162)
36 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-29 3.6E-34 222.8 19.1 167 12-354 1-168 (190)
37 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.9E-29 4.1E-34 220.9 18.2 164 11-348 1-165 (182)
38 cd01873 RhoBTB RhoBTB subfamil 100.0 8.6E-30 1.9E-34 225.2 16.1 126 145-347 68-194 (195)
39 KOG0097|consensus 100.0 8.3E-30 1.8E-34 203.6 14.0 163 8-348 9-172 (215)
40 cd04134 Rho3 Rho3 subfamily. 100.0 1.6E-29 3.6E-34 222.6 17.3 171 12-349 2-174 (189)
41 cd04140 ARHI_like ARHI subfami 100.0 2.6E-29 5.7E-34 216.3 18.2 161 11-347 2-163 (165)
42 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-29 5E-34 223.8 18.2 164 11-350 1-169 (201)
43 cd04175 Rap1 Rap1 subgroup. T 100.0 3E-29 6.6E-34 215.4 18.3 120 10-215 1-120 (164)
44 cd04109 Rab28 Rab28 subfamily. 100.0 4.5E-29 9.7E-34 224.3 18.8 163 11-349 1-166 (215)
45 cd04127 Rab27A Rab27a subfamil 100.0 4.1E-29 9E-34 217.8 18.0 173 9-348 3-176 (180)
46 PLN03071 GTP-binding nuclear p 100.0 3.3E-29 7.2E-34 225.6 17.9 121 7-215 10-131 (219)
47 cd04176 Rap2 Rap2 subgroup. T 100.0 4.2E-29 9.2E-34 214.2 17.7 120 10-215 1-120 (163)
48 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 6.4E-29 1.4E-33 215.2 18.4 165 12-351 2-167 (170)
49 cd01867 Rab8_Rab10_Rab13_like 100.0 9.9E-29 2.1E-33 213.1 18.5 162 9-348 2-164 (167)
50 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.1E-28 2.4E-33 210.5 18.5 120 10-215 1-120 (162)
51 cd04103 Centaurin_gamma Centau 100.0 6.8E-29 1.5E-33 212.4 17.1 156 11-347 1-157 (158)
52 cd01865 Rab3 Rab3 subfamily. 100.0 1.3E-28 2.7E-33 212.0 18.2 159 11-347 2-161 (165)
53 cd04132 Rho4_like Rho4-like su 100.0 1.1E-28 2.3E-33 216.8 18.1 169 11-354 1-172 (187)
54 cd04126 Rab20 Rab20 subfamily. 100.0 9.7E-29 2.1E-33 221.9 17.9 175 11-349 1-190 (220)
55 cd04119 RJL RJL (RabJ-Like) su 100.0 1.7E-28 3.7E-33 210.7 18.1 162 11-348 1-166 (168)
56 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.5E-28 5.3E-33 209.3 18.7 121 9-215 1-121 (164)
57 smart00173 RAS Ras subfamily o 100.0 2.3E-28 5E-33 209.7 18.4 161 11-348 1-161 (164)
58 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.4E-28 5.2E-33 210.2 18.4 161 10-348 2-163 (166)
59 cd04110 Rab35 Rab35 subfamily. 100.0 2.7E-28 5.9E-33 216.6 19.2 162 9-349 5-167 (199)
60 cd04111 Rab39 Rab39 subfamily. 100.0 2.6E-28 5.6E-33 218.7 18.9 163 10-349 2-166 (211)
61 cd04112 Rab26 Rab26 subfamily. 100.0 3.4E-28 7.5E-33 214.5 18.9 181 11-370 1-183 (191)
62 smart00174 RHO Rho (Ras homolo 100.0 1.9E-28 4.2E-33 212.4 16.7 169 13-348 1-171 (174)
63 cd04106 Rab23_lke Rab23-like s 100.0 3.5E-28 7.7E-33 208.0 17.5 157 11-346 1-160 (162)
64 cd04124 RabL2 RabL2 subfamily. 100.0 5.4E-28 1.2E-32 207.3 18.2 116 11-214 1-117 (161)
65 smart00176 RAN Ran (Ras-relate 100.0 2.7E-28 5.9E-33 216.2 16.6 111 16-214 1-112 (200)
66 cd04116 Rab9 Rab9 subfamily. 100.0 5.9E-28 1.3E-32 208.6 18.2 123 7-214 2-127 (170)
67 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.2E-28 4.8E-33 212.2 15.4 169 11-346 1-171 (173)
68 cd04125 RabA_like RabA-like su 100.0 6.6E-28 1.4E-32 212.1 18.6 161 11-349 1-162 (188)
69 cd00877 Ran Ran (Ras-related n 100.0 5.6E-28 1.2E-32 208.4 17.6 116 11-214 1-117 (166)
70 cd04115 Rab33B_Rab33A Rab33B/R 100.0 6.6E-28 1.4E-32 208.6 17.9 162 10-348 2-168 (170)
71 cd04143 Rhes_like Rhes_like su 100.0 6.5E-28 1.4E-32 220.6 18.4 119 11-214 1-126 (247)
72 cd01868 Rab11_like Rab11-like. 100.0 1.1E-27 2.3E-32 205.9 18.4 119 10-215 3-122 (165)
73 PLN03108 Rab family protein; P 100.0 1.8E-27 4E-32 213.0 20.2 163 8-348 4-167 (210)
74 PLN03110 Rab GTPase; Provision 100.0 1.5E-27 3.2E-32 214.5 19.6 163 9-349 11-174 (216)
75 PRK03003 GTP-binding protein D 100.0 1.6E-27 3.4E-32 237.8 21.1 195 145-362 88-395 (472)
76 cd04142 RRP22 RRP22 subfamily. 100.0 1.5E-27 3.2E-32 211.6 17.9 120 11-215 1-130 (198)
77 cd04135 Tc10 TC10 subfamily. 100.0 7.3E-28 1.6E-32 208.7 15.6 171 11-348 1-173 (174)
78 cd01866 Rab2 Rab2 subfamily. 100.0 3.1E-27 6.7E-32 204.0 18.4 161 10-348 4-165 (168)
79 cd04113 Rab4 Rab4 subfamily. 100.0 2.5E-27 5.5E-32 202.7 17.7 159 11-347 1-160 (161)
80 cd04177 RSR1 RSR1 subgroup. R 100.0 3.7E-27 8E-32 203.4 18.4 119 11-215 2-120 (168)
81 cd04118 Rab24 Rab24 subfamily. 100.0 3.9E-27 8.4E-32 207.9 18.5 164 11-349 1-166 (193)
82 cd01864 Rab19 Rab19 subfamily. 100.0 4E-27 8.6E-32 202.5 18.1 120 9-215 2-122 (165)
83 cd04146 RERG_RasL11_like RERG/ 100.0 3.1E-27 6.6E-32 203.2 16.8 161 12-348 1-163 (165)
84 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.6E-27 1.2E-31 201.1 17.6 117 11-215 1-121 (164)
85 cd04148 RGK RGK subfamily. Th 99.9 7E-27 1.5E-31 210.8 18.5 164 11-353 1-167 (221)
86 cd01870 RhoA_like RhoA-like su 99.9 6.3E-27 1.4E-31 203.0 16.2 172 10-348 1-174 (175)
87 cd04129 Rho2 Rho2 subfamily. 99.9 1E-26 2.3E-31 204.4 17.4 176 10-354 1-178 (187)
88 cd01892 Miro2 Miro2 subfamily. 99.9 8.7E-27 1.9E-31 201.6 15.1 119 8-215 2-122 (169)
89 cd01861 Rab6 Rab6 subfamily. 99.9 4.9E-26 1.1E-30 194.5 17.8 117 11-214 1-118 (161)
90 PLN03118 Rab family protein; P 99.9 9.2E-26 2E-30 202.2 20.2 165 8-350 12-178 (211)
91 cd01860 Rab5_related Rab5-rela 99.9 6.3E-26 1.4E-30 194.2 18.1 119 10-215 1-120 (163)
92 smart00175 RAB Rab subfamily o 99.9 8.5E-26 1.8E-30 193.4 18.0 118 11-215 1-119 (164)
93 cd04139 RalA_RalB RalA/RalB su 99.9 1.1E-25 2.3E-30 192.6 18.2 119 11-215 1-119 (164)
94 cd01863 Rab18 Rab18 subfamily. 99.9 1.9E-25 4.1E-30 191.0 17.6 118 11-214 1-119 (161)
95 TIGR03594 GTPase_EngA ribosome 99.9 3.1E-25 6.7E-30 219.6 20.7 194 145-361 49-356 (429)
96 cd01862 Rab7 Rab7 subfamily. 99.9 3.2E-25 7E-30 191.4 17.7 120 11-215 1-123 (172)
97 cd04123 Rab21 Rab21 subfamily. 99.9 4.2E-25 9.2E-30 188.4 17.9 118 11-215 1-119 (162)
98 cd04114 Rab30 Rab30 subfamily. 99.9 6.4E-25 1.4E-29 189.2 18.9 121 8-215 5-126 (169)
99 cd04147 Ras_dva Ras-dva subfam 99.9 3.3E-25 7.2E-30 196.6 17.3 118 12-215 1-118 (198)
100 cd00157 Rho Rho (Ras homology) 99.9 6.7E-25 1.4E-29 189.2 16.5 117 11-215 1-118 (171)
101 cd04137 RheB Rheb (Ras Homolog 99.9 2.2E-24 4.7E-29 188.1 19.2 119 11-215 2-120 (180)
102 cd04149 Arf6 Arf6 subfamily. 99.9 3.8E-25 8.2E-30 191.1 14.2 119 7-215 6-124 (168)
103 PTZ00132 GTP-binding nuclear p 99.9 2.5E-24 5.5E-29 193.4 19.1 124 4-215 3-127 (215)
104 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.4E-24 3.1E-29 190.1 16.8 120 9-215 2-123 (183)
105 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.6E-25 1E-29 189.8 13.4 112 13-215 2-113 (164)
106 cd04150 Arf1_5_like Arf1-Arf5- 99.9 6.5E-25 1.4E-29 187.9 14.1 115 11-215 1-115 (159)
107 PRK00093 GTP-binding protein D 99.9 2.9E-24 6.2E-29 213.0 20.7 191 145-360 51-355 (435)
108 cd01893 Miro1 Miro1 subfamily. 99.9 2E-24 4.3E-29 186.1 17.1 116 11-215 1-117 (166)
109 cd00876 Ras Ras family. The R 99.9 3.3E-24 7.1E-29 182.5 16.8 118 12-215 1-118 (160)
110 smart00177 ARF ARF-like small 99.9 1.8E-24 3.9E-29 188.2 14.8 118 8-215 11-128 (175)
111 cd04102 RabL3 RabL3 (Rab-like3 99.9 2.4E-24 5.2E-29 191.0 15.5 105 11-195 1-106 (202)
112 PLN00223 ADP-ribosylation fact 99.9 2.7E-24 5.8E-29 188.1 15.4 118 8-215 15-132 (181)
113 KOG4252|consensus 99.9 1.8E-25 3.9E-30 185.6 7.5 161 10-349 20-181 (246)
114 cd00154 Rab Rab family. Rab G 99.9 1E-23 2.3E-28 178.4 17.2 117 11-214 1-118 (159)
115 PTZ00133 ADP-ribosylation fact 99.9 3.8E-24 8.3E-29 187.3 14.9 118 8-215 15-132 (182)
116 cd04158 ARD1 ARD1 subfamily. 99.9 5.6E-24 1.2E-28 183.9 15.3 70 145-215 45-114 (169)
117 cd04154 Arl2 Arl2 subfamily. 99.9 1.2E-23 2.5E-28 182.5 15.8 70 145-215 60-129 (173)
118 PRK09518 bifunctional cytidyla 99.9 8.2E-23 1.8E-27 213.1 19.6 300 8-363 273-635 (712)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 4.3E-23 9.3E-28 179.2 14.5 118 8-215 13-130 (174)
120 cd04157 Arl6 Arl6 subfamily. 99.9 3.7E-23 7.9E-28 176.7 13.3 71 145-215 47-118 (162)
121 cd04156 ARLTS1 ARLTS1 subfamil 99.9 7.9E-23 1.7E-27 174.5 13.6 70 145-215 46-115 (160)
122 cd04151 Arl1 Arl1 subfamily. 99.9 1.7E-22 3.8E-27 172.4 13.5 70 145-215 45-114 (158)
123 PTZ00099 rab6; Provisional 99.9 5.7E-22 1.2E-26 172.4 14.4 111 145-348 31-141 (176)
124 cd00879 Sar1 Sar1 subfamily. 99.9 1.1E-21 2.3E-26 172.6 16.0 70 145-215 65-134 (190)
125 cd04161 Arl2l1_Arl13_like Arl2 99.9 4.6E-22 9.9E-27 171.6 13.2 70 145-215 45-114 (167)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.1E-21 2.3E-26 167.3 14.8 70 145-215 45-114 (158)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1E-21 2.2E-26 168.9 14.5 70 145-215 52-121 (167)
128 PLN00023 GTP-binding protein; 99.9 4.9E-22 1.1E-26 184.9 13.2 136 8-215 19-165 (334)
129 cd04159 Arl10_like Arl10-like 99.9 6E-21 1.3E-25 161.6 14.4 114 13-215 2-115 (159)
130 cd01890 LepA LepA subfamily. 99.8 2.3E-20 5.1E-25 162.3 15.8 67 143-215 67-133 (179)
131 COG1100 GTPase SAR1 and relate 99.8 2.7E-20 5.8E-25 167.4 16.5 119 10-215 5-125 (219)
132 smart00178 SAR Sar1p-like memb 99.8 8.4E-20 1.8E-24 160.1 16.1 70 145-215 63-132 (184)
133 cd01898 Obg Obg subfamily. Th 99.8 5.7E-20 1.2E-24 158.3 14.3 71 145-215 50-128 (170)
134 cd01897 NOG NOG1 is a nucleola 99.8 8.2E-20 1.8E-24 157.1 15.2 67 145-215 49-127 (168)
135 cd04155 Arl3 Arl3 subfamily. 99.8 1.1E-19 2.3E-24 157.2 15.9 70 145-215 60-129 (173)
136 KOG0096|consensus 99.8 1.5E-20 3.3E-25 158.1 9.6 120 8-215 8-128 (216)
137 TIGR02528 EutP ethanolamine ut 99.8 3E-20 6.5E-25 155.6 11.0 60 145-214 37-101 (142)
138 cd04171 SelB SelB subfamily. 99.8 1.9E-19 4.2E-24 153.7 14.7 63 145-215 53-118 (164)
139 TIGR00231 small_GTP small GTP- 99.8 4.2E-19 9.2E-24 149.5 16.3 119 10-215 1-122 (161)
140 KOG1673|consensus 99.8 5.8E-20 1.3E-24 149.5 9.9 168 6-347 16-184 (205)
141 PRK04213 GTP-binding protein; 99.8 2E-19 4.4E-24 159.6 12.3 36 6-41 5-40 (201)
142 cd01878 HflX HflX subfamily. 99.8 9.9E-19 2.1E-23 155.7 15.9 68 145-215 91-167 (204)
143 PRK12299 obgE GTPase CgtA; Rev 99.8 1.4E-18 3E-23 165.3 17.0 71 145-215 208-285 (335)
144 PF08477 Miro: Miro-like prote 99.8 7E-19 1.5E-23 142.7 11.7 68 145-212 52-119 (119)
145 PF00025 Arf: ADP-ribosylation 99.8 2.8E-18 6E-23 149.2 15.8 70 145-215 60-129 (175)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 7.2E-18 1.6E-22 144.8 16.4 65 145-215 52-116 (168)
147 TIGR02729 Obg_CgtA Obg family 99.8 7.9E-18 1.7E-22 160.0 16.0 71 145-215 207-287 (329)
148 cd01891 TypA_BipA TypA (tyrosi 99.8 1.5E-17 3.4E-22 146.9 16.1 65 145-215 67-131 (194)
149 TIGR03156 GTP_HflX GTP-binding 99.8 1.1E-17 2.5E-22 160.3 16.4 68 145-215 239-315 (351)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.8 8.1E-18 1.7E-22 165.8 15.7 64 145-215 253-324 (442)
151 cd01879 FeoB Ferrous iron tran 99.8 1.5E-17 3.2E-22 141.2 13.6 63 145-215 45-115 (158)
152 PRK12297 obgE GTPase CgtA; Rev 99.8 2.6E-17 5.6E-22 160.5 16.9 70 145-214 208-287 (424)
153 PRK15494 era GTPase Era; Provi 99.7 5.9E-17 1.3E-21 155.0 15.7 64 145-215 102-174 (339)
154 PRK05291 trmE tRNA modificatio 99.7 3.6E-17 7.7E-22 162.0 14.4 63 145-215 265-335 (449)
155 cd04105 SR_beta Signal recogni 99.7 9.4E-17 2E-21 142.9 15.7 71 145-215 50-123 (203)
156 TIGR00436 era GTP-binding prot 99.7 1.1E-16 2.3E-21 148.9 16.7 64 145-215 50-121 (270)
157 cd00882 Ras_like_GTPase Ras-li 99.7 1.1E-16 2.3E-21 133.3 14.6 70 145-215 47-116 (157)
158 cd01881 Obg_like The Obg-like 99.7 5.4E-17 1.2E-21 140.3 13.2 71 145-215 46-134 (176)
159 cd00881 GTP_translation_factor 99.7 2.4E-16 5.2E-21 137.7 16.9 65 145-215 64-128 (189)
160 KOG3883|consensus 99.7 2.1E-16 4.6E-21 128.5 15.0 162 10-347 9-173 (198)
161 PRK15467 ethanolamine utilizat 99.7 7.1E-17 1.5E-21 138.0 12.6 59 147-214 41-104 (158)
162 TIGR01393 lepA GTP-binding pro 99.7 1.6E-16 3.5E-21 161.9 17.0 67 143-215 70-136 (595)
163 cd01894 EngA1 EngA1 subfamily. 99.7 2E-16 4.3E-21 133.9 14.4 65 145-215 47-119 (157)
164 KOG0073|consensus 99.7 5.1E-16 1.1E-20 127.9 16.0 70 145-215 62-131 (185)
165 cd04164 trmE TrmE (MnmE, ThdF, 99.7 2.2E-16 4.7E-21 133.6 14.2 63 145-215 51-121 (157)
166 PRK11058 GTPase HflX; Provisio 99.7 2.5E-16 5.4E-21 154.4 16.1 69 145-215 247-323 (426)
167 CHL00189 infB translation init 99.7 4.2E-16 9.2E-21 160.5 17.2 62 145-215 297-361 (742)
168 PRK12296 obgE GTPase CgtA; Rev 99.7 5.1E-16 1.1E-20 153.3 16.7 33 322-354 313-345 (500)
169 cd01895 EngA2 EngA2 subfamily. 99.7 1E-15 2.2E-20 131.5 16.6 65 145-215 52-127 (174)
170 PRK00454 engB GTP-binding prot 99.7 6.3E-16 1.4E-20 136.4 15.7 37 7-43 21-57 (196)
171 TIGR00487 IF-2 translation ini 99.7 5.9E-16 1.3E-20 157.1 17.2 65 145-215 137-201 (587)
172 cd01889 SelB_euk SelB subfamil 99.7 5.5E-16 1.2E-20 136.7 14.9 66 144-215 69-134 (192)
173 PF02421 FeoB_N: Ferrous iron 99.7 8.8E-16 1.9E-20 129.6 14.4 30 315-344 127-156 (156)
174 KOG4423|consensus 99.7 6.4E-18 1.4E-22 141.8 1.3 102 8-193 23-125 (229)
175 cd01896 DRG The developmentall 99.7 3E-15 6.6E-20 135.9 18.3 50 295-351 179-228 (233)
176 PRK05306 infB translation init 99.7 2E-15 4.3E-20 156.9 17.6 62 145-215 339-403 (787)
177 TIGR03598 GTPase_YsxC ribosome 99.7 2.1E-15 4.5E-20 131.5 14.1 65 145-215 66-143 (179)
178 TIGR00475 selB selenocysteine- 99.6 3.7E-15 7.9E-20 151.9 16.2 62 145-215 52-117 (581)
179 KOG0070|consensus 99.6 2.5E-15 5.5E-20 127.0 11.0 120 6-215 13-132 (181)
180 PRK12298 obgE GTPase CgtA; Rev 99.6 1E-14 2.3E-19 141.5 16.3 71 145-215 209-289 (390)
181 cd04163 Era Era subfamily. Er 99.6 1.5E-14 3.3E-19 122.9 15.5 64 145-214 53-124 (168)
182 TIGR00437 feoB ferrous iron tr 99.6 3.9E-15 8.4E-20 151.9 13.7 34 315-348 121-154 (591)
183 TIGR00491 aIF-2 translation in 99.6 1.6E-14 3.4E-19 146.5 17.5 62 145-215 71-135 (590)
184 KOG1707|consensus 99.6 3.7E-15 8.1E-20 145.1 11.9 124 6-215 5-129 (625)
185 cd01888 eIF2_gamma eIF2-gamma 99.6 2.2E-14 4.8E-19 127.7 14.6 64 144-215 84-151 (203)
186 PRK05433 GTP-binding protein L 99.6 2.4E-14 5.1E-19 146.3 16.2 67 143-215 74-140 (600)
187 PRK00089 era GTPase Era; Revie 99.6 7.6E-14 1.7E-18 131.2 16.3 64 145-214 55-126 (292)
188 KOG0075|consensus 99.6 8.2E-15 1.8E-19 118.6 8.2 119 8-215 18-136 (186)
189 cd04168 TetM_like Tet(M)-like 99.6 5.5E-14 1.2E-18 127.9 14.6 66 144-215 65-130 (237)
190 COG0486 ThdF Predicted GTPase 99.6 4.6E-14 9.9E-19 135.6 14.0 114 8-215 215-338 (454)
191 cd00880 Era_like Era (E. coli 99.6 6.3E-14 1.4E-18 117.8 12.8 65 145-215 47-118 (163)
192 cd01876 YihA_EngB The YihA (En 99.5 1.5E-13 3.2E-18 117.2 14.5 32 12-43 1-32 (170)
193 PF00009 GTP_EFTU: Elongation 99.5 2.4E-13 5.3E-18 119.4 14.9 64 145-214 72-135 (188)
194 PRK12317 elongation factor 1-a 99.5 5.6E-14 1.2E-18 138.9 12.0 68 144-215 85-153 (425)
195 KOG0076|consensus 99.5 8.3E-14 1.8E-18 116.1 10.6 70 145-215 71-140 (197)
196 cd04167 Snu114p Snu114p subfam 99.5 2.2E-13 4.7E-18 122.2 13.3 66 143-214 71-136 (213)
197 PRK09554 feoB ferrous iron tra 99.5 2.7E-13 5.8E-18 141.7 15.4 34 315-348 134-167 (772)
198 PRK04004 translation initiatio 99.5 5.3E-13 1.2E-17 135.9 17.0 61 145-214 73-136 (586)
199 KOG0084|consensus 99.5 1.6E-14 3.5E-19 123.0 5.0 55 224-278 59-113 (205)
200 TIGR00483 EF-1_alpha translati 99.5 1.1E-13 2.5E-18 136.7 11.7 68 144-215 86-155 (426)
201 cd04166 CysN_ATPS CysN_ATPS su 99.5 3E-13 6.6E-18 120.8 12.5 66 145-215 79-144 (208)
202 KOG0071|consensus 99.5 5.2E-13 1.1E-17 107.3 12.3 70 145-215 63-132 (180)
203 TIGR03680 eif2g_arch translati 99.5 5.1E-13 1.1E-17 131.1 14.7 64 144-215 81-148 (406)
204 cd04165 GTPBP1_like GTPBP1-lik 99.5 1.2E-12 2.7E-17 118.0 15.1 66 144-215 85-152 (224)
205 cd04169 RF3 RF3 subfamily. Pe 99.5 1.4E-12 2.9E-17 120.8 15.1 66 144-215 72-137 (267)
206 PRK03003 GTP-binding protein D 99.5 3.6E-13 7.7E-18 134.8 12.0 65 145-215 261-336 (472)
207 PRK04000 translation initiatio 99.5 1.3E-12 2.8E-17 128.3 15.6 64 144-215 86-153 (411)
208 TIGR01394 TypA_BipA GTP-bindin 99.4 1.7E-12 3.7E-17 132.3 16.1 66 144-215 65-130 (594)
209 PRK10218 GTP-binding protein; 99.4 2.8E-12 6.2E-17 130.6 17.7 66 144-215 69-134 (607)
210 COG1159 Era GTPase [General fu 99.4 2.6E-12 5.7E-17 117.0 15.1 65 145-215 56-128 (298)
211 PRK10512 selenocysteinyl-tRNA- 99.4 4.8E-12 1E-16 129.6 16.1 62 145-215 53-118 (614)
212 cd04170 EF-G_bact Elongation f 99.4 1.5E-11 3.2E-16 114.2 16.7 65 145-215 66-130 (268)
213 PRK13351 elongation factor G; 99.4 8.8E-12 1.9E-16 130.4 14.4 66 144-215 74-139 (687)
214 cd04104 p47_IIGP_like p47 (47- 99.3 2.3E-11 5.1E-16 107.7 14.5 62 145-215 54-121 (197)
215 COG2229 Predicted GTPase [Gene 99.3 4E-11 8.7E-16 101.5 15.0 66 145-215 70-135 (187)
216 COG1163 DRG Predicted GTPase [ 99.3 3.4E-11 7.3E-16 110.4 15.6 51 295-352 242-292 (365)
217 KOG1423|consensus 99.3 7.7E-12 1.7E-16 113.5 11.3 66 145-215 122-199 (379)
218 cd01883 EF1_alpha Eukaryotic e 99.3 8.3E-12 1.8E-16 112.5 11.5 67 144-215 78-151 (219)
219 KOG0092|consensus 99.3 1.3E-12 2.7E-17 111.1 5.4 68 223-303 54-121 (200)
220 cd01885 EF2 EF2 (for archaea a 99.3 1.6E-11 3.5E-16 110.3 12.9 67 143-215 73-139 (222)
221 TIGR03594 GTPase_EngA ribosome 99.3 8.6E-12 1.9E-16 123.6 12.2 64 145-214 222-296 (429)
222 KOG0087|consensus 99.3 8.6E-13 1.9E-17 113.7 4.3 66 225-303 65-130 (222)
223 KOG0079|consensus 99.3 1.1E-12 2.5E-17 106.3 4.3 57 222-278 56-112 (198)
224 cd01886 EF-G Elongation factor 99.3 3.8E-11 8.3E-16 111.3 15.0 65 145-215 66-130 (270)
225 PRK00741 prfC peptide chain re 99.3 5E-11 1.1E-15 120.1 16.7 66 144-215 80-145 (526)
226 PRK09518 bifunctional cytidyla 99.3 1.2E-11 2.5E-16 129.7 11.9 65 145-215 500-575 (712)
227 cd01884 EF_Tu EF-Tu subfamily. 99.3 1.1E-10 2.4E-15 103.1 16.0 64 145-214 67-131 (195)
228 cd01899 Ygr210 Ygr210 subfamil 99.3 5.5E-11 1.2E-15 112.4 15.0 50 294-347 216-267 (318)
229 KOG0078|consensus 99.3 2.7E-12 5.8E-17 111.0 5.0 56 223-278 61-116 (207)
230 COG1160 Predicted GTPases [Gen 99.3 1.5E-11 3.2E-16 118.1 10.3 109 9-122 177-304 (444)
231 TIGR00503 prfC peptide chain r 99.3 1.6E-10 3.4E-15 116.5 18.2 66 144-215 81-146 (527)
232 TIGR00484 EF-G translation elo 99.3 1E-10 2.2E-15 122.3 16.5 65 145-215 77-141 (689)
233 cd01850 CDC_Septin CDC/Septin. 99.3 5.1E-11 1.1E-15 110.8 12.7 29 10-38 4-32 (276)
234 TIGR00485 EF-Tu translation el 99.3 9.4E-11 2E-15 114.8 14.6 65 145-215 77-142 (394)
235 KOG1489|consensus 99.2 9.5E-11 2.1E-15 107.1 13.0 71 145-215 246-326 (366)
236 KOG0074|consensus 99.2 4.1E-11 8.8E-16 96.6 9.1 72 143-215 62-133 (185)
237 TIGR00157 ribosome small subun 99.2 2.4E-11 5.3E-16 111.1 8.7 97 233-346 23-120 (245)
238 smart00010 small_GTPase Small 99.2 5E-12 1.1E-16 102.6 3.7 49 162-214 42-90 (124)
239 COG0370 FeoB Fe2+ transport sy 99.2 1.7E-10 3.7E-15 115.7 15.1 38 314-351 129-166 (653)
240 PRK12736 elongation factor Tu; 99.2 3.3E-10 7.2E-15 110.8 16.2 65 145-215 77-142 (394)
241 COG2262 HflX GTPases [General 99.2 3.4E-10 7.4E-15 107.3 15.4 69 145-215 242-318 (411)
242 KOG1191|consensus 99.2 1.3E-10 2.9E-15 111.8 12.6 48 10-62 268-317 (531)
243 PRK09602 translation-associate 99.2 3.1E-11 6.7E-16 117.4 8.5 50 293-346 218-268 (396)
244 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 9.5E-10 2E-14 99.1 17.4 71 145-215 50-125 (232)
245 KOG0098|consensus 99.2 1.5E-11 3.2E-16 103.9 5.1 54 225-278 57-110 (216)
246 PLN00023 GTP-binding protein; 99.2 2.8E-11 6E-16 113.2 7.3 89 224-324 84-189 (334)
247 COG0532 InfB Translation initi 99.2 4.2E-10 9.2E-15 109.9 15.5 62 145-215 57-121 (509)
248 COG0218 Predicted GTPase [Gene 99.2 7.8E-10 1.7E-14 95.7 15.5 48 8-59 22-69 (200)
249 KOG0080|consensus 99.2 1.1E-11 2.4E-16 102.0 3.7 54 225-278 62-115 (209)
250 PRK12735 elongation factor Tu; 99.2 4E-10 8.7E-15 110.3 15.4 65 145-215 77-142 (396)
251 PRK00093 GTP-binding protein D 99.2 1.6E-10 3.5E-15 114.7 12.5 65 145-215 223-298 (435)
252 TIGR02034 CysN sulfate adenyly 99.2 2.5E-10 5.4E-15 112.1 13.0 67 144-215 81-147 (406)
253 KOG0093|consensus 99.2 2.2E-11 4.7E-16 98.8 4.5 53 223-275 70-122 (193)
254 cd04102 RabL3 RabL3 (Rab-like3 99.2 4.5E-11 9.7E-16 106.1 6.3 111 224-346 55-197 (202)
255 PRK05124 cysN sulfate adenylyl 99.2 5E-10 1.1E-14 111.8 14.1 66 145-215 109-174 (474)
256 PF09439 SRPRB: Signal recogni 99.1 1.5E-10 3.2E-15 100.0 8.6 71 145-215 51-126 (181)
257 KOG0462|consensus 99.1 7.3E-10 1.6E-14 107.7 14.0 67 143-215 125-191 (650)
258 CHL00071 tufA elongation facto 99.1 1.6E-09 3.4E-14 106.6 16.6 65 145-215 77-142 (409)
259 KOG0394|consensus 99.1 4.4E-11 9.6E-16 100.9 4.8 71 225-304 60-130 (210)
260 KOG0086|consensus 99.1 6.8E-11 1.5E-15 96.5 5.0 55 224-278 59-113 (214)
261 PLN00043 elongation factor 1-a 99.1 5.1E-10 1.1E-14 110.9 12.2 65 144-214 86-158 (447)
262 PRK05506 bifunctional sulfate 99.1 7.4E-10 1.6E-14 114.8 13.8 66 145-215 106-171 (632)
263 PF01926 MMR_HSR1: 50S ribosom 99.1 1.1E-09 2.3E-14 88.3 11.7 59 145-210 49-116 (116)
264 PLN03126 Elongation factor Tu; 99.1 2.4E-09 5.2E-14 106.7 16.6 65 145-215 146-211 (478)
265 PRK09866 hypothetical protein; 99.1 3.6E-09 7.9E-14 106.0 17.0 148 181-348 186-352 (741)
266 KOG0072|consensus 99.1 2.5E-10 5.4E-15 92.5 7.0 69 145-215 64-133 (182)
267 PRK00007 elongation factor G; 99.1 4.1E-09 8.9E-14 110.2 18.1 65 145-215 77-141 (693)
268 KOG0393|consensus 99.1 1.2E-10 2.5E-15 101.2 5.2 70 225-308 55-125 (198)
269 PF10662 PduV-EutP: Ethanolami 99.1 6.5E-10 1.4E-14 92.0 9.3 138 12-190 3-142 (143)
270 KOG0095|consensus 99.1 1.4E-10 3.1E-15 94.3 4.9 53 225-277 58-110 (213)
271 PRK12740 elongation factor G; 99.1 1.2E-09 2.5E-14 114.3 13.0 65 145-215 62-126 (668)
272 COG0536 Obg Predicted GTPase [ 99.1 2E-09 4.3E-14 99.7 12.5 70 145-214 209-288 (369)
273 COG3596 Predicted GTPase [Gene 99.1 2.4E-09 5.3E-14 96.5 12.5 67 145-215 89-162 (296)
274 COG0481 LepA Membrane GTPase L 99.1 9.6E-10 2.1E-14 105.3 10.4 70 140-215 73-142 (603)
275 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.3E-10 5.1E-15 100.0 5.4 71 223-307 53-124 (182)
276 PRK12739 elongation factor G; 99.0 1E-08 2.2E-13 107.3 18.1 65 145-215 75-139 (691)
277 COG1084 Predicted GTPase [Gene 99.0 4.1E-09 8.8E-14 97.2 13.2 117 7-215 165-294 (346)
278 KOG0091|consensus 99.0 2.9E-10 6.2E-15 94.0 4.8 53 224-276 59-111 (213)
279 PRK00049 elongation factor Tu; 99.0 9.3E-09 2E-13 100.7 16.3 65 145-215 77-142 (396)
280 cd04131 Rnd Rnd subfamily. Th 99.0 4.2E-10 9.1E-15 98.0 5.2 71 223-307 49-120 (178)
281 KOG1145|consensus 99.0 1.1E-08 2.5E-13 99.6 15.3 62 145-215 203-267 (683)
282 cd01852 AIG1 AIG1 (avrRpt2-ind 99.0 9E-09 1.9E-13 91.0 13.4 69 145-215 51-130 (196)
283 cd04133 Rop_like Rop subfamily 99.0 7.3E-10 1.6E-14 96.3 5.7 73 223-309 49-122 (176)
284 KOG0090|consensus 99.0 6.3E-09 1.4E-13 90.2 11.1 71 145-215 84-159 (238)
285 PRK14845 translation initiatio 99.0 1.2E-08 2.6E-13 109.1 15.4 62 145-215 528-592 (1049)
286 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.9 1E-09 2.2E-14 99.4 5.8 71 223-307 61-132 (232)
287 PTZ00327 eukaryotic translatio 98.9 1.8E-08 4E-13 99.8 15.1 66 145-215 119-185 (460)
288 PTZ00141 elongation factor 1- 98.9 1.2E-08 2.5E-13 101.3 13.6 65 144-214 86-158 (446)
289 cd04120 Rab12 Rab12 subfamily. 98.9 1.1E-09 2.4E-14 97.3 5.7 68 223-303 49-116 (202)
290 TIGR00101 ureG urease accessor 98.9 3.1E-08 6.8E-13 87.7 14.9 79 247-348 113-195 (199)
291 PLN03127 Elongation factor Tu; 98.9 3.1E-08 6.7E-13 98.2 16.4 65 145-215 126-191 (447)
292 TIGR00490 aEF-2 translation el 98.9 4.7E-09 1E-13 110.2 10.6 67 143-215 86-152 (720)
293 KOG0077|consensus 98.9 1.2E-08 2.6E-13 84.9 10.3 70 145-215 66-135 (193)
294 KOG0094|consensus 98.9 1.3E-09 2.8E-14 93.0 4.4 73 201-278 54-126 (221)
295 KOG0395|consensus 98.9 2.3E-09 5.1E-14 94.5 6.0 66 225-302 53-118 (196)
296 cd04121 Rab40 Rab40 subfamily. 98.9 1.8E-09 3.9E-14 94.9 5.3 67 223-303 55-121 (189)
297 cd01875 RhoG RhoG subfamily. 98.9 2E-09 4.4E-14 94.7 5.4 73 223-309 51-124 (191)
298 PRK13768 GTPase; Provisional 98.9 3.9E-08 8.4E-13 90.5 13.6 68 145-215 99-176 (253)
299 PRK09435 membrane ATPase/prote 98.9 9.1E-08 2E-12 90.8 16.0 101 227-351 153-262 (332)
300 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.4E-08 5.3E-13 93.1 11.8 27 7-33 35-61 (313)
301 smart00176 RAN Ran (Ras-relate 98.9 2.8E-09 6.1E-14 94.5 5.4 110 223-348 44-153 (200)
302 KOG0705|consensus 98.9 5.6E-09 1.2E-13 101.5 7.8 111 9-211 29-139 (749)
303 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.8 3.9E-09 8.4E-14 95.1 5.9 72 223-308 49-121 (222)
304 TIGR00073 hypB hydrogenase acc 98.8 1.2E-07 2.6E-12 84.6 15.3 55 294-348 150-206 (207)
305 cd01874 Cdc42 Cdc42 subfamily. 98.8 4.9E-09 1.1E-13 91.0 6.0 72 223-308 49-121 (175)
306 cd01853 Toc34_like Toc34-like 98.8 4E-08 8.6E-13 90.0 11.9 28 7-34 28-55 (249)
307 PTZ00099 rab6; Provisional 98.8 5.5E-09 1.2E-13 90.8 5.0 69 223-304 29-97 (176)
308 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.8 7E-09 1.5E-13 89.7 5.6 68 224-303 51-118 (172)
309 cd04176 Rap2 Rap2 subgroup. T 98.8 1E-08 2.2E-13 87.4 5.9 112 224-347 50-161 (163)
310 cd04136 Rap_like Rap-like subf 98.8 1.1E-08 2.4E-13 87.0 6.1 112 224-347 50-161 (163)
311 cd01871 Rac1_like Rac1-like su 98.8 9.1E-09 2E-13 89.2 5.6 70 224-307 50-120 (174)
312 KOG0097|consensus 98.8 5.6E-09 1.2E-13 84.2 3.6 54 224-277 61-114 (215)
313 KOG0081|consensus 98.8 6.6E-09 1.4E-13 85.6 3.8 52 224-275 68-119 (219)
314 cd04175 Rap1 Rap1 subgroup. T 98.7 1.4E-08 3.1E-13 86.7 5.9 112 224-347 50-161 (164)
315 KOG0088|consensus 98.7 7E-09 1.5E-13 85.4 3.3 52 224-275 63-114 (218)
316 COG5256 TEF1 Translation elong 98.7 5.2E-08 1.1E-12 92.6 9.5 69 144-215 86-159 (428)
317 cd04128 Spg1 Spg1p. Spg1p (se 98.7 1.4E-08 3.1E-13 88.7 5.2 70 223-306 49-118 (182)
318 cd04126 Rab20 Rab20 subfamily. 98.7 2.1E-08 4.6E-13 90.2 6.1 71 223-306 44-114 (220)
319 cd04149 Arf6 Arf6 subfamily. 98.7 2.3E-08 5E-13 86.1 5.8 111 222-346 52-167 (168)
320 cd04144 Ras2 Ras2 subfamily. 98.7 2E-08 4.4E-13 88.2 5.5 68 224-303 48-117 (190)
321 cd04127 Rab27A Rab27a subfamil 98.7 1.7E-08 3.7E-13 87.5 4.9 69 223-303 63-131 (180)
322 cd00877 Ran Ran (Ras-related n 98.7 2.2E-08 4.8E-13 86.0 5.4 110 223-348 49-158 (166)
323 KOG0083|consensus 98.7 1.6E-08 3.4E-13 80.9 3.9 54 224-277 48-101 (192)
324 PLN03071 GTP-binding nuclear p 98.7 2.4E-08 5.3E-13 89.9 5.5 110 223-348 62-171 (219)
325 PTZ00369 Ras-like protein; Pro 98.7 3.3E-08 7.2E-13 86.8 6.0 69 224-304 54-122 (189)
326 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 3.1E-08 6.7E-13 87.9 5.8 68 224-303 51-121 (201)
327 KOG4252|consensus 98.7 9.5E-09 2.1E-13 86.3 2.0 67 224-304 70-136 (246)
328 cd04122 Rab14 Rab14 subfamily. 98.6 4E-08 8.6E-13 84.2 5.5 67 224-303 52-118 (166)
329 cd04132 Rho4_like Rho4-like su 98.6 4E-08 8.6E-13 85.9 5.5 71 224-308 50-121 (187)
330 PTZ00258 GTP-binding protein; 98.6 3.9E-07 8.4E-12 88.2 12.8 25 8-32 19-43 (390)
331 cd04150 Arf1_5_like Arf1-Arf5- 98.6 4E-08 8.6E-13 83.8 5.1 112 222-346 43-158 (159)
332 cd04161 Arl2l1_Arl13_like Arl2 98.6 5.7E-08 1.2E-12 83.5 6.0 110 225-346 45-166 (167)
333 cd01873 RhoBTB RhoBTB subfamil 98.6 4.8E-08 1E-12 86.3 5.6 66 225-306 68-134 (195)
334 cd04108 Rab36_Rab34 Rab34/Rab3 98.6 3.9E-08 8.5E-13 84.8 4.9 71 223-305 49-119 (170)
335 cd04134 Rho3 Rho3 subfamily. 98.6 4.7E-08 1E-12 85.9 5.3 74 223-310 48-122 (189)
336 PF03029 ATP_bind_1: Conserved 98.6 1.5E-07 3.2E-12 85.7 8.6 67 145-215 93-170 (238)
337 smart00177 ARF ARF-like small 98.6 5.4E-08 1.2E-12 84.4 5.4 114 222-347 56-172 (175)
338 cd00066 G-alpha G protein alph 98.6 7.6E-07 1.7E-11 84.6 13.7 70 145-215 163-242 (317)
339 cd04138 H_N_K_Ras_like H-Ras/N 98.6 7.9E-08 1.7E-12 81.3 6.0 111 224-347 50-160 (162)
340 cd04117 Rab15 Rab15 subfamily. 98.6 6.8E-08 1.5E-12 82.4 5.3 68 223-303 49-116 (161)
341 cd04124 RabL2 RabL2 subfamily. 98.6 7.6E-08 1.7E-12 82.1 5.5 110 223-349 49-158 (161)
342 cd04109 Rab28 Rab28 subfamily. 98.6 6.5E-08 1.4E-12 86.8 5.2 69 223-303 50-120 (215)
343 cd04140 ARHI_like ARHI subfami 98.6 1.1E-07 2.3E-12 81.4 6.1 69 223-303 49-119 (165)
344 smart00174 RHO Rho (Ras homolo 98.6 9.5E-08 2.1E-12 82.3 5.8 71 224-308 47-118 (174)
345 cd04143 Rhes_like Rhes_like su 98.6 9.4E-08 2E-12 87.6 5.9 117 224-352 49-174 (247)
346 cd04145 M_R_Ras_like M-Ras/R-R 98.6 1.2E-07 2.5E-12 80.7 6.1 113 224-348 51-163 (164)
347 smart00173 RAS Ras subfamily o 98.6 1.2E-07 2.6E-12 80.8 6.1 69 224-304 49-117 (164)
348 cd04115 Rab33B_Rab33A Rab33B/R 98.6 8.8E-08 1.9E-12 82.4 5.2 69 223-303 51-120 (170)
349 COG4917 EutP Ethanolamine util 98.5 4.3E-07 9.4E-12 72.2 8.5 22 325-346 122-143 (148)
350 cd04119 RJL RJL (RabJ-Like) su 98.5 8.2E-08 1.8E-12 81.8 4.8 69 223-303 49-121 (168)
351 cd04111 Rab39 Rab39 subfamily. 98.5 1E-07 2.2E-12 85.4 5.3 68 224-303 53-120 (211)
352 cd04103 Centaurin_gamma Centau 98.5 1.2E-07 2.6E-12 80.8 5.5 64 224-304 48-111 (158)
353 PF00071 Ras: Ras family; Int 98.5 1.1E-07 2.4E-12 80.8 5.3 67 224-303 49-115 (162)
354 cd04116 Rab9 Rab9 subfamily. 98.5 1.1E-07 2.4E-12 81.6 5.1 111 224-347 55-169 (170)
355 cd04130 Wrch_1 Wrch-1 subfamil 98.5 1.3E-07 2.7E-12 81.7 5.3 71 224-308 49-120 (173)
356 KOG3886|consensus 98.5 1.5E-07 3.2E-12 82.7 5.3 73 143-215 53-130 (295)
357 cd04162 Arl9_Arfrp2_like Arl9/ 98.5 1.9E-07 4E-12 80.1 5.7 110 223-346 44-163 (164)
358 cd01865 Rab3 Rab3 subfamily. 98.5 1.5E-07 3.2E-12 80.5 5.0 69 223-304 50-118 (165)
359 cd04177 RSR1 RSR1 subgroup. R 98.5 2.1E-07 4.6E-12 79.8 5.8 112 224-347 50-162 (168)
360 KOG1707|consensus 98.5 1.4E-06 3E-11 86.0 11.9 122 3-215 418-540 (625)
361 COG0378 HypB Ni2+-binding GTPa 98.5 7E-06 1.5E-10 70.9 14.7 80 247-347 118-199 (202)
362 PTZ00133 ADP-ribosylation fact 98.5 1.8E-07 4E-12 81.6 5.1 112 223-347 61-176 (182)
363 cd04147 Ras_dva Ras-dva subfam 98.5 2.5E-07 5.5E-12 81.8 5.9 114 224-349 48-163 (198)
364 PLN00223 ADP-ribosylation fact 98.5 1.8E-07 3.8E-12 81.7 4.7 108 223-347 61-176 (181)
365 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 2.3E-07 5E-12 79.2 5.3 67 224-303 52-118 (166)
366 cd04118 Rab24 Rab24 subfamily. 98.5 2.5E-07 5.4E-12 81.3 5.6 70 224-307 51-120 (193)
367 cd01882 BMS1 Bms1. Bms1 is an 98.5 6.5E-06 1.4E-10 74.4 15.0 62 145-215 85-147 (225)
368 cd01867 Rab8_Rab10_Rab13_like 98.4 2.4E-07 5.1E-12 79.4 5.1 68 224-304 53-120 (167)
369 PF03308 ArgK: ArgK protein; 98.4 1.3E-06 2.9E-11 78.9 9.9 88 246-354 142-235 (266)
370 TIGR00750 lao LAO/AO transport 98.4 5.1E-06 1.1E-10 78.4 14.4 55 295-349 175-238 (300)
371 cd04106 Rab23_lke Rab23-like s 98.4 2.3E-07 5E-12 78.7 4.6 68 223-304 51-118 (162)
372 cd04110 Rab35 Rab35 subfamily. 98.4 3E-07 6.6E-12 81.4 5.5 67 224-304 56-122 (199)
373 cd04112 Rab26 Rab26 subfamily. 98.4 2.8E-07 6E-12 81.1 5.1 68 224-304 51-118 (191)
374 PLN03110 Rab GTPase; Provision 98.4 2.7E-07 5.8E-12 82.9 5.1 67 224-303 62-128 (216)
375 cd01868 Rab11_like Rab11-like. 98.4 2.7E-07 5.8E-12 78.7 4.8 111 224-347 53-163 (165)
376 KOG1486|consensus 98.4 1.1E-05 2.4E-10 71.9 14.9 50 295-351 241-290 (364)
377 cd04157 Arl6 Arl6 subfamily. 98.4 4.1E-07 8.9E-12 77.1 5.6 110 225-346 47-161 (162)
378 PF00350 Dynamin_N: Dynamin fa 98.4 9.8E-07 2.1E-11 75.6 7.9 62 145-211 103-168 (168)
379 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 3.6E-07 7.8E-12 79.8 5.3 117 223-353 52-174 (183)
380 cd01866 Rab2 Rab2 subfamily. 98.4 3.8E-07 8.2E-12 78.3 5.2 68 224-304 54-121 (168)
381 cd04158 ARD1 ARD1 subfamily. 98.4 4.4E-07 9.6E-12 78.0 5.6 109 225-347 45-159 (169)
382 cd04101 RabL4 RabL4 (Rab-like4 98.4 3.4E-07 7.3E-12 77.9 4.6 112 223-348 52-163 (164)
383 cd04135 Tc10 TC10 subfamily. 98.4 5.8E-07 1.2E-11 77.4 6.0 70 225-308 50-120 (174)
384 cd04125 RabA_like RabA-like su 98.4 4.2E-07 9.2E-12 79.5 5.2 68 223-303 49-116 (188)
385 cd04146 RERG_RasL11_like RERG/ 98.4 5.7E-07 1.2E-11 76.8 5.9 68 224-303 48-117 (165)
386 KOG1532|consensus 98.4 7.9E-06 1.7E-10 73.8 13.2 29 323-351 238-266 (366)
387 cd01864 Rab19 Rab19 subfamily. 98.4 3.8E-07 8.2E-12 77.9 4.7 111 224-347 53-164 (165)
388 KOG1490|consensus 98.4 1.8E-06 3.9E-11 83.8 9.6 47 7-59 165-213 (620)
389 PF05783 DLIC: Dynein light in 98.4 8E-06 1.7E-10 81.0 14.5 54 295-348 199-263 (472)
390 smart00275 G_alpha G protein a 98.4 1.8E-06 3.9E-11 82.8 9.5 70 145-215 186-265 (342)
391 PLN00116 translation elongatio 98.4 1.8E-06 4E-11 92.2 10.3 66 143-214 98-163 (843)
392 cd01859 MJ1464 MJ1464. This f 98.3 1.4E-06 3E-11 73.9 7.5 92 238-348 4-95 (156)
393 cd01863 Rab18 Rab18 subfamily. 98.3 6.8E-07 1.5E-11 75.8 5.6 111 224-347 50-160 (161)
394 PF05049 IIGP: Interferon-indu 98.3 1.9E-06 4.1E-11 82.6 9.0 26 7-32 32-57 (376)
395 PLN03118 Rab family protein; P 98.3 7.3E-07 1.6E-11 79.7 5.8 68 224-303 63-131 (211)
396 cd04113 Rab4 Rab4 subfamily. 98.3 5.6E-07 1.2E-11 76.4 4.9 67 224-303 50-116 (161)
397 cd04154 Arl2 Arl2 subfamily. 98.3 6.1E-07 1.3E-11 77.4 5.1 109 224-346 59-172 (173)
398 PF04548 AIG1: AIG1 family; I 98.3 3.4E-06 7.3E-11 75.5 10.0 25 11-35 1-25 (212)
399 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.3 7.9E-07 1.7E-11 76.9 5.4 112 222-346 58-173 (174)
400 KOG3905|consensus 98.3 1.8E-05 3.9E-10 73.1 14.2 51 296-346 226-287 (473)
401 cd04156 ARLTS1 ARLTS1 subfamil 98.3 9E-07 2E-11 75.0 5.3 110 225-346 46-159 (160)
402 cd01855 YqeH YqeH. YqeH is an 98.3 1.5E-06 3.2E-11 76.4 6.8 93 236-348 24-124 (190)
403 PTZ00416 elongation factor 2; 98.3 3.4E-06 7.4E-11 90.0 10.5 66 143-214 92-157 (836)
404 PRK07560 elongation factor EF- 98.3 1.5E-06 3.3E-11 91.6 7.8 67 143-215 87-153 (731)
405 cd04151 Arl1 Arl1 subfamily. 98.3 1E-06 2.2E-11 74.8 5.3 109 225-346 45-157 (158)
406 cd00878 Arf_Arl Arf (ADP-ribos 98.3 1.6E-06 3.4E-11 73.4 6.4 111 224-346 44-157 (158)
407 PRK10463 hydrogenase nickel in 98.3 1.4E-05 3.1E-10 74.2 13.1 52 295-346 233-286 (290)
408 cd01893 Miro1 Miro1 subfamily. 98.3 1.2E-06 2.7E-11 74.9 5.6 111 224-348 48-163 (166)
409 COG1703 ArgK Putative periplas 98.3 3.2E-05 6.9E-10 71.1 14.8 89 246-355 164-260 (323)
410 TIGR00993 3a0901s04IAP86 chlor 98.3 5.9E-06 1.3E-10 83.7 11.0 71 145-215 168-250 (763)
411 COG5257 GCD11 Translation init 98.3 8E-06 1.7E-10 75.3 10.8 64 144-215 87-154 (415)
412 cd01861 Rab6 Rab6 subfamily. 98.3 1E-06 2.3E-11 74.6 4.9 111 224-347 50-160 (161)
413 smart00178 SAR Sar1p-like memb 98.3 1.8E-06 3.9E-11 75.4 6.5 111 223-346 61-182 (184)
414 PRK00098 GTPase RsgA; Reviewed 98.3 2.8E-06 6E-11 80.1 8.1 85 244-345 78-163 (298)
415 cd04142 RRP22 RRP22 subfamily. 98.3 1.6E-06 3.4E-11 76.8 5.8 114 224-349 50-174 (198)
416 cd04160 Arfrp1 Arfrp1 subfamil 98.2 1.4E-06 3.1E-11 74.3 5.2 110 224-346 51-166 (167)
417 TIGR00491 aIF-2 translation in 98.2 6.3E-07 1.4E-11 91.5 3.4 91 225-342 71-161 (590)
418 cd01870 RhoA_like RhoA-like su 98.2 1.6E-06 3.4E-11 74.7 5.3 70 224-307 50-120 (175)
419 KOG0096|consensus 98.2 1E-06 2.2E-11 75.0 3.9 110 222-347 58-167 (216)
420 PF08477 Miro: Miro-like prote 98.2 8.8E-07 1.9E-11 71.3 3.4 67 225-303 52-119 (119)
421 COG2895 CysN GTPases - Sulfate 98.2 1.3E-05 2.9E-10 74.8 11.3 66 145-215 88-153 (431)
422 PRK12289 GTPase RsgA; Reviewed 98.2 3.7E-06 8.1E-11 80.7 8.1 91 238-346 81-172 (352)
423 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.4E-06 9.5E-11 78.3 8.4 86 243-346 75-161 (287)
424 KOG0468|consensus 98.2 6.1E-06 1.3E-10 82.4 9.6 67 143-215 197-263 (971)
425 cd04123 Rab21 Rab21 subfamily. 98.2 1.6E-06 3.5E-11 73.2 4.8 111 224-347 50-160 (162)
426 cd01892 Miro2 Miro2 subfamily. 98.2 1.4E-06 3.1E-11 74.9 4.5 110 224-348 55-165 (169)
427 smart00053 DYNc Dynamin, GTPas 98.2 5.4E-05 1.2E-09 68.8 14.8 27 9-35 25-51 (240)
428 cd04148 RGK RGK subfamily. Th 98.2 2.2E-06 4.8E-11 77.2 5.8 67 223-303 50-117 (221)
429 KOG1144|consensus 98.2 9.1E-06 2E-10 82.1 10.5 62 145-215 542-606 (1064)
430 PLN03108 Rab family protein; P 98.2 1.8E-06 4E-11 77.1 5.2 67 224-303 56-122 (210)
431 cd01860 Rab5_related Rab5-rela 98.2 2E-06 4.3E-11 73.0 4.9 111 224-347 51-161 (163)
432 cd04129 Rho2 Rho2 subfamily. 98.2 2.3E-06 5E-11 74.9 5.3 69 224-306 50-119 (187)
433 cd00157 Rho Rho (Ras homology) 98.2 2.6E-06 5.7E-11 72.8 5.4 109 224-346 49-170 (171)
434 COG1100 GTPase SAR1 and relate 98.2 2.4E-06 5.1E-11 76.5 5.3 114 223-349 54-185 (219)
435 cd04139 RalA_RalB RalA/RalB su 98.2 3.1E-06 6.6E-11 71.7 5.7 113 224-348 49-161 (164)
436 KOG3883|consensus 98.2 2.9E-06 6.4E-11 69.8 5.2 86 221-322 58-144 (198)
437 smart00175 RAB Rab subfamily o 98.1 2.6E-06 5.7E-11 72.2 4.7 112 224-348 50-161 (164)
438 TIGR03597 GTPase_YqeH ribosome 98.1 4.4E-06 9.6E-11 80.8 6.3 95 234-347 51-151 (360)
439 cd01862 Rab7 Rab7 subfamily. 98.1 3.5E-06 7.7E-11 72.1 5.0 114 224-349 50-167 (172)
440 PRK12288 GTPase RsgA; Reviewed 98.1 1.3E-05 2.8E-10 76.9 9.3 85 245-346 119-205 (347)
441 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 4.2E-06 9.1E-11 69.9 5.1 24 12-35 85-108 (141)
442 COG4108 PrfC Peptide chain rel 98.1 8.2E-05 1.8E-09 71.5 14.1 66 144-215 82-147 (528)
443 cd04137 RheB Rheb (Ras Homolog 98.1 4.5E-06 9.7E-11 72.3 5.2 117 224-352 50-166 (180)
444 cd01858 NGP_1 NGP-1. Autoanti 98.1 4.7E-06 1E-10 70.9 5.2 25 9-33 101-125 (157)
445 TIGR02836 spore_IV_A stage IV 98.0 7.6E-05 1.6E-09 71.9 13.0 24 10-33 17-40 (492)
446 PRK09601 GTP-binding protein Y 98.0 3E-05 6.6E-10 74.3 10.4 23 11-33 3-25 (364)
447 cd04178 Nucleostemin_like Nucl 98.0 6E-06 1.3E-10 71.4 5.0 24 10-33 117-140 (172)
448 KOG2486|consensus 98.0 1.6E-05 3.4E-10 72.1 7.5 27 7-33 133-159 (320)
449 cd04114 Rab30 Rab30 subfamily. 98.0 6.8E-06 1.5E-10 70.2 5.1 111 224-347 57-167 (169)
450 PTZ00132 GTP-binding nuclear p 98.0 8.3E-06 1.8E-10 73.0 5.6 111 223-349 58-168 (215)
451 cd01900 YchF YchF subfamily. 98.0 3.2E-05 6.9E-10 71.7 9.3 21 13-33 1-21 (274)
452 cd04159 Arl10_like Arl10-like 98.0 1.1E-05 2.3E-10 67.6 5.7 112 223-346 44-158 (159)
453 PF00735 Septin: Septin; Inte 98.0 0.00016 3.4E-09 67.5 13.9 27 10-36 4-30 (281)
454 PRK04004 translation initiatio 98.0 6.1E-06 1.3E-10 84.6 4.8 94 225-348 73-169 (586)
455 cd01890 LepA LepA subfamily. 98.0 1.1E-05 2.4E-10 69.7 5.6 105 224-347 68-175 (179)
456 KOG0070|consensus 98.0 3.6E-05 7.7E-10 65.7 8.2 116 221-348 59-177 (181)
457 cd00879 Sar1 Sar1 subfamily. 98.0 9.8E-06 2.1E-10 70.8 5.0 109 225-347 65-189 (190)
458 COG1217 TypA Predicted membran 97.9 0.00024 5.2E-09 68.8 14.2 67 143-215 68-134 (603)
459 KOG0458|consensus 97.9 5.7E-05 1.2E-09 74.9 10.3 68 144-215 256-329 (603)
460 cd00876 Ras Ras family. The R 97.9 1.3E-05 2.9E-10 67.4 5.2 112 224-347 48-159 (160)
461 cd01856 YlqF YlqF. Proteins o 97.9 1.7E-05 3.7E-10 68.5 5.6 28 8-35 113-140 (171)
462 COG5258 GTPBP1 GTPase [General 97.9 0.00014 3.1E-09 68.8 11.8 63 145-216 203-270 (527)
463 cd01859 MJ1464 MJ1464. This f 97.9 1.7E-05 3.6E-10 67.3 5.2 25 9-33 100-124 (156)
464 KOG1487|consensus 97.9 3.5E-05 7.7E-10 69.1 7.3 163 145-346 108-278 (358)
465 cd04155 Arl3 Arl3 subfamily. 97.9 2.6E-05 5.6E-10 66.9 5.7 107 223-346 58-172 (173)
466 TIGR00157 ribosome small subun 97.8 5.3E-05 1.2E-09 69.3 7.7 58 153-215 23-81 (245)
467 PRK09563 rbgA GTPase YlqF; Rev 97.8 2.4E-05 5.3E-10 73.3 5.6 26 8-33 119-144 (287)
468 PF00025 Arf: ADP-ribosylation 97.8 4E-05 8.6E-10 66.4 6.4 111 225-347 60-174 (175)
469 cd04105 SR_beta Signal recogni 97.8 4.7E-05 1E-09 67.7 6.6 71 224-306 49-123 (203)
470 COG0480 FusA Translation elong 97.8 0.0001 2.3E-09 76.4 9.8 67 143-215 76-142 (697)
471 TIGR03596 GTPase_YlqF ribosome 97.8 3.5E-05 7.6E-10 71.8 5.6 26 8-33 116-141 (276)
472 COG1161 Predicted GTPases [Gen 97.8 2.9E-05 6.3E-10 73.9 5.0 35 7-46 129-163 (322)
473 KOG1143|consensus 97.8 0.00019 4.2E-09 67.5 10.1 62 145-215 251-317 (591)
474 cd01855 YqeH YqeH. YqeH is an 97.7 3.3E-05 7.1E-10 67.8 4.6 25 10-34 127-151 (190)
475 cd00154 Rab Rab family. Rab G 97.7 3.9E-05 8.4E-10 64.1 4.8 110 224-346 50-159 (159)
476 KOG0075|consensus 97.7 5.8E-05 1.2E-09 61.9 5.4 114 225-350 67-183 (186)
477 cd01849 YlqF_related_GTPase Yl 97.7 0.00012 2.7E-09 61.9 7.8 83 248-347 1-83 (155)
478 KOG0073|consensus 97.7 5.5E-05 1.2E-09 63.2 5.3 114 223-348 60-177 (185)
479 KOG0410|consensus 97.6 0.00029 6.2E-09 65.4 9.1 32 164-195 255-286 (410)
480 KOG4273|consensus 97.6 0.00031 6.7E-09 62.7 9.0 46 166-215 78-123 (418)
481 KOG0082|consensus 97.6 0.0011 2.4E-08 63.0 13.2 70 145-215 197-276 (354)
482 KOG0461|consensus 97.6 0.0011 2.3E-08 62.1 12.5 24 8-31 5-28 (522)
483 cd01849 YlqF_related_GTPase Yl 97.6 8.3E-05 1.8E-09 63.0 4.9 26 8-33 98-123 (155)
484 cd01858 NGP_1 NGP-1. Autoanti 97.6 0.00027 5.9E-09 59.9 7.9 90 243-348 5-94 (157)
485 cd01885 EF2 EF2 (for archaea a 97.6 9.9E-05 2.1E-09 66.5 5.4 65 224-305 74-138 (222)
486 COG0012 Predicted GTPase, prob 97.6 0.00018 3.9E-09 68.3 7.1 42 292-333 206-248 (372)
487 TIGR00064 ftsY signal recognit 97.6 0.0023 5.1E-08 59.4 14.5 91 225-340 157-259 (272)
488 COG3276 SelB Selenocysteine-sp 97.5 0.00081 1.8E-08 65.0 11.1 63 145-215 52-117 (447)
489 cd01898 Obg Obg subfamily. Th 97.5 0.00014 3E-09 62.0 5.3 112 224-347 49-169 (170)
490 PF10662 PduV-EutP: Ethanolami 97.5 0.0003 6.6E-09 58.4 7.0 80 243-344 60-141 (143)
491 cd01891 TypA_BipA TypA (tyrosi 97.5 0.00014 3E-09 64.0 5.3 99 224-339 66-172 (194)
492 PRK12288 GTPase RsgA; Reviewed 97.5 0.0001 2.2E-09 70.8 4.6 21 13-33 208-228 (347)
493 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00025 5.5E-09 59.0 6.4 76 242-336 7-84 (141)
494 KOG1491|consensus 97.5 0.00041 9E-09 64.7 7.9 27 9-35 19-45 (391)
495 TIGR03597 GTPase_YqeH ribosome 97.5 0.00018 3.9E-09 69.6 5.7 23 11-33 155-177 (360)
496 PRK13796 GTPase YqeH; Provisio 97.5 0.00015 3.2E-09 70.4 4.9 23 11-33 161-183 (365)
497 KOG0076|consensus 97.4 0.00028 6E-09 59.7 5.8 115 222-348 68-186 (197)
498 PF03193 DUF258: Protein of un 97.4 0.00011 2.4E-09 62.4 3.2 23 11-33 36-58 (161)
499 PRK10416 signal recognition pa 97.4 0.0063 1.4E-07 57.8 15.1 38 297-340 264-301 (318)
500 KOG0071|consensus 97.4 0.0003 6.5E-09 57.3 5.0 112 225-348 63-177 (180)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.9e-38 Score=268.20 Aligned_cols=167 Identities=29% Similarity=0.448 Sum_probs=149.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...|||+|+|++|||||||+.||..+.|++.|.+|++ |+..|++.+++..++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iK--------------------------- 59 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIK--------------------------- 59 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEE---------------------------
Confidence 3579999999999999999999999999999999999 999999999999999
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+||++|+.+..+||++
T Consensus 60 ----------------------------------------------------------lQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 60 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred ----------------------------------------------------------EEeeeccccHHHhhhhHhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|+|+|+|||++++.||+++..|+.+++++.. ..+|.+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~--~~v~~l----------------------------------------- 118 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYAS--ENVPKL----------------------------------------- 118 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhcc--CCCCeE-----------------------------------------
Confidence 9999999999999999999999999998753 233444
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe-
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ- 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~- 325 (373)
|||||+|+.+.+.|+.++++.++...++|
T Consensus 119 --------------------------------------------------LVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 119 --------------------------------------------------LVGNKCDLTEKRVVSTEEAQEFADELGIPI 148 (205)
T ss_pred --------------------------------------------------EEeeccccHhheecCHHHHHHHHHhcCCcc
Confidence 55555555666778888999999999999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|+|+|||++.||+++|..++...+...
T Consensus 149 f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 149 FLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred eeecccCCccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999998654433
No 2
>KOG0092|consensus
Probab=100.00 E-value=9.8e-38 Score=262.88 Aligned_cols=163 Identities=28% Similarity=0.459 Sum_probs=148.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|+.|||||||+.||..+.|.+...||++ .|+++++.+++..++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ik--------------------------- 55 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIK--------------------------- 55 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEE---------------------------
Confidence 4579999999999999999999999999998899999 889999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
++||||+|+|+|+++.+.||++
T Consensus 56 ----------------------------------------------------------feIWDTAGQERy~slapMYyRg 77 (200)
T KOG0092|consen 56 ----------------------------------------------------------FEIWDTAGQERYHSLAPMYYRG 77 (200)
T ss_pred ----------------------------------------------------------EEEEEcCCcccccccccceecC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++|+|||+++.+||..++.|..++.+..+ +++.+.|||||+||.+
T Consensus 78 A~AAivvYDit~~~SF~~aK~WvkeL~~~~~--~~~vialvGNK~DL~~------------------------------- 124 (200)
T KOG0092|consen 78 ANAAIVVYDITDEESFEKAKNWVKELQRQAS--PNIVIALVGNKADLLE------------------------------- 124 (200)
T ss_pred CcEEEEEEecccHHHHHHHHHHHHHHHhhCC--CCeEEEEecchhhhhh-------------------------------
Confidence 9999999999999999999999999998753 5666777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.|.|..++++.+|+..|..|
T Consensus 125 ------------------------------------------------------------~R~V~~~ea~~yAe~~gll~ 144 (200)
T KOG0092|consen 125 ------------------------------------------------------------RREVEFEEAQAYAESQGLLF 144 (200)
T ss_pred ------------------------------------------------------------cccccHHHHHHHHHhcCCEE
Confidence 45677888999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
||+|||||.||+++|..|++.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999999954
No 3
>KOG0078|consensus
Probab=100.00 E-value=3.3e-36 Score=258.35 Aligned_cols=165 Identities=27% Similarity=0.434 Sum_probs=149.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+.||..+.|...+..|++ |+..+++..++..+.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~-------------------------- 62 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIK-------------------------- 62 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEE--------------------------
Confidence 34589999999999999999999999999999999999 999999999998888
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++|||+||++|+.+...||+
T Consensus 63 -----------------------------------------------------------lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 63 -----------------------------------------------------------LQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred -----------------------------------------------------------EEEEEcccchhHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|+++++|||+++..||+++..|+..+.+... +.+|++
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~--~~v~~~---------------------------------------- 121 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHAS--DDVVKI---------------------------------------- 121 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCC--CCCcEE----------------------------------------
Confidence 99999999999999999999999999988752 244444
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
|||||+|++.+|+|+.+.++.+|..+|++
T Consensus 122 ---------------------------------------------------LvGNK~D~~~~R~V~~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 122 ---------------------------------------------------LVGNKCDLEEKRQVSKERGEALAREYGIK 150 (207)
T ss_pred ---------------------------------------------------EeeccccccccccccHHHHHHHHHHhCCe
Confidence 55555555557788889999999999999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|||||+|.||+|+|..+++.++
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999654
No 4
>KOG0394|consensus
Probab=100.00 E-value=2.3e-36 Score=251.97 Aligned_cols=173 Identities=23% Similarity=0.414 Sum_probs=149.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+|||+...|...|.+|++ ||.+|++.+++..+.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vt-------------------------- 59 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVT-------------------------- 59 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEE--------------------------
Confidence 45579999999999999999999999999999999999 999999999988877
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
++||||+||++|.++...+|+
T Consensus 60 -----------------------------------------------------------lQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 60 -----------------------------------------------------------LQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred -----------------------------------------------------------EEEEecccHHHhhhcccceec
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++|+.++|||+++++||++|..|.+++..+.. ++..-|++|+|||.|+...
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--------------------------- 133 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--------------------------- 133 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC---------------------------
Confidence 99999999999999999999999999987763 2234555555555555431
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+|+|+...++.|++..|
T Consensus 134 --------------------------------------------------------------~~r~VS~~~Aq~WC~s~g 151 (210)
T KOG0394|consen 134 --------------------------------------------------------------KSRQVSEKKAQTWCKSKG 151 (210)
T ss_pred --------------------------------------------------------------ccceeeHHHHHHHHHhcC
Confidence 136778888888887775
Q ss_pred -CeEEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 324 -FQLLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 324 -~~~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
+||||+|||.+.||+++|+++++.+.....
T Consensus 152 nipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 152 NIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 899999999999999999999998755443
No 5
>KOG0094|consensus
Probab=100.00 E-value=7.4e-36 Score=251.40 Aligned_cols=164 Identities=26% Similarity=0.469 Sum_probs=147.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|+.+||||||++||+.+.|...|.+|++ ||..+++.+.+..+.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vr--------------------------- 72 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR--------------------------- 72 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEE---------------------------
Confidence 3459999999999999999999999999999999999 999999988888888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
|++|||+|||+|+.+.+.|+++
T Consensus 73 ----------------------------------------------------------LQlWDTAGQERFrslipsY~Rd 94 (221)
T KOG0094|consen 73 ----------------------------------------------------------LQLWDTAGQERFRSLIPSYIRD 94 (221)
T ss_pred ----------------------------------------------------------EEEEecccHHHHhhhhhhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+.++|+|||+++..||++...|++.+++.++. .++-
T Consensus 95 s~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs-~~vi------------------------------------------- 130 (221)
T KOG0094|consen 95 SSVAVIVYDITDRNSFENTSKWIEDVRRERGS-DDVI------------------------------------------- 130 (221)
T ss_pred CeEEEEEEeccccchHHHHHHHHHHHHhccCC-CceE-------------------------------------------
Confidence 99999999999999999999999999876531 1122
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
++|||||.||.++|+++.++++..|+.+++.|
T Consensus 131 ------------------------------------------------I~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f 162 (221)
T KOG0094|consen 131 ------------------------------------------------IFLVGNKTDLSDKRQVSIEEGERKAKELNAEF 162 (221)
T ss_pred ------------------------------------------------EEEEcccccccchhhhhHHHHHHHHHHhCcEE
Confidence 23777777777788999999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||++|.||+++|..|+.+.
T Consensus 163 ~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 163 IETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred EEecccCCCCHHHHHHHHHHhc
Confidence 9999999999999999988754
No 6
>KOG0098|consensus
Probab=100.00 E-value=1e-35 Score=248.49 Aligned_cols=166 Identities=28% Similarity=0.384 Sum_probs=149.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
|+....+|++++|+.|||||||+.||+...|.+.+..|++ |+-.+.+.+++..++
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IK------------------------ 56 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIK------------------------ 56 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEE------------------------
Confidence 3456789999999999999999999999999999999999 998999999999999
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
|++|||+|++.|++++..|
T Consensus 57 -------------------------------------------------------------lqiwDtaGqe~frsv~~sy 75 (216)
T KOG0098|consen 57 -------------------------------------------------------------LQIWDTAGQESFRSVTRSY 75 (216)
T ss_pred -------------------------------------------------------------EEEEecCCcHHHHHHHHHH
Confidence 9999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
|+++.|+++|||+++++||..|..|+.+++.... +++.++
T Consensus 76 Yr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~--~NmvIm-------------------------------------- 115 (216)
T KOG0098|consen 76 YRGAAGALLVYDITRRESFNHLTSWLEDARQHSN--ENMVIM-------------------------------------- 115 (216)
T ss_pred hccCcceEEEEEccchhhHHHHHHHHHHHHHhcC--CCcEEE--------------------------------------
Confidence 9999999999999999999999999999987631 333333
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
|+|||+||+..|.|+.++++.+|++.|
T Consensus 116 -----------------------------------------------------LiGNKsDL~~rR~Vs~EEGeaFA~ehg 142 (216)
T KOG0098|consen 116 -----------------------------------------------------LIGNKSDLEARREVSKEEGEAFAREHG 142 (216)
T ss_pred -----------------------------------------------------EEcchhhhhccccccHHHHHHHHHHcC
Confidence 556666666677889999999999999
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
..|+|+||+|+.||+|+|.......
T Consensus 143 LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999888754
No 7
>KOG0080|consensus
Probab=100.00 E-value=1.1e-34 Score=236.37 Aligned_cols=164 Identities=25% Similarity=0.374 Sum_probs=147.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+.||+.+.|.+....|++ ||-.+.+.+++..++
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~K--------------------------- 61 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLK--------------------------- 61 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEE---------------------------
Confidence 3469999999999999999999999999999888898 999999999999999
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.||||+|||+|+.+.++||++
T Consensus 62 ----------------------------------------------------------laiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 62 ----------------------------------------------------------LAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred ----------------------------------------------------------EEEEeccchHhhhccCHhHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+.|+|+|||++.+++|.++..|+.++.-++. .+++..+
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Yst-n~diikm----------------------------------------- 121 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKELDLYST-NPDIIKM----------------------------------------- 121 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHHHhhcC-CccHhHh-----------------------------------------
Confidence 9999999999999999999999999988763 2344444
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+||||.|.++.|.|+.+++..+|+.+++-|
T Consensus 122 --------------------------------------------------lVgNKiDkes~R~V~reEG~kfAr~h~~LF 151 (209)
T KOG0080|consen 122 --------------------------------------------------LVGNKIDKESERVVDREEGLKFARKHRCLF 151 (209)
T ss_pred --------------------------------------------------hhcccccchhcccccHHHHHHHHHhhCcEE
Confidence 555555555567788999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||||.+||+..|++++...
T Consensus 152 iE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 152 IECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEcchhhhccHHHHHHHHHHHH
Confidence 9999999999999999999854
No 8
>KOG0079|consensus
Probab=100.00 E-value=8.1e-35 Score=233.84 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=148.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|.+|+|++|||||||+.||..+.|..+|..|++ |+..|++.+++..+.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~Vk----------------------------- 58 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVK----------------------------- 58 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEE-----------------------------
Confidence 46889999999999999999999999999999999 999999999999999
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
++|||++|+|.|+.+...||++.+
T Consensus 59 --------------------------------------------------------LqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 59 --------------------------------------------------------LQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred --------------------------------------------------------EEEeecccHHHHHHHHHHHccCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||+++.+||.++..|++++++.+ +.+|-++|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~nc---dsv~~vLV----------------------------------------- 118 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNC---DSVPKVLV----------------------------------------- 118 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcC---ccccceec-----------------------------------------
Confidence 9999999999999999999999999876 34555554
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
|||+|+.+.|.|..++++.+|...|+.+||
T Consensus 119 --------------------------------------------------GNK~d~~~RrvV~t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 119 --------------------------------------------------GNKNDDPERRVVDTEDARAFALQMGIELFE 148 (198)
T ss_pred --------------------------------------------------ccCCCCccceeeehHHHHHHHHhcCchhee
Confidence 455555555667788999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+|||.+.|++.+|..|.+++....
T Consensus 149 TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999999886665
No 9
>KOG0091|consensus
Probab=100.00 E-value=4.4e-34 Score=233.38 Aligned_cols=170 Identities=26% Similarity=0.380 Sum_probs=148.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+|++++||+-||||||+.+|+.+.|++-..||++ |++.|-+.+. +..++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~rik--------------------------- 59 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIK--------------------------- 59 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEE---------------------------
Confidence 468999999999999999999999999999999999 9999988775 55666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+||++|+++..+||++
T Consensus 60 ----------------------------------------------------------lqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 60 ----------------------------------------------------------LQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred ----------------------------------------------------------EEEeeccchHHHHHHHHHHhhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
.-|+++|||++|..||+.++.|+.+.....+.+..+.
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~V------------------------------------------- 118 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVV------------------------------------------- 118 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeE-------------------------------------------
Confidence 9999999999999999999999998776543222233
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
|.|||.|+||.+.|+|+.++++.+|+..|+.|
T Consensus 119 ------------------------------------------------FlLVGhKsDL~SqRqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 119 ------------------------------------------------FLLVGHKSDLQSQRQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred ------------------------------------------------EEEeccccchhhhccccHHHHHHHHHhcCceE
Confidence 33666666666678899999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
+|||||+|.||+|+|+.+.+.+...-+.
T Consensus 151 VETSak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 151 VETSAKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred EEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999877554443
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9.3e-34 Score=247.89 Aligned_cols=174 Identities=23% Similarity=0.398 Sum_probs=148.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
++..+||+++|++|||||||++||+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~--------------------------- 54 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 54 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEE---------------------------
Confidence 45689999999999999999999999999999999999777777877777777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|++.|..+++.++++
T Consensus 55 ----------------------------------------------------------l~iwDtaG~e~~~~~~~~~~~~ 76 (182)
T cd04172 55 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 76 (182)
T ss_pred ----------------------------------------------------------EEEEECCCchhhHhhhhhhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.||+++ ..|++++.+.. +.+|++|||||+||.+....
T Consensus 77 ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~-------------------------- 127 (182)
T cd04172 77 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDLTT-------------------------- 127 (182)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhhcChhh--------------------------
Confidence 9999999999999999998 78999998865 57999999999999642000
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
..++.. ...+.|+.++++.+|+..++
T Consensus 128 -----------------------~~~~~~------------------------------~~~~~v~~~~~~~~a~~~~~~ 154 (182)
T cd04172 128 -----------------------LVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 154 (182)
T ss_pred -----------------------HHHHHh------------------------------cCCCCCCHHHHHHHHHHcCCC
Confidence 000000 01234678899999999996
Q ss_pred eEEEeccCCCcC-HHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~n-v~elf~~i~~~ 347 (373)
+|+||||++|.| |+++|+.+++.
T Consensus 155 ~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 155 TYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEEECCcCCCCCCHHHHHHHHHHH
Confidence 999999999999 99999999984
No 11
>KOG0087|consensus
Probab=100.00 E-value=4.7e-34 Score=243.87 Aligned_cols=162 Identities=30% Similarity=0.466 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.-|||+++|++|||||-|+.||+.+.|..+..+|++ ++.++++.+++..++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vk---------------------------- 64 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVK---------------------------- 64 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEE----------------------------
Confidence 478999999999999999999999999999999999 999999999999999
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.+||||+||++|+++...||++|
T Consensus 65 ---------------------------------------------------------aqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 65 ---------------------------------------------------------AQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ---------------------------------------------------------Eeeecccchhhhccccchhhccc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
.|+++|||++...+|+++..|+.+++.... +++++++||||+||..
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad--~nivimLvGNK~DL~~-------------------------------- 133 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLNH-------------------------------- 133 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCC--CCeEEEEeecchhhhh--------------------------------
Confidence 999999999999999999999999998753 5677777777777653
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.|.|..++++.+|+..+..|+
T Consensus 134 -----------------------------------------------------------lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 134 -----------------------------------------------------------LRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred -----------------------------------------------------------ccccchhhhHhHHHhcCceEE
Confidence 345667789999999999999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
|+||.++.||+++|+.++...
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EecccccccHHHHHHHHHHHH
Confidence 999999999999999888743
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=6.8e-33 Score=243.70 Aligned_cols=175 Identities=21% Similarity=0.324 Sum_probs=148.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|+.|||||||+.+|..+.|...+.++++ ++..+.+.+++..+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~---------------------------- 56 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVK---------------------------- 56 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888876 666677777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 57 ---------------------------------------------------------l~iwDt~G~~~~~~l~~~~~~~a 79 (189)
T cd04121 57 ---------------------------------------------------------LQLWDTSGQGRFCTIFRSYSRGA 79 (189)
T ss_pred ---------------------------------------------------------EEEEeCCCcHHHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.||+++..|++++.+.. +.+|++|||||+|+..
T Consensus 80 d~illVfD~t~~~Sf~~~~~w~~~i~~~~---~~~piilVGNK~DL~~-------------------------------- 124 (189)
T cd04121 80 QGIILVYDITNRWSFDGIDRWIKEIDEHA---PGVPKILVGNRLHLAF-------------------------------- 124 (189)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccchh--------------------------------
Confidence 99999999999999999999999997654 5788888888888853
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++|+
T Consensus 125 -----------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 125 -----------------------------------------------------------KRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred -----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEE
Confidence 223455678888888999999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccCCCcccccc
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKR 362 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~ 362 (373)
||||++|.||+++|+.+++.+.....+.+....++
T Consensus 146 e~SAk~g~~V~~~F~~l~~~i~~~~~~~~~~~~~~ 180 (189)
T cd04121 146 EVSPLCNFNITESFTELARIVLMRHGRPPQSPPQN 180 (189)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 99999999999999999986655444444444443
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.9e-33 Score=241.97 Aligned_cols=170 Identities=27% Similarity=0.443 Sum_probs=145.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.||+.+.|..++.||+++.+.+.+.+++..+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~------------------------------- 50 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVN------------------------------- 50 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEE-------------------------------
Confidence 6999999999999999999999999999999999777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~a~~~ 76 (176)
T cd04133 51 ------------------------------------------------------LGLWDTAGQEDYNRLRPLSYRGADVF 76 (176)
T ss_pred ------------------------------------------------------EEEEECCCCccccccchhhcCCCcEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.||+++ ..|+.++.... +++|++|||||+|+.+. +....
T Consensus 77 ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~-~~~~~--------------------------- 125 (176)
T cd04133 77 VLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRDD-KQYLA--------------------------- 125 (176)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhccC-hhhhh---------------------------
Confidence 999999999999998 68999998764 57999999999999641 11000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
+....+.|+.++++.+++..++ +|+|
T Consensus 126 -----------------------------------------------------~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 126 -----------------------------------------------------DHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred -----------------------------------------------------hccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 0011234567788999999998 6999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
|||++|.||+++|+.+++.+.
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCcccCHHHHHHHHHHHHh
Confidence 999999999999999999653
No 14
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.7e-33 Score=242.79 Aligned_cols=171 Identities=23% Similarity=0.390 Sum_probs=145.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
++||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIE------------------------------ 50 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999998777777777777666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..+++.+++++++
T Consensus 51 -------------------------------------------------------l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (178)
T cd04131 51 -------------------------------------------------------LSLWDTSGSPYYDNVRPLCYPDSDA 75 (178)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhcchhhcCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++ ..|+.++.+.. +.+|+++||||+||.++..
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~~~~~------------------------------ 122 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLRTDLS------------------------------ 122 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhhcChh------------------------------
Confidence 9999999999999996 78999998875 5799999999999964100
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
.. .++.. ...+.|+.++++.+|+..++ +|+
T Consensus 123 ---------------~~----~~~~~------------------------------~~~~~v~~~e~~~~a~~~~~~~~~ 153 (178)
T cd04131 123 ---------------TL----MELSH------------------------------QRQAPVSYEQGCAIAKQLGAEIYL 153 (178)
T ss_pred ---------------HH----HHHHh------------------------------cCCCCCCHHHHHHHHHHhCCCEEE
Confidence 00 00100 01234678899999999997 899
Q ss_pred EeccCCCcC-HHHHHHHHHHH
Q psy16673 328 ECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~n-v~elf~~i~~~ 347 (373)
||||++|+| |+++|..+++.
T Consensus 154 E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 154 ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred ECccCcCCcCHHHHHHHHHHH
Confidence 999999995 99999999995
No 15
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-32 Score=246.94 Aligned_cols=173 Identities=23% Similarity=0.349 Sum_probs=146.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
..+||+++|++|||||||+++|+.+.|...|.||+++.+++.+.+++..+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~----------------------------- 62 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVE----------------------------- 62 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEE-----------------------------
Confidence 478999999999999999999999999999999999777777777777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|++.|..+++.++++++
T Consensus 63 --------------------------------------------------------l~iwDTaG~e~~~~~~~~~~~~ad 86 (232)
T cd04174 63 --------------------------------------------------------LSLWDTSGSPYYDNVRPLCYSDSD 86 (232)
T ss_pred --------------------------------------------------------EEEEeCCCchhhHHHHHHHcCCCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 169 AFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++|||++++.||+++ ..|+.++.... +.+|+++||||+|+..+....
T Consensus 87 ~vIlVyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~~~~~~~--------------------------- 136 (232)
T cd04174 87 AVLLCFDISRPETVDSALKKWKAEIMDYC---PSTRILLIGCKTDLRTDLSTL--------------------------- 136 (232)
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccchh---------------------------
Confidence 99999999999999985 78999998765 578999999999986410000
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QL 326 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~ 326 (373)
.++ .+ ...+.|+.++++.+|+.+++ +|
T Consensus 137 ----------------------~~l--------------------------~~----~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 137 ----------------------MEL--------------------------SN----QKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred ----------------------hhh--------------------------cc----ccCCcCCHHHHHHHHHHcCCCEE
Confidence 000 00 01245678899999999999 69
Q ss_pred EEeccCCCc-CHHHHHHHHHHHh
Q psy16673 327 LECSAKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~-nv~elf~~i~~~~ 348 (373)
|||||++|. ||+++|+.+++..
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHH
Confidence 999999998 8999999999865
No 16
>KOG0088|consensus
Probab=100.00 E-value=3.2e-33 Score=227.08 Aligned_cols=162 Identities=28% Similarity=0.387 Sum_probs=147.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.-.|||+++|...||||||+-||+.+.|.....+|+. .|.++.+++.+....
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~--------------------------- 63 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRAD--------------------------- 63 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceee---------------------------
Confidence 4479999999999999999999999999999999998 788999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.||||+||++|+++-+.||++
T Consensus 64 ----------------------------------------------------------L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 64 ----------------------------------------------------------LHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred ----------------------------------------------------------eeeeeccchHhhhccCceEEeC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
.+|+++|||+++++||+.++.|..+++.+.+ ..+.
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlG--nei~------------------------------------------- 120 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELRTMLG--NEIE------------------------------------------- 120 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHHHHhC--CeeE-------------------------------------------
Confidence 9999999999999999999999999998863 1222
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+++||||.||+..|+|+..+++.+|+.-|+.|
T Consensus 121 ------------------------------------------------l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y 152 (218)
T KOG0088|consen 121 ------------------------------------------------LLIVGNKIDLEEERQVTRQEAEAYAESVGALY 152 (218)
T ss_pred ------------------------------------------------EEEecCcccHHHhhhhhHHHHHHHHHhhchhh
Confidence 33677777777788999999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHH
Q psy16673 327 LECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+|||.|.||.++|+.+...
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAK 173 (218)
T ss_pred eecccccccCHHHHHHHHHHH
Confidence 999999999999999988764
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.4e-32 Score=238.74 Aligned_cols=160 Identities=26% Similarity=0.458 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.|+++|+.|||||||++||+.+.|...+.+|++ +++.+.+.+++..+.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~------------------------------ 50 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIR------------------------------ 50 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEE------------------------------
Confidence 3699999999999999999999999999999988 777778888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..|++++|+
T Consensus 51 -------------------------------------------------------l~iwDtaGqe~~~~l~~~y~~~ad~ 75 (202)
T cd04120 51 -------------------------------------------------------LQIWDTAGQERFNSITSAYYRSAKG 75 (202)
T ss_pred -------------------------------------------------------EEEEeCCCchhhHHHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+.+..|++.+.... ..++|+++||||+|+..
T Consensus 76 iIlVfDvtd~~Sf~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~---------------------------------- 119 (202)
T cd04120 76 IILVYDITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCET---------------------------------- 119 (202)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccc----------------------------------
Confidence 999999999999999999999887653 25688888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-CCeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~~~~~E 328 (373)
.+.++.++++.+++.. +++|+|
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~~e 142 (202)
T cd04120 120 ---------------------------------------------------------DREISRQQGEKFAQQITGMRFCE 142 (202)
T ss_pred ---------------------------------------------------------ccccCHHHHHHHHHhcCCCEEEE
Confidence 1223445566677664 789999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++..
T Consensus 143 tSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 143 ASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999854
No 18
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=9.4e-32 Score=237.32 Aligned_cols=172 Identities=25% Similarity=0.478 Sum_probs=144.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||++||+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVS------------------------------ 52 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEE------------------------------
Confidence 48999999999999999999999999999999999777766677776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..+++.+++++|+
T Consensus 53 -------------------------------------------------------l~i~Dt~G~e~~~~l~~~~~~~a~~ 77 (191)
T cd01875 53 -------------------------------------------------------LNLWDTAGQEEYDRLRTLSYPQTNV 77 (191)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhhhhhhccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.||+++. .|+..+.... +++|++|||||+||.+. +..
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~-~~~---------------------------- 125 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLRND-ADT---------------------------- 125 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhhcC-hhh----------------------------
Confidence 99999999999999997 5988887654 57999999999999641 100
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~ 327 (373)
.+.+.. ...+.++.++++.+++..+ ++|+
T Consensus 126 --------------------~~~~~~------------------------------~~~~~v~~~~~~~~a~~~~~~~~~ 155 (191)
T cd01875 126 --------------------LKKLKE------------------------------QGQAPITPQQGGALAKQIHAVKYL 155 (191)
T ss_pred --------------------HHHHhh------------------------------ccCCCCCHHHHHHHHHHcCCcEEE
Confidence 000100 0113346678899999888 6999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 156 e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 156 ECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred EeCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999865
No 19
>KOG0093|consensus
Probab=99.98 E-value=4.2e-32 Score=218.04 Aligned_cols=161 Identities=26% Similarity=0.417 Sum_probs=141.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+|++|+|+..||||||+.||+.+.|...+.+|++ |+-.+++-.+...++
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRik---------------------------- 71 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIK---------------------------- 71 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEE----------------------------
Confidence 367999999999999999999999999999999999 887787777777777
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|+|+|+.+...||+++
T Consensus 72 ---------------------------------------------------------lQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 72 ---------------------------------------------------------LQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred ---------------------------------------------------------EEEEecccchhhhHHHHHHhhcc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+|+|++||+++.+||..++.|...+..++- .++|++
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIktysw--~naqvi------------------------------------------ 130 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIKTYSW--DNAQVI------------------------------------------ 130 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHheeeec--cCceEE------------------------------------------
Confidence 999999999999999999999988775531 233333
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
|||||||++++|.++.+.++.+++.+|..||
T Consensus 131 -------------------------------------------------lvgnKCDmd~eRvis~e~g~~l~~~LGfefF 161 (193)
T KOG0093|consen 131 -------------------------------------------------LVGNKCDMDSERVISHERGRQLADQLGFEFF 161 (193)
T ss_pred -------------------------------------------------EEecccCCccceeeeHHHHHHHHHHhChHHh
Confidence 6666666666777788889999999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
|+|||.|.||+++|+.++..
T Consensus 162 EtSaK~NinVk~~Fe~lv~~ 181 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDI 181 (193)
T ss_pred hhcccccccHHHHHHHHHHH
Confidence 99999999999999999874
No 20
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.98 E-value=8.8e-32 Score=234.21 Aligned_cols=172 Identities=24% Similarity=0.427 Sum_probs=144.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~------------------------------ 50 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT------------------------------ 50 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEE------------------------------
Confidence 37999999999999999999999999999999999777766777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (175)
T cd01874 51 -------------------------------------------------------LGLFDTAGQEDYDRLRPLSYPQTDV 75 (175)
T ss_pred -------------------------------------------------------EEEEECCCccchhhhhhhhcccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+. ..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~~-~~----------------------------- 122 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRDD-PS----------------------------- 122 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhC-hh-----------------------------
Confidence 99999999999999997 5998887754 57999999999998641 00
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~ 327 (373)
. ..+......+.|+.++++.+++..+ ++|+
T Consensus 123 -------------------~------------------------------~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~ 153 (175)
T cd01874 123 -------------------T------------------------------IEKLAKNKQKPITPETGEKLARDLKAVKYV 153 (175)
T ss_pred -------------------h------------------------------HHHhhhccCCCcCHHHHHHHHHHhCCcEEE
Confidence 0 0001111235567888999998887 7999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++++
T Consensus 154 e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 154 ECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EecCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999854
No 21
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=3.2e-31 Score=238.22 Aligned_cols=173 Identities=23% Similarity=0.400 Sum_probs=143.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
++||+|+|++|||||||+++|+.+.|+..|.||+.+.+...+.+++..+.
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~------------------------------ 50 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIE------------------------------ 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999999877777777777766
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..+++.+|+++|+
T Consensus 51 -------------------------------------------------------L~iwDt~G~e~~~~l~~~~~~~~d~ 75 (222)
T cd04173 51 -------------------------------------------------------LNMWDTSGSSYYDNVRPLAYPDSDA 75 (222)
T ss_pred -------------------------------------------------------EEEEeCCCcHHHHHHhHHhccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+++. .|..++.... +++|++|||||+|+..+...
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~~~~~----------------------------- 123 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRTDLAT----------------------------- 123 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECcccccchhh-----------------------------
Confidence 99999999999999995 5887776554 68999999999999752000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
...+... . ...|+.++++.+|+..|+ +|+
T Consensus 124 --------------------~~~~~~~---~---------------------------~~pIs~e~g~~~ak~~~~~~y~ 153 (222)
T cd04173 124 --------------------LRELSKQ---R---------------------------LIPVTHEQGTVLAKQVGAVSYV 153 (222)
T ss_pred --------------------hhhhhhc---c---------------------------CCccCHHHHHHHHHHcCCCEEE
Confidence 0000000 0 112467789999999995 999
Q ss_pred EeccCCCcC-HHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYN-IKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~n-v~elf~~i~~~~~ 349 (373)
||||++|.| |+++|+.+++.+.
T Consensus 154 E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 154 ECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred EcCCCcCCcCHHHHHHHHHHHHH
Confidence 999999995 9999999999653
No 22
>KOG0095|consensus
Probab=99.98 E-value=7.7e-32 Score=217.02 Aligned_cols=168 Identities=27% Similarity=0.450 Sum_probs=144.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
--|||++||..|||||||+.||+++-||+...+|++ |+..+++.+++..++
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekik---------------------------- 57 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIK---------------------------- 57 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEE----------------------------
Confidence 368999999999999999999999999999999999 999999999999999
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
++||||+|+++|+++.++||+.+
T Consensus 58 ---------------------------------------------------------lqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 58 ---------------------------------------------------------LQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred ---------------------------------------------------------EEEeeccchHHHHHHHHHHhhhc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++++||++...+|..+.+|+.++..+.. ..+--+
T Consensus 81 halilvydiscqpsfdclpewlreie~yan--~kvlki------------------------------------------ 116 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKI------------------------------------------ 116 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEE------------------------------------------
Confidence 999999999999999999999999998862 233334
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+||||.|+.+.|.|....++.+++....-|+
T Consensus 117 -------------------------------------------------lvgnk~d~~drrevp~qigeefs~~qdmyfl 147 (213)
T KOG0095|consen 117 -------------------------------------------------LVGNKIDLADRREVPQQIGEEFSEAQDMYFL 147 (213)
T ss_pred -------------------------------------------------eeccccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 4555555555566666777888888778899
Q ss_pred EeccCCCcCHHHHHHHHH-HHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFL-TLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~-~~~~~~~~~ 354 (373)
|+||+...||+.+|..++ ++....+.+
T Consensus 148 etsakea~nve~lf~~~a~rli~~ar~~ 175 (213)
T KOG0095|consen 148 ETSAKEADNVEKLFLDLACRLISEARQN 175 (213)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998876 443333333
No 23
>KOG0086|consensus
Probab=99.97 E-value=1.4e-31 Score=216.38 Aligned_cols=161 Identities=29% Similarity=0.469 Sum_probs=144.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.-+|++++|+.|.|||||+++|+.+.|.+....|++ ++-.|.+++++..++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vK---------------------------- 59 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVK---------------------------- 59 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEE----------------------------
Confidence 468999999999999999999999999999999999 999999999999888
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
++||||+||++|+.....||+++
T Consensus 60 ---------------------------------------------------------LQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 60 ---------------------------------------------------------LQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred ---------------------------------------------------------EEEeecccHHHHHHHHHHHhccc
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
-|.++|||++++++|+.+..|+..++.+.. +.+.++++|||.||
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs--~nIvviL~GnKkDL---------------------------------- 126 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLAS--PNIVVILCGNKKDL---------------------------------- 126 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCC--CcEEEEEeCChhhc----------------------------------
Confidence 999999999999999999999999987753 45555555555555
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..|+|+-.++..+++...+.|.
T Consensus 127 ---------------------------------------------------------~~~R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 127 ---------------------------------------------------------DPEREVTFLEASRFAQENELMFL 149 (214)
T ss_pred ---------------------------------------------------------ChhhhhhHHHHHhhhcccceeee
Confidence 44567777888889999999999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
|+||+||+||+|.|-..++.
T Consensus 150 ETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 150 ETSALTGENVEEAFLKCART 169 (214)
T ss_pred eecccccccHHHHHHHHHHH
Confidence 99999999999999888874
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.97 E-value=8.1e-31 Score=227.50 Aligned_cols=162 Identities=29% Similarity=0.445 Sum_probs=139.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|+..+.||+++.+.+.+.+++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 51 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPAL------------------------------ 51 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999999999998777777777776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..++.++|+
T Consensus 52 -------------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~~d~ 76 (172)
T cd04141 52 -------------------------------------------------------LDILDTAGQAEFTAMRDQYMRCGEG 76 (172)
T ss_pred -------------------------------------------------------EEEEeCCCchhhHHHhHHHhhcCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.||+.+..|+..+.+... .+++|+++||||+|+.+
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~---------------------------------- 121 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLES---------------------------------- 121 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhh----------------------------------
Confidence 9999999999999999999888876532 24678888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.++.++++.+++..+++|+||
T Consensus 122 ---------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 122 ---------------------------------------------------------QRQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred ---------------------------------------------------------cCccCHHHHHHHHHHhCCEEEEE
Confidence 12234456677788889999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.+++..
T Consensus 145 Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 145 SAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999853
No 25
>KOG0393|consensus
Probab=99.97 E-value=2e-31 Score=229.87 Aligned_cols=178 Identities=29% Similarity=0.507 Sum_probs=155.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+|++|||+++||||+|+..|..+.|+..|.||+.|.|...+.++ +..+.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~---------------------------- 54 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVE---------------------------- 54 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEE----------------------------
Confidence 4689999999999999999999999999999999999999999995 88888
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+||++|..+++..|.++
T Consensus 55 ---------------------------------------------------------L~LwDTAGqedYDrlRplsY~~t 77 (198)
T KOG0393|consen 55 ---------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQT 77 (198)
T ss_pred ---------------------------------------------------------EeeeecCCCcccccccccCCCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|.+++||++.++.||+++.. |+.+++.++ +.+|+++||+|.||+++.
T Consensus 78 dvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr~d~----------------------------- 125 (198)
T KOG0393|consen 78 DVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLRDDP----------------------------- 125 (198)
T ss_pred CEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhhhCH-----------------------------
Confidence 99999999999999999875 999999988 899999999999998531
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-Ce
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQ 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~ 325 (373)
...+.+.+. ....|+.++++.+|+..| +.
T Consensus 126 --------------------~~~~~l~~~------------------------------~~~~Vt~~~g~~lA~~iga~~ 155 (198)
T KOG0393|consen 126 --------------------STLEKLQRQ------------------------------GLEPVTYEQGLELAKEIGAVK 155 (198)
T ss_pred --------------------HHHHHHHhc------------------------------cCCcccHHHHHHHHHHhCcce
Confidence 011122221 112357889999999999 57
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|+||||++..|++++|+..++.+...++
T Consensus 156 y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 156 YLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred eeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999998765554
No 26
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=247.50 Aligned_cols=301 Identities=16% Similarity=0.073 Sum_probs=213.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe------------ccCCccchhh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA------------GNKSDMTSHH 76 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 76 (373)
..|+|||+||||||||+||++ ....+.+.|+ .||+..++...+.+..|.++ +...+.+++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~-----g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT-----GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh-----CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHH
Confidence 479999999999999999999 7889999988 78999999999999999888 2234456777
Q ss_pred hcccccceeeeeeec---cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccc
Q psy16673 77 RAVHLEDVSEWLYCE---LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGD 153 (373)
Q Consensus 77 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~ 153 (373)
.++.+||+++|++|. .+..++.+..+.+..++|++||+||+|.....
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e------------------------------ 128 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE------------------------------ 128 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh------------------------------
Confidence 899999999999995 34557777777778889999999999965221
Q ss_pred cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHH--HHh-ccC---CCccEE----------------------
Q psy16673 154 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR--EQR-QDF---QEIPIV---------------------- 205 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~--~~~-~~~---~~~pi~---------------------- 205 (373)
.....||+-+-+=++..+..+...+..+.+++-... ... ... ..+.++
T Consensus 129 ----~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~ 204 (444)
T COG1160 129 ----ELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERV 204 (444)
T ss_pred ----hhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceE
Confidence 112222333333344444444444444433222221 000 000 123344
Q ss_pred ----EecccccccccccccccccceeeeccCCCCCc----------hhhh-hccccccEEEEEEecCCccchhhHHHHHH
Q psy16673 206 ----VAGNKSDMTSHHRAVHLEDVDILDTCGDLQFP----------AMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFE 270 (373)
Q Consensus 206 ----ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~----------~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~ 270 (373)
+.||..|..+.........+.+.||||..+-. ..+. .++..++.+++|.|++.+.+-++..-.--
T Consensus 205 Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~ 284 (444)
T COG1160 205 IVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGL 284 (444)
T ss_pred EecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHH
Confidence 44556666555566666778999999965443 3333 47889999999999999998887754222
Q ss_pred HHHhhccCCCCCchhhccccccceeeeeccccccccchhhh-----hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 271 EIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-----CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 271 ~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~-----~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
.. +.++++++|.||||+...+..+ .+....+.+...+|.+.+||++|.++.++|+.+.
T Consensus 285 i~-----------------~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~ 347 (444)
T COG1160 285 IE-----------------EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIK 347 (444)
T ss_pred HH-----------------HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHH
Confidence 22 2255677999999986653222 2333444455568999999999999999999999
Q ss_pred HHhhhhccCCCccccccccccc
Q psy16673 346 TLSQILTTNGDENSLKRRSSAY 367 (373)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~s~~ 367 (373)
+.+....++..++.+++....+
T Consensus 348 ~~~~~~~~ri~Ts~LN~~l~~a 369 (444)
T COG1160 348 EIYECATRRISTSLLNRVLEDA 369 (444)
T ss_pred HHHHHhccccCHHHHHHHHHHH
Confidence 9999999999999988865544
No 27
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.9e-30 Score=225.63 Aligned_cols=170 Identities=26% Similarity=0.502 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.||+.+.|+..+.||+.+.+...+.+++..+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN------------------------------- 50 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEE-------------------------------
Confidence 6999999999999999999999999999999998887777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+|||+|++.|..++..+++++|++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (174)
T cd01871 51 ------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQTDVF 76 (174)
T ss_pred ------------------------------------------------------EEEEECCCchhhhhhhhhhcCCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +++|+++||||+|+.+. +. .
T Consensus 77 ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~~~-~~-~---------------------------- 123 (174)
T cd01871 77 LICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD-T---------------------------- 123 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhccC-hh-h----------------------------
Confidence 9999999999999996 5988887654 57999999999999641 10 0
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E 328 (373)
.+ .+.. ...+.|+.++++.+++..+ ++|+|
T Consensus 124 ------------~~-------~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e 154 (174)
T cd01871 124 ------------IE-------KLKE------------------------------KKLTPITYPQGLAMAKEIGAVKYLE 154 (174)
T ss_pred ------------HH-------HHhh------------------------------ccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 00 0000 1123467788899999888 49999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.||+++|+.+++.
T Consensus 155 ~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 155 CSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ecccccCCHHHHHHHHHHh
Confidence 9999999999999999873
No 28
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3.5e-30 Score=220.94 Aligned_cols=159 Identities=26% Similarity=0.446 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.+.+.+|++ +++.+.+.+++..+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVR------------------------------ 50 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999988899988 555566666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..+...+++++|+
T Consensus 51 -------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~ 75 (161)
T cd04117 51 -------------------------------------------------------IQIWDTAGQERYQTITKQYYRRAQG 75 (161)
T ss_pred -------------------------------------------------------EEEEeCCCcHhHHhhHHHHhcCCcE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|++.+.... ..++|+++||||.|+..
T Consensus 76 ~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~---------------------------------- 119 (161)
T cd04117 76 IFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQ---------------------------------- 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc----------------------------------
Confidence 999999999999999999999887653 24678888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.++.++++.+++.++++|+||
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~ 142 (161)
T cd04117 120 ---------------------------------------------------------KRQVGDEQGNKLAKEYGMDFFET 142 (161)
T ss_pred ---------------------------------------------------------ccCCCHHHHHHHHHHcCCEEEEE
Confidence 22334556777888888999999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.|+++
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999874
No 29
>KOG0083|consensus
Probab=99.97 E-value=6.9e-32 Score=213.38 Aligned_cols=159 Identities=25% Similarity=0.382 Sum_probs=140.6
Q ss_pred EEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 14 VILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 14 ~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
+++|++++|||||+.||-.+.|. ....+|++ |+..+-+.+++..++
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvk-------------------------------- 48 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVK-------------------------------- 48 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEE--------------------------------
Confidence 47899999999999999988886 45688888 888888888888888
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++|||+||++|++....||+++|+.+
T Consensus 49 -----------------------------------------------------lqiwdtagqerfrsvt~ayyrda~all 75 (192)
T KOG0083|consen 49 -----------------------------------------------------LQIWDTAGQERFRSVTHAYYRDADALL 75 (192)
T ss_pred -----------------------------------------------------EEEeeccchHHHhhhhHhhhcccceee
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEE
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i 251 (373)
++||+.++.||++++.|+.++.++.. ..+.
T Consensus 76 llydiankasfdn~~~wlsei~ey~k--~~v~------------------------------------------------ 105 (192)
T KOG0083|consen 76 LLYDIANKASFDNCQAWLSEIHEYAK--EAVA------------------------------------------------ 105 (192)
T ss_pred eeeecccchhHHHHHHHHHHHHHHHH--hhHh------------------------------------------------
Confidence 99999999999999999999998852 1111
Q ss_pred EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEecc
Q psy16673 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331 (373)
Q Consensus 252 ~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SA 331 (373)
+.++|||+|+...|.|..++++.+|+..++||+|+||
T Consensus 106 -------------------------------------------l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsa 142 (192)
T KOG0083|consen 106 -------------------------------------------LMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSA 142 (192)
T ss_pred -------------------------------------------HhhhccccccchhhccccchHHHHHHHHCCCceeccc
Confidence 2277777777778888899999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHhhh
Q psy16673 332 KDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 332 ktg~nv~elf~~i~~~~~~ 350 (373)
|||.||+..|..|++..+.
T Consensus 143 ktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 143 KTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred cccccHhHHHHHHHHHHHH
Confidence 9999999999999985433
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=6.6e-30 Score=220.13 Aligned_cols=161 Identities=26% Similarity=0.425 Sum_probs=136.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIK----------------------------- 52 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999988888887 555566666666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.|..++..++++++
T Consensus 53 --------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~ 76 (166)
T cd04122 53 --------------------------------------------------------LQIWDTAGQERFRAVTRSYYRGAA 76 (166)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhcCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++||||+|+..
T Consensus 77 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~--------------------------------- 121 (166)
T cd04122 77 GALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA--------------------------------- 121 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc---------------------------------
Confidence 99999999999999999999998876532 5678888888888764
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.++.++++.+++..+++|+|
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd04122 122 ----------------------------------------------------------QRDVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred ----------------------------------------------------------ccCcCHHHHHHHHHHcCCEEEE
Confidence 1222344556677777899999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|..+++.+
T Consensus 144 ~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 144 CSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999753
No 31
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=223.79 Aligned_cols=164 Identities=32% Similarity=0.529 Sum_probs=139.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.||+++.+.+.+.+++..+.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 54 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCL---------------------------- 54 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEE----------------------------
Confidence 4579999999999999999999999999988999998777777777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|+++|..++..+++++
T Consensus 55 ---------------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~~ 77 (189)
T PTZ00369 55 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 77 (189)
T ss_pred ---------------------------------------------------------EEEEeCCCCccchhhHHHHhhcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+.+... .+++|++++|||.|+.+.
T Consensus 78 d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~------------------------------- 125 (189)
T PTZ00369 78 QGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE------------------------------- 125 (189)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc-------------------------------
Confidence 999999999999999999999998876642 257888889999887531
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..+++..+++|+
T Consensus 126 ------------------------------------------------------------~~i~~~~~~~~~~~~~~~~~ 145 (189)
T PTZ00369 126 ------------------------------------------------------------RQVSTGEGQELAKSFGIPFL 145 (189)
T ss_pred ------------------------------------------------------------cccCHHHHHHHHHHhCCEEE
Confidence 11223344555666678999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++..
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
No 32
>KOG0395|consensus
Probab=99.97 E-value=4.3e-30 Score=226.19 Aligned_cols=167 Identities=34% Similarity=0.519 Sum_probs=147.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
..+||+++|.+|||||+|..||+++.|.+.|.||++|.|.+.+.+++..+.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~----------------------------- 52 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCM----------------------------- 52 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEE-----------------------------
Confidence 357999999999999999999999999999999999999999999988888
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.|+||+|+++|..++..++.+++
T Consensus 53 --------------------------------------------------------l~ilDt~g~~~~~~~~~~~~~~~~ 76 (196)
T KOG0395|consen 53 --------------------------------------------------------LEILDTAGQEEFSAMRDLYIRNGD 76 (196)
T ss_pred --------------------------------------------------------EEEEcCCCcccChHHHHHhhccCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
|+++||+++++.||+.+..+++.+.+..+ ...+|+++||||+|+.
T Consensus 77 gF~lVysitd~~SF~~~~~l~~~I~r~~~-~~~~PivlVGNK~Dl~---------------------------------- 121 (196)
T KOG0395|consen 77 GFLLVYSITDRSSFEEAKQLREQILRVKG-RDDVPIILVGNKCDLE---------------------------------- 121 (196)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCCEEEEEEcccch----------------------------------
Confidence 99999999999999999999998855432 2345666666666654
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
..|.|+.++++.+|..++|+|+|
T Consensus 122 ---------------------------------------------------------~~R~V~~eeg~~la~~~~~~f~E 144 (196)
T KOG0395|consen 122 ---------------------------------------------------------RERQVSEEEGKALARSWGCAFIE 144 (196)
T ss_pred ---------------------------------------------------------hccccCHHHHHHHHHhcCCcEEE
Confidence 44677888999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|||+.+.||+++|..+++......
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREIRLPR 168 (196)
T ss_pred eeccCCcCHHHHHHHHHHHHHhhh
Confidence 999999999999999999765533
No 33
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=9.8e-30 Score=217.74 Aligned_cols=119 Identities=36% Similarity=0.643 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.||+.+.+.+.+.+++..+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCM------------------------------- 50 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988899988777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (163)
T cd04136 51 ------------------------------------------------------LEILDTAGTEQFTAMRDLYIKNGQGF 76 (163)
T ss_pred ------------------------------------------------------EEEEECCCccccchHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|++.+.+... ...+|++++|||+|+.+
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 77 VLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 999999999999999999999887642 25788889999998853
No 34
>KOG0081|consensus
Probab=99.97 E-value=4.2e-31 Score=214.93 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=143.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|.+.+|++||||||++.||+.+.|..+..+|++ |+..+.+.++...-++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g---------------------------- 60 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGG---------------------------- 60 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCC----------------------------
Confidence 46889999999999999999999999999999999 8877777664332110
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
.-....|.+++|||+|||+|+++...++++|.
T Consensus 61 ------------------------------------------------~gr~~rihLQlWDTAGQERFRSLTTAFfRDAM 92 (219)
T KOG0081|consen 61 ------------------------------------------------GGRGQRIHLQLWDTAGQERFRSLTTAFFRDAM 92 (219)
T ss_pred ------------------------------------------------CCcceEEEEeeeccccHHHHHHHHHHHHHhhc
Confidence 00112344999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++++||+++..||-++..|+.++..... ..++-
T Consensus 93 GFlLiFDlT~eqSFLnvrnWlSQL~~hAY-cE~PD--------------------------------------------- 126 (219)
T KOG0081|consen 93 GFLLIFDLTSEQSFLNVRNWLSQLQTHAY-CENPD--------------------------------------------- 126 (219)
T ss_pred cceEEEeccchHHHHHHHHHHHHHHHhhc-cCCCC---------------------------------------------
Confidence 99999999999999999999998875431 12222
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
++++|||+||++.|.|+..++..+|.+.|+||||
T Consensus 127 ----------------------------------------------ivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 127 ----------------------------------------------IVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred ----------------------------------------------EEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 4466777777777888999999999999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~ 350 (373)
+||.||.||++..+.++.++..
T Consensus 161 TSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 35
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=1.7e-29 Score=216.29 Aligned_cols=159 Identities=29% Similarity=0.566 Sum_probs=143.4
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||+++|++|||||||+++|.++.|++.+.+|++ +.+.+.+.+++..+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------- 49 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVN------------------------------- 49 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEE-------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccc-------------------------------
Confidence 799999999999999999999999999999995 888888888888887
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------l~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (162)
T PF00071_consen 50 ------------------------------------------------------LEIWDTSGQERFDSLRDIFYRNSDAI 75 (162)
T ss_dssp ------------------------------------------------------EEEEEETTSGGGHHHHHHHHTTESEE
T ss_pred ------------------------------------------------------cccccccccccccccccccccccccc
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.||+.+..|+..+..... ..+|++++|||+|+.+
T Consensus 76 ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~----------------------------------- 118 (162)
T PF00071_consen 76 IIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD----------------------------------- 118 (162)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG-----------------------------------
T ss_pred ccccccccccccccccccccccccccc--ccccceeeeccccccc-----------------------------------
Confidence 999999999999999999999998863 3688888888888763
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.++.++++.+++.++++|+|||
T Consensus 119 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 142 (162)
T PF00071_consen 119 --------------------------------------------------------EREVSVEEAQEFAKELGVPYFEVS 142 (162)
T ss_dssp --------------------------------------------------------GSSSCHHHHHHHHHHTTSEEEEEB
T ss_pred --------------------------------------------------------cccchhhHHHHHHHHhCCEEEEEE
Confidence 233456678889999999999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.||.++|..+++.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999864
No 36
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.7e-29 Score=222.77 Aligned_cols=167 Identities=29% Similarity=0.500 Sum_probs=138.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCM-------------------------------- 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999988999998777666666666666
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++|||+|+++|..++..+++++|+++
T Consensus 49 -----------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~~i 75 (190)
T cd04144 49 -----------------------------------------------------LEVLDTAGQEEYTALRDQWIREGEGFI 75 (190)
T ss_pred -----------------------------------------------------EEEEECCCchhhHHHHHHHHHhCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
+|||++++.+|+.+..|+..+...... ...+|+++||||+|+..
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~----------------------------------- 120 (190)
T cd04144 76 LVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY----------------------------------- 120 (190)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc-----------------------------------
Confidence 999999999999999999988776421 24677777888887753
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.+...+++.++...+++|+|||
T Consensus 121 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 144 (190)
T cd04144 121 --------------------------------------------------------EREVSTEEGAALARRLGCEFIEAS 144 (190)
T ss_pred --------------------------------------------------------cCccCHHHHHHHHHHhCCEEEEec
Confidence 122233445666777789999999
Q ss_pred cCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 331 AKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~~~~~~~ 354 (373)
|++|.||+++|+.+++......+.
T Consensus 145 Ak~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 145 AKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999865443333
No 37
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=1.9e-29 Score=220.87 Aligned_cols=164 Identities=20% Similarity=0.387 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++||+++.|...+.||++ +++.+.+.+++..+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~------------------------------ 50 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEIT------------------------------ 50 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999999999998 677778888777777
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++++
T Consensus 51 -------------------------------------------------------l~iwDt~G~~~~~~~~~~~~~~a~~ 75 (182)
T cd04128 51 -------------------------------------------------------FSIWDLGGQREFINMLPLVCNDAVA 75 (182)
T ss_pred -------------------------------------------------------EEEEeCCCchhHHHhhHHHCcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+++..|++.+..... ..+| ++||||+|+..+. ...
T Consensus 76 iilv~D~t~~~s~~~i~~~~~~~~~~~~--~~~p-ilVgnK~Dl~~~~---~~~-------------------------- 123 (182)
T cd04128 76 ILFMFDLTRKSTLNSIKEWYRQARGFNK--TAIP-ILVGTKYDLFADL---PPE-------------------------- 123 (182)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCE-EEEEEchhccccc---cch--------------------------
Confidence 9999999999999999999999887642 3466 5789999986310 000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
..+. ..++++.+++..+++|+||
T Consensus 124 --------------------------------------------------------~~~~-~~~~~~~~a~~~~~~~~e~ 146 (182)
T cd04128 124 --------------------------------------------------------EQEE-ITKQARKYAKAMKAPLIFC 146 (182)
T ss_pred --------------------------------------------------------hhhh-hHHHHHHHHHHcCCEEEEE
Confidence 0000 1235667788888999999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|+.+++.+
T Consensus 147 SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 147 STSHSINVQKIFKIVLAKA 165 (182)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999754
No 38
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=8.6e-30 Score=225.20 Aligned_cols=126 Identities=20% Similarity=0.322 Sum_probs=97.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLE 223 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~ 223 (373)
+++|||+|++. .++..+++++|++++|||++++.||+++. .|++.+.... +.+|+++||||+||..........
T Consensus 68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~~~~~~~~~ 142 (195)
T cd01873 68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRYADLDEVNR 142 (195)
T ss_pred EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccccccchhhh
Confidence 99999999976 35677899999999999999999999997 5999887764 578999999999996410000000
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
. ..| +.+.
T Consensus 143 ---------------------------------------------------~----~~~---------------~~~~-- 150 (195)
T cd01873 143 ---------------------------------------------------A----RRP---------------LARP-- 150 (195)
T ss_pred ---------------------------------------------------c----ccc---------------cccc--
Confidence 0 000 0000
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
....+.|+.++++.+|+.+|++|+||||++|.||+++|+.++++
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 01235678889999999999999999999999999999999974
No 39
>KOG0097|consensus
Probab=99.97 E-value=8.3e-30 Score=203.56 Aligned_cols=163 Identities=25% Similarity=0.368 Sum_probs=145.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...||-+|+|+.|||||||+.+|+...|......|++ ++-+|.+.+.+..++
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkik--------------------------- 61 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK--------------------------- 61 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEE---------------------------
Confidence 3478999999999999999999999999999999999 888999999998888
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
++||||+|+++|+....+||++
T Consensus 62 ----------------------------------------------------------lqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 62 ----------------------------------------------------------LQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred ----------------------------------------------------------EEEeecccHHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+-+.+.|||++.+.+++.+..|+...+.... ++..
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltn--pnt~------------------------------------------- 118 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTV------------------------------------------- 118 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCC--CceE-------------------------------------------
Confidence 9999999999999999999999987665421 2222
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
++++|||.||+..|.|+.++++.+++..|..|
T Consensus 119 ------------------------------------------------i~lignkadle~qrdv~yeeak~faeengl~f 150 (215)
T KOG0097|consen 119 ------------------------------------------------IFLIGNKADLESQRDVTYEEAKEFAEENGLMF 150 (215)
T ss_pred ------------------------------------------------EEEecchhhhhhcccCcHHHHHHHHhhcCeEE
Confidence 34777777777788899999999999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+|||||.||++.|-+.++..
T Consensus 151 le~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 151 LEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred EEecccccCcHHHHHHHHHHHH
Confidence 9999999999999998888754
No 40
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.6e-29 Score=222.62 Aligned_cols=171 Identities=26% Similarity=0.430 Sum_probs=139.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|..+.|+..+.||+.+.+.+.+.+++..+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~-------------------------------- 49 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIE-------------------------------- 49 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEE--------------------------------
Confidence 899999999999999999999999999999998777666666665556
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|++.|..++..++.++++++
T Consensus 50 -----------------------------------------------------l~i~Dt~G~~~~~~l~~~~~~~a~~~i 76 (189)
T cd04134 50 -----------------------------------------------------LSLWDTAGQEEFDRLRSLSYADTDVIM 76 (189)
T ss_pred -----------------------------------------------------EEEEECCCChhccccccccccCCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 172 LVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
+|||++++.+|+.+. .|+..+.... +++|+++||||+|+... +....
T Consensus 77 lv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~-~~~~~---------------------------- 124 (189)
T cd04134 77 LCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA-RNERD---------------------------- 124 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC-hhhHH----------------------------
Confidence 999999999999997 5999888654 57999999999999752 11000
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-CeEEEe
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQLLEC 329 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~ 329 (373)
.+.+ ...+.++.+++..++...+ ++|+||
T Consensus 125 --------------------~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (189)
T cd04134 125 --------------------DLQR------------------------------YGKHTISYEEGLAVAKRINALRYLEC 154 (189)
T ss_pred --------------------HHhh------------------------------ccCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 0000 0111234556677777666 799999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.||+++|+.+++.+.
T Consensus 155 SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 155 SAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred cCCcCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 41
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=2.6e-29 Score=216.26 Aligned_cols=161 Identities=37% Similarity=0.587 Sum_probs=134.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.|++...+.+.+..+...+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICT------------------------------- 50 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988889888666555555554445
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..++.+++++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (165)
T cd04140 51 ------------------------------------------------------LQITDTTGSHQFPAMQRLSISKGHAF 76 (165)
T ss_pred ------------------------------------------------------EEEEECCCCCcchHHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccC-CCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDF-QEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~-~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+..|++.+.+..... +++|+++||||+|+..
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~---------------------------------- 122 (165)
T cd04140 77 ILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH---------------------------------- 122 (165)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc----------------------------------
Confidence 99999999999999999998888765322 5688888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..+++..++..++++|+||
T Consensus 123 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~ 145 (165)
T cd04140 123 ---------------------------------------------------------KREVSSNEGAACATEWNCAFMET 145 (165)
T ss_pred ---------------------------------------------------------cCeecHHHHHHHHHHhCCcEEEe
Confidence 11122334455666678899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.|+.+
T Consensus 146 SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 146 SAKTNHNVQELFQELLNL 163 (165)
T ss_pred ecCCCCCHHHHHHHHHhc
Confidence 999999999999999875
No 42
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.3e-29 Score=223.84 Aligned_cols=164 Identities=21% Similarity=0.381 Sum_probs=135.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|...+.+|++ +++.+.+.++ +..+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~----------------------------- 51 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVR----------------------------- 51 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEE-----------------------------
Confidence 5899999999999999999999999998999988 6666666665 55555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..++..++++++
T Consensus 52 --------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~a~ 75 (201)
T cd04107 52 --------------------------------------------------------LQLWDIAGQERFGGMTRVYYRGAV 75 (201)
T ss_pred --------------------------------------------------------EEEEECCCchhhhhhHHHHhCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++|||++++.+|+.+..|+..+..... ....+|+++||||+|+..
T Consensus 76 ~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~------------------------------- 124 (201)
T cd04107 76 GAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK------------------------------- 124 (201)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc-------------------------------
Confidence 99999999999999999999998876431 124577777777777752
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-Ce
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQ 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~~ 325 (373)
.+.+..++.+.+++..+ ++
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (201)
T cd04107 125 ------------------------------------------------------------RLAKDGEQMDQFCKENGFIG 144 (201)
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCce
Confidence 12233445566666777 68
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+||||++|.||+++|+.+++.+..
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986633
No 43
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=3e-29 Score=215.39 Aligned_cols=120 Identities=35% Similarity=0.652 Sum_probs=106.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM------------------------------ 50 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEE------------------------------
Confidence 36999999999999999999999999988899998777677777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (164)
T cd04175 51 -------------------------------------------------------LEILDTAGTEQFTAMRDLYMKNGQG 75 (164)
T ss_pred -------------------------------------------------------EEEEECCCcccchhHHHHHHhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+++..+|+.+..|+..+.... ...++|++++|||+|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVK-DTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCcchh
Confidence 999999999999999999999987654 235789999999999864
No 44
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.96 E-value=4.5e-29 Score=224.32 Aligned_cols=163 Identities=23% Similarity=0.364 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|...+.+|++ |++.+.+.+++ ..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~----------------------------- 51 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVT----------------------------- 51 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEE-----------------------------
Confidence 5899999999999999999999999999999998 77777777654 3444
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|++.|..+...+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~l~~~~~~~ad 75 (215)
T cd04109 52 --------------------------------------------------------LQVWDIGGQSIGGKMLDKYIYGAH 75 (215)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
++++|||++++.+|+.+..|+..+.+.... ...+|+++||||+|+..
T Consensus 76 ~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~-------------------------------- 123 (215)
T cd04109 76 AVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH-------------------------------- 123 (215)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc--------------------------------
Confidence 999999999999999999999999876532 23456777777777642
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++++
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (215)
T cd04109 124 -----------------------------------------------------------NRTVKDDKHARFAQANGMESC 144 (215)
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHcCCEEE
Confidence 233345566777777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.+++...
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
No 45
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=4.1e-29 Score=217.85 Aligned_cols=173 Identities=21% Similarity=0.334 Sum_probs=135.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|..+.|.+.+.+|++ ++....+.+.......
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------------------------- 55 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGG--------------------------- 55 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccc---------------------------
Confidence 468999999999999999999999999999889887 5544444443211100
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.......+.+++||++|+++|..++..+++++
T Consensus 56 ------------------------------------------------~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 87 (180)
T cd04127 56 ------------------------------------------------TLGRGQRIHLQLWDTAGQERFRSLTTAFFRDA 87 (180)
T ss_pred ------------------------------------------------cccCCCEEEEEEEeCCChHHHHHHHHHHhCCC
Confidence 00001223499999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|..+..|+..+..... .+.+|+++||||+|+.+
T Consensus 88 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~-------------------------------- 134 (180)
T cd04127 88 MGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLED-------------------------------- 134 (180)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchh--------------------------------
Confidence 999999999999999999999999876532 24678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++..+++|+
T Consensus 135 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 155 (180)
T cd04127 135 -----------------------------------------------------------QRQVSEEQAKALADKYGIPYF 155 (180)
T ss_pred -----------------------------------------------------------cCccCHHHHHHHHHHcCCeEE
Confidence 122234456777777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.|++++|+.+++.+
T Consensus 156 e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 156 ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3.3e-29 Score=225.64 Aligned_cols=121 Identities=26% Similarity=0.492 Sum_probs=107.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+++|+.+.|...+.+|++ +++...+..++..+.
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~-------------------------- 63 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR-------------------------- 63 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEE--------------------------
Confidence 36689999999999999999999999999999999997 666666655555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 64 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 64 -----------------------------------------------------------FYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred -----------------------------------------------------------EEEEECCCchhhhhhhHHHcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++++|||++++.+|+.+..|+..+.+.. +++|+++||||+|+.+
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhhh
Confidence 9999999999999999999999999998764 5799999999999863
No 47
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=4.2e-29 Score=214.16 Aligned_cols=120 Identities=35% Similarity=0.675 Sum_probs=106.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|+.+++...+.+++..+.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSV------------------------------ 50 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999998889888777777777776666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|+++|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (163)
T cd04176 51 -------------------------------------------------------LEILDTAGTEQFASMRDLYIKNGQG 75 (163)
T ss_pred -------------------------------------------------------EEEEECCCcccccchHHHHHhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+++..|+..+.+... ..++|+++||||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 76 FIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 9999999999999999999998887642 25788999999999753
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=6.4e-29 Score=215.16 Aligned_cols=165 Identities=20% Similarity=0.376 Sum_probs=137.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||+++|++|||||||++||+++.|...|.||++ ++..+.+.+++..+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------- 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFS------------------------------- 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE-------------------------------
Confidence 799999999999999999999999999999998 555667777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..+++++|++
T Consensus 51 ------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~~ 76 (170)
T cd04108 51 ------------------------------------------------------LQLWDTAGQERFKCIASTYYRGAQAI 76 (170)
T ss_pred ------------------------------------------------------EEEEeCCChHHHHhhHHHHhcCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+.++.+... ...+|+++||||+|+.+. +..
T Consensus 77 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~-~~~------------------------------ 124 (170)
T cd04108 77 IIVFDLTDVASLEHTRQWLEDALKEND-PSSVLLFLVGTKKDLSSP-AQY------------------------------ 124 (170)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEChhcCcc-ccc------------------------------
Confidence 999999999999999999999866532 135788999999998541 000
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+..++++.+++..+++|+|||
T Consensus 125 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~e~S 146 (170)
T cd04108 125 ----------------------------------------------------------ALMEQDAIKLAAEMQAEYWSVS 146 (170)
T ss_pred ----------------------------------------------------------cccHHHHHHHHHHcCCeEEEEE
Confidence 0122345566667788999999
Q ss_pred cCCCcCHHHHHHHHHHHhhhh
Q psy16673 331 AKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~~~~ 351 (373)
|++|.||+++|+.+++++..+
T Consensus 147 a~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 147 ALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred CCCCCCHHHHHHHHHHHHHHc
Confidence 999999999999999977443
No 49
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=9.9e-29 Score=213.08 Aligned_cols=162 Identities=30% Similarity=0.469 Sum_probs=137.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 53 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIK---------------------------- 53 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999999999888 555566666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.|..++..+++++
T Consensus 54 ---------------------------------------------------------l~l~D~~g~~~~~~~~~~~~~~a 76 (167)
T cd01867 54 ---------------------------------------------------------LQIWDTAGQERFRTITTAYYRGA 76 (167)
T ss_pred ---------------------------------------------------------EEEEeCCchHHHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~~------------------------------- 123 (167)
T cd01867 77 MGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEEK------------------------------- 123 (167)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc-------------------------------
Confidence 99999999999999999999999988753 257889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..++..++++|+
T Consensus 124 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd01867 124 ------------------------------------------------------------RVVSKEEGEALADEYGIKFL 143 (167)
T ss_pred ------------------------------------------------------------cCCCHHHHHHHHHHcCCEEE
Confidence 11122344556667788999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++..
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999854
No 50
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.96 E-value=1.1e-28 Score=210.53 Aligned_cols=120 Identities=34% Similarity=0.652 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+|..+.+.+.+.+++..+.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL------------------------------ 50 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEE------------------------------
Confidence 37999999999999999999999999988999988777766666665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..++..+++++++
T Consensus 51 -------------------------------------------------------~~i~Dt~G~~~~~~l~~~~~~~~~~ 75 (162)
T cd04138 51 -------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTGEG 75 (162)
T ss_pred -------------------------------------------------------EEEEECCCCcchHHHHHHHHhcCCE
Confidence 8999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+.+..|+..+.+.. ....+|+++||||+|+..
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 76 FLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 999999999999999999999888764 225789999999999863
No 51
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=6.8e-29 Score=212.38 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=126.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+.+|+.+.|.+.+.|+ ...+.+.+.+++..+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~------------------------------- 48 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHL------------------------------- 48 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEE-------------------------------
Confidence 48999999999999999999999998877665 4344567777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++. ..+++++|++
T Consensus 49 ------------------------------------------------------l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 49 ------------------------------------------------------LLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred ------------------------------------------------------EEEEECCCCCc-----hhHHhcCCEE
Confidence 99999999975 2457889999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.||+++..|++++.... ..+.+|+++||||.|+...
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~~~-~~~~~piilvgnK~Dl~~~---------------------------------- 114 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSSYR-NISEIPLILVGTQDAISES---------------------------------- 114 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEeeHHHhhhc----------------------------------
Confidence 99999999999999999999998764 2256889999999887420
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-CCeEEEe
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQLLEC 329 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-~~~~~E~ 329 (373)
..+.++.++++.+++.. +++|+||
T Consensus 115 -------------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~e~ 139 (158)
T cd04103 115 -------------------------------------------------------NPRVIDDARARQLCADMKRCSYYET 139 (158)
T ss_pred -------------------------------------------------------CCcccCHHHHHHHHHHhCCCcEEEE
Confidence 11234555677777665 5899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.||+++|+.+++.
T Consensus 140 SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 140 CATYGLNVERVFQEAAQK 157 (158)
T ss_pred ecCCCCCHHHHHHHHHhh
Confidence 999999999999999863
No 52
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=1.3e-28 Score=211.98 Aligned_cols=159 Identities=27% Similarity=0.487 Sum_probs=132.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 51 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVK------------------------------ 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 7999999999999999999999999888888887 454555555555455
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..++..+++++++
T Consensus 52 -------------------------------------------------------~~l~Dt~g~~~~~~~~~~~~~~~~~ 76 (165)
T cd01865 52 -------------------------------------------------------LQIWDTAGQERYRTITTAYYRGAMG 76 (165)
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHccCCcE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 77 ~l~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~--------------------------------- 121 (165)
T cd01865 77 FILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDE--------------------------------- 121 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCcc---------------------------------
Confidence 999999999999999999999987654 246788888888888641
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
+.+..+.++.+++..+++|+||
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01865 122 ----------------------------------------------------------RVVSSERGRQLADQLGFEFFEA 143 (165)
T ss_pred ----------------------------------------------------------cccCHHHHHHHHHHcCCEEEEE
Confidence 1112234455666778899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.|++++|+.+++.
T Consensus 144 Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 144 SAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 999999999999999874
No 53
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.96 E-value=1.1e-28 Score=216.75 Aligned_cols=169 Identities=25% Similarity=0.418 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|+..+.+++.+.+.+.+... +..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~------------------------------ 50 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIE------------------------------ 50 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEE------------------------------
Confidence 48999999999999999999999999888898886555555544 44444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|+++|..+++.++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (187)
T cd04132 51 -------------------------------------------------------LALWDTAGQEEYDRLRPLSYPDVDV 75 (187)
T ss_pred -------------------------------------------------------EEEEECCCchhHHHHHHHhCCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... +++|+++||||+|+... +.
T Consensus 76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~----------------------------- 122 (187)
T cd04132 76 LLICYAVDNPTSLDNVEDKWFPEVNHFC---PGTPIMLVGLKTDLRKD-KN----------------------------- 122 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhhhC-cc-----------------------------
Confidence 99999999999999996 4988876553 57899999999998641 00
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
..+.+..++++.++...++ +|+
T Consensus 123 ---------------------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 123 ---------------------------------------------------------LDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred ---------------------------------------------------------ccCCcCHHHHHHHHHHcCCcEEE
Confidence 0012344566777888887 999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
||||++|.||+++|+.+++.+.....+
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999976544433
No 54
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=9.7e-29 Score=221.93 Aligned_cols=175 Identities=26% Similarity=0.378 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.. +.+|++ +++.+.. ..+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~------------------------------ 45 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYN------------------------------ 45 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEE------------------------------
Confidence 589999999999999999999999975 567776 4333221 2233
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.|..++..+++++++
T Consensus 46 -------------------------------------------------------l~iwDt~G~e~~~~l~~~~~~~ad~ 70 (220)
T cd04126 46 -------------------------------------------------------ISIWDTAGREQFHGLGSMYCRGAAA 70 (220)
T ss_pred -------------------------------------------------------EEEEeCCCcccchhhHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+++..|+..+.+.. ...+|++|||||+|+.++......+ +
T Consensus 71 ~IlV~Dvt~~~Sf~~l~~~~~~l~~~~--~~~~piIlVgNK~DL~~~~~~~~~~--------~----------------- 123 (220)
T cd04126 71 VILTYDVSNVQSLEELEDRFLGLTDTA--NEDCLFAVVGNKLDLTEEGALAGQE--------K----------------- 123 (220)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccccccccccc--------c-----------------
Confidence 999999999999999999888877653 2579999999999997521110000 0
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC------
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD------ 323 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~------ 323 (373)
.+. + .+. ....|.|+.++++.+|+..+
T Consensus 124 --------------------------~~~-~----------------~~~----~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 124 --------------------------DAG-D----------------RVS----PEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred --------------------------ccc-c----------------ccc----ccccccCCHHHHHHHHHHhCcccccc
Confidence 000 0 000 01235677788888887766
Q ss_pred --------CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 --------FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 --------~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++||||||++|.||+++|..+++.+.
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998664
No 55
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=1.7e-28 Score=210.66 Aligned_cols=162 Identities=26% Similarity=0.487 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVR------------------------------ 50 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEE------------------------------
Confidence 5899999999999999999999999999999988 555566666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++++
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (168)
T cd04119 51 -------------------------------------------------------VNFFDLSGHPEYLEVRNEFYKDTQG 75 (168)
T ss_pred -------------------------------------------------------EEEEECCccHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+++|||++++.+|+.+..|+.++.+.... ...+|+++||||+|+.+
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------------------------- 124 (168)
T cd04119 76 VLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK------------------------------- 124 (168)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc-------------------------------
Confidence 99999999999999999999999876532 23577777777777752
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++.+.++...+++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04119 125 ------------------------------------------------------------HRAVSEDEGRLWAESKGFKY 144 (168)
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 12223344555666778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.|++++|+.+++.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999853
No 56
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.96 E-value=2.5e-28 Score=209.28 Aligned_cols=121 Identities=35% Similarity=0.611 Sum_probs=105.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 51 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAI----------------------------- 51 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEE-----------------------------
Confidence 358999999999999999999999999888888888776666666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~ 75 (164)
T cd04145 52 --------------------------------------------------------LDILDTAGQEEFSAMREQYMRTGE 75 (164)
T ss_pred --------------------------------------------------------EEEEECCCCcchhHHHHHHHhhCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+.+... ...+|++++|||+|+..
T Consensus 76 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 76 GFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 99999999999999999999998877542 24688999999999864
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.96 E-value=2.3e-28 Score=209.67 Aligned_cols=161 Identities=35% Similarity=0.547 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCL------------------------------- 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999988888888777776666666555
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|+++|..++..+++.++++
T Consensus 50 ------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~~~~~~~ 75 (164)
T smart00173 50 ------------------------------------------------------LDILDTAGQEEFSAMRDQYMRTGEGF 75 (164)
T ss_pred ------------------------------------------------------EEEEECCCcccchHHHHHHHhhCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+..+.+... ..+.|+++||||+|+...
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~~---------------------------------- 120 (164)
T smart00173 76 LLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLESE---------------------------------- 120 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------------
Confidence 999999999999999999988876542 246788888888887641
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
+.+..++++.+++..+++|++||
T Consensus 121 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 121 ---------------------------------------------------------RVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred ---------------------------------------------------------ceEcHHHHHHHHHHcCCEEEEee
Confidence 11122344555666778999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.|++++|+.+++..
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999999754
No 58
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=2.4e-28 Score=210.24 Aligned_cols=161 Identities=32% Similarity=0.499 Sum_probs=136.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK----------------------------- 52 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999888888877 566677776666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..++..+++++|
T Consensus 53 --------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~ 76 (166)
T cd01869 53 --------------------------------------------------------LQIWDTAGQERFRTITSSYYRGAH 76 (166)
T ss_pred --------------------------------------------------------EEEEECCCcHhHHHHHHHHhCcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|..+..|+..+.... .+..|++++|||+|+..
T Consensus 77 ~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~--------------------------------- 121 (166)
T cd01869 77 GIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD--------------------------------- 121 (166)
T ss_pred EEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc---------------------------------
Confidence 9999999999999999999999988764 24678888888888753
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.+++..+++|+|
T Consensus 122 ----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T cd01869 122 ----------------------------------------------------------KRVVDYSEAQEFADELGIPFLE 143 (166)
T ss_pred ----------------------------------------------------------ccCCCHHHHHHHHHHcCCeEEE
Confidence 1112334556677778899999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++..
T Consensus 144 ~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 144 TSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred EECCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
No 59
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=2.7e-28 Score=216.64 Aligned_cols=162 Identities=31% Similarity=0.472 Sum_probs=137.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 56 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVK---------------------------- 56 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEE----------------------------
Confidence 478999999999999999999999999888888887 566666666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..++..+++++
T Consensus 57 ---------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~a 79 (199)
T cd04110 57 ---------------------------------------------------------LQIWDTAGQERFRTITSTYYRGT 79 (199)
T ss_pred ---------------------------------------------------------EEEEeCCCchhHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|++.+.... +.+|+++||||+|+...
T Consensus 80 ~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~------------------------------- 125 (199)
T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER------------------------------- 125 (199)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc-------------------------------
Confidence 99999999999999999999999987754 57889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..+++..++...+++||
T Consensus 126 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 126 ------------------------------------------------------------KVVETEDAYKFAGQMGISLF 145 (199)
T ss_pred ------------------------------------------------------------cccCHHHHHHHHHHcCCEEE
Confidence 11123344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.||+++|+.+++.+.
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 146 ETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999763
No 60
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=2.6e-28 Score=218.66 Aligned_cols=163 Identities=29% Similarity=0.438 Sum_probs=135.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+||+++|++|||||||+++|+++.|...+.+|++ +++.+.+.+. +..+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~---------------------------- 53 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIK---------------------------- 53 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEE----------------------------
Confidence 58999999999999999999999999888888887 6666666653 33444
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|++.|..+...+++++
T Consensus 54 ---------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~ 76 (211)
T cd04111 54 ---------------------------------------------------------LQLWDTAGQERFRSITRSYYRNS 76 (211)
T ss_pred ---------------------------------------------------------EEEEeCCcchhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+++..|+..+.+... ...+|++++|||+|+..
T Consensus 77 d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~-------------------------------- 123 (211)
T cd04111 77 VGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLES-------------------------------- 123 (211)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccc--------------------------------
Confidence 999999999999999999999998876542 23567778888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.+++.++++|+
T Consensus 124 -----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 124 -----------------------------------------------------------QRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHhCCEEE
Confidence 122344456677777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.||+++|+.|++...
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
No 61
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.4e-28 Score=214.53 Aligned_cols=181 Identities=30% Similarity=0.475 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+.+.|.. .+.+|++ ++..+.+.+++..+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 51 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVK----------------------------- 51 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEE-----------------------------
Confidence 589999999999999999999998864 5677776 555556666666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++|||+|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ad 75 (191)
T cd04112 52 --------------------------------------------------------LQIWDTAGQERFRSVTHAYYRDAH 75 (191)
T ss_pred --------------------------------------------------------EEEEeCCCcHHHHHhhHHHccCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+++..|+..+.+... ..+|+++||||+|+...
T Consensus 76 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~-------------------------------- 121 (191)
T cd04112 76 ALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGE-------------------------------- 121 (191)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhc--------------------------------
Confidence 99999999999999999999999887642 46889999999998531
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+..++++.++..++++|+|
T Consensus 122 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~~~e 142 (191)
T cd04112 122 -----------------------------------------------------------RVVKREDGERLAKEYGVPFME 142 (191)
T ss_pred -----------------------------------------------------------cccCHHHHHHHHHHcCCeEEE
Confidence 112233456666777899999
Q ss_pred eccCCCcCHHHHHHHHHHHhhhhccCCCcccccccccccccc
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNK 370 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~~~s~~~~~ 370 (373)
|||++|.||+++|+.+++.+...+. ......+.+.+.|.+.
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 183 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKELKHRKY-EQPDEGKFKISDYVTK 183 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhcc-ccCCCCcEEeccccCc
Confidence 9999999999999999986644332 2333334346555543
No 62
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=1.9e-28 Score=212.35 Aligned_cols=169 Identities=28% Similarity=0.522 Sum_probs=140.3
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+|+|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 47 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVE--------------------------------- 47 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEE---------------------------------
Confidence 68999999999999999999999998889888777777777766666
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+|||+|++.|..++..++.++|++++
T Consensus 48 ----------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 48 ----------------------------------------------------LGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred ----------------------------------------------------EEEEECCCCcccchhchhhcCCCCEEEE
Confidence 9999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEE
Q psy16673 173 VYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFL 251 (373)
Q Consensus 173 v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i 251 (373)
|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... +..
T Consensus 76 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~-~~~------------------------------- 120 (174)
T smart00174 76 CFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED-KST------------------------------- 120 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC-hhh-------------------------------
Confidence 99999999999996 5999888754 68999999999999741 000
Q ss_pred EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEEec
Q psy16673 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLECS 330 (373)
Q Consensus 252 ~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~S 330 (373)
. +.+.. ...+.++.++++.+++..++ +|+|||
T Consensus 121 ----------~-------~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e~S 153 (174)
T smart00174 121 ----------L-------RELSK------------------------------QKQEPVTYEQGEALAKRIGAVKYLECS 153 (174)
T ss_pred ----------h-------hhhhc------------------------------ccCCCccHHHHHHHHHHcCCcEEEEec
Confidence 0 00000 11233567788889998986 999999
Q ss_pred cCCCcCHHHHHHHHHHHh
Q psy16673 331 AKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~nv~elf~~i~~~~ 348 (373)
|++|.||+++|+.+++.+
T Consensus 154 a~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 154 ALTQEGVREVFEEAIRAA 171 (174)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999864
No 63
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=3.5e-28 Score=207.99 Aligned_cols=157 Identities=26% Similarity=0.512 Sum_probs=130.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec--ceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG--AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+. +..+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---------------------------- 52 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVR---------------------------- 52 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEE----------------------------
Confidence 4899999999999999999999999888888887 4444444443 33333
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 53 ---------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~ 75 (162)
T cd04106 53 ---------------------------------------------------------LMLWDTAGQEEFDAITKAYYRGA 75 (162)
T ss_pred ---------------------------------------------------------EEEeeCCchHHHHHhHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+.... ..+|+++||||+|+...
T Consensus 76 ~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~------------------------------- 121 (162)
T cd04106 76 QACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ------------------------------- 121 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc-------------------------------
Confidence 99999999999999999999999887654 57889999999998641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.++.++++.+++..+++|+
T Consensus 122 ------------------------------------------------------------~~v~~~~~~~~~~~~~~~~~ 141 (162)
T cd04106 122 ------------------------------------------------------------AVITNEEAEALAKRLQLPLF 141 (162)
T ss_pred ------------------------------------------------------------cCCCHHHHHHHHHHcCCeEE
Confidence 11233455667777889999
Q ss_pred EeccCCCcCHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~ 346 (373)
||||++|.|++++|+.+..
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999999999976
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=5.4e-28 Score=207.33 Aligned_cols=116 Identities=35% Similarity=0.601 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|.+.+.++.. +.+.....+++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTIL------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999887777766 455555555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++|||+|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (161)
T cd04124 51 -------------------------------------------------------VDFWDTAGQERFQTMHASYYHKAHA 75 (161)
T ss_pred -------------------------------------------------------EEEEeCCCchhhhhhhHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+.. +++|++++|||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 76 CILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDLD 117 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccCc
Confidence 999999999999999999999997654 578999999999984
No 65
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=2.7e-28 Score=216.23 Aligned_cols=111 Identities=24% Similarity=0.492 Sum_probs=101.5
Q ss_pred EcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecccc
Q psy16673 16 LGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPK 94 (373)
Q Consensus 16 vG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
+|++|||||||++||+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~----------------------------------- 45 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIR----------------------------------- 45 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEE-----------------------------------
Confidence 69999999999999999999988999997 677777777776666
Q ss_pred chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEEEE
Q psy16673 95 LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVY 174 (373)
Q Consensus 95 ~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 174 (373)
+.+|||+|+++|..++..++++++++++||
T Consensus 46 --------------------------------------------------l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~ 75 (200)
T smart00176 46 --------------------------------------------------FNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 75 (200)
T ss_pred --------------------------------------------------EEEEECCCchhhhhhhHHHhcCCCEEEEEE
Confidence 999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 175 STTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 175 dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
|++++.||+.+..|+.++.+.. +.+|+++||||+|+.
T Consensus 76 D~t~~~S~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 76 DVTARVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred ECCChHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 9999999999999999998865 579999999999985
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=5.9e-28 Score=208.60 Aligned_cols=123 Identities=25% Similarity=0.475 Sum_probs=104.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 55 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT-------------------------- 55 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEE--------------------------
Confidence 34579999999999999999999999999888888877 555666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++||++|+++|..++..+++
T Consensus 56 -----------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 56 -----------------------------------------------------------LQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred -----------------------------------------------------------EEEEeCCChHHHHHhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
++|++++|||++++.+|+.+..|+.++...... ...+|++++|||+|+.
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999999999999999999999988765421 2457888888888874
No 67
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=2.2e-28 Score=212.17 Aligned_cols=169 Identities=26% Similarity=0.443 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|.++.|...+.+|..+.+...+.+++..+.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVR------------------------------- 49 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999999999988888777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~a~~~ 75 (173)
T cd04130 50 ------------------------------------------------------LQLCDTAGQDEFDKLRPLCYPDTDVF 75 (173)
T ss_pred ------------------------------------------------------EEEEECCCChhhccccccccCCCcEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +++|++++|||+|+... ...
T Consensus 76 i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~----------------------------- 122 (173)
T cd04130 76 LLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRTD-VNV----------------------------- 122 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhccC-hhH-----------------------------
Confidence 9999999999999985 6998887643 57999999999998641 000
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
...+. -...+.|+.++++.+++..++ +|+|
T Consensus 123 -------------------~~~~~------------------------------~~~~~~v~~~~~~~~a~~~~~~~~~e 153 (173)
T cd04130 123 -------------------LIQLA------------------------------RYGEKPVSQSRAKALAEKIGACEYIE 153 (173)
T ss_pred -------------------HHHHh------------------------------hcCCCCcCHHHHHHHHHHhCCCeEEE
Confidence 00000 012345667788889998887 8999
Q ss_pred eccCCCcCHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~ 346 (373)
|||++|.||+++|+.++.
T Consensus 154 ~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 154 CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred EeCCCCCCHHHHHHHHHh
Confidence 999999999999999875
No 68
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=6.6e-28 Score=212.08 Aligned_cols=161 Identities=31% Similarity=0.483 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIK------------------------------ 50 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888887 555566666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..++.++|+
T Consensus 51 -------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~~d~ 75 (188)
T cd04125 51 -------------------------------------------------------LQIWDTNGQERFRSLNNSYYRGAHG 75 (188)
T ss_pred -------------------------------------------------------EEEEECCCcHHHHhhHHHHccCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+.++..... ..+|++++|||+|+.+
T Consensus 76 iilv~d~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~---------------------------------- 119 (188)
T cd04125 76 YLLVYDVTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVN---------------------------------- 119 (188)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcc----------------------------------
Confidence 9999999999999999999999887642 4578888888888753
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.+++..+++|+||
T Consensus 120 ---------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~ev 142 (188)
T cd04125 120 ---------------------------------------------------------NKVVDSNIAKSFCDSLNIPFFET 142 (188)
T ss_pred ---------------------------------------------------------cccCCHHHHHHHHHHcCCeEEEE
Confidence 11223345566677778899999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.|++++|+.+++.+.
T Consensus 143 Sa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 143 SAKQSINVEEAFILLVKLII 162 (188)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999753
No 69
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=5.6e-28 Score=208.41 Aligned_cols=116 Identities=26% Similarity=0.523 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++....+..++..+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIR------------------------------ 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888887 555555555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.+..++..++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (166)
T cd00877 51 -------------------------------------------------------FNVWDTAGQEKFGGLRDGYYIGGQC 75 (166)
T ss_pred -------------------------------------------------------EEEEECCCChhhccccHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+.. .++|+++||||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piiiv~nK~Dl~ 117 (166)
T cd00877 76 AIIMFDVTSRVTYKNVPNWHRDLVRVC---GNIPIVLCGNKVDIK 117 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhcc
Confidence 999999999999999999999998875 389999999999986
No 70
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=6.6e-28 Score=208.61 Aligned_cols=162 Identities=28% Similarity=0.491 Sum_probs=136.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|+..+.++++ +++.+.+.+++..+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 52 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIK----------------------------- 52 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEE-----------------------------
Confidence 47999999999999999999999999988888887 666667777666666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhhhhhc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLSIATA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~~~~~ 167 (373)
+++||++|++.|. .+...+++++
T Consensus 53 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~ 76 (170)
T cd04115 53 --------------------------------------------------------VQLWDTAGQERFRKSMVQHYYRNV 76 (170)
T ss_pred --------------------------------------------------------EEEEeCCChHHHHHhhHHHhhcCC
Confidence 9999999999887 5788889999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|++.+..... ..++|+++||||+|+..
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~-------------------------------- 123 (170)
T cd04115 77 HAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLRE-------------------------------- 123 (170)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchh--------------------------------
Confidence 999999999999999999999999887642 24688888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.+++..+++|+
T Consensus 124 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 144 (170)
T cd04115 124 -----------------------------------------------------------QIQVPTDLAQRFADAHSMPLF 144 (170)
T ss_pred -----------------------------------------------------------hcCCCHHHHHHHHHHcCCcEE
Confidence 222344566777777889999
Q ss_pred EeccCC---CcCHHHHHHHHHHHh
Q psy16673 328 ECSAKD---NYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAkt---g~nv~elf~~i~~~~ 348 (373)
||||++ +.||+++|..+++.+
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999 999999999999754
No 71
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=6.5e-28 Score=220.57 Aligned_cols=119 Identities=41% Similarity=0.683 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+++.|...+.+|+++++.+.+.+++..+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~------------------------------- 49 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQ------------------------------- 49 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999999999999888888888777777
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|++.|..++..++.++|++
T Consensus 50 ------------------------------------------------------l~I~Dt~G~~~~~~~~~~~~~~ad~i 75 (247)
T cd04143 50 ------------------------------------------------------LDILDTSGNHPFPAMRRLSILTGDVF 75 (247)
T ss_pred ------------------------------------------------------EEEEECCCChhhhHHHHHHhccCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhc-------cCCCccEEEeccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQ-------DFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~-------~~~~~pi~ivgnK~Dl~ 214 (373)
++|||++++.||+.+..|++++..... ...++|++++|||+|+.
T Consensus 76 IlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 76 ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 999999999999999999999876521 12457777777777775
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=1.1e-27 Score=205.86 Aligned_cols=119 Identities=33% Similarity=0.558 Sum_probs=104.5
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+..++..+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 53 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIK----------------------------- 53 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE-----------------------------
Confidence 57999999999999999999999999888888887 666777777666566
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..+...++.+++
T Consensus 54 --------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~ 77 (165)
T cd01868 54 --------------------------------------------------------AQIWDTAGQERYRAITSAYYRGAV 77 (165)
T ss_pred --------------------------------------------------------EEEEeCCChHHHHHHHHHHHCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 78 GALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 122 (165)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 99999999999999999999999887642 3588888899988764
No 73
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.8e-27 Score=213.03 Aligned_cols=163 Identities=27% Similarity=0.406 Sum_probs=136.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~--------------------------- 56 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIK--------------------------- 56 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEE---------------------------
Confidence 4569999999999999999999999999888888877 555556666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|++.|..++..++++
T Consensus 57 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 57 ----------------------------------------------------------LQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred ----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+.... .+.+|++++|||+|+..
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~--~~~~piiiv~nK~Dl~~------------------------------- 125 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDARQHA--NANMTIMLIGNKCDLAH------------------------------- 125 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCcc-------------------------------
Confidence 999999999999999999999998876553 24678888888888753
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.++.++++.+++.++++|
T Consensus 126 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 145 (210)
T PLN03108 126 ------------------------------------------------------------RRAVSTEEGEQFAKEHGLIF 145 (210)
T ss_pred ------------------------------------------------------------ccCCCHHHHHHHHHHcCCEE
Confidence 22234456677777888999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.||+++|+.+++.+
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999855
No 74
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.5e-27 Score=214.55 Aligned_cols=163 Identities=31% Similarity=0.476 Sum_probs=139.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.+|++ ++..+.+.+++..+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~---------------------------- 62 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVK---------------------------- 62 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888887 677777877777666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|+++|..++..+++++
T Consensus 63 ---------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~~ 85 (216)
T PLN03110 63 ---------------------------------------------------------AQIWDTAGQERYRAITSAYYRGA 85 (216)
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||++++.+|+.+..|+..+..... .++|+++||||+|+..
T Consensus 86 ~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~-------------------------------- 131 (216)
T PLN03110 86 VGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH-------------------------------- 131 (216)
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc--------------------------------
Confidence 999999999999999999999998877642 4688888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.++...+++|+
T Consensus 132 -----------------------------------------------------------~~~~~~~~~~~l~~~~~~~~~ 152 (216)
T PLN03110 132 -----------------------------------------------------------LRSVAEEDGQALAEKEGLSFL 152 (216)
T ss_pred -----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEE
Confidence 122234455667777789999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
||||++|.|++++|+.+++.+.
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988653
No 75
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.96 E-value=1.6e-27 Score=237.84 Aligned_cols=195 Identities=17% Similarity=0.155 Sum_probs=138.6
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc-
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS- 215 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~- 215 (373)
+.+|||+|.+. +......++..+|++++|||+++..++.. ..|...++. ...|+++|+||+|+..
T Consensus 88 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-----~~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 88 FTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-----SGKPVILAANKVDDERG 161 (472)
T ss_pred EEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECccCCcc
Confidence 88999999763 33445667889999999999998766543 344444443 4689999999999853
Q ss_pred ------------------------------------------------------------------------ccc-----
Q psy16673 216 ------------------------------------------------------------------------HHR----- 218 (373)
Q Consensus 216 ------------------------------------------------------------------------~~r----- 218 (373)
..+
T Consensus 162 ~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 162 EADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred chhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 000
Q ss_pred -------------ccccccceeeeccCC----------CCCchhhh-hccccccEEEEEEecCCccchhhHHHHHHHHHh
Q psy16673 219 -------------AVHLEDVDILDTCGD----------LQFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274 (373)
Q Consensus 219 -------------~~~~~~~~~~dtag~----------~~~~~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~ 274 (373)
......+.++||+|. +.|..++. .+++.++++++|||++++.+++++.. ...+..
T Consensus 242 ~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~ 320 (472)
T PRK03003 242 VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE 320 (472)
T ss_pred CCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 001112478999995 33444443 36889999999999999999988753 333322
Q ss_pred hccCCCCCchhhccccccceeeeeccccccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 275 QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 275 ~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
.+.| +|+|+||||+.... .+..+..+.++....+|+++|||++|.||+++|+.+.+.+...
T Consensus 321 ----~~~p------------iIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 321 ----AGRA------------LVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred ----cCCC------------EEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 2344 55999999996432 2233333445555568999999999999999999999998888
Q ss_pred ccCCCcccccc
Q psy16673 352 TTNGDENSLKR 362 (373)
Q Consensus 352 ~~~~~~~~~~~ 362 (373)
.++.+++.+++
T Consensus 385 ~~~i~t~~ln~ 395 (472)
T PRK03003 385 DTRIPTGRLNA 395 (472)
T ss_pred cccCCHHHHHH
Confidence 88887777654
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=1.5e-27 Score=211.57 Aligned_cols=120 Identities=33% Similarity=0.551 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+|+|++|||||||+++|+.+.|+..+.|++. +++.+.+.+++..+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~------------------------------ 50 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYD------------------------------ 50 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEE------------------------------
Confidence 5899999999999999999999999998999987 566666666666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh--------HhHH
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP--------AMRR 161 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~--------~~~~ 161 (373)
+++|||+|.+.|. ....
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~e~~~~~~ 75 (198)
T cd04142 51 -------------------------------------------------------LHILDVPNMQRYPGTAGQEWMDPRF 75 (198)
T ss_pred -------------------------------------------------------EEEEeCCCcccCCccchhHHHHHHH
Confidence 9999999976542 1234
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~ 215 (373)
.++..+|++++|||++++.||+.+..|++.+.+... ....+|+++||||+|+..
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 457899999999999999999999999998877642 235789999999999864
No 77
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.95 E-value=7.3e-28 Score=208.72 Aligned_cols=171 Identities=24% Similarity=0.442 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 49 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL------------------------------- 49 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999988889988777777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++.|..++..+++++|++
T Consensus 50 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~~~ 75 (174)
T cd04135 50 ------------------------------------------------------LGLYDTAGQEDYDRLRPLSYPMTDVF 75 (174)
T ss_pred ------------------------------------------------------EEEEeCCCcccccccccccCCCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
++|||++++.+|+.+. .|+..+.... +..|++++|||+|+.+...
T Consensus 76 ilv~~~~~~~s~~~~~~~~~~~l~~~~---~~~piivv~nK~Dl~~~~~------------------------------- 121 (174)
T cd04135 76 LICFSVVNPASFQNVKEEWVPELKEYA---PNVPYLLVGTQIDLRDDPK------------------------------- 121 (174)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeEchhhhcChh-------------------------------
Confidence 9999999999999996 5888887652 6899999999999864200
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEEE
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLLE 328 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E 328 (373)
+. ..+.. ...+.++.++++.+++..++ +|+|
T Consensus 122 -----------~~-------~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~~~e 153 (174)
T cd04135 122 -----------TL-------ARLND------------------------------MKEKPVTVEQGQKLAKEIGAHCYVE 153 (174)
T ss_pred -----------hH-------HHHhh------------------------------ccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 00 00000 01234566788888888886 7999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|+.+++.+
T Consensus 154 ~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 154 CSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999853
No 78
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.95 E-value=3.1e-27 Score=203.98 Aligned_cols=161 Identities=28% Similarity=0.437 Sum_probs=134.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++++.+.|...+.++.+ ++.+..+..++..+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIK----------------------------- 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 48999999999999999999999988887777776 555566666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|..+...+++.+|
T Consensus 55 --------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~d 78 (168)
T cd01866 55 --------------------------------------------------------LQIWDTAGQESFRSITRSYYRGAA 78 (168)
T ss_pred --------------------------------------------------------EEEEECCCcHHHHHHHHHHhccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++||||.|+...
T Consensus 79 ~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~~-------------------------------- 124 (168)
T cd01866 79 GALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLESR-------------------------------- 124 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccccc--------------------------------
Confidence 99999999999999999999999987642 57899999999998631
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.++.++++.++...+++|+|
T Consensus 125 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~e 145 (168)
T cd01866 125 -----------------------------------------------------------REVSYEEGEAFAKEHGLIFME 145 (168)
T ss_pred -----------------------------------------------------------cCCCHHHHHHHHHHcCCEEEE
Confidence 111233445556667889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.||+++|..+++.+
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998854
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=2.5e-27 Score=202.69 Aligned_cols=159 Identities=29% Similarity=0.467 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++++++.|...+.++.+ ++....+.+++..+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVK------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888888877 555566666655555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~~~~ 75 (161)
T cd04113 51 -------------------------------------------------------LQIWDTAGQERFRSVTRSYYRGAAG 75 (161)
T ss_pred -------------------------------------------------------EEEEECcchHHHHHhHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+.... .+++|++++|||.|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~---------------------------------- 119 (161)
T cd04113 76 ALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLAD---------------------------------- 119 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcch----------------------------------
Confidence 999999999999999999999887654 25788888999988863
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..+++..++...+++|+||
T Consensus 120 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd04113 120 ---------------------------------------------------------QREVTFLEASRFAQENGLLFLET 142 (161)
T ss_pred ---------------------------------------------------------hccCCHHHHHHHHHHcCCEEEEE
Confidence 11123344556666778899999
Q ss_pred ccCCCcCHHHHHHHHHHH
Q psy16673 330 SAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~ 347 (373)
||++|.|++++|+.+++.
T Consensus 143 Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 143 SALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999873
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.95 E-value=3.7e-27 Score=203.43 Aligned_cols=119 Identities=36% Similarity=0.640 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|.++.|...+.+++.+.+.+.+.+++..+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD------------------------------- 50 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEE-------------------------------
Confidence 7999999999999999999999999988899988777777777776666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..++++++++
T Consensus 51 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~~~~ 76 (168)
T cd04177 51 ------------------------------------------------------LEILDTAGTEQFTAMRELYIKSGQGF 76 (168)
T ss_pred ------------------------------------------------------EEEEeCCCcccchhhhHHHHhhCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|...+.+.. ...+.|++++|||.|+..
T Consensus 77 vlv~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 77 LLVYSVTSEASLNELGELREQVLRIK-DSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCCEEEEEEChhccc
Confidence 99999999999999999999887653 235788888999998764
No 81
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.95 E-value=3.9e-27 Score=207.94 Aligned_cols=164 Identities=24% Similarity=0.417 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+++.|.. .+.+|++ ++..+.+.+++..+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 51 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVT----------------------------- 51 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEE-----------------------------
Confidence 489999999999999999999999974 6788887 445667777777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+++||++|+++|..++..+++++|
T Consensus 52 --------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~~d 75 (193)
T cd04118 52 --------------------------------------------------------LGIWDTAGSERYEAMSRIYYRGAK 75 (193)
T ss_pred --------------------------------------------------------EEEEECCCchhhhhhhHhhcCCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|++.+.... +.+|+++||||+|+......
T Consensus 76 ~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~----------------------------- 123 (193)
T cd04118 76 AAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIEQDRS----------------------------- 123 (193)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccccccc-----------------------------
Confidence 9999999999999999999999987653 57899999999998641000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++.+.++...++++++
T Consensus 124 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 124 ----------------------------------------------------------LRQVDFHDVQDFADEIKAQHFE 145 (193)
T ss_pred ----------------------------------------------------------cCccCHHHHHHHHHHcCCeEEE
Confidence 0112223445566677889999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
+||++|.||+++|+.+++.+.
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998763
No 82
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=4e-27 Score=202.48 Aligned_cols=120 Identities=26% Similarity=0.523 Sum_probs=104.7
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|..+.|...+.++.+ ++..+.+.+++..+.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 53 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVK---------------------------- 53 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEE----------------------------
Confidence 358999999999999999999999999888888876 555666666665555
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..++..+++.+
T Consensus 54 ---------------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~~ 76 (165)
T cd01864 54 ---------------------------------------------------------LQIWDTAGQERFRTITQSYYRSA 76 (165)
T ss_pred ---------------------------------------------------------EEEEECCChHHHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+..
T Consensus 77 d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 77 NGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEE 122 (165)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 99999999999999999999999997653 25788999999999864
No 83
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.95 E-value=3.1e-27 Score=203.21 Aligned_cols=161 Identities=32% Similarity=0.511 Sum_probs=130.9
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|.+.+.++....+.+...+++..+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVS-------------------------------- 48 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999888888887666666666666666
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhhhhhcCeE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLSIATAHAF 170 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~~~~~~~~ 170 (373)
+++||++|++. +......+++++|++
T Consensus 49 -----------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~d~~ 75 (165)
T cd04146 49 -----------------------------------------------------LEILDTAGQQQADTEQLERSIRWADGF 75 (165)
T ss_pred -----------------------------------------------------EEEEECCCCcccccchHHHHHHhCCEE
Confidence 99999999985 344566788999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEE
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAF 250 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~ 250 (373)
++|||++++.+|+.+..|+..+........++|+++||||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------------------------------- 120 (165)
T cd04146 76 VLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH----------------------------------- 120 (165)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH-----------------------------------
Confidence 999999999999999999998887642124678888888888753
Q ss_pred EEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEec
Q psy16673 251 LLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECS 330 (373)
Q Consensus 251 i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~S 330 (373)
.+.++.++++.+++..+++|+|||
T Consensus 121 --------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 121 --------------------------------------------------------YRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred --------------------------------------------------------hCccCHHHHHHHHHHcCCEEEEeC
Confidence 122334456667777889999999
Q ss_pred cCCCc-CHHHHHHHHHHHh
Q psy16673 331 AKDNY-NIKEVFRTFLTLS 348 (373)
Q Consensus 331 Aktg~-nv~elf~~i~~~~ 348 (373)
|++|. ||+++|+.+++..
T Consensus 145 a~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 145 AAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCchhHHHHHHHHHHHH
Confidence 99995 9999999999853
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.95 E-value=5.6e-27 Score=201.05 Aligned_cols=117 Identities=25% Similarity=0.475 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+||+++|++|||||||++++..+ .|++.+.++++ +++.+.+.++ +..+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--------------------------- 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVE--------------------------- 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEE---------------------------
Confidence 58999999999999999999865 78888888887 6655555554 23344
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 54 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 75 (164)
T cd04101 54 ----------------------------------------------------------LFIFDSAGQELYSDMVSNYWES 75 (164)
T ss_pred ----------------------------------------------------------EEEEECCCHHHHHHHHHHHhCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|++.+.... ..+|+++||||+|+.+
T Consensus 76 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 76 PSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLAD 121 (164)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 999999999999999999999999988764 5689999999999864
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.95 E-value=7e-27 Score=210.83 Aligned_cols=164 Identities=25% Similarity=0.377 Sum_probs=133.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+||+++|++|||||||+++|+.+.|. ..+.++.+ +++.+.+.+++..+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~----------------------------- 51 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEEST----------------------------- 51 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEE-----------------------------
Confidence 58999999999999999999989887 77778876 777788887776666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh-hc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA-TA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~-~~ 167 (373)
+.+||++|++ ..+...++. ++
T Consensus 52 --------------------------------------------------------l~i~Dt~G~~--~~~~~~~~~~~a 73 (221)
T cd04148 52 --------------------------------------------------------LVVIDHWEQE--MWTEDSCMQYQG 73 (221)
T ss_pred --------------------------------------------------------EEEEeCCCcc--hHHHhHHhhcCC
Confidence 9999999998 334555666 99
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+..
T Consensus 74 d~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~-------------------------------- 120 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLAR-------------------------------- 120 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhccc--------------------------------
Confidence 99999999999999999999999887653 124678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.++.++++.++...+++|+
T Consensus 121 -----------------------------------------------------------~~~v~~~~~~~~a~~~~~~~~ 141 (221)
T cd04148 121 -----------------------------------------------------------SREVSVQEGRACAVVFDCKFI 141 (221)
T ss_pred -----------------------------------------------------------cceecHHHHHHHHHHcCCeEE
Confidence 122334455667777889999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
||||++|.||+++|+.+++.+...+.
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~~~~~~ 167 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQIRLRRD 167 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999997755443
No 86
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=6.3e-27 Score=203.02 Aligned_cols=172 Identities=25% Similarity=0.424 Sum_probs=137.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.||+++|++|||||||+++|.++.|+..+.|++.+.+...+.+++..+.
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVE------------------------------ 50 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEE------------------------------
Confidence 36899999999999999999999999998999988766666666666566
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+|||+|++.|..++..++.++|+
T Consensus 51 -------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 51 -------------------------------------------------------LALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred -------------------------------------------------------EEEEeCCCchhhhhccccccCCCCE
Confidence 9999999999999888888999999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+++|||++++.+|+.+. .|+..+.... .+.|+++||||+|+... .....
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~~~~------------------------- 125 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND--EHTRR------------------------- 125 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC--hhhhh-------------------------
Confidence 99999999999999996 5888887653 57999999999998641 00000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
.+. ....+.+...+++.++...+. +|+
T Consensus 126 ----------------------~i~------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~ 153 (175)
T cd01870 126 ----------------------ELA------------------------------KMKQEPVKPEEGRDMANKIGAFGYM 153 (175)
T ss_pred ----------------------hhh------------------------------hccCCCccHHHHHHHHHHcCCcEEE
Confidence 000 001122345567777777764 899
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
||||++|.||+++|+.+++.+
T Consensus 154 ~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 154 ECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EeccccCcCHHHHHHHHHHHh
Confidence 999999999999999999754
No 87
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1e-26 Score=204.39 Aligned_cols=176 Identities=24% Similarity=0.439 Sum_probs=138.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+.||+|+|++|||||||+++|..+.|+..+.+++.+.+...+.+++..+.
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 50 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQ------------------------------ 50 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEE------------------------------
Confidence 46999999999999999999999999888888877665555555555444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|....+.+++++++
T Consensus 51 -------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~~~a~~ 75 (187)
T cd04129 51 -------------------------------------------------------LALWDTAGQEEYERLRPLSYSKAHV 75 (187)
T ss_pred -------------------------------------------------------EEEEECCCChhccccchhhcCCCCE
Confidence 8999999999988887788899999
Q ss_pred EEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 170 FLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++||+++.++|+.+. .|++.+.... +++|+++||||+|+.++ ....+
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~~--~~~~~------------------------- 125 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQD--AVAKE------------------------- 125 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhhhC--ccccc-------------------------
Confidence 99999999999999997 5999887654 57999999999998641 00000
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-eEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-QLL 327 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~ 327 (373)
+....+.++.++++.+++..++ +||
T Consensus 126 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 126 ------------------------------------------------------EYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred ------------------------------------------------------ccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 0011223345567778888884 899
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
||||++|.||+++|+.+++.+...++.
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 999999999999999999866444443
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=8.7e-27 Score=201.57 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=102.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccC-Cceecceec-ceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVED-LYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
++.+||+++|++|||||||++||+.+.|. ..+.||+++ +..+.+.+++..+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~-------------------------- 55 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKY-------------------------- 55 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEE--------------------------
Confidence 45789999999999999999999999998 889999884 44455666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..++..++.
T Consensus 56 -----------------------------------------------------------l~~~d~~g~~~~~~~~~~~~~ 76 (169)
T cd01892 56 -----------------------------------------------------------LILREVGEDEVAILLNDAELA 76 (169)
T ss_pred -----------------------------------------------------------EEEEecCCcccccccchhhhh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+... ..+|+++||||+|+.+
T Consensus 77 ~~d~~llv~d~~~~~s~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 77 ACDVACLVYDSSDPKSFSYCAEVYKKYFML----GEIPCLFVAAKADLDE 122 (169)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHhccC----CCCeEEEEEEcccccc
Confidence 999999999999999999999998865322 4689999999999864
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.94 E-value=4.9e-26 Score=194.48 Aligned_cols=117 Identities=30% Similarity=0.634 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++++..|...+.++.+ ++..+.+.+++..+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVR------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEE------------------------------
Confidence 4899999999999999999999999888888877 666677766665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|+++|..+...++.++++
T Consensus 51 -------------------------------------------------------l~~~D~~G~~~~~~~~~~~~~~~~~ 75 (161)
T cd01861 51 -------------------------------------------------------LQLWDTAGQERFRSLIPSYIRDSSV 75 (161)
T ss_pred -------------------------------------------------------EEEEECCCcHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+..... .++|++++|||+|+.
T Consensus 76 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~ 118 (161)
T cd01861 76 AVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLS 118 (161)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhcc
Confidence 9999999999999999999998876542 368999999999985
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.94 E-value=9.2e-26 Score=202.20 Aligned_cols=165 Identities=25% Similarity=0.372 Sum_probs=129.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+..+||+|+|++|||||||+++|+++.+. .+.++++ ++....+.+++..+.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 63 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLK--------------------------- 63 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEE---------------------------
Confidence 34789999999999999999999988774 4566666 444555655555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|+++|..++..++++
T Consensus 64 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 64 ----------------------------------------------------------LTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+.. |...+.... ....+|+++||||+|+..
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~-~~~~~~~ilv~NK~Dl~~------------------------------ 134 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYS-TNQDCVKMLVGNKVDRES------------------------------ 134 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc------------------------------
Confidence 999999999999999999976 666555432 224577888888888753
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..+++..++...+++
T Consensus 135 -------------------------------------------------------------~~~i~~~~~~~~~~~~~~~ 153 (211)
T PLN03118 135 -------------------------------------------------------------ERDVSREEGMALAKEHGCL 153 (211)
T ss_pred -------------------------------------------------------------cCccCHHHHHHHHHHcCCE
Confidence 1122333445566667889
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
||||||++|.|++++|+.+++....
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986633
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.94 E-value=6.3e-26 Score=194.24 Aligned_cols=119 Identities=31% Similarity=0.554 Sum_probs=105.7
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++++.+.|...+.++.+ ++.++.+.+++..+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~----------------------------- 51 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVK----------------------------- 51 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 47999999999999999999999999887888887 456778888777666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|...+..+++++|
T Consensus 52 --------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~~~ 75 (163)
T cd01860 52 --------------------------------------------------------FEIWDTAGQERYRSLAPMYYRGAA 75 (163)
T ss_pred --------------------------------------------------------EEEEeCCchHHHHHHHHHHhccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||++++.+|+.+..|+..+..... +.+|+++++||+|+..
T Consensus 76 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 76 AAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 99999999999999999999999887642 5789999999999863
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.94 E-value=8.5e-26 Score=193.36 Aligned_cols=118 Identities=34% Similarity=0.612 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+...+...+.++++ ++....+.+++..+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVK------------------------------ 50 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988877777777 455556666555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d~ 75 (164)
T smart00175 51 -------------------------------------------------------LQIWDTAGQERFRSITSSYYRGAVG 75 (164)
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+++.+..|+..+..... +.+|+++++||+|+..
T Consensus 76 ~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 76 ALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 9999999999999999999999887653 5789999999999764
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.94 E-value=1.1e-25 Score=192.58 Aligned_cols=119 Identities=29% Similarity=0.592 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++++.+.|...+.+++.+.+.+....++..+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQ------------------------------- 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999998899988877777777766666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|++.|..++..++++++++
T Consensus 50 ------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~~~ 75 (164)
T cd04139 50 ------------------------------------------------------LNILDTAGQEDYAAIRDNYHRSGEGF 75 (164)
T ss_pred ------------------------------------------------------EEEEECCChhhhhHHHHHHhhcCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||+.++.+|+.+..|+..+..... ...+|+++|+||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 76 LLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 999999999999999999988887642 25789999999999864
No 94
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.94 E-value=1.9e-25 Score=190.99 Aligned_cols=118 Identities=26% Similarity=0.493 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|++..|...+.++.+ ++....+.+++..+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVK------------------------------ 50 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988777777776 444455555555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~d~ 75 (161)
T cd01863 51 -------------------------------------------------------LAIWDTAGQERFRTLTSSYYRGAQG 75 (161)
T ss_pred -------------------------------------------------------EEEEECCCchhhhhhhHHHhCCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+|+.+..|+..+.+... ...+|++++|||+|+.
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 76 VILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccc
Confidence 9999999999999999999999887753 3578899999999986
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.94 E-value=3.1e-25 Score=219.58 Aligned_cols=194 Identities=17% Similarity=0.094 Sum_probs=131.2
Q ss_pred eeeeccccc--------cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc-
Q psy16673 145 VDILDTCGD--------LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS- 215 (373)
Q Consensus 145 ~~i~D~~g~--------~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~- 215 (373)
+.+|||+|. +.+......++..+|++++|+|..+..+.... .+...+++ ...|+++|+||+|+..
T Consensus 49 ~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-----~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 49 FILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-----SGKPVILVANKIDGKKE 122 (429)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----hCCCEEEEEECccCCcc
Confidence 899999996 33445566678899999999999875443331 22233333 3578999999999765
Q ss_pred ------------------------------------------------------------------------ccc-----
Q psy16673 216 ------------------------------------------------------------------------HHR----- 218 (373)
Q Consensus 216 ------------------------------------------------------------------------~~r----- 218 (373)
..+
T Consensus 123 ~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~ 202 (429)
T TIGR03594 123 DAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSD 202 (429)
T ss_pred cccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCC
Confidence 000
Q ss_pred -------------ccccccceeeeccCCCCCch----------hhh-hccccccEEEEEEecCCccchhhHHHHHHHHHh
Q psy16673 219 -------------AVHLEDVDILDTCGDLQFPA----------MRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 274 (373)
Q Consensus 219 -------------~~~~~~~~~~dtag~~~~~~----------~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~ 274 (373)
......+.++||+|..++.. ++. .+++.+|++++|+|++++.+.++..-+ ..+.+
T Consensus 203 ~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~ 281 (429)
T TIGR03594 203 IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIA-GLILE 281 (429)
T ss_pred CCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH
Confidence 00112257899999765542 222 368899999999999999888776432 22222
Q ss_pred hccCCCCCchhhccccccceeeeeccccccccch----hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 275 QRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ----SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 275 ~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r----~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++| +++|+||||+.... .+.......++...++++++|||++|.|++++|+.+.+.+..
T Consensus 282 ----~~~~------------iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 282 ----AGKA------------LVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred ----cCCc------------EEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1344 55999999986221 222233334444456899999999999999999999998877
Q ss_pred hccCCCccccc
Q psy16673 351 LTTNGDENSLK 361 (373)
Q Consensus 351 ~~~~~~~~~~~ 361 (373)
...+.++..++
T Consensus 346 ~~~~i~t~~ln 356 (429)
T TIGR03594 346 ANRRISTSKLN 356 (429)
T ss_pred hcCcCCHHHHH
Confidence 76666655544
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.93 E-value=3.2e-25 Score=191.39 Aligned_cols=120 Identities=29% Similarity=0.566 Sum_probs=102.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++++..|...+.++++ ++..+.+.+.+..+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVT------------------------------ 50 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999998888888876 566666666665555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+++||++|++.|..++..+++++|+
T Consensus 51 -------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~d~ 75 (172)
T cd01862 51 -------------------------------------------------------LQIWDTAGQERFQSLGVAFYRGADC 75 (172)
T ss_pred -------------------------------------------------------EEEEeCCChHHHHhHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
++++||+.++.+|+.+..|.+.+..... ...++|+++||||+|+..
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 76 CVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 9999999999999999999988766542 123688999999999863
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.93 E-value=4.2e-25 Score=188.36 Aligned_cols=118 Identities=30% Similarity=0.578 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.+...+.+++. +...+.+...+..+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRID------------------------------ 50 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999988776666665 344445555444444
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+++.+++.+|+
T Consensus 51 -------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~~~ 75 (162)
T cd04123 51 -------------------------------------------------------LAIWDTAGQERYHALGPIYYRDADG 75 (162)
T ss_pred -------------------------------------------------------EEEEECCchHHHHHhhHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+++.+..|+.++..... .++|+++++||+|+..
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~nK~D~~~ 119 (162)
T cd04123 76 AILVYDITDADSFQKVKKWIKELKQMRG--NNISLVIVGNKIDLER 119 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 9999999999999999999999887753 3688999999999863
No 98
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=6.4e-25 Score=189.21 Aligned_cols=121 Identities=27% Similarity=0.560 Sum_probs=103.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+..+||+++|++|||||||+++++.+.+...+.++++ ++..+.+.+.+..+.
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 57 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIK--------------------------- 57 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEE---------------------------
Confidence 4568999999999999999999998888877777776 566666666666555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|...+..++..
T Consensus 58 ----------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 58 ----------------------------------------------------------LQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred ----------------------------------------------------------EEEEECCCcHHHHHHHHHHhcC
Confidence 9999999999999998999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||+.+..+|+.+..|+..+..... ..+|++++|||.|+.+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 9999999999999999999999998876642 4688888899999753
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=3.3e-25 Score=196.63 Aligned_cols=118 Identities=47% Similarity=0.814 Sum_probs=104.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------------- 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLT-------------------------------- 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEE--------------------------------
Confidence 699999999999999999999999888888887776666766665555
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|+..|..++..++.++|+++
T Consensus 49 -----------------------------------------------------l~i~D~~G~~~~~~~~~~~~~~ad~vi 75 (198)
T cd04147 49 -----------------------------------------------------LDILDTSGSYSFPAMRKLSIQNSDAFA 75 (198)
T ss_pred -----------------------------------------------------EEEEECCCchhhhHHHHHHhhcCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|||++++.+|+.+..|+..+.+... ...+|+++++||.|+..
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 76 LVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 99999999999999999998887653 24699999999999864
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=6.7e-25 Score=189.24 Aligned_cols=117 Identities=31% Similarity=0.602 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|+.+.|...+.++..+.+...+...+..+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 49 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVN------------------------------- 49 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999888888888776666666666666
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..+++.+|++
T Consensus 50 ------------------------------------------------------l~~~D~~g~~~~~~~~~~~~~~~~~~ 75 (171)
T cd00157 50 ------------------------------------------------------LGLWDTAGQEEYDRLRPLSYPNTDVF 75 (171)
T ss_pred ------------------------------------------------------EEEEeCCCcccccccchhhcCCCCEE
Confidence 99999999999988888889999999
Q ss_pred EEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|..+.. |+..+.... ...|+++||||+|+..
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~ 118 (171)
T cd00157 76 LICFSVDSPSSFENVKTKWIPEIRHYC---PNVPIILVGTKIDLRD 118 (171)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEccHHhhh
Confidence 99999999999988754 887777654 4799999999999975
No 101
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.93 E-value=2.2e-24 Score=188.08 Aligned_cols=119 Identities=29% Similarity=0.541 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
.||+++|++|||||||+++|+...|...+.|++.+.+++.+.+++..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------- 50 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYH------------------------------- 50 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEE-------------------------------
Confidence 5899999999999999999999999888888887666666666655555
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++||++|+++|..++..++..++++
T Consensus 51 ------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~~~ 76 (180)
T cd04137 51 ------------------------------------------------------LEIVDTAGQDEYSILPQKYSIGIHGY 76 (180)
T ss_pred ------------------------------------------------------EEEEECCChHhhHHHHHHHHhhCCEE
Confidence 89999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||+++..+|+.+..|+..+.+... ..+.|+++++||+|+..
T Consensus 77 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 77 ILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 999999999999999999888776532 24678899999999863
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=3.8e-25 Score=191.14 Aligned_cols=119 Identities=18% Similarity=0.291 Sum_probs=94.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|..+.|.. +.||++-.+. .+ ....+.
T Consensus 6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~--~~~~~~--------------------------- 54 (168)
T cd04149 6 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TV--TYKNVK--------------------------- 54 (168)
T ss_pred CCCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EE--EECCEE---------------------------
Confidence 3567899999999999999999999887754 5666652211 11 111222
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++||++|+++|..++..++++
T Consensus 55 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 76 (168)
T cd04149 55 ----------------------------------------------------------FNVWDVGGQDKIRPLWRHYYTG 76 (168)
T ss_pred ----------------------------------------------------------EEEEECCCCHHHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+.++.... ...++|++|+|||+|+..
T Consensus 77 a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 77 TQGLIFVVDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPD 124 (168)
T ss_pred CCEEEEEEeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCcc
Confidence 999999999999999999988777665432 124689999999999864
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=2.5e-24 Score=193.42 Aligned_cols=124 Identities=24% Similarity=0.459 Sum_probs=107.7
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (373)
.+.....+||+++|++|||||||+++|+.+.|...+.+|++ ++....+..++..+.
T Consensus 3 ~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~----------------------- 59 (215)
T PTZ00132 3 QMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPIC----------------------- 59 (215)
T ss_pred cccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEE-----------------------
Confidence 35677789999999999999999999999999999999988 555555555555555
Q ss_pred ceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHh
Q psy16673 83 DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRL 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~ 162 (373)
+++||++|++.|..++..
T Consensus 60 --------------------------------------------------------------i~~~Dt~g~~~~~~~~~~ 77 (215)
T PTZ00132 60 --------------------------------------------------------------FNVWDTAGQEKFGGLRDG 77 (215)
T ss_pred --------------------------------------------------------------EEEEECCCchhhhhhhHH
Confidence 999999999999999999
Q ss_pred hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 163 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 163 ~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+++++++|||+++..+|..+..|+..+.... .++|++++|||.|+.+
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC---ENIPIVLVGNKVDVKD 127 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccCcc
Confidence 9999999999999999999999999999988764 5789999999999853
No 104
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=1.4e-24 Score=190.13 Aligned_cols=120 Identities=20% Similarity=0.359 Sum_probs=96.0
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
+.+||+++|++|||||||+++++.+.|... .||.+ +.....+... +..+.
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~--------------------------- 53 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGIT--------------------------- 53 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceE---------------------------
Confidence 468999999999999999999998888754 56654 3333333221 12223
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..++..++++
T Consensus 54 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 75 (183)
T cd04152 54 ----------------------------------------------------------FHFWDVGGQEKLRPLWKSYTRC 75 (183)
T ss_pred ----------------------------------------------------------EEEEECCCcHhHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+++.+..|+.++..... ....|+++|+||+|+..
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPN 123 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccc
Confidence 9999999999999999999999888876542 24689999999999863
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.92 E-value=4.6e-25 Score=189.82 Aligned_cols=112 Identities=15% Similarity=0.285 Sum_probs=94.5
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+++|++|||||||+++|+++.|...+.||++-.+ ..++...+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~--------------------------------- 45 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAI--------------------------------- 45 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeE---------------------------------
Confidence 79999999999999999999989888888876211 122222222
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+||++|+++|..++..+++++|++++
T Consensus 46 ----------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 46 ----------------------------------------------------MELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred ----------------------------------------------------EEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 9999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 173 VYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 173 v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|||.+++.+|..++.|+..+.... +++|+++||||.|+..
T Consensus 74 V~D~t~~~s~~~~~~~l~~~~~~~---~~~piilv~NK~Dl~~ 113 (164)
T cd04162 74 VVDSADSERLPLARQELHQLLQHP---PDLPLVVLANKQDLPA 113 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHhCC---CCCcEEEEEeCcCCcC
Confidence 999999999999999988876432 6899999999999875
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.92 E-value=6.5e-25 Score=187.92 Aligned_cols=115 Identities=15% Similarity=0.270 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||++++..+.|.. +.||++..+. .+.. ..+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~-~~~~--~~~~------------------------------- 45 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVEY--KNIS------------------------------- 45 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceE-EEEE--CCEE-------------------------------
Confidence 489999999999999999999888874 6777762221 1111 1222
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+.+||++|+++|..++..+++++|++
T Consensus 46 ------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~ad~~ 71 (159)
T cd04150 46 ------------------------------------------------------FTVWDVGGQDKIRPLWRHYFQNTQGL 71 (159)
T ss_pred ------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+..|+..+.... ....+|++++|||+|+.+
T Consensus 72 i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 72 IFVVDSNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPN 115 (159)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCC
Confidence 99999999999999988777665332 124689999999999864
No 107
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=2.9e-24 Score=213.03 Aligned_cols=191 Identities=16% Similarity=0.094 Sum_probs=128.4
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHH--HHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~--~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.+. +......++..+|++++|+|..+..+.. .+..|+. + ...|+++|+||+|+.
T Consensus 51 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~-----~~~piilv~NK~D~~ 122 (435)
T PRK00093 51 FILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---K-----SNKPVILVVNKVDGP 122 (435)
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---H-----cCCcEEEEEECccCc
Confidence 89999999886 2333455678999999999998754333 2333432 2 268899999999964
Q ss_pred c------------------------------------------------------------------------ccc----
Q psy16673 215 S------------------------------------------------------------------------HHR---- 218 (373)
Q Consensus 215 ~------------------------------------------------------------------------~~r---- 218 (373)
+ ..+
T Consensus 123 ~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~ 202 (435)
T PRK00093 123 DEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVS 202 (435)
T ss_pred cchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeec
Confidence 3 000
Q ss_pred --------------ccccccceeeeccCCCCCc----------hhhh-hccccccEEEEEEecCCccchhhHHHHHHHHH
Q psy16673 219 --------------AVHLEDVDILDTCGDLQFP----------AMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 273 (373)
Q Consensus 219 --------------~~~~~~~~~~dtag~~~~~----------~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~ 273 (373)
......+.++||+|..... .++. .+++.+|++++|+|++++.+.++..- ...+.
T Consensus 203 ~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~ 281 (435)
T PRK00093 203 DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI-AGLAL 281 (435)
T ss_pred CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHH
Confidence 0011125788999964432 2233 36789999999999999988876643 22222
Q ss_pred hhccCCCCCchhhccccccceeeeeccccccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 274 EQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 274 ~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+ .+.| +++|+||||+.+.. .+..+....+.....+|+++|||++|.|++++|+.+.+.+..
T Consensus 282 ~----~~~~------------~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 282 E----AGRA------------LVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred H----cCCc------------EEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2 2234 55999999986432 233333344444556899999999999999999999998776
Q ss_pred hccCCCcccc
Q psy16673 351 LTTNGDENSL 360 (373)
Q Consensus 351 ~~~~~~~~~~ 360 (373)
..++..+..+
T Consensus 346 ~~~~i~t~~l 355 (435)
T PRK00093 346 ANRRISTSVL 355 (435)
T ss_pred HcCcCChHHH
Confidence 6665555443
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.92 E-value=2e-24 Score=186.06 Aligned_cols=116 Identities=25% Similarity=0.415 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
+||+++|++|||||||+++|..+.|+..+.++. +.++....+.+..+.
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------------------- 48 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVP------------------------------- 48 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEE-------------------------------
Confidence 489999999999999999999999977644433 333333344444444
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeE
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAF 170 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~ 170 (373)
+++|||+|++.+...+..++.++|++
T Consensus 49 ------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 49 ------------------------------------------------------TTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred ------------------------------------------------------EEEEeCCCchhhhHHHhhhcccCCEE
Confidence 99999999998888878888999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 171 LLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 171 i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|||++++.+|+.+. .|+..++... ..+|+++||||+|+.+
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRD 117 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 9999999999999986 5888887654 4799999999999975
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=3.3e-24 Score=182.49 Aligned_cols=118 Identities=44% Similarity=0.727 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeec
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 91 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (373)
||+++|++|||||||+++++.+.+...+.++..+.+.+.+..++..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYT-------------------------------- 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEE--------------------------------
Confidence 699999999999999999998889888888888666666666655555
Q ss_pred cccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEE
Q psy16673 92 LPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFL 171 (373)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i 171 (373)
+++||++|++.+..+...++..+++++
T Consensus 49 -----------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~~~~i 75 (160)
T cd00876 49 -----------------------------------------------------LDILDTAGQEEFSAMRDLYIRQGDGFI 75 (160)
T ss_pred -----------------------------------------------------EEEEECCChHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 172 LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 172 ~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|||++++.++..+..|+..+...... ...|+++++||+|+..
T Consensus 76 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 76 LVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLEN 118 (160)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccc
Confidence 999999999999999999888876521 4688888888888764
No 110
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.92 E-value=1.8e-24 Score=188.17 Aligned_cols=118 Identities=15% Similarity=0.271 Sum_probs=94.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|..+.|. .+.||++-.+. .+.. ..+.
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~---------------------------- 58 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNIS---------------------------- 58 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEE----------------------------
Confidence 45689999999999999999999888775 35666652211 1111 1122
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..+++++
T Consensus 59 ---------------------------------------------------------l~l~D~~G~~~~~~~~~~~~~~a 81 (175)
T smart00177 59 ---------------------------------------------------------FTVWDVGGQDKIRPLWRHYYTNT 81 (175)
T ss_pred ---------------------------------------------------------EEEEECCCChhhHHHHHHHhCCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++|||++++.+++.+..|+..+.... ..+++|++|+|||.|+.+
T Consensus 82 d~ii~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPD 128 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCccc
Confidence 99999999999999999988887775432 125789999999999864
No 111
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=2.4e-24 Score=190.96 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=88.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||+++|+.+.|...+.+|++ ++..+.+.++.....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~------------------------------ 50 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPE------------------------------ 50 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCC------------------------------
Confidence 4899999999999999999999999999999988 454455544321100
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+..+.+++||++|+++|..++..+|+++++
T Consensus 51 --------------------------------------------------~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 51 --------------------------------------------------EKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred --------------------------------------------------CcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 112339999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
+++|||++++.||+++..|+.++.+.
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNK 106 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999764
No 112
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=2.7e-24 Score=188.08 Aligned_cols=118 Identities=14% Similarity=0.256 Sum_probs=93.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|..+.|.. +.||++..+. .+. ...+.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~-~~~--~~~~~---------------------------- 62 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE-TVE--YKNIS---------------------------- 62 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEE-EEE--ECCEE----------------------------
Confidence 456899999999999999999999888864 5677762221 111 11222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++.+..++..+++++
T Consensus 63 ---------------------------------------------------------~~i~D~~Gq~~~~~~~~~~~~~a 85 (181)
T PLN00223 63 ---------------------------------------------------------FTVWDVGGQDKIRPLWRHYFQNT 85 (181)
T ss_pred ---------------------------------------------------------EEEEECCCCHHHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+++.+..|+..+.... ..+++|++++|||+|+.+
T Consensus 86 ~~iI~V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~ 132 (181)
T PLN00223 86 QGLIFVVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPN 132 (181)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCC
Confidence 99999999999999998887776654321 125789999999999875
No 113
>KOG4252|consensus
Probab=99.92 E-value=1.8e-25 Score=185.59 Aligned_cols=161 Identities=25% Similarity=0.412 Sum_probs=144.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
-+|++|+|..+|||||++.||+.+.|...|..|++ |+..+.+.+....+.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr----------------------------- 70 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVR----------------------------- 70 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHH-----------------------------
Confidence 68999999999999999999999999999999999 888888877766555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+++|.++...||++|.
T Consensus 71 --------------------------------------------------------~mlWdtagqeEfDaItkAyyrgaq 94 (246)
T KOG4252|consen 71 --------------------------------------------------------SMLWDTAGQEEFDAITKAYYRGAQ 94 (246)
T ss_pred --------------------------------------------------------HHHHHhccchhHHHHHHHHhcccc
Confidence 889999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
+.++||+.++..||+.+..|++.+.+-. ..||.++|-||+|+.++
T Consensus 95 a~vLVFSTTDr~SFea~~~w~~kv~~e~---~~IPtV~vqNKIDlved-------------------------------- 139 (246)
T KOG4252|consen 95 ASVLVFSTTDRYSFEATLEWYNKVQKET---ERIPTVFVQNKIDLVED-------------------------------- 139 (246)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHHh---ccCCeEEeeccchhhHh--------------------------------
Confidence 9999999999999999999999998876 68999999999998752
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+++..+.+.+++.+.+.++-
T Consensus 140 -----------------------------------------------------------s~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 140 -----------------------------------------------------------SQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred -----------------------------------------------------------hhcchHHHHHHHHHhhhhhhh
Confidence 223556778889999999999
Q ss_pred eccCCCcCHHHHHHHHHHHhh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++...||.++|.-+++...
T Consensus 161 tSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 161 TSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999998663
No 114
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.92 E-value=1e-23 Score=178.40 Aligned_cols=117 Identities=33% Similarity=0.643 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
+||+++|++|||||||++++..+.+...+.++.+ +...+.+..++..+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------------ 50 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVK------------------------------ 50 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEE------------------------------
Confidence 5899999999999999999999999888777777 555566665555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..+...+++++|+
T Consensus 51 -------------------------------------------------------~~l~D~~g~~~~~~~~~~~~~~~d~ 75 (159)
T cd00154 51 -------------------------------------------------------LQIWDTAGQERFRSITPSYYRGAHG 75 (159)
T ss_pred -------------------------------------------------------EEEEecCChHHHHHHHHHHhcCCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+++|||++++.+++.+..|+..+..... ...|+++++||+|+.
T Consensus 76 ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 76 AILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 9999999999999999999998887642 468899999999985
No 115
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=3.8e-24 Score=187.29 Aligned_cols=118 Identities=15% Similarity=0.273 Sum_probs=93.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||++++..+.|.. +.||++..+. .+. ...+.
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~--~~~~~---------------------------- 62 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVE--YKNLK---------------------------- 62 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEE--ECCEE----------------------------
Confidence 446899999999999999999999888865 5667662221 111 11222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..+++++
T Consensus 63 ---------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~a 85 (182)
T PTZ00133 63 ---------------------------------------------------------FTMWDVGGQDKLRPLWRHYYQNT 85 (182)
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ...++|++|+|||.|+.+
T Consensus 86 d~iI~v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 86 NGLIFVVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPN 132 (182)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCC
Confidence 99999999999999999887776664321 124689999999999864
No 116
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.91 E-value=5.6e-24 Score=183.89 Aligned_cols=70 Identities=11% Similarity=0.281 Sum_probs=61.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++++...+..+++++|++++|||.+++.+|+.+..|+..+.+.. ...+.|++++|||+|+..
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG 114 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc
Confidence 8999999999999999999999999999999999999999999988886542 124589999999999863
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.91 E-value=1.2e-23 Score=182.51 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=61.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.++|++++|||++++.+|+.+..|+..+.... ...++|++++|||+|+.+
T Consensus 60 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 60 LNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPG 129 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECccccc
Confidence 8999999999999999999999999999999999999999988887775432 225799999999999864
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.90 E-value=8.2e-23 Score=213.10 Aligned_cols=300 Identities=16% Similarity=0.085 Sum_probs=172.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceec--ceeeeeeecceEEeeeeeEEe-ccCC----------ccch
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED--LYSRDFHVGAVTIKEIPIVVA-GNKS----------DMTS 74 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d--~~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~ 74 (373)
+...+|+|+|++|||||||+|+|++..+ +.+.+ ..|++.......+.+.+|.++ ..+. ...+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~ 347 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQ 347 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHH
Confidence 3456899999999999999999995532 22222 234444444445555566544 1111 1233
Q ss_pred hhhcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccc
Q psy16673 75 HHRAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTC 151 (373)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~ 151 (373)
+...++++|+++|++|.... .+.......+..++|+++|+||+|+...... ..+. |
T Consensus 348 ~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~--~~~~--~----------------- 406 (712)
T PRK09518 348 AQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD--AAEF--W----------------- 406 (712)
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh--HHHH--H-----------------
Confidence 34468999999999996432 2334445556789999999999996421100 0000 0
Q ss_pred cccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHH-HHHHhc------cCCCccEEEecc----cccccc-----
Q psy16673 152 GDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE-IREQRQ------DFQEIPIVVAGN----KSDMTS----- 215 (373)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~-i~~~~~------~~~~~pi~ivgn----K~Dl~~----- 215 (373)
..+.... +..+.........+..|+-. +..... ....+.++++|. |+.+.+
T Consensus 407 ------------~lg~~~~-~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 407 ------------KLGLGEP-YPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred ------------HcCCCCe-EEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 0011111 12233333333333222211 110000 011234555554 333332
Q ss_pred -----------------cccccccccceeeeccCCC----------CCchhhh-hccccccEEEEEEecCCccchhhHHH
Q psy16673 216 -----------------HHRAVHLEDVDILDTCGDL----------QFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKC 267 (373)
Q Consensus 216 -----------------~~r~~~~~~~~~~dtag~~----------~~~~~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~ 267 (373)
....+....+.++||+|.. .|..++. .+++.++++++|+|++++.++++..-
T Consensus 474 ~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i 553 (712)
T PRK09518 474 ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV 553 (712)
T ss_pred cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH
Confidence 1122334456789999964 2333433 34789999999999999999988754
Q ss_pred HHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhh---hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 268 YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK---CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 268 ~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~---~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i 344 (373)
+ ..+.+ .++| +++|+||||+.+..... ......+.....++++++||++|.||+++|+.+
T Consensus 554 ~-~~~~~----~~~p------------iIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i 616 (712)
T PRK09518 554 M-SMAVD----AGRA------------LVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAM 616 (712)
T ss_pred H-HHHHH----cCCC------------EEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 3 33322 2344 55999999996532211 111111222234678999999999999999999
Q ss_pred HHHhhhhccCCCccccccc
Q psy16673 345 LTLSQILTTNGDENSLKRR 363 (373)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~ 363 (373)
.+.+....++..+..+++-
T Consensus 617 ~~~~~~~~~~i~T~~Ln~~ 635 (712)
T PRK09518 617 QEALESWDQRIPTGKLNAF 635 (712)
T ss_pred HHHHHHhcccCChHHHHHH
Confidence 9988877777777665543
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=4.3e-23 Score=179.23 Aligned_cols=118 Identities=19% Similarity=0.273 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++++.+.|.. +.||++..+. .+.++ .+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~----------------------------- 59 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NI----------------------------- 59 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEEC--Ce-----------------------------
Confidence 457899999999999999999999888875 4566653221 11111 12
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
.+.+||++|++.+...+..++.++
T Consensus 60 --------------------------------------------------------~~~l~D~~G~~~~~~~~~~~~~~~ 83 (174)
T cd04153 60 --------------------------------------------------------RFLMWDIGGQESLRSSWNTYYTNT 83 (174)
T ss_pred --------------------------------------------------------EEEEEECCCCHHHHHHHHHHhhcC
Confidence 299999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.++..+..|+..+.+.. ....+|+++++||+|+..
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKG 130 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCC
Confidence 99999999999999988888777665432 124689999999999864
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=3.7e-23 Score=176.74 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=61.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+++|..++..++.+++++++|||++++.+|..+..|+..+.+... ....+|+++|+||+|+.+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 89999999999999999999999999999999999999999888887765321 124799999999999864
No 121
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.89 E-value=7.9e-23 Score=174.52 Aligned_cols=70 Identities=13% Similarity=0.303 Sum_probs=61.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+...+..++.++|++++|||..++.++..+..|+.++.+.. ...++|+++|+||+|+..
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPG 115 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECccccc
Confidence 9999999999999999999999999999999999999999988887775432 124799999999999863
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.89 E-value=1.7e-22 Score=172.36 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||++|++.|..++..++..++++++|||++++.++.....|+..+.+.. .....|+++++||+|+.+
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPG 114 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCC
Confidence 9999999999999999999999999999999999988887766555443221 124689999999999864
No 123
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=5.7e-22 Score=172.40 Aligned_cols=111 Identities=25% Similarity=0.364 Sum_probs=94.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~ 224 (373)
+.+|||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 31 l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~--~~~piilVgNK~DL~~~-------- 100 (176)
T PTZ00099 31 LQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG--KDVIIALVGNKTDLGDL-------- 100 (176)
T ss_pred EEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECcccccc--------
Confidence 99999999999999999999999999999999999999999999999876542 46888899999998631
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
T Consensus 101 -------------------------------------------------------------------------------- 100 (176)
T PTZ00099 101 -------------------------------------------------------------------------------- 100 (176)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+..+++..++..+++.|+||||++|.||+++|+.|++.+
T Consensus 101 ---~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 101 ---RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ---cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 11233345566677788999999999999999999999865
No 124
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=1.1e-21 Score=172.64 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=60.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|+++..+|+....|+..+.... ...+.|+++++||+|+..
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG 134 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC
Confidence 8899999999999888999999999999999999999998888888876543 225689999999999863
No 125
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.88 E-value=4.6e-22 Score=171.63 Aligned_cols=70 Identities=27% Similarity=0.339 Sum_probs=62.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||++|++++..++..++.+++++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKN 114 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcC
Confidence 9999999999999999999999999999999999999999999998887542 224789999999999975
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=1.1e-21 Score=167.28 Aligned_cols=70 Identities=13% Similarity=0.317 Sum_probs=62.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.++|++++|||++++.++..+..|+..+..... ....|+++++||+|+..
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 45 FTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred EEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 99999999999999999999999999999999999999999888887766432 35789999999999874
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=1e-21 Score=168.90 Aligned_cols=70 Identities=21% Similarity=0.388 Sum_probs=61.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|.+++.++..+..|+..+.+.. ....+|+++++||+|+..
T Consensus 52 ~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 52 LKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNE-ALEGVPLLILANKQDLPD 121 (167)
T ss_pred EEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEEcccccc
Confidence 8999999999999999999999999999999999999999888887776532 125799999999999864
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=4.9e-22 Score=184.89 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=106.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|+.|||||||+++|+.+.|...+.+|++ +++.+.+.+++.......
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~------------------------ 74 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNS------------------------ 74 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCccccccc------------------------
Confidence 3468999999999999999999999999999999998 555565655421000000
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
.| ......+.++||||+|++.|..++..++++
T Consensus 75 ----------------------------ik--------------------~d~~k~v~LqIWDTAGqErfrsL~~~yyr~ 106 (334)
T PLN00023 75 ----------------------------IK--------------------GDSERDFFVELWDVSGHERYKDCRSLFYSQ 106 (334)
T ss_pred ----------------------------cc--------------------ccCCceEEEEEEECCCChhhhhhhHHhccC
Confidence 00 001122449999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc----------CCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQD----------FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~----------~~~~pi~ivgnK~Dl~~ 215 (373)
++++|+|||++++.+|+++..|++++...... ...+|++|||||+||..
T Consensus 107 AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 107 INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 99999999999999999999999999876421 13589999999999975
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=6e-21 Score=161.56 Aligned_cols=114 Identities=20% Similarity=0.338 Sum_probs=92.4
Q ss_pred EEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeeecc
Q psy16673 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCEL 92 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
|+++|++|||||||++++.+..|...+.|+++-.+.+ +..+ .+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~--------------------------------- 45 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKG--NVT--------------------------------- 45 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEEC--CEE---------------------------------
Confidence 8999999999999999999999988888877622211 1111 123
Q ss_pred ccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCeEEE
Q psy16673 93 PKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLL 172 (373)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 172 (373)
+.+||++|+..+..++..++..+|++++
T Consensus 46 ----------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 46 ----------------------------------------------------LKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred ----------------------------------------------------EEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 8999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 173 VYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 173 v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|+|+++..++.....|+..+.... ....+|+++|+||+|+.+
T Consensus 74 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 74 VVDAADRTALEAAKNELHDLLEKP-SLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred EEECCCHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence 999999999988887777665432 125789999999999864
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.85 E-value=2.3e-20 Score=162.30 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=55.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+|||+|+++|......++.++|++++|||+++..+++.+..|..... ..+|+++|+||+|+.+
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 67 YLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPS 133 (179)
T ss_pred EEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCc
Confidence 338999999999999999999999999999999999877777766653321 4688999999999853
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.85 E-value=2.7e-20 Score=167.39 Aligned_cols=119 Identities=28% Similarity=0.488 Sum_probs=102.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|..+.|...+.+++. ++...........+.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----------------------------- 55 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIK----------------------------- 55 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEE-----------------------------
Confidence 38999999999999999999999999999999977 455555544444444
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|+++|..++..|+.+++
T Consensus 56 --------------------------------------------------------~~~~Dt~gq~~~~~~~~~y~~~~~ 79 (219)
T COG1100 56 --------------------------------------------------------LQLWDTAGQEEYRSLRPEYYRGAN 79 (219)
T ss_pred --------------------------------------------------------EEeecCCCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCC-hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTC-LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~-~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||.++ ..+++....|..++..... ...|+++||||+|+..
T Consensus 80 ~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 80 GILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred EEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 9999999999 6666677789999888753 4699999999999986
No 132
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=8.4e-20 Score=160.06 Aligned_cols=70 Identities=16% Similarity=0.258 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++.+..++..++.+++++++|+|++++.+++....|+..+.+.. ....+|+++++||.|+..
T Consensus 63 ~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 63 FTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC
Confidence 8899999999999999999999999999999999999999888877765432 125789999999999863
No 133
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.83 E-value=5.7e-20 Score=158.28 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=54.4
Q ss_pred eeeecccccc----chhHhHHhhh---hhcCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL----QFPAMRRLSI---ATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~----~~~~~~~~~~---~~~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .+..+...++ ..+|++++|+|++++ .+++.+..|.+++..........|+++|+||+|+.+
T Consensus 50 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 50 FVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred EEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 9999999963 2223334443 459999999999999 899999999999887643334688889999999864
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.83 E-value=8.2e-20 Score=157.10 Aligned_cols=67 Identities=24% Similarity=0.326 Sum_probs=47.1
Q ss_pred eeeeccccccch----------hHhHHhhhhhcCeEEEEEeCCChhhH--HHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQF----------PAMRRLSIATAHAFLLVYSTTCLESF--QSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~----------~~~~~~~~~~~~~~i~v~dv~~~~s~--~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+... ..+. ......|++++|+|+++..++ +....|+..+.... ...|+++|+||.|
T Consensus 49 ~~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~D 124 (168)
T cd01897 49 WQVIDTPGLLDRPLEERNTIEMQAIT-ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKID 124 (168)
T ss_pred EEEEECCCcCCccccCCchHHHHHHH-HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccc
Confidence 999999997421 1111 111236899999999987654 55667888776543 4789999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+.+
T Consensus 125 l~~ 127 (168)
T cd01897 125 LLT 127 (168)
T ss_pred cCc
Confidence 864
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.83 E-value=1.1e-19 Score=157.23 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=59.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+..+...+..++.+++++++|||+.+..++.....|+..+.... ....+|+++++||+|+..
T Consensus 60 ~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 60 LNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLAT 129 (173)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCcc
Confidence 8899999999998888888999999999999999999988887776665432 124699999999999864
No 136
>KOG0096|consensus
Probab=99.83 E-value=1.5e-20 Score=158.07 Aligned_cols=120 Identities=23% Similarity=0.451 Sum_probs=105.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+|++++|+.|.|||++.+|++.+.|...|.+|++ +.......-+...+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~ir--------------------------- 60 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIR--------------------------- 60 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEE---------------------------
Confidence 4589999999999999999999999999999999998 443333332333344
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+..|||+|+|.+..++.-||-+
T Consensus 61 ----------------------------------------------------------f~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 61 ----------------------------------------------------------FNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred ----------------------------------------------------------EEeeecccceeecccccccEEe
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+++||++..-++.++..|..++.+.+ .++||+++|||.|...
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~rv~---~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLVRVR---ENIPIVLCGNKVDIKA 128 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHHHHh---cCCCeeeeccceeccc
Confidence 999999999999999999999999999988 5799999999999875
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=3e-20 Score=155.56 Aligned_cols=60 Identities=25% Similarity=0.222 Sum_probs=42.6
Q ss_pred eeeecccccc-----chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDL-----QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~-----~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..+|||+|+. .|..+.. .++++|++++|||++++.++.. ..|.+.+ ..|+++|+||+|+.
T Consensus 37 ~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~--------~~p~ilv~NK~Dl~ 101 (142)
T TIGR02528 37 DGAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF--------VKPVIGLVTKIDLA 101 (142)
T ss_pred CeeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc--------cCCeEEEEEeeccC
Confidence 3579999972 3444444 4789999999999999988765 3443321 13888888888875
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.82 E-value=1.9e-19 Score=153.73 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=46.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++.++|++++|+|+++ ..+++.+. .+... ...|+++++||+|+.+
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~----~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL----GIKRGLVVLTKADLVD 118 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh----CCCcEEEEEECccccC
Confidence 8999999999998777778899999999999987 33443332 12211 2248899999999864
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=4.2e-19 Score=149.49 Aligned_cols=119 Identities=29% Similarity=0.482 Sum_probs=94.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|.+|+|||||+++++...++..+.+++. +.....+..++..+.
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 51 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYK----------------------------- 51 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEE-----------------------------
Confidence 37999999999999999999998887777666655 333333444443344
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|+.++..+...++..++
T Consensus 52 --------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~~ 75 (161)
T TIGR00231 52 --------------------------------------------------------FNLLDTAGQEDYRAIRRLYYRAVE 75 (161)
T ss_pred --------------------------------------------------------EEEEECCCcccchHHHHHHHhhhh
Confidence 899999999999999999899999
Q ss_pred eEEEEEeCCCh-hhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 169 AFLLVYSTTCL-ESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 169 ~~i~v~dv~~~-~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++.++|+... .++.... .|...+..... ...|+++++||.|+..
T Consensus 76 ~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 76 SSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPIILVGNKIDLRD 122 (161)
T ss_pred EEEEEEEEeeeehhhhhHhHHHHHHHHHhcc--cCCcEEEEEEcccCCc
Confidence 99999999887 7777765 67777776652 2788999999999864
No 140
>KOG1673|consensus
Probab=99.82 E-value=5.8e-20 Score=149.46 Aligned_cols=168 Identities=18% Similarity=0.377 Sum_probs=140.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
++.-.+||.++||+.+|||||+-.|+++.+.+++..+.+ .+..+++.+.+..+.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~Is------------------------- 70 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDIS------------------------- 70 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEE-------------------------
Confidence 455689999999999999999999999999888888888 778899999999888
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.|||.+|++++....+...
T Consensus 71 ------------------------------------------------------------fSIwdlgG~~~~~n~lPiac 90 (205)
T KOG1673|consen 71 ------------------------------------------------------------FSIWDLGGQREFINMLPIAC 90 (205)
T ss_pred ------------------------------------------------------------EEEEecCCcHhhhccCceee
Confidence 99999999999998888888
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++-+++++||++.+.++.++.+|+.+.+..+ ....-++||||.|+.-. .+
T Consensus 91 ~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N---ktAiPilvGTKyD~fi~---lp----------------------- 141 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRRSTLNSIKEWYRQARGLN---KTAIPILVGTKYDLFID---LP----------------------- 141 (205)
T ss_pred cCcEEEEEEEecCchHHHHHHHHHHHHHhccC---CccceEEeccchHhhhc---CC-----------------------
Confidence 99999999999999999999999999988775 33344688999997520 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.++.+. -...++.+|+..++
T Consensus 142 -------------------------~e~Q~~-----------------------------------I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 142 -------------------------PELQET-----------------------------------ISRQARKYAKVMNA 161 (205)
T ss_pred -------------------------HHHHHH-----------------------------------HHHHHHHHHHHhCC
Confidence 011110 12357888999999
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.|+||+..+.||+++|..++..
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHH
Confidence 99999999999999999988763
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=2e-19 Score=159.65 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceec
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRS 41 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~ 41 (373)
++...++|+++|++|||||||+|+++++.+...+.|
T Consensus 5 ~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~ 40 (201)
T PRK04213 5 RPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP 40 (201)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC
Confidence 344578999999999999999999997766544444
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.80 E-value=9.9e-19 Score=155.67 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=52.0
Q ss_pred eeeeccccccc---------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ---------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~---------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|... |.... ..+..+|++++|+|++++.++..+..|.+.+..... ..+|+++|+||+|+..
T Consensus 91 ~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~--~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 91 VLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA--EDIPMILVLNKIDLLD 167 (204)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc--CCCCEEEEEEccccCC
Confidence 88999999732 11111 235689999999999999999888888877765532 4689999999999875
No 143
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.4e-18 Score=165.32 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=55.4
Q ss_pred eeeeccccccc----hhHhHHhh---hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLS---IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~---~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|..+ ...+...+ +..++++++|+|+++..+++.++.|.+++..+.......|+++|+||+|+.+
T Consensus 208 ~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 208 FVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred EEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 89999999632 22344444 4468999999999998899999999999988754334688999999999864
No 144
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.79 E-value=7e-19 Score=142.69 Aligned_cols=68 Identities=28% Similarity=0.450 Sum_probs=56.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+||++|++.+...+..++..+|++++|||++++.+|+.+..|+..+........++|+++||||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 89999999998888777779999999999999999999998766555555443336799999999998
No 145
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.79 E-value=2.8e-18 Score=149.22 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||.+|+..++.++..|+.+++++|+|.|.++...+......+..+.... ....+|++|++||.|+.+
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPD 129 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTT
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchh-hcccceEEEEeccccccC
Confidence 8999999999999999999999999999999999988888777766665533 235799999999999875
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=7.2e-18 Score=144.78 Aligned_cols=65 Identities=23% Similarity=0.299 Sum_probs=49.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++....+.... +..+.. ...|+++|+||+|+..
T Consensus 52 ~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 52 ITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEA-IKLAKA-----ANVPFIVALNKIDKPN 116 (168)
T ss_pred EEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHH-HHHHHH-----cCCCEEEEEEceeccc
Confidence 8999999999999998889999999999999987432222111 122222 4689999999999863
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.77 E-value=7.9e-18 Score=159.97 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=54.7
Q ss_pred eeeeccccccc----hhHhHHhhhh---hcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIA---TAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~---~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|..+ ...+...+++ .++++++|+|+++. .+++.+..|.+++..+.......|+++|+||+|+.
T Consensus 207 ~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~ 286 (329)
T TIGR02729 207 FVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLL 286 (329)
T ss_pred EEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCC
Confidence 89999999743 2245555555 58999999999987 78888989998888765333567888888999886
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 287 ~ 287 (329)
T TIGR02729 287 D 287 (329)
T ss_pred C
Confidence 4
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.76 E-value=1.5e-17 Score=146.88 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++++|++++|||+++.. +.....|+..+.. ..+|+++|+||+|+..
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-----LGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 999999999999999999999999999999998742 3333344444332 3689999999999864
No 149
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.76 E-value=1.1e-17 Score=160.26 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=52.0
Q ss_pred eeeecccccc---------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL---------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~---------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .|.... ..+.++|++++|+|++++.+++.+..|.+.+..... .+.|+++|+||+|+.+
T Consensus 239 i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~--~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 239 VLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA--EDIPQLLVYNKIDLLD 315 (351)
T ss_pred EEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc--CCCCEEEEEEeecCCC
Confidence 8899999972 222222 247789999999999999988888777776665531 4689999999999864
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.76 E-value=8.1e-18 Score=165.79 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=49.7
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.. ....++..+|++++|||++++.+++.. |+..+.. ...|+++|+||+|+..
T Consensus 253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-----~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK-----SKKPFILVLNKIDLKI 324 (442)
T ss_pred EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh-----CCCCEEEEEECccCCC
Confidence 88999999865432 234578899999999999998888775 7665542 3678999999999853
No 151
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=1.5e-17 Score=141.24 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=46.3
Q ss_pred eeeeccccccchhH------hHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+.. +...++. .+|++++|+|..+.... ..|...+.+ ...|+++++||.|+.+
T Consensus 45 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~-----~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 45 IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE-----LGLPVVVALNMIDEAE 115 (158)
T ss_pred EEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH-----cCCCEEEEEehhhhcc
Confidence 89999999887653 4556664 89999999999875432 234444433 3578999999999864
No 152
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.6e-17 Score=160.48 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=53.3
Q ss_pred eeeeccccccc----hhHhHHhhhhh---cCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIAT---AHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~~---~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|... ...+...|+++ ++++++|+|+++. ..++.+..|.+++..+.......|+++|+||+|+.
T Consensus 208 ~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 208 FVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 89999999642 33455555554 8999999999865 67888888999888775433467888888998874
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=5.9e-17 Score=155.00 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=43.3
Q ss_pred eeeeccccccc-hhHhH-------HhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-FPAMR-------RLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-~~~~~-------~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|... +..+. ...+.++|++++|+|..+ +|..+. .|++.+... ..|.++|+||+|+.+
T Consensus 102 i~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~~ 174 (339)
T PRK15494 102 VILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL-----NIVPIFLLNKIDIES 174 (339)
T ss_pred EEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCcc
Confidence 89999999843 33222 234678999999999654 555554 355555442 356678999999853
No 154
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.73 E-value=3.6e-17 Score=162.03 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=49.1
Q ss_pred eeeeccccccchhHh--------HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~--------~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..++... ...++..+|++++|||++++.+++....|.. ....|+++|+||+|+.+
T Consensus 265 i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 265 LRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--------LKDKPVIVVLNKADLTG 335 (449)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--------cCCCCcEEEEEhhhccc
Confidence 889999998765421 3346788999999999999988887655543 14689999999999864
No 155
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.73 E-value=9.4e-17 Score=142.89 Aligned_cols=71 Identities=15% Similarity=0.316 Sum_probs=58.4
Q ss_pred eeeeccccccchhHhHHhhhhhc-CeEEEEEeCCCh-hhHHHHHHHHHHHHHHh-ccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATA-HAFLLVYSTTCL-ESFQSVKCYFEEIREQR-QDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~-~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|++++......+++++ +++++|+|..+. .++..+..|+..+.... ...+.+|+++++||.|+..
T Consensus 50 ~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 50 FRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 89999999999998888899998 999999999997 67887777665553322 1125799999999999875
No 156
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.73 E-value=1.1e-16 Score=148.86 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred eeeeccccccch-hH-------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF-PA-------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~-~~-------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.... .. ....++.++|++++|+|+++..+++ ..+.+.+.. ...|+++|+||+|+.+
T Consensus 50 ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 50 IIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred EEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence 889999997532 11 2345678899999999999877664 334444433 3688999999999863
No 157
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=1.1e-16 Score=133.29 Aligned_cols=70 Identities=37% Similarity=0.578 Sum_probs=57.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|+..+......+++.++++++|+|++++.+++.+..|........ .....|+++++||+|+..
T Consensus 47 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 47 LQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINK-EGENIPIILVGNKIDLPE 116 (157)
T ss_pred EEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh-ccCCCcEEEEEecccccc
Confidence 9999999999888888888899999999999999999999888732222211 226799999999999875
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.73 E-value=5.4e-17 Score=140.30 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=51.3
Q ss_pred eeeeccccccch----hHh---HHhhhhhcCeEEEEEeCCCh------hhHHHHHHHHHHHHHHhcc-----CCCccEEE
Q psy16673 145 VDILDTCGDLQF----PAM---RRLSIATAHAFLLVYSTTCL------ESFQSVKCYFEEIREQRQD-----FQEIPIVV 206 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~---~~~~~~~~~~~i~v~dv~~~------~s~~~l~~~~~~i~~~~~~-----~~~~pi~i 206 (373)
+.+|||+|.... ..+ ...++.++|++++|+|..+. .+++.+..|..++...... ....|+++
T Consensus 46 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iv 125 (176)
T cd01881 46 IQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIY 125 (176)
T ss_pred EEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEE
Confidence 899999996321 122 23346789999999999988 5788888888877654311 13678888
Q ss_pred ecccccccc
Q psy16673 207 AGNKSDMTS 215 (373)
Q Consensus 207 vgnK~Dl~~ 215 (373)
|+||+|+..
T Consensus 126 v~NK~Dl~~ 134 (176)
T cd01881 126 VLNKIDLDD 134 (176)
T ss_pred EEEchhcCc
Confidence 888888864
No 159
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=2.4e-16 Score=137.72 Aligned_cols=65 Identities=26% Similarity=0.259 Sum_probs=52.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+......++..+|++++|+|..+..+.... .++..+.. ...|+++++||+|+..
T Consensus 64 ~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 64 VNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred EEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 89999999999988888899999999999999876654432 33333332 4789999999999974
No 160
>KOG3883|consensus
Probab=99.72 E-value=2.1e-16 Score=128.48 Aligned_cols=162 Identities=30% Similarity=0.420 Sum_probs=127.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccC--CceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYS--DRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~--~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
-.||+++|-.+||||+++.+++.+.-. .++.||++|.|--.+..+.. ..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg-arE--------------------------- 60 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG-ARE--------------------------- 60 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC-hhh---------------------------
Confidence 469999999999999999999855432 45788888888766665543 220
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccch-hHhHHhhhhh
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQF-PAMRRLSIAT 166 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~-~~~~~~~~~~ 166 (373)
.+.++||+|...+ ..+...|+.-
T Consensus 61 --------------------------------------------------------~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 61 --------------------------------------------------------QLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred --------------------------------------------------------eEEEeecccccCchhhhhHhHhcc
Confidence 1899999998887 6788899999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||..+++||+.+..+..+|.+.. +...+||++.|||+|+.
T Consensus 85 aDafVLVYs~~d~eSf~rv~llKk~Idk~K-dKKEvpiVVLaN~rdr~-------------------------------- 131 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRVELLKKEIDKHK-DKKEVPIVVLANKRDRA-------------------------------- 131 (198)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhhcc-ccccccEEEEechhhcc--------------------------------
Confidence 999999999999999999877666666543 22456666666666654
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+.|..+.++.||+.-.+..
T Consensus 132 -----------------------------------------------------------~p~~vd~d~A~~Wa~rEkvkl 152 (198)
T KOG3883|consen 132 -----------------------------------------------------------EPREVDMDVAQIWAKREKVKL 152 (198)
T ss_pred -----------------------------------------------------------cchhcCHHHHHHHHhhhheeE
Confidence 445566677888999899999
Q ss_pred EEeccCCCcCHHHHHHHHHHH
Q psy16673 327 LECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~ 347 (373)
+|++|.+...+-|.|..++..
T Consensus 153 ~eVta~dR~sL~epf~~l~~r 173 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASR 173 (198)
T ss_pred EEEEeccchhhhhHHHHHHHh
Confidence 999999999999999999874
No 161
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.72 E-value=7.1e-17 Score=137.96 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=40.7
Q ss_pred eecccccc-----chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 147 ILDTCGDL-----QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 147 i~D~~g~~-----~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+|||||.. .+..+ ...+.++|++++|+|+++..++. ..|+..+ . ...|+++++||+|+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~-~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~---~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHAL-ITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G---VSKRQIAVISKTDMP 104 (158)
T ss_pred cccCCccccCCHHHHHHH-HHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c---CCCCeEEEEEccccC
Confidence 69999972 22222 23468999999999999887663 3344332 1 356888999999975
No 162
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=1.6e-16 Score=161.93 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=56.7
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|...+. ..+|+++|+||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCc
Confidence 449999999999999999999999999999999999877777776654432 3678999999999863
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=2e-16 Score=133.91 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=45.7
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.. .....+..+|++++|+|..+..+..... +...+.. ...|+++|+||+|+.+
T Consensus 47 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~-----~~~piiiv~nK~D~~~ 119 (157)
T cd01894 47 FILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEE-IAKYLRK-----SKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHH-HHHHHHh-----cCCCEEEEEECcccCC
Confidence 89999999887543 3345678899999999998765444321 2222222 3588999999999874
No 164
>KOG0073|consensus
Probab=99.71 E-value=5.1e-16 Score=127.91 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=57.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+||...+..+..||..+||+|.|+|..++..++.....+.++..- .+....|++++.||.|+..
T Consensus 62 L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e-erlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 62 LNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE-ERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred EEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh-hhhcCCceEEEEecCcCcc
Confidence 999999999999999999999999999999999998888776544444321 1224578999999999874
No 165
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=2.2e-16 Score=133.55 Aligned_cols=63 Identities=25% Similarity=0.235 Sum_probs=48.4
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..++.. ....++..+|++++|+|+.++.+....+.|.. ....|+++|+||.|+.+
T Consensus 51 ~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 51 VRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLP 121 (157)
T ss_pred EEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCC
Confidence 88999999765532 23345678999999999998887777655433 15789999999999875
No 166
>PRK11058 GTPase HflX; Provisional
Probab=99.70 E-value=2.5e-16 Score=154.43 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeccccccch--hHhHH------hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF--PAMRR------LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~--~~~~~------~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.... ..+.. ..+..+|++++|+|++++.+++.+..|.+.+..... .++|+++|+||+|+..
T Consensus 247 ~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~--~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 247 TVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA--HEIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc--CCCCEEEEEEcccCCC
Confidence 789999997431 22222 235789999999999999988888766665555431 4689999999999863
No 167
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.70 E-value=4.2e-16 Score=160.47 Aligned_cols=62 Identities=26% Similarity=0.402 Sum_probs=50.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+.+. .+++.+.. +.. ..+|+++++||+|+.+
T Consensus 297 ItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k~-----~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 297 IVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQA-----ANVPIIVAINKIDKAN 361 (742)
T ss_pred EEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HHh-----cCceEEEEEECCCccc
Confidence 99999999999999999999999999999999874 44444332 221 4689999999999874
No 168
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.69 E-value=5.1e-16 Score=153.34 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.6
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
.++++|+|||+++.|++++++.|.+++...+..
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 367999999999999999999999988666543
No 169
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.69 E-value=1e-15 Score=131.49 Aligned_cols=65 Identities=25% Similarity=0.220 Sum_probs=45.0
Q ss_pred eeeeccccccch----------hHh-HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQF----------PAM-RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~----------~~~-~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.... ... ....+.++|++++|+|..++.+..... +...+.. ...|+++++||+|+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~~~iiv~nK~Dl 125 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLR-IAGLILE-----EGKALVIVVNKWDL 125 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh-----cCCCEEEEEecccc
Confidence 789999996433 111 123467899999999999987766543 2222222 35899999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 126 ~~ 127 (174)
T cd01895 126 VE 127 (174)
T ss_pred CC
Confidence 75
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=6.3e-16 Score=136.42 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~ 43 (373)
....++|+++|++|||||||+++++...|...+.++.
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~ 57 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTP 57 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCC
Confidence 4457899999999999999999999776655544444
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.69 E-value=5.9e-16 Score=157.14 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=49.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++...-+....| ..+.. ..+|+++++||+|+.+
T Consensus 137 i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~~~-----~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 137 ITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHAKA-----ANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHHHH-----cCCCEEEEEECccccc
Confidence 89999999999999999999999999999998874322222222 11111 4689999999999864
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.69 E-value=5.5e-16 Score=136.72 Aligned_cols=66 Identities=21% Similarity=0.178 Sum_probs=45.0
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+..+..........+|++++|+|..+.........|. +... ...|+++++||+|+..
T Consensus 69 ~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~----~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 69 QITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI----LCKKLIVVLNKIDLIP 134 (192)
T ss_pred eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH----cCCCEEEEEECcccCC
Confidence 3899999999765443334456689999999998754444433332 1111 2468999999999864
No 173
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.68 E-value=8.8e-16 Score=129.55 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i 344 (373)
.+.+++.+|+|++.+||++|+|++++++.|
T Consensus 127 ~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 127 AEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 466777789999999999999999999875
No 174
>KOG4423|consensus
Probab=99.68 E-value=6.4e-18 Score=141.78 Aligned_cols=102 Identities=24% Similarity=0.473 Sum_probs=88.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..-+|+.|+|+-+|||||++.|++...|...|++|++ |+--+-++.+..+
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t----------------------------- 73 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKT----------------------------- 73 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHH-----------------------------
Confidence 3468999999999999999999999999999999999 6644544444332
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
.+++++||.+||++|-.+...||+.
T Consensus 74 -------------------------------------------------------~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 74 -------------------------------------------------------IVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred -------------------------------------------------------HHHHHHhcchhhhhhcceEEEEecC
Confidence 2339999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHH
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIR 193 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~ 193 (373)
+++..+|||+++..+|+....|.+++.
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdld 125 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLD 125 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhcc
Confidence 999999999999999999999988764
No 175
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.68 E-value=3e-15 Score=135.92 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=38.1
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+.... +.+.++.. .+++++||++|.|++++|+.+.+...+.
T Consensus 179 ~iiV~NK~Dl~~~~-----~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~~i 228 (233)
T cd01896 179 CLYVYNKIDLISIE-----ELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLGLI 228 (233)
T ss_pred EEEEEECccCCCHH-----HHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhCcE
Confidence 55999999985433 33344443 4689999999999999999999866544
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=2e-15 Score=156.86 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=49.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|||+++. .+++.+. .+.. ..+|+++++||+|+.+
T Consensus 339 ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~~-----~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 339 ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAKA-----AGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHHh-----cCCcEEEEEECccccc
Confidence 89999999999999999999999999999999873 3443322 1111 4689999999999964
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.65 E-value=2.1e-15 Score=131.54 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=44.5
Q ss_pred eeeeccccc----------cchhHhHHhhhhh---cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGD----------LQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~~~~~~~---~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+|. +.|..+...+++. ++++++|+|..++-+...... +..+.. ...|+++++||.
T Consensus 66 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~-~~~~~~-----~~~pviiv~nK~ 139 (179)
T TIGR03598 66 FRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM-LEWLRE-----RGIPVLIVLTKA 139 (179)
T ss_pred EEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHH-HHHHHH-----cCCCEEEEEECc
Confidence 899999994 2344455556654 579999999987655555432 233322 368899999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 140 D~~~ 143 (179)
T TIGR03598 140 DKLK 143 (179)
T ss_pred ccCC
Confidence 9864
No 178
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.64 E-value=3.7e-15 Score=151.91 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=49.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+||++|+++|......++.++|++++|+|+++ +.+++.+.. +.. ..+| +++|+||+|+.+
T Consensus 52 v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~i----l~~-----lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 52 LGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAV----LDL-----LGIPHTIVVITKADRVN 117 (581)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHH----HHH-----cCCCeEEEEEECCCCCC
Confidence 8999999999998888888999999999999988 555555431 221 2466 999999999875
No 179
>KOG0070|consensus
Probab=99.63 E-value=2.5e-15 Score=127.01 Aligned_cols=120 Identities=18% Similarity=0.349 Sum_probs=93.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..++..+|+++|--|+||||++.++-.+.+... .||++ +++....+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG------fnVE~v~ykn------------------------- 60 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG------FNVETVEYKN------------------------- 60 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc------cceeEEEEcc-------------------------
Confidence 356789999999999999999999987777665 77776 1222222221
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++.+||.+||++++.++..|+.
T Consensus 61 ---------------------------------------------------------~~f~vWDvGGq~k~R~lW~~Y~~ 83 (181)
T KOG0070|consen 61 ---------------------------------------------------------ISFTVWDVGGQEKLRPLWKHYFQ 83 (181)
T ss_pred ---------------------------------------------------------eEEEEEecCCCcccccchhhhcc
Confidence 22999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++|+|.|.+++.-+...++-+..+.... +....|+.+.+||.|+.+
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPG 132 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccc
Confidence 9999999999999987777665444433322 235899999999999986
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=1e-14 Score=141.46 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred eeeeccccccch----hHhHH---hhhhhcCeEEEEEeCC---ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRR---LSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~---~~~~~~~~~i~v~dv~---~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++||||...- ..+.. .++..++++++|+|++ +...++.+..|++++..+.......|+++|.||+|+.
T Consensus 209 i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~ 288 (390)
T PRK12298 209 FVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL 288 (390)
T ss_pred EEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence 889999996431 11222 3467789999999988 5567888888888888765333467888999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 289 ~ 289 (390)
T PRK12298 289 D 289 (390)
T ss_pred C
Confidence 4
No 181
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.62 E-value=1.5e-14 Score=122.94 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred eeeeccccccchhH--------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~--------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|...... .....+..+|++++|+|.+++.+.. ...+...+.. ...|+++++||+|+.
T Consensus 53 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~-----~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKK-----SKTPVILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHH-----hCCCEEEEEEchhcc
Confidence 88999999754432 2344577899999999998872211 1223333332 257899999999986
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=3.9e-15 Score=151.89 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.3
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+++..|+++++|||++|.|++++|+.+.+.+
T Consensus 121 ~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 121 EEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3556677789999999999999999999998754
No 183
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.61 E-value=1.6e-14 Score=146.53 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..+++.+|++++|||+++ +.+++.+..+ .. ..+|+++++||+|+..
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH-----cCCCEEEEEECCCccc
Confidence 8899999999999999999999999999999987 5666655432 21 3689999999999974
No 184
>KOG1707|consensus
Probab=99.61 E-value=3.7e-15 Score=145.07 Aligned_cols=124 Identities=24% Similarity=0.389 Sum_probs=95.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+..+||+++|+.|||||||+..++.+.|++...+-.... +--..+....+.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vp-------------------------- 57 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVP-------------------------- 57 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCc--------------------------
Confidence 34567899999999999999999999999988755544422 111111111111
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
..+.|++..+.-......-++
T Consensus 58 -----------------------------------------------------------t~ivD~ss~~~~~~~l~~Eir 78 (625)
T KOG1707|consen 58 -----------------------------------------------------------TSIVDTSSDSDDRLCLRKEIR 78 (625)
T ss_pred -----------------------------------------------------------eEEEecccccchhHHHHHHHh
Confidence 667788765555555556688
Q ss_pred hcCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.|+.+.++|+++++.+++.+.. |+..++...++...+||++||||+|...
T Consensus 79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 9999999999999999999986 9999999887778999999999999986
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.60 E-value=2.2e-14 Score=127.65 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+|||+|++.|.......+..+|++++|+|+.++ .+++.+..| ... ...|++++.||.|+.+
T Consensus 84 ~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~----~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 84 HVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM----GLKHIIIVQNKIDLVK 151 (203)
T ss_pred EEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc----CCCcEEEEEEchhccC
Confidence 389999999999887777778889999999999863 334433332 211 2357889999999864
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.59 E-value=2.4e-14 Score=146.28 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=55.1
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|...+..+++.+|++++|+|+++.........|..... ..+|+++|+||+|+.+
T Consensus 74 ~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~------~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEEEECCCCCc
Confidence 449999999999999999999999999999999998766666655544321 3688999999999864
No 187
>PRK00089 era GTPase Era; Reviewed
Probab=99.57 E-value=7.6e-14 Score=131.22 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=42.1
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|..... ......+..+|++++|+|+++..+- ......+.+.. ...|+++|+||+|+.
T Consensus 55 i~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 55 IIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred EEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 8899999964432 2334456789999999999883221 11222222321 368899999999986
No 188
>KOG0075|consensus
Probab=99.57 E-value=8.2e-15 Score=118.55 Aligned_cols=119 Identities=19% Similarity=0.321 Sum_probs=92.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+.+.++|-.++|||||+|....+.|.+.-.||++-. .+.+ ....+.
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn-mrk~--tkgnvt---------------------------- 66 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN-MRKV--TKGNVT---------------------------- 66 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccce-eEEe--ccCceE----------------------------
Confidence 357889999999999999999999999988888888721 1122 222222
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||.+|+-.|++.+..|+++.
T Consensus 67 ---------------------------------------------------------iklwD~gGq~rfrsmWerycR~v 89 (186)
T KOG0075|consen 67 ---------------------------------------------------------IKLWDLGGQPRFRSMWERYCRGV 89 (186)
T ss_pred ---------------------------------------------------------EEEEecCCCccHHHHHHHHhhcC
Confidence 78999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++.|.|..++...+.-..-++.+... .....+|+.+.|||.|+.+
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCcc
Confidence 9999999999987766554433333221 1336899999999999985
No 189
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.57 E-value=5.5e-14 Score=127.94 Aligned_cols=66 Identities=24% Similarity=0.310 Sum_probs=53.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|..+.... ....|+..+.+ ..+|+++++||.|+..
T Consensus 65 ~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 65 KVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred EEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 399999999999998888999999999999999886543 23445554443 3689999999999975
No 190
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.56 E-value=4.6e-14 Score=135.58 Aligned_cols=114 Identities=30% Similarity=0.429 Sum_probs=86.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.+-+|++|+|+||||||||+|.++ .+..++|.|. +||++......++|++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~-----~~d~AIVTdI~GTTRDviee~i~i~G~p----------------------- 266 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALL-----GRDRAIVTDIAGTTRDVIEEDINLNGIP----------------------- 266 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHh-----cCCceEecCCCCCccceEEEEEEECCEE-----------------------
Confidence 346899999999999999999999 7778999877 7888888888888766
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-------
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA------- 158 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~------- 158 (373)
+.+.||+|.-+-..
T Consensus 267 -----------------------------------------------------------v~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 267 -----------------------------------------------------------VRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred -----------------------------------------------------------EEEEecCCcccCccHHHHHHH
Confidence 99999999543321
Q ss_pred -hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 159 -MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 159 -~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
-.......||.+++|+|.+.+.+-+.... ++ .. ....|+++|.||.|+..
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~---~~---~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE---LL---PKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH---hc---ccCCCEEEEEechhccc
Confidence 23345678999999999988632222211 11 11 15688999999999986
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.55 E-value=6.3e-14 Score=117.83 Aligned_cols=65 Identities=25% Similarity=0.289 Sum_probs=49.9
Q ss_pred eeeeccccccchhH-------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|...+.. ....++..+|++++|+|..+........ |...... ...|+++|+||.|+..
T Consensus 47 ~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~-----~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 47 VVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE-----RGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh-----cCCeEEEEEEccccCC
Confidence 99999999776543 3445778999999999999987777655 3333332 5789999999999875
No 192
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.54 E-value=1.5e-13 Score=117.21 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=25.3
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceecce
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~ 43 (373)
.|+++|++|+|||||++.++++.+.....++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~ 32 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTP 32 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCC
Confidence 38999999999999999999766655444443
No 193
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.53 E-value=2.4e-13 Score=119.44 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=49.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|+||+.+|.......+..+|++++|.|..+.-..... ..+..+.. ..+|++++.||+|+.
T Consensus 72 i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~-----~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 72 ITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRE-----LGIPIIVVLNKMDLI 135 (188)
T ss_dssp EEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHH-----TT-SEEEEEETCTSS
T ss_pred eeecccccccceeecccceecccccceeeeecccccccccc-cccccccc-----cccceEEeeeeccch
Confidence 99999999999988888889999999999999865443332 22233333 468899999999987
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.53 E-value=5.6e-14 Score=138.95 Aligned_cols=68 Identities=22% Similarity=0.141 Sum_probs=46.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++..++... ..++..+... ...|++++.||.|+.+
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~----~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL----GINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc----CCCeEEEEEEcccccc
Confidence 399999999998876555667889999999999873222111 1122222222 2346889999999864
No 195
>KOG0076|consensus
Probab=99.52 E-value=8.3e-14 Score=116.06 Aligned_cols=70 Identities=24% Similarity=0.391 Sum_probs=60.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||.+||+..++++..||..++++++++|.++++-|+.....++.+...- ....+|+++..||.|+.+
T Consensus 71 l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q~ 140 (197)
T KOG0076|consen 71 LSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQN 140 (197)
T ss_pred eEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhhh
Confidence 8999999999999999999999999999999999998888777665554432 236799999999999986
No 196
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.51 E-value=2.2e-13 Score=122.21 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=53.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+.+|||+|+.+|......++..+|++++|+|..+..++.. ..|+..+.. ...|+++++||.|+.
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-----~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECcccC
Confidence 449999999999998888899999999999999988766543 334444332 358999999999986
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.50 E-value=2.7e-13 Score=141.68 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=29.0
Q ss_pred HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 315 EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 315 ~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.+++..|+|++++||++|.|++++++.+.+..
T Consensus 134 ~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 134 IDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 3556677899999999999999999999998754
No 198
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.50 E-value=5.3e-13 Score=135.91 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=51.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|++.|..++...++.+|++++|+|+++ +.+++.+..+ .. ..+|+++++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH-----cCCCEEEEEECcCCc
Confidence 7899999999999999888999999999999987 6677665432 21 368999999999985
No 199
>KOG0084|consensus
Probab=99.50 E-value=1.6e-14 Score=122.97 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=52.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.+++||||||++|+++...||++||++|+|||+|++.||+++..|+.++.++..+
T Consensus 59 KlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~ 113 (205)
T KOG0084|consen 59 KLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE 113 (205)
T ss_pred EEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC
Confidence 4679999999999999999999999999999999999999999999999998664
No 200
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.50 E-value=1.1e-13 Score=136.74 Aligned_cols=68 Identities=24% Similarity=0.075 Sum_probs=48.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHH--HHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~--i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+||++|+++|.......+..+|++++|+|+++..++... .+.+. +.... ...|+++++||+|+.+
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~-~t~~~~~~~~~~---~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQP-QTREHAFLARTL---GINQLIVAINKMDSVN 155 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCC-chHHHHHHHHHc---CCCeEEEEEEChhccC
Confidence 399999999999877666678899999999999987543222 22211 22221 2357889999999864
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.49 E-value=3e-13 Score=120.82 Aligned_cols=66 Identities=23% Similarity=0.059 Sum_probs=45.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|.......+..+|++++|+|++....-.. ......+... ...++++|.||.|+.+
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~----~~~~iIvviNK~D~~~ 144 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLL----GIRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHc----CCCcEEEEEEchhccc
Confidence 8899999999887666667889999999999987532211 1111222221 2245777899999863
No 202
>KOG0071|consensus
Probab=99.49 E-value=5.2e-13 Score=107.33 Aligned_cols=70 Identities=14% Similarity=0.313 Sum_probs=56.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+|+++.+.++..||.+..++|||.|..+..-.+..+.-+..+...+ +..+.|+.+.+||.|+.+
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPD 132 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCccccc
Confidence 9999999999999999999999999999999988866665554333332221 235789999999999986
No 203
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.48 E-value=5.1e-13 Score=131.10 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=47.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+||++|+++|.......+..+|++++|+|+++. .+.+.+. .+... ...|++++.||+|+.+
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~----gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEII----GIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHHc----CCCeEEEEEEccccCC
Confidence 389999999999988777778889999999999863 2333332 22221 2346889999999874
No 204
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.47 E-value=1.2e-12 Score=118.01 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=46.3
Q ss_pred eeeeeccccccchhHhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+.||+|+++|.......+. .+|++++|.|......-. ...++..+.. ..+|+++|.||+|+.+
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~-----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 85 LVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA-----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred EEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 3899999999998765554444 589999999987643322 2233333433 3578999999999864
No 205
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.46 E-value=1.4e-12 Score=120.81 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=50.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|.......++.+|++++|+|.++.... ....|+..... ..+|+++++||+|+..
T Consensus 72 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~-----~~~P~iivvNK~D~~~ 137 (267)
T cd04169 72 VINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL-----RGIPIITFINKLDREG 137 (267)
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh-----cCCCEEEEEECCccCC
Confidence 399999999999988778889999999999999875322 22233333322 4689999999999865
No 206
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.46 E-value=3.6e-13 Score=134.79 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=49.5
Q ss_pred eeeeccccc----------cchhHhH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGD----------LQFPAMR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|. +.|..++ ..++..+|++++|||+++..++..+. ++..+.. ...|+++|+||+|+
T Consensus 261 ~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-----~~~piIiV~NK~Dl 334 (472)
T PRK03003 261 WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-----AGRALVLAFNKWDL 334 (472)
T ss_pred EEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECccc
Confidence 779999995 3444443 34578999999999999998888774 4444433 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 335 ~~ 336 (472)
T PRK03003 335 VD 336 (472)
T ss_pred CC
Confidence 75
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.46 E-value=1.3e-12 Score=128.28 Aligned_cols=64 Identities=20% Similarity=0.157 Sum_probs=44.7
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|..........+|++++|+|+.++ .+.+.+.. +... ...|+++|+||+|+.+
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~----~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII----GIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc----CCCcEEEEEEeecccc
Confidence 389999999988876555555667999999999853 33333322 2211 2346889999999875
No 208
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.45 E-value=1.7e-12 Score=132.34 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=53.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++|||+|+.+|......+++.+|++++|+|..+. .......|+..+.. ..+|++++.||.|+.+
T Consensus 65 kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~-----~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 65 KINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE-----LGLKPIVVINKIDRPS 130 (594)
T ss_pred EEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH-----CCCCEEEEEECCCCCC
Confidence 399999999999999899999999999999999763 23444556665554 3688999999999864
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.45 E-value=2.8e-12 Score=130.61 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=51.4
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|...+..+++.+|++++|+|..+...... ..++..+.. ..+|.+++.||.|+.+
T Consensus 69 ~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-----~gip~IVviNKiD~~~ 134 (607)
T PRK10218 69 RINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-----YGLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-----cCCCEEEEEECcCCCC
Confidence 39999999999999999999999999999999987533322 233333332 3688899999999864
No 210
>COG1159 Era GTPase [General function prediction only]
Probab=99.44 E-value=2.6e-12 Score=117.00 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=43.6
Q ss_pred eeeeccccccchh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.||||-.+-. ......+.++|.+++|.|.+..-.-. .+..++.+++ ...|++++.||.|...
T Consensus 56 iIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~-----~~~pvil~iNKID~~~ 128 (298)
T COG1159 56 IIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPG-DEFILEQLKK-----TKTPVILVVNKIDKVK 128 (298)
T ss_pred EEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCcc-HHHHHHHHhh-----cCCCeEEEEEccccCC
Confidence 8889999953321 23445677899999999998743221 1223333333 3579999999999875
No 211
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.41 E-value=4.8e-12 Score=129.61 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=46.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+||++|+++|.......+.++|++++|+|+.+ +.+.+.+. .+.. -.+| +++|.||+|+.+
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~----il~~-----lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA----ILQL-----TGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH----HHHH-----cCCCeEEEEEECCccCC
Confidence 7899999999998777777899999999999887 44444442 1222 1344 578999999864
No 212
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.39 E-value=1.5e-11 Score=114.25 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=51.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|.......+..+|++++|+|.++.........|. .+.. ..+|++++.||.|+..
T Consensus 66 i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~-----~~~p~iivvNK~D~~~ 130 (268)
T cd04170 66 INLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE-----AGIPRIIFINKMDRER 130 (268)
T ss_pred EEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEECCccCC
Confidence 899999999888888888899999999999998866554444443 2332 4689999999999875
No 213
>PRK13351 elongation factor G; Reviewed
Probab=99.35 E-value=8.8e-12 Score=130.39 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=55.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|.++.........|. .+.. ..+|+++++||+|+..
T Consensus 74 ~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~-----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 74 RINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR-----YGIPRLIFINKMDRVG 139 (687)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh-----cCCCEEEEEECCCCCC
Confidence 3999999999999999999999999999999999877766655553 3332 4689999999999986
No 214
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.34 E-value=2.3e-11 Score=107.69 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=40.5
Q ss_pred eeeeccccccchhH-----hHHhhhhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-----MRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----~~~~~~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|...... +....+.++|.++++.+ ..|.... .|++.+... ..|+++|+||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~----~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS----TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC----CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchh
Confidence 89999999754321 22333567888888743 2344443 455666553 478999999999963
No 215
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=4e-11 Score=101.49 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=55.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|+||++|..++..+.+++.+.+++.|-+.+..+ .....++.+... ..+|+++..||.||.+
T Consensus 70 v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~----~~ip~vVa~NK~DL~~ 135 (187)
T COG2229 70 VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR----NPIPVVVAINKQDLFD 135 (187)
T ss_pred EEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc----cCCCEEEEeeccccCC
Confidence 89999999999999999999999999999999999998 444444444433 2399999999999986
No 216
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.34 E-value=3.4e-11 Score=110.44 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=39.0
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
++.|.||.|+.+. +....+.+.. .++.+||+.|.|++++.+.+.+...+.+
T Consensus 242 ~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 242 ALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred eEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence 4599999999763 2333444443 7899999999999999999998765544
No 217
>KOG1423|consensus
Probab=99.34 E-value=7.7e-12 Score=113.50 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=45.5
Q ss_pred eeeeccccccchhH------------hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA------------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------------~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.++||+|...-.. -.......||.+++++|+++....-+ ...++.+.++ ..+|.++|.||.|
T Consensus 122 lvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y----s~ips~lvmnkid 196 (379)
T KOG1423|consen 122 LVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY----SKIPSILVMNKID 196 (379)
T ss_pred EEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH----hcCCceeeccchh
Confidence 88999999422111 12234567999999999997433222 2345566666 4899999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 197 ~~k 199 (379)
T KOG1423|consen 197 KLK 199 (379)
T ss_pred cch
Confidence 875
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.34 E-value=8.3e-12 Score=112.46 Aligned_cols=67 Identities=24% Similarity=0.138 Sum_probs=46.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh-------hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-------SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-------s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+.+|.......+..+|++++|+|+++.. ..+....|. ..... ...|++++.||.|+..
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTL----GVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHc----CCCeEEEEEEcccccc
Confidence 3999999999888766666677899999999998742 111122221 12211 2367888999999873
No 219
>KOG0092|consensus
Probab=99.34 E-value=1.3e-12 Score=111.10 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=60.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+||++|.++.|+||++|+++|+|||+|+..||..++.|..++.+..++ + -.+.|||||+
T Consensus 54 ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~-~------------~vialvGNK~ 120 (200)
T KOG0092|consen 54 IKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASP-N------------IVIALVGNKA 120 (200)
T ss_pred EEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCC-C------------eEEEEecchh
Confidence 44679999999999999999999999999999999999999999999999998763 1 2245899999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (200)
T KOG0092|consen 121 D 121 (200)
T ss_pred h
Confidence 8
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.33 E-value=1.6e-11 Score=110.35 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=53.4
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+++|......+++.+|++++|+|+....+.+....|.. ... ..+|+++++||+|+..
T Consensus 73 ~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~-----~~~p~ilviNKiD~~~ 139 (222)
T cd01885 73 YLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK-----ERVKPVLVINKIDRLI 139 (222)
T ss_pred eEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH-----cCCCEEEEEECCCcch
Confidence 449999999999999999999999999999999998766554333322 221 3579999999999863
No 221
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.33 E-value=8.6e-12 Score=123.64 Aligned_cols=64 Identities=27% Similarity=0.208 Sum_probs=47.1
Q ss_pred eeeeccccccchhH----------hH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPA----------MR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~----------~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|..++.. .. ..++..+|++++|+|+++..+..... ++..+.+ ...|+++|+||+|+
T Consensus 222 ~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~-----~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 222 YLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE-----AGKALVIVVNKWDL 295 (429)
T ss_pred EEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH-----cCCcEEEEEECccc
Confidence 88999999654321 11 34678999999999999887776654 3333332 36899999999999
Q ss_pred c
Q psy16673 214 T 214 (373)
Q Consensus 214 ~ 214 (373)
.
T Consensus 296 ~ 296 (429)
T TIGR03594 296 V 296 (429)
T ss_pred C
Confidence 7
No 222
>KOG0087|consensus
Probab=99.33 E-value=8.6e-13 Score=113.65 Aligned_cols=66 Identities=26% Similarity=0.415 Sum_probs=61.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+++||||||++|+++.+.||++|.++++|||+|.+.+|+++..|+++++.+.+. +++ ++|||||+|
T Consensus 65 aqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~-niv------------imLvGNK~D 130 (222)
T KOG0087|consen 65 AQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADS-NIV------------IMLVGNKSD 130 (222)
T ss_pred EeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC-CeE------------EEEeecchh
Confidence 579999999999999999999999999999999999999999999999999875 344 559999998
No 223
>KOG0079|consensus
Probab=99.32 E-value=1.1e-12 Score=106.27 Aligned_cols=57 Identities=32% Similarity=0.474 Sum_probs=53.4
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
...+++|||||+++|+.+.+.+|++.|++++|||+|+.+||.+++.|.++++..++.
T Consensus 56 ~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds 112 (198)
T KOG0079|consen 56 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS 112 (198)
T ss_pred EEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc
Confidence 345789999999999999999999999999999999999999999999999998774
No 224
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.32 E-value=3.8e-11 Score=111.27 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=49.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......+++.+|++++|.|..+...-.. ..++..+.. ..+|++++.||.|+.+
T Consensus 66 i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~-----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 66 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR-----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred EEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 8999999999998888889999999999999876432222 223333332 4689999999999875
No 225
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.32 E-value=5e-11 Score=120.11 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=51.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......+++.+|++++|+|.++.-.- ....++..... ..+|++++.||.|+..
T Consensus 80 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~-----~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 80 LINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL-----RDTPIFTFINKLDRDG 145 (526)
T ss_pred EEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh-----cCCCEEEEEECCcccc
Confidence 399999999999998888889999999999999875322 22333333332 4799999999999875
No 226
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=1.2e-11 Score=129.70 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=48.1
Q ss_pred eeeecccccc----------chhHhH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL----------QFPAMR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~----------~~~~~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .|..++ ..++..+|++++|+|+++..++..+..| ..+.. ...|+++|+||+|+
T Consensus 500 ~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-----~~~piIiV~NK~DL 573 (712)
T PRK09518 500 WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-----AGRALVLVFNKWDL 573 (712)
T ss_pred EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCEEEEEEchhc
Confidence 7799999953 233332 3346889999999999998888876543 33332 36899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 574 ~~ 575 (712)
T PRK09518 574 MD 575 (712)
T ss_pred CC
Confidence 75
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=1.1e-10 Score=103.11 Aligned_cols=64 Identities=27% Similarity=0.175 Sum_probs=46.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~ 214 (373)
+.+.||+|+..|.......+..+|++++|.|....-.-. ....+..+.+ ..+| ++++.||.|+.
T Consensus 67 i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~-----~~~~~iIvviNK~D~~ 131 (195)
T cd01884 67 YAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ-----VGVPYIVVFLNKADMV 131 (195)
T ss_pred EEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-----cCCCcEEEEEeCCCCC
Confidence 789999999988877777788999999999987643222 1222333333 2455 77889999985
No 228
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.30 E-value=5.5e-11 Score=112.39 Aligned_cols=50 Identities=6% Similarity=0.082 Sum_probs=35.0
Q ss_pred eeeeeccccccccchhhhhhHHHHH-hhhcCCeEEEeccCCCcCHHHHHH-HHHHH
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIR-EQRQDFQLLECSAKDNYNIKEVFR-TFLTL 347 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~-a~~~~~~~~E~SAktg~nv~elf~-~i~~~ 347 (373)
++|+|+||.|+........ .+ ......+++.+||+.+.|++++.+ .+++.
T Consensus 216 PvI~VlNK~Dl~~~~~~~~----~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~ 267 (318)
T cd01899 216 PMVIAANKADIPDAENNIS----KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKY 267 (318)
T ss_pred cEEEEEEHHHccChHHHHH----HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHh
Confidence 3559999999754332221 22 222356799999999999999998 57774
No 229
>KOG0078|consensus
Probab=99.29 E-value=2.7e-12 Score=111.02 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=52.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
..+++|||+||++|..+...||++|.++++|||+|+..||+++..|++.+.++.++
T Consensus 61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~ 116 (207)
T KOG0078|consen 61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASD 116 (207)
T ss_pred EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC
Confidence 34679999999999999999999999999999999999999999999999998764
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.29 E-value=1.5e-11 Score=118.12 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe--------------ccCCcc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA--------------GNKSDM 72 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 72 (373)
..+||+|+|+||||||||+|+++ ++.+..+++. +|++.......+++++|.++ .+....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~il-----geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAIL-----GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhc-----cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 46999999999999999999999 6667777755 67777777777888888877 566777
Q ss_pred chhhhcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccccc
Q psy16673 73 TSHHRAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSH 122 (373)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~ 122 (373)
..+..++..+|+++++.|.+.. .+..+..+.....+++++|+||+|+...
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 7888899999999999996443 3555557777899999999999997543
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.28 E-value=1.6e-10 Score=116.52 Aligned_cols=66 Identities=23% Similarity=0.228 Sum_probs=50.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+.+|......++..+|++++|+|..+.- ......+++.+.. ..+|+++++||+|+..
T Consensus 81 ~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~-----~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 81 LVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL-----RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh-----cCCCEEEEEECccccC
Confidence 3999999999999887788899999999999988742 1223334443322 4689999999999864
No 232
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.27 E-value=1e-10 Score=122.33 Aligned_cols=65 Identities=23% Similarity=0.264 Sum_probs=51.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......+++.+|++++|+|..+....+....| ..+.. ..+|+++++||.|+..
T Consensus 77 i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~-----~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 77 INIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR-----YEVPRIAFVNKMDKTG 141 (689)
T ss_pred EEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH-----cCCCEEEEEECCCCCC
Confidence 99999999999988888889999999999999886555443333 23332 3689999999999975
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=5.1e-11 Score=110.84 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=25.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDR 38 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~ 38 (373)
.++|+++|++|+|||||+|++++..+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~ 32 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPS 32 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccc
Confidence 68999999999999999999998776543
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.26 E-value=9.4e-11 Score=114.78 Aligned_cols=65 Identities=25% Similarity=0.129 Sum_probs=44.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|..........+|++++|+|+......... ..+..+.. ..+|. +++.||+|+.+
T Consensus 77 ~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~-----~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ-----VGVPYIVVFLNKCDMVD 142 (394)
T ss_pred EEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-----cCCCEEEEEEEecccCC
Confidence 88999999999876555566788999999999873222221 12222322 24665 46899999864
No 235
>KOG1489|consensus
Probab=99.25 E-value=9.5e-11 Score=107.09 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=54.0
Q ss_pred eeeeccccccch----hHhHHhhh---hhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRRLSI---ATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~~~~---~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+-|.+|..+- ..+-..|+ ..+..+++|.|++.+ .-++.++.+..++..+.....+-|..||.||+|+.
T Consensus 246 ~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 246 ITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred eEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 677788884321 23444444 457999999999998 88889988888888887666778889999999985
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
+
T Consensus 326 e 326 (366)
T KOG1489|consen 326 E 326 (366)
T ss_pred h
Confidence 3
No 236
>KOG0074|consensus
Probab=99.24 E-value=4.1e-11 Score=96.63 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=58.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++||.+|+...+..+..||...|++|+|.|.++..-|+.+..-+-++.+-- ....+|+.|..||.|+.-
T Consensus 62 f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 62 FHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLT 133 (185)
T ss_pred EEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHh
Confidence 349999999999999999999999999999999999999998765333332211 125688999999998863
No 237
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.24 E-value=2.4e-11 Score=111.08 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=81.3
Q ss_pred CCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhh
Q psy16673 233 DLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311 (373)
Q Consensus 233 ~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~ 311 (373)
.++|..+.+.+++++|++++|||++++. ||+.+..|+..+.. .++|++ +|+||+||...+.+.
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~v------------IV~NK~DL~~~~~~~ 86 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPI------------IVLNKIDLLDDEDME 86 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEECcccCCCHHHH
Confidence 3788888899999999999999999877 89999999876643 235544 999999998777777
Q ss_pred hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 312 CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 312 ~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.++.+.++. +|+++++|||++|.|++++|+.+..
T Consensus 87 ~~~~~~~~~-~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 87 KEQLDIYRN-IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHHHHHHH-CCCeEEEEecCCchhHHHHHhhhcC
Confidence 667776664 7899999999999999999998764
No 238
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.24 E-value=5e-12 Score=102.62 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=35.6
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
.+++.++++++||+..+..+++.+ |...+.... ..++|++++|||.|+.
T Consensus 42 ~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~--k~dl~~~~~~nk~dl~ 90 (124)
T smart00010 42 TSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN--KSDLPILVGGNRDVLE 90 (124)
T ss_pred cccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC--CCCCcEEEEeechhhH
Confidence 345778999999999999999876 776655432 2456777777777764
No 239
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.7e-10 Score=115.73 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=32.9
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+.+++.+..|+|.+++||++|.|++++.+.+++++...
T Consensus 129 D~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 129 DIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred cHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 45778888999999999999999999999999865433
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=99.22 E-value=3.3e-10 Score=110.84 Aligned_cols=65 Identities=22% Similarity=0.128 Sum_probs=45.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.++||+|+++|..........+|++++|+|......-... ..+..+.. ..+| ++++.||+|+.+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~-----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ-----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH-----cCCCEEEEEEEecCCcc
Confidence 78999999998876666667789999999998763222211 22222332 2466 678899999863
No 241
>COG2262 HflX GTPases [General function prediction only]
Probab=99.22 E-value=3.4e-10 Score=107.29 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=49.1
Q ss_pred eeeeccccccc--hhHhHHhh------hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ--FPAMRRLS------IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~--~~~~~~~~------~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+-+-||.|-.. -..+...| ...+|.++.|.|.+++...++++.-.+-+.+... .++|+++|.||+|+..
T Consensus 242 vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~--~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 242 VLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGA--DEIPIILVLNKIDLLE 318 (411)
T ss_pred EEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCC--CCCCEEEEEecccccC
Confidence 55667777321 12233333 3478999999999999888888776666666532 4699999999999875
No 242
>KOG1191|consensus
Probab=99.21 E-value=1.3e-10 Score=111.78 Aligned_cols=48 Identities=31% Similarity=0.495 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIP 62 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~ 62 (373)
.++|+|+|+||||||||+|.|. .+..+++++. +|||...-...+.|.+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~-----~~drsIVSpv~GTTRDaiea~v~~~G~~ 317 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALS-----REDRSIVSPVPGTTRDAIEAQVTVNGVP 317 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHh-----cCCceEeCCCCCcchhhheeEeecCCeE
Confidence 5799999999999999999999 6667777755 5666554444455444
No 243
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.21 E-value=3.1e-11 Score=117.45 Aligned_cols=50 Identities=8% Similarity=0.140 Sum_probs=32.9
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHH-HHHHHHH
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKE-VFRTFLT 346 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~e-lf~~i~~ 346 (373)
+++++|.||.|+...... ...+.+..+..++.+||+.+.|+++ +.+.+++
T Consensus 218 KPvI~VlNK~D~~~~~~~----l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~ 268 (396)
T PRK09602 218 KPMVIAANKADLPPAEEN----IERLKEEKYYIVVPTSAEAELALRRAAKAGLID 268 (396)
T ss_pred CCEEEEEEchhcccchHH----HHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHh
Confidence 345599999997533221 1122222356699999999999999 5555555
No 244
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.21 E-value=9.5e-10 Score=99.10 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=51.2
Q ss_pred eeeeccccccchhH-----hHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPA-----MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||+||+..+-. .+...++++.++|+|+|+...+-.+.+..+.+.+.......+++.+-+.-+|.|+..
T Consensus 50 l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~ 125 (232)
T PF04670_consen 50 LNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLS 125 (232)
T ss_dssp EEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-
T ss_pred EEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCC
Confidence 99999999986643 356678999999999999966666666655555554444458999999999999975
No 245
>KOG0098|consensus
Probab=99.21 E-value=1.5e-11 Score=103.93 Aligned_cols=54 Identities=31% Similarity=0.496 Sum_probs=51.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
+++|||+|++.|.+++..+|+++.++++|||+++++||+.+..|+.++..+..+
T Consensus 57 lqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~ 110 (216)
T KOG0098|consen 57 LQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNE 110 (216)
T ss_pred EEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCC
Confidence 679999999999999999999999999999999999999999999999988543
No 246
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=113.24 Aligned_cols=89 Identities=11% Similarity=0.167 Sum_probs=75.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-----------CCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-----------FQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-----------~~~p~v~~~~~~~~ 292 (373)
.+++|||+|+++|..+++.++++++++|+|||++++.||+++..|++++...... .++|
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip---------- 153 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP---------- 153 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc----------
Confidence 4789999999999999999999999999999999999999999999999876421 1344
Q ss_pred ceeeeeccccccccch---h---hhhhHHHHHhhhcCC
Q psy16673 293 HAFLLVYSTTCLESFQ---S---VKCYFEEIREQRQDF 324 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r---~---v~~~~~~~~a~~~~~ 324 (373)
++|||||+||..++ . +..++++.+|+.+|+
T Consensus 154 --IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 154 --YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred --EEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 55999999997653 3 467899999998884
No 247
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.2e-10 Score=109.92 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=52.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|||||+.|..++.....-+|.+++|.++.+ +.+.+.+.. ++. ...|++++.||+|+.+
T Consensus 57 itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak~-----a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 57 ITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AKA-----AGVPIVVAINKIDKPE 121 (509)
T ss_pred EEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HHH-----CCCCEEEEEecccCCC
Confidence 8999999999999999999999999999999988 455555432 222 5899999999999985
No 248
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.20 E-value=7.8e-10 Score=95.74 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEe
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~ 59 (373)
....-|+++|++|||||||+|.+++..- .+-++....++..++...+.
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~----LArtSktPGrTq~iNff~~~ 69 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKN----LARTSKTPGRTQLINFFEVD 69 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcc----eeecCCCCCccceeEEEEec
Confidence 3456799999999999999999995421 24444455566666666555
No 249
>KOG0080|consensus
Probab=99.20 E-value=1.1e-11 Score=102.03 Aligned_cols=54 Identities=22% Similarity=0.412 Sum_probs=50.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
+.+||||||++|+.++|.||++|.++|+|||+|.+.+|..+..|.+++.-++..
T Consensus 62 laiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn 115 (209)
T KOG0080|consen 62 LAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTN 115 (209)
T ss_pred EEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCC
Confidence 459999999999999999999999999999999999999999999999988664
No 250
>PRK12735 elongation factor Tu; Reviewed
Probab=99.19 E-value=4e-10 Score=110.33 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=45.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEE-Eecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV-VAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~-ivgnK~Dl~~ 215 (373)
+.++||+|+++|.......+..+|++++|+|+....... ....+..+.. ..+|.+ ++.||.|+.+
T Consensus 77 i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~-----~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH-----cCCCeEEEEEEecCCcc
Confidence 789999999988766667778899999999997642222 1222233332 346754 5799999863
No 251
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.19 E-value=1.6e-10 Score=114.71 Aligned_cols=65 Identities=23% Similarity=0.225 Sum_probs=46.2
Q ss_pred eeeeccccccc----------hhHh-HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQ----------FPAM-RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~----------~~~~-~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|..+ |... ...++..+|++++|+|+++..+.....- ...+.+ ...|+++++||+|+
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i-~~~~~~-----~~~~~ivv~NK~Dl 296 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRI-AGLALE-----AGRALVIVVNKWDL 296 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCcEEEEEECccC
Confidence 78999999532 2222 2246788999999999999877766532 233322 35899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 297 ~~ 298 (435)
T PRK00093 297 VD 298 (435)
T ss_pred CC
Confidence 74
No 252
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.18 E-value=2.5e-10 Score=112.10 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=45.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.++||+|+++|.......+..+|++++|+|....-.-...+.|. .+... ...+++++.||+|+.+
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~----~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL----GIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc----CCCcEEEEEEeccccc
Confidence 3889999999999776667788999999999987543222211221 12221 2335888999999864
No 253
>KOG0093|consensus
Probab=99.18 E-value=2.2e-11 Score=98.84 Aligned_cols=53 Identities=28% Similarity=0.446 Sum_probs=50.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
..+++|||+|+++|+.++..+|+++.++|+|||+|+.+||..++.|.-.+..+
T Consensus 70 iklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIkty 122 (193)
T KOG0093|consen 70 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTY 122 (193)
T ss_pred EEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheee
Confidence 56789999999999999999999999999999999999999999999888765
No 254
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.16 E-value=4.5e-11 Score=106.09 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=90.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc------------------CCCCCchh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ------------------DFQFPAMR 285 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~------------------~~~~p~v~ 285 (373)
.+++|||+|++.|..+++.+|++++++++|||++++.||+++..|++++..... ..++|
T Consensus 55 ~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P--- 131 (202)
T cd04102 55 FVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP--- 131 (202)
T ss_pred EEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce---
Confidence 478999999999999999999999999999999999999999999999977432 12345
Q ss_pred hccccccceeeeeccccccccchhhhhhH----HHHHhhhcCCeEEEeccCCCc----------CHHHHHHHHHH
Q psy16673 286 RLSIATAHAFLLVYSTTCLESFQSVKCYF----EEIREQRQDFQLLECSAKDNY----------NIKEVFRTFLT 346 (373)
Q Consensus 286 ~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~----~~~~a~~~~~~~~E~SAktg~----------nv~elf~~i~~ 346 (373)
++|||||.|+...|.++.+. ...+|.+.|++.++.+++++. .+...|+.+++
T Consensus 132 ---------iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 132 ---------LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred ---------EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 55999999998877666553 567789999999999988532 35566666665
No 255
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.15 E-value=5e-10 Score=111.81 Aligned_cols=66 Identities=24% Similarity=0.134 Sum_probs=44.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|++.|.......+..+|++++|+|....-.-.....|. +.... ...|++++.||+|+.+
T Consensus 109 i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l---g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 109 FIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL---GIKHLVVAVNKMDLVD 174 (474)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh---CCCceEEEEEeecccc
Confidence 889999999998766666678999999999987642211111111 11111 2246788999999864
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.15 E-value=1.5e-10 Score=100.00 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=48.0
Q ss_pred eeeeccccccchhHhHHh---hhhhcCeEEEEEeCC-ChhhHHHHHHHHHHHHHHh-ccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRL---SIATAHAFLLVYSTT-CLESFQSVKCYFEEIREQR-QDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~---~~~~~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~-~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|+||+.+.+..... +...+-++|+|.|.. ....+..+.+++..+.... .....+|+.|+.||.|+..
T Consensus 51 ~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 51 LRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp ECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 899999999987753333 478899999999986 4555666655444443332 2346799999999999975
No 257
>KOG0462|consensus
Probab=99.14 E-value=7.3e-10 Score=107.75 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=52.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++.||+|+-+|+......+..++|+++|.|....-.-+.+..++-.+. ....++.|.||+|+..
T Consensus 125 ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe------~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE------AGLAIIPVLNKIDLPS 191 (650)
T ss_pred eEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH------cCCeEEEeeeccCCCC
Confidence 349999999999999999999999999999999987544444444333332 4677888999999986
No 258
>CHL00071 tufA elongation factor Tu
Probab=99.14 E-value=1.6e-09 Score=106.64 Aligned_cols=65 Identities=23% Similarity=0.133 Sum_probs=46.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+.||||+.+|.......+..+|++++|.|....-.-.. ...+..+.. ..+| ++++.||.|+.+
T Consensus 77 ~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~-----~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ-----VGVPNIVVFLNKEDQVD 142 (409)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCEEEEEEEccCCCC
Confidence 7899999999887777777889999999999876432222 222223332 3567 678899999864
No 259
>KOG0394|consensus
Probab=99.14 E-value=4.4e-11 Score=100.85 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=62.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+++|||+||++|.++....|+++|+++++||++++.||+++..|.++...+..+.. -+.-+|||+|||.|+
T Consensus 60 lQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~---------Pe~FPFVilGNKiD~ 130 (210)
T KOG0394|consen 60 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD---------PETFPFVILGNKIDV 130 (210)
T ss_pred EEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC---------CCcccEEEEcccccC
Confidence 67999999999999999999999999999999999999999999999998876422 123457799999983
No 260
>KOG0086|consensus
Probab=99.12 E-value=6.8e-11 Score=96.53 Aligned_cols=55 Identities=27% Similarity=0.427 Sum_probs=51.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.+++|||+||++|+++++.||++|.+.++|||+|+++||+.+..|...++...+.
T Consensus 59 KLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~ 113 (214)
T KOG0086|consen 59 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASP 113 (214)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCC
Confidence 3579999999999999999999999999999999999999999999998877654
No 261
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.12 E-value=5.1e-10 Score=110.92 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=47.7
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHH-------HHHHHHHHHHHHhccCCCc-cEEEeccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ-------SVKCYFEEIREQRQDFQEI-PIVVAGNKSDMT 214 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~-------~l~~~~~~i~~~~~~~~~~-pi~ivgnK~Dl~ 214 (373)
.+.+.|++|+++|.......++.+|++++|+|+.+ ..|+ .....+..+.. ..+ +++++.||.|+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~-----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT-----LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH-----cCCCcEEEEEEcccCC
Confidence 48999999999999888888999999999999987 3333 22222111221 345 578899999976
No 262
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.11 E-value=7.4e-10 Score=114.79 Aligned_cols=66 Identities=18% Similarity=0.035 Sum_probs=44.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+++|.......+..+|++++|+|......-.....+ ..+... ...+++++.||+|+.+
T Consensus 106 ~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~~~~----~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 106 FIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIASLL----GIRHVVLAVNKMDLVD 171 (632)
T ss_pred EEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHHHHh----CCCeEEEEEEeccccc
Confidence 78999999998876666678899999999998754322111111 112222 2356788999999863
No 263
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.11 E-value=1.1e-09 Score=88.32 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=37.0
Q ss_pred eeeeccccccchh---------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDLQFP---------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~~~~---------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.++||+|...-. ......+..+|++++|+|..++.. +....++++++ ...|+++|.||
T Consensus 49 ~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 49 FILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPIT-EDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp EEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSH-HHHHHHHHHHH------TTSEEEEEEES
T ss_pred EEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCC-HHHHHHHHHHh------cCCCEEEEEcC
Confidence 7799999954211 112223478899999999777322 22333334442 47899999887
No 264
>PLN03126 Elongation factor Tu; Provisional
Probab=99.11 E-value=2.4e-09 Score=106.67 Aligned_cols=65 Identities=22% Similarity=0.116 Sum_probs=47.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.++|++|+++|-......+..+|++++|+|......-.. .+++..+.. ..+| ++++.||.|+.+
T Consensus 146 i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~-----~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 146 YAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ-----VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-----cCCCeEEEEEecccccC
Confidence 8899999999998777777889999999999886533222 223333332 3567 778899999864
No 265
>PRK09866 hypothetical protein; Provisional
Probab=99.10 E-value=3.6e-09 Score=106.01 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHH------HHhccCCCccEEEec-ccccccccccccccccceeeeccCCCCC--c---hhhhhcccccc
Q psy16673 181 SFQSVKCYFEEIR------EQRQDFQEIPIVVAG-NKSDMTSHHRAVHLEDVDILDTCGDLQF--P---AMRRLSIATAH 248 (373)
Q Consensus 181 s~~~l~~~~~~i~------~~~~~~~~~pi~ivg-nK~Dl~~~~r~~~~~~~~~~dtag~~~~--~---~~~~~s~~~a~ 248 (373)
+.+.+..|...+. ++. ...++|++-|- -|... ......++-+.||+|...- . .+....+..+|
T Consensus 186 ~lndivr~~~~l~~~~p~d~ya-~~~~~p~iev~f~hl~g----~l~~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eAD 260 (741)
T PRK09866 186 SLNDLVRLAKALDVDFPFSAYA-AIEHIPVIEVEFVHLAG----LESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARAS 260 (741)
T ss_pred hHHHHHHHHHhhcCCCcHHHHh-hhhcCceeeeeeeeccc----cccccCCEEEEECCCCCCccchHHHHHHHHHHhhCC
Confidence 5666666665532 221 12456777443 35432 2233456778999997542 2 12334799999
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccch-----hhhhhHHHHHhhhc-
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQ-----SVKCYFEEIREQRQ- 322 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r-----~v~~~~~~~~a~~~- 322 (373)
.+++|.|.+...+..+- .+.+.+.+... ..| +++|.||.|+.+.. .+.......+....
T Consensus 261 vVLFVVDat~~~s~~De-eIlk~Lkk~~K--~~P------------VILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i 325 (741)
T PRK09866 261 AVLAVLDYTQLKSISDE-EVREAILAVGQ--SVP------------LYVLVNKFDQQDRNSDDADQVRALISGTLMKGCI 325 (741)
T ss_pred EEEEEEeCCCCCChhHH-HHHHHHHhcCC--CCC------------EEEEEEcccCCCcccchHHHHHHHHHHHHHhcCC
Confidence 99999999886655542 23344433211 134 45999999985321 11111111222211
Q ss_pred -CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 -DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 -~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+|.+||++|.|++++++.+...-
T Consensus 326 ~f~eIfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 326 TPQQIFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHhCC
Confidence 23589999999999999999999843
No 266
>KOG0072|consensus
Probab=99.09 E-value=2.5e-10 Score=92.46 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=51.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++||.+|+...+..+..||.+.+++|+|.|..|..-...... ++..+.+- +.++..++++.||.|...
T Consensus 64 ~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~--eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 64 FQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE--ELQHAKLLVFANKQDYSG 133 (182)
T ss_pred ceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH--hhcCceEEEEeccccchh
Confidence 9999999999999999999999999999999998764433322 22222221 225677888888888753
No 267
>PRK00007 elongation factor G; Reviewed
Probab=99.09 E-value=4.1e-09 Score=110.22 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=49.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|.......++.+|++++|.|....-..+....|. .+.+ ..+|++++.||.|+..
T Consensus 77 ~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 77 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH-----cCCCEEEEEECCCCCC
Confidence 899999999988777777889999999999987654444433332 2333 3578899999999975
No 268
>KOG0393|consensus
Probab=99.08 E-value=1.2e-10 Score=101.21 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+||||||+.|..+|+.+|+++|.+++||++.++.||+++.+ |+.++..+++. +|++ |||.|.|
T Consensus 55 L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~--vpii------------LVGtk~D 120 (198)
T KOG0393|consen 55 LGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN--VPII------------LVGTKAD 120 (198)
T ss_pred EeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC--CCEE------------EEeehHH
Confidence 6799999999999999999999999999999999999999888 99999999964 6665 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
|..+.
T Consensus 121 Lr~d~ 125 (198)
T KOG0393|consen 121 LRDDP 125 (198)
T ss_pred hhhCH
Confidence 98544
No 269
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.08 E-value=6.5e-10 Score=91.97 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=87.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeeee
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYC 90 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (373)
||++||+.|+|||||++++.+.... +.-|-. .++...+...+..+. +........-+..+||++++++|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq~i~~~~~~IDTPGEyiE--------~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQAIEYYDNTIDTPGEYIE--------NPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC--cCccceeEecccEEECChhhee--------CHHHHHHHHHHHhhCCEEEEEec
Confidence 8999999999999999999855331 111111 222222222222222 11222223336789999999999
Q ss_pred ccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhhhhhcCe
Q psy16673 91 ELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLSIATAHA 169 (373)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~~~~~~~ 169 (373)
...............-++|++.|++|+|+...+. +.. ........+++.
T Consensus 73 at~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~------------------------------~i~~a~~~L~~aG~~~ 122 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDA------------------------------NIERAKKWLKNAGVKE 122 (143)
T ss_pred CCCCCccCCchhhcccCCCEEEEEECccCccchh------------------------------hHHHHHHHHHHcCCCC
Confidence 8887777777777777999999999999662111 111 111222345666
Q ss_pred EEEEEeCCChhhHHHHHHHHH
Q psy16673 170 FLLVYSTTCLESFQSVKCYFE 190 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~ 190 (373)
+ +..+....+..+.+..|++
T Consensus 123 i-f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 123 I-FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred e-EEEECCCCcCHHHHHHHHh
Confidence 5 6667777788888887765
No 270
>KOG0095|consensus
Probab=99.07 E-value=1.4e-10 Score=94.27 Aligned_cols=53 Identities=30% Similarity=0.577 Sum_probs=50.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
+++|||+|+++|++++..||+.+|+++++||+++..||+-+..|..++..+..
T Consensus 58 lqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan 110 (213)
T KOG0095|consen 58 LQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYAN 110 (213)
T ss_pred EEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999998755
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.07 E-value=1.2e-09 Score=114.29 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=52.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+.+|......++..+|++++|+|.+..........|. .+.. ..+|++++.||.|+..
T Consensus 62 i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~-----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 62 INLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK-----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred EEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH-----cCCCEEEEEECCCCCC
Confidence 999999999998888888899999999999998876665544443 2332 3689999999999875
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.06 E-value=2e-09 Score=99.70 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred eeeeccccccch----hHhHHhhhh---hcCeEEEEEeCCChhh---HHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQF----PAMRRLSIA---TAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~----~~~~~~~~~---~~~~~i~v~dv~~~~s---~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+-|.+|..+= ..+-..|++ .+-.++.|.|++..+. .++.+....++..+.....+-|.+||.||+|+.
T Consensus 209 fv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~ 288 (369)
T COG0536 209 FVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLP 288 (369)
T ss_pred EEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCC
Confidence 777888874322 234444444 4788889999886653 667777778888887666677888888888855
No 273
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.05 E-value=2.4e-09 Score=96.52 Aligned_cols=67 Identities=10% Similarity=-0.012 Sum_probs=48.7
Q ss_pred eeeeccccccc-------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|.++ |+.....++...|.++.+.+..++.---....|.+-+... -+.+++++-|-+|...
T Consensus 89 l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~----~~~~~i~~VtQ~D~a~ 162 (296)
T COG3596 89 LVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG----LDKRVLFVVTQADRAE 162 (296)
T ss_pred eEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc----cCceeEEEEehhhhhc
Confidence 89999999655 6677777888999888889988875333334444444433 3478889999999764
No 274
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.05 E-value=9.6e-10 Score=105.33 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCceeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 140 PKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 140 ~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+..+.+++.||+|+-+|.-.....+..+.|.++|.|.+..-.-+.+...+-.+. .+..++-|.||+||+.
T Consensus 73 g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle------~~LeIiPViNKIDLP~ 142 (603)
T COG0481 73 GETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE------NNLEIIPVLNKIDLPA 142 (603)
T ss_pred CCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH------cCcEEEEeeecccCCC
Confidence 345669999999999999888888999999999999988655555555444443 4677888999999986
No 275
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.04 E-value=2.3e-10 Score=99.96 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=62.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++.+..+ ..|++ |||||
T Consensus 53 ~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lVgNK 118 (182)
T cd04172 53 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKML------------LVGCK 118 (182)
T ss_pred EEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCEE------------EEeEC
Confidence 3578999999999999999999999999999999999999998 789999988764 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+|+.+.
T Consensus 119 ~DL~~~ 124 (182)
T cd04172 119 SDLRTD 124 (182)
T ss_pred hhhhcC
Confidence 998543
No 276
>PRK12739 elongation factor G; Reviewed
Probab=99.03 E-value=1e-08 Score=107.31 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=50.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+.+|.......++.+|++++|.|....-.-.... .+..+.. ...|++++.||.|+..
T Consensus 75 i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 75 INIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECCCCCC
Confidence 899999999988888888899999999999988754333322 2222332 3588899999999985
No 277
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.03 E-value=4.1e-09 Score=97.25 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=82.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee--cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE--DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
++....|+|.|.||||||||++.+++ ..|-+. .|+||.+.++....++
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~------AkpEvA~YPFTTK~i~vGhfe~~~------------------------ 214 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTT------AKPEVAPYPFTTKGIHVGHFERGY------------------------ 214 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhc------CCCccCCCCccccceeEeeeecCC------------------------
Confidence 44567899999999999999999983 345555 6688999988877663
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-------
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP------- 157 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~------- 157 (373)
.++|+.||+|.-+-+
T Consensus 215 ----------------------------------------------------------~R~QvIDTPGlLDRPl~ErN~I 236 (346)
T COG1084 215 ----------------------------------------------------------LRIQVIDTPGLLDRPLEERNEI 236 (346)
T ss_pred ----------------------------------------------------------ceEEEecCCcccCCChHHhcHH
Confidence 239999999942211
Q ss_pred -HhHHhhhhh-cCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 158 -AMRRLSIAT-AHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 158 -~~~~~~~~~-~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
......+++ +++++++||.+... +.+.=..++++++..- ..|+++|.||.|+.+
T Consensus 237 E~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f----~~p~v~V~nK~D~~~ 294 (346)
T COG1084 237 ERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF----KAPIVVVINKIDIAD 294 (346)
T ss_pred HHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc----CCCeEEEEecccccc
Confidence 111122333 57888899876643 4454455777777763 488999999999875
No 278
>KOG0091|consensus
Probab=99.02 E-value=2.9e-10 Score=94.01 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=49.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 276 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~ 276 (373)
.+++||||||++|++++..||+++-+++++||+||+.||+.+..|.++...+.
T Consensus 59 klqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~ 111 (213)
T KOG0091|consen 59 KLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMAT 111 (213)
T ss_pred EEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhc
Confidence 36799999999999999999999999999999999999999999998877653
No 279
>PRK00049 elongation factor Tu; Reviewed
Probab=99.02 E-value=9.3e-09 Score=100.72 Aligned_cols=65 Identities=22% Similarity=0.134 Sum_probs=45.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEE-Eecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV-VAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~-ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|.......+..+|++++|.|......-. ...++..+.. ..+|.+ ++.||.|+.+
T Consensus 77 i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~-----~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 77 YAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ-----VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred EEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH-----cCCCEEEEEEeecCCcc
Confidence 789999999888776667788999999999987643222 2223333333 247765 5789999863
No 280
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.00 E-value=4.2e-10 Score=98.00 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=62.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++.+.++ .+|++ |||||
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~--~~~ii------------lVgnK 114 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP--NTKVL------------LVGCK 114 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC--CCCEE------------EEEEC
Confidence 3477999999999999999999999999999999999999996 789999988764 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+||.+.
T Consensus 115 ~DL~~~ 120 (178)
T cd04131 115 TDLRTD 120 (178)
T ss_pred hhhhcC
Confidence 999653
No 281
>KOG1145|consensus
Probab=98.99 E-value=1.1e-08 Score=99.56 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=51.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|+..|.+++.....-+|.+++|....| +.+.+.|+.. + ...+|++++-||+|.+.
T Consensus 203 iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhA----k-----~A~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 203 ITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHA----K-----SANVPIVVAINKIDKPG 267 (683)
T ss_pred EEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHH----H-----hcCCCEEEEEeccCCCC
Confidence 8899999999999999999999999999998877 4566655432 2 15899999999999875
No 282
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.98 E-value=9e-09 Score=91.01 Aligned_cols=69 Identities=23% Similarity=0.174 Sum_probs=40.8
Q ss_pred eeeeccccccchh--------HhH---HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFP--------AMR---RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~--------~~~---~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.++||||..... .+. .....+.|++++|.++.. -+-+ -...++.+.+..+...-.+++++.|+.|.
T Consensus 51 i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~ 128 (196)
T cd01852 51 VNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDD 128 (196)
T ss_pred EEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccc
Confidence 8899999954331 111 112356799999999876 2222 22334445444332233577888898887
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 129 l~ 130 (196)
T cd01852 129 LE 130 (196)
T ss_pred cC
Confidence 64
No 283
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.97 E-value=7.3e-10 Score=96.30 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|.+++....+ ++|++ |||||
T Consensus 49 v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgnK 114 (176)
T cd04133 49 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP--NVPIV------------LVGTK 114 (176)
T ss_pred EEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeC
Confidence 4577999999999999999999999999999999999999998 679999877653 46655 99999
Q ss_pred cccccchh
Q psy16673 302 TCLESFQS 309 (373)
Q Consensus 302 ~Dl~~~r~ 309 (373)
+|+.+.+.
T Consensus 115 ~Dl~~~~~ 122 (176)
T cd04133 115 LDLRDDKQ 122 (176)
T ss_pred hhhccChh
Confidence 99976543
No 284
>KOG0090|consensus
Probab=98.97 E-value=6.3e-09 Score=90.21 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=48.4
Q ss_pred eeeeccccccchhHhHHhhhh---hcCeEEEEEeC-CChhhHHHHHHH-HHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIA---TAHAFLLVYST-TCLESFQSVKCY-FEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~---~~~~~i~v~dv-~~~~s~~~l~~~-~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.||+.+.+.-...++. .+-+++||.|. ........+.++ ++-+...+.-...+|+.|+.||.|+.-
T Consensus 84 ~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 84 VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred eEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 789999999887654444555 68899999874 334444445443 343444322346899999999999974
No 285
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.96 E-value=1.2e-08 Score=109.07 Aligned_cols=62 Identities=26% Similarity=0.393 Sum_probs=50.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++...+..+|++++|+|+++ +.+++.+.. +.. ..+|+++++||+|+..
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~----lk~-----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINI----LRQ-----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHH----HHH-----cCCCEEEEEECCCCcc
Confidence 8999999999999988888899999999999986 556665542 222 3579999999999964
No 286
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.94 E-value=1e-09 Score=99.39 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=61.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++ ..|++++.+..+ ++|++ |||||
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lVgNK 126 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP--STRIL------------LIGCK 126 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 3478999999999999999999999999999999999999985 789999987654 35655 99999
Q ss_pred cccccc
Q psy16673 302 TCLESF 307 (373)
Q Consensus 302 ~Dl~~~ 307 (373)
+|+...
T Consensus 127 ~DL~~~ 132 (232)
T cd04174 127 TDLRTD 132 (232)
T ss_pred cccccc
Confidence 998643
No 287
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.94 E-value=1.8e-08 Score=99.78 Aligned_cols=66 Identities=21% Similarity=0.123 Sum_probs=46.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|++|++.|-......+..+|++++|.|+... ..-+..+.+ . +.... .-.++++|.||+|+.+
T Consensus 119 i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~-i~~~l---gi~~iIVvlNKiDlv~ 185 (460)
T PTZ00327 119 VSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-A-AVEIM---KLKHIIILQNKIDLVK 185 (460)
T ss_pred EeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-H-HHHHc---CCCcEEEEEecccccC
Confidence 88999999999987777778899999999999863 121111121 1 22221 2346888999999874
No 288
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.94 E-value=1.2e-08 Score=101.31 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=45.3
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hH----HHHHHHHHHHHHHhccCCCcc-EEEeccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SF----QSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMT 214 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~----~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~ 214 (373)
.+.+.|++|+.+|.......+..+|++++|.|..... .| ...+.|. .+.. ..+| ++++-||.|..
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~-----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT-----LGVKQMIVCINKMDDK 158 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH-----cCCCeEEEEEEccccc
Confidence 3899999999999887777789999999999987632 11 1111222 2222 2455 67899999954
No 289
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.94 E-value=1.1e-09 Score=97.32 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=60.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++..|++.+..... .++|++ +||||+
T Consensus 49 v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~-~~~pii------------lVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS-EDAELL------------LVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCcEE------------EEEECc
Confidence 4567999999999999999999999999999999999999999999998876543 345655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (202)
T cd04120 116 D 116 (202)
T ss_pred c
Confidence 9
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.94 E-value=3.1e-08 Score=87.70 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=51.6
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh----hhhhHHHHHhhhc
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS----VKCYFEEIREQRQ 322 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~----v~~~~~~~~a~~~ 322 (373)
++.++.++|+++..+... .....+ ..+=++++||+|+..... ...++.+.+ ..
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------------------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~--~~ 169 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-------------------TRSDLLVINKIDLAPMVGADLGVMERDAKKM--RG 169 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-------------------hhccEEEEEhhhccccccccHHHHHHHHHHh--CC
Confidence 467899999998766321 111111 112259999999974211 112222232 34
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++++|||++|+|++++|+.+.+.+
T Consensus 170 ~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 170 EKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999999754
No 291
>PLN03127 Elongation factor Tu; Provisional
Probab=98.93 E-value=3.1e-08 Score=98.22 Aligned_cols=65 Identities=23% Similarity=0.127 Sum_probs=45.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+.||+|+.+|..........+|++++|.|......-+. .+.+..+.. ..+| ++++.||.|+.+
T Consensus 126 i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~-----~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 126 YAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVVFLNKVDVVD 191 (447)
T ss_pred EEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH-----cCCCeEEEEEEeeccCC
Confidence 7899999999987666666778999999999876432221 122222222 3577 567899999864
No 292
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.92 E-value=4.7e-09 Score=110.21 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.+|||+|+.+|.......++.+|++++|+|....-..+....|.. +.+ ..+|++++.||.|...
T Consensus 86 ~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 86 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK-----ENVKPVLFINKVDRLI 152 (720)
T ss_pred eEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH-----cCCCEEEEEEChhccc
Confidence 349999999999998888889999999999999877433332222322 222 3578889999999864
No 293
>KOG0077|consensus
Probab=98.91 E-value=1.2e-08 Score=84.86 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=57.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+|.+|+..-+..+..|+..++++++.+|+.+.+-|...+.-++.+...- ....+|++|.|||+|...
T Consensus 66 ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 66 FTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPY 135 (193)
T ss_pred EEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCC
Confidence 8899999999888999999999999999999999988877655444433221 125799999999999985
No 294
>KOG0094|consensus
Probab=98.90 E-value=1.3e-09 Score=92.99 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=60.7
Q ss_pred CccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC
Q psy16673 201 EIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 278 (373)
Q Consensus 201 ~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~ 278 (373)
.|-+-.+.....+.+ + ..++++||||||++|+++.|.|++++.++|+|||++++.||++..+|++.+.+.++.
T Consensus 54 TIGiDFlskt~~l~d--~---~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs 126 (221)
T KOG0094|consen 54 TIGIDFLSKTMYLED--R---TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGS 126 (221)
T ss_pred eeeeEEEEEEEEEcC--c---EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCC
Confidence 344444455555554 3 456789999999999999999999999999999999999999999999999887663
No 295
>KOG0395|consensus
Probab=98.89 E-value=2.3e-09 Score=94.54 Aligned_cols=66 Identities=39% Similarity=0.523 Sum_probs=61.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
++++||+|++.|..++..+++++++|++||+++++.||+.+..+++.+.+......+|++ +||||+
T Consensus 53 l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~Piv------------lVGNK~ 118 (196)
T KOG0395|consen 53 LEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPII------------LVGNKC 118 (196)
T ss_pred EEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEE------------EEEEcc
Confidence 459999999999999999999999999999999999999999999999888887788887 889885
No 296
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.89 E-value=1.8e-09 Score=94.92 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=60.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++..|++++.+..+ ++|++ |||||.
T Consensus 55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~--~~pii------------lVGNK~ 120 (189)
T cd04121 55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP--GVPKI------------LVGNRL 120 (189)
T ss_pred EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4477999999999999999999999999999999999999999999999987653 46655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 121 D 121 (189)
T cd04121 121 H 121 (189)
T ss_pred c
Confidence 9
No 297
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.89 E-value=2e-09 Score=94.73 Aligned_cols=73 Identities=21% Similarity=0.416 Sum_probs=62.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|+++|..+++.++++++++++|||++++.||+++.. |.+++....+ ++|++ |||||
T Consensus 51 ~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgNK 116 (191)
T cd01875 51 VSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP--NVPIL------------LVGTK 116 (191)
T ss_pred EEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEeC
Confidence 346799999999999999999999999999999999999999974 8888876543 46765 99999
Q ss_pred cccccchh
Q psy16673 302 TCLESFQS 309 (373)
Q Consensus 302 ~Dl~~~r~ 309 (373)
.||.+.+.
T Consensus 117 ~DL~~~~~ 124 (191)
T cd01875 117 KDLRNDAD 124 (191)
T ss_pred hhhhcChh
Confidence 99976543
No 298
>PRK13768 GTPase; Provisional
Probab=98.87 E-value=3.9e-08 Score=90.48 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred eeeeccccccchh---HhHHhhhhh-----cCeEEEEEeCCChhhHHHHH--HHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP---AMRRLSIAT-----AHAFLLVYSTTCLESFQSVK--CYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~---~~~~~~~~~-----~~~~i~v~dv~~~~s~~~l~--~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|+.++. .....+++. .+++++++|........... .|+....... ...|+++|.||+|+.
T Consensus 99 ~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~---~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 99 YVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR---LGLPQIPVLNKADLL 175 (253)
T ss_pred EEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH---cCCCEEEEEEhHhhc
Confidence 8899999987643 333333333 78999999996654333332 2333333222 478999999999997
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
+
T Consensus 176 ~ 176 (253)
T PRK13768 176 S 176 (253)
T ss_pred C
Confidence 5
No 299
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.86 E-value=9.1e-08 Score=90.80 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=59.1
Q ss_pred eeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccccc
Q psy16673 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306 (373)
Q Consensus 227 ~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~ 306 (373)
+.+|+|...-.. .....+|.++++.+.......+.++ ..+.+. +-++|.||||+..
T Consensus 153 iieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~------------------aDIiVVNKaDl~~ 208 (332)
T PRK09435 153 LVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIMEL------------------ADLIVINKADGDN 208 (332)
T ss_pred EEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhhh------------------hheEEeehhcccc
Confidence 566666542211 1345688888885533333333322 112111 1259999999865
Q ss_pred chh---hhhhHHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 307 FQS---VKCYFEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 307 ~r~---v~~~~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
... ...+....+.. .+..|++.+||++|.||+++++.+.+...-.
T Consensus 209 ~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 209 KTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred hhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 332 22222333332 2346899999999999999999999865433
No 300
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.86 E-value=2.4e-08 Score=93.05 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+...++|+++|.+||||||++|++++.
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999999954
No 301
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.86 E-value=2.8e-09 Score=94.52 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=96.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|.+++.+.++ ++|++ |||||+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~--~~pii------------lvgNK~ 109 (200)
T smart00176 44 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE--NIPIV------------LCGNKV 109 (200)
T ss_pred EEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4578999999999999999999999999999999999999999999999988753 46665 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+..+. ..++...+++|+||||++|.||+++|+.+++.+
T Consensus 110 Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 110 DVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9864 4455443 467888899999999999999999999999865
No 302
>KOG0705|consensus
Probab=98.86 E-value=5.6e-09 Score=101.45 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=87.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+|+-|||..+.|||+|+.||++++|.... .+.+..+.+.+.+++....
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~l----------------------------- 78 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHL----------------------------- 78 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceE-----------------------------
Confidence 5789999999999999999999999987653 4445566677777666655
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+.|.+|. ....|....|
T Consensus 79 --------------------------------------------------------Llirdeg~~-----~~aQft~wvd 97 (749)
T KOG0705|consen 79 --------------------------------------------------------LLIRDEGGH-----PDAQFCQWVD 97 (749)
T ss_pred --------------------------------------------------------eeeecccCC-----chhhhhhhcc
Confidence 778888774 2344567899
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
++||||.+.+..+|+.++.+...+..++. ...+|++++|++.
T Consensus 98 avIfvf~~~d~~s~q~v~~l~~~l~~~r~-r~~i~l~lvgtqd 139 (749)
T KOG0705|consen 98 AVVFVFSVEDEQSFQAVQALAHEMSSYRN-ISDLPLILVGTQD 139 (749)
T ss_pred ceEEEEEeccccCHHHHHHHHhhcccccc-cccchHHhhcCcc
Confidence 99999999999999999988877776654 3578888888753
No 303
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.85 E-value=3.9e-09 Score=95.08 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=61.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.+|+++|++++|||++++.||+++. .|..++....+ ++|++ |||||
T Consensus 49 v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~--~~pii------------LVgnK 114 (222)
T cd04173 49 IELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP--NAKVV------------LVGCK 114 (222)
T ss_pred EEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEEC
Confidence 35779999999999999999999999999999999999999995 47777765543 35655 99999
Q ss_pred cccccch
Q psy16673 302 TCLESFQ 308 (373)
Q Consensus 302 ~Dl~~~r 308 (373)
+|+....
T Consensus 115 ~DL~~~~ 121 (222)
T cd04173 115 LDMRTDL 121 (222)
T ss_pred cccccch
Confidence 9996543
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.84 E-value=1.2e-07 Score=84.61 Aligned_cols=55 Identities=13% Similarity=0.060 Sum_probs=38.7
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhh--cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQR--QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~--~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++++||+|+.+.............+. ..++++++||++|.|++++|+.+.+.+
T Consensus 150 a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 150 ADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred CCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3569999999975433222222222222 348999999999999999999998853
No 305
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.84 E-value=4.9e-09 Score=90.98 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=61.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++.. |..++....+ ++|++ +||||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~--~~pii------------lvgnK 114 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP--KTPFL------------LVGTQ 114 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 346799999999999999999999999999999999999999975 8888877543 46655 99999
Q ss_pred cccccch
Q psy16673 302 TCLESFQ 308 (373)
Q Consensus 302 ~Dl~~~r 308 (373)
.|+....
T Consensus 115 ~Dl~~~~ 121 (175)
T cd01874 115 IDLRDDP 121 (175)
T ss_pred HhhhhCh
Confidence 9986543
No 306
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.82 E-value=4e-08 Score=89.95 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
....++|+++|.+|||||||+|.+++..
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~ 55 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGER 55 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4557899999999999999999999553
No 307
>PTZ00099 rab6; Provisional
Probab=98.80 E-value=5.5e-09 Score=90.81 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=60.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+..+.+... .++|++ |||||+
T Consensus 29 v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~-~~~pii------------lVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIA------------LVGNKT 95 (176)
T ss_pred EEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999998877643 245544 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 96 DL 97 (176)
T PTZ00099 96 DL 97 (176)
T ss_pred cc
Confidence 96
No 308
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.79 E-value=7e-09 Score=89.70 Aligned_cols=68 Identities=32% Similarity=0.424 Sum_probs=60.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++..|...+.+.....++|++ +||||+|
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii------------lvgNK~D 118 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV------------LVGNKVD 118 (172)
T ss_pred EEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999888876554566765 9999998
No 309
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.78 E-value=1e-08 Score=87.43 Aligned_cols=112 Identities=29% Similarity=0.373 Sum_probs=100.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..+++.++++++++++|||++++.||+++..|...+.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv------------iv~nK~D 117 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII------------LVGNKVD 117 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999998886554556655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+...++..++...+++|++|||++|.|++++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 118 LESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred chhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 98777888778888888889999999999999999999999874
No 310
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.77 E-value=1.1e-08 Score=86.96 Aligned_cols=112 Identities=32% Similarity=0.397 Sum_probs=101.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|.+++.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 117 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV------------LVGNKCD 117 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 3568999999999999999999999999999999999999999999999887655566655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++.++++|+||||++|.||+++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 118 LEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 98888888888888988889999999999999999999999874
No 311
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.77 E-value=9.1e-09 Score=89.20 Aligned_cols=70 Identities=26% Similarity=0.481 Sum_probs=60.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||.
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~--~~pii------------lvgnK~ 115 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 115 (174)
T ss_pred EEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEeeCh
Confidence 46799999999999999999999999999999999999999974 8887776543 46655 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 116 Dl~~~ 120 (174)
T cd01871 116 DLRDD 120 (174)
T ss_pred hhccC
Confidence 99654
No 312
>KOG0097|consensus
Probab=98.76 E-value=5.6e-09 Score=84.25 Aligned_cols=54 Identities=24% Similarity=0.409 Sum_probs=49.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
.+++|||+|+++|+.+++.+|+++.+.+.|||++.+.++..+.+|....+....
T Consensus 61 klqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltn 114 (215)
T KOG0097|consen 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN 114 (215)
T ss_pred EEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCC
Confidence 367999999999999999999999999999999999999999999987766443
No 313
>KOG0081|consensus
Probab=98.75 E-value=6.6e-09 Score=85.56 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=49.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
-+++|||+||++|++++...++.|-+++++||+|+..||-++..|..++.-+
T Consensus 68 hLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h 119 (219)
T KOG0081|consen 68 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH 119 (219)
T ss_pred EEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence 3789999999999999999999999999999999999999999999998765
No 314
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.75 E-value=1.4e-08 Score=86.65 Aligned_cols=112 Identities=30% Similarity=0.394 Sum_probs=101.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|...+.+.....++|++ +||||+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 117 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI------------LVGNKCD 117 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECCc
Confidence 4569999999999999999999999999999999999999999999998876655567766 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.++.++.+.+++..+++|+||||++|.||+++|+.+++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~ 161 (164)
T cd04175 118 LEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQ 161 (164)
T ss_pred chhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888998899999999999999999999999874
No 315
>KOG0088|consensus
Probab=98.73 E-value=7e-09 Score=85.39 Aligned_cols=52 Identities=37% Similarity=0.510 Sum_probs=49.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
++.+|||+||++|.++-|.||++++++++|||+|++.||+.++.|..+++..
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~m 114 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTM 114 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999999874
No 316
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=5.2e-08 Score=92.58 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=46.0
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHHHHHH--HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKC--YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~l~~--~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.|.|++|+-.|..-.....+.||++++|.|..+.+ +|+.--+ -.-.+.... .--.++++-||.|+.+
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl---Gi~~lIVavNKMD~v~ 159 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL---GIKQLIVAVNKMDLVS 159 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc---CCceEEEEEEcccccc
Confidence 4999999999888877777788999999999998763 1110000 111122222 2234677889999875
No 317
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.72 E-value=1.4e-08 Score=88.70 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=60.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..+++.++++++++++|||++++.||+++..|++++.+..+. .+| ++||||+
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~-~~p-------------ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIP-------------ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCE-------------EEEEEch
Confidence 35779999999999999999999999999999999999999999999988776432 233 3889999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9864
No 318
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.71 E-value=2.1e-08 Score=90.20 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=60.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+..+.+... ..+|++ +||||+
T Consensus 44 ~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~-~~~piI------------lVgNK~ 110 (220)
T cd04126 44 YNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTAN-EDCLFA------------VVGNKL 110 (220)
T ss_pred EEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcEE------------EEEECc
Confidence 3477999999999999999999999999999999999999999998877766432 245554 999999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 111 DL~~ 114 (220)
T cd04126 111 DLTE 114 (220)
T ss_pred cccc
Confidence 9864
No 319
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.70 E-value=2.3e-08 Score=86.12 Aligned_cols=111 Identities=9% Similarity=0.074 Sum_probs=86.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..+++.++++++++++|||++++.+|+++..|+.++.......++|++ ||+||
T Consensus 52 ~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 119 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL------------VFANK 119 (168)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE------------EEEEC
Confidence 345789999999999999999999999999999999999999998877766654332345655 99999
Q ss_pred cccccchhhhhhHHHHHh---h--hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE---Q--RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a---~--~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+... +..++.+... + ...++++||||++|.||+++|+.|.+
T Consensus 120 ~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 120 QDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 998643 3333333332 1 23457999999999999999999875
No 320
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.70 E-value=2e-08 Score=88.22 Aligned_cols=68 Identities=29% Similarity=0.496 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+++|||+|+++|..++..++++++++++|||++++.||+++..|...+..... ..++|++ +||||
T Consensus 48 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lvgNK 115 (190)
T cd04144 48 MLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM------------IVGNK 115 (190)
T ss_pred EEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE------------EEEEC
Confidence 367899999999999999999999999999999999999999999998877644 2345554 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (190)
T cd04144 116 CD 117 (190)
T ss_pred hh
Confidence 98
No 321
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.69 E-value=1.7e-08 Score=87.52 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=60.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..++..++++++++++|||++++.||+++..|+.++.......+.|++ +||||+
T Consensus 63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV------------LCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEeCc
Confidence 34789999999999999999999999999999999999999999999998876544445555 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 131 D 131 (180)
T cd04127 131 D 131 (180)
T ss_pred c
Confidence 9
No 322
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.69 E-value=2.2e-08 Score=85.98 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=95.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..+++..+..+|++++|||++++.||+++..|.+.+.+.+. .+|++ +||||+
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~pii------------iv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG--NIPIV------------LCGNKV 114 (166)
T ss_pred EEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEEch
Confidence 4577999999999999999999999999999999999999999999999988765 56655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+. ..+..+++..+++|+||||++|.||+++|+.+++.+
T Consensus 115 Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 115 DIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 9973 3333 345567777889999999999999999999999854
No 323
>KOG0083|consensus
Probab=98.68 E-value=1.6e-08 Score=80.93 Aligned_cols=54 Identities=28% Similarity=0.476 Sum_probs=50.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~ 277 (373)
.+++|||+||++|++++..||+.+|+.+++||++++.||++.+.|..++.++..
T Consensus 48 klqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k 101 (192)
T KOG0083|consen 48 KLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAK 101 (192)
T ss_pred EEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999988743
No 324
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.68 E-value=2.4e-08 Score=89.86 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=95.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.||+++..|++++.+.+. ++|++ +||||+
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~--~~pii------------lvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIV------------LCGNKV 127 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEEch
Confidence 4577999999999999999999999999999999999999999999999987653 46655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.. +.+..++. .+++..+++||||||++|.||+++|+.+++.+
T Consensus 128 Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred hhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 9964 44444444 67778899999999999999999999999865
No 325
>PTZ00369 Ras-like protein; Provisional
Probab=98.67 E-value=3.3e-08 Score=86.78 Aligned_cols=69 Identities=35% Similarity=0.505 Sum_probs=61.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|++.|..+++.++++++++++|||++++.+|+++..|.+++.+.....++|++ +||||+|
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~D 121 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI------------LVGNKCD 121 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999998877555566755 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 122 l 122 (189)
T PTZ00369 122 L 122 (189)
T ss_pred c
Confidence 5
No 326
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.67 E-value=3.1e-08 Score=87.86 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|+++|..+++.++++++++++|||++++.||+++..|+.++..... ...+|++ +|||
T Consensus 51 ~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii------------lv~N 118 (201)
T cd04107 51 RLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL------------LLAN 118 (201)
T ss_pred EEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE------------EEEE
Confidence 467999999999999999999999999999999999999999999988876422 2345655 9999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 119 K~D 121 (201)
T cd04107 119 KCD 121 (201)
T ss_pred CCC
Confidence 999
No 327
>KOG4252|consensus
Probab=98.65 E-value=9.5e-09 Score=86.33 Aligned_cols=67 Identities=25% Similarity=0.396 Sum_probs=61.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+..+|||+|++.|.+++..||++|.+.++||+-|++.||+.+.+|++++...+.. +|.+ +|-||.|
T Consensus 70 r~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~--IPtV------------~vqNKID 135 (246)
T KOG4252|consen 70 RSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER--IPTV------------FVQNKID 135 (246)
T ss_pred HHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc--CCeE------------Eeeccch
Confidence 3688999999999999999999999999999999999999999999999998875 7766 8888888
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 136 l 136 (246)
T KOG4252|consen 136 L 136 (246)
T ss_pred h
Confidence 3
No 328
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.64 E-value=4e-08 Score=84.15 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..++++++++++|||++++.||+.+..|.+.+...... ..| +++||||+|
T Consensus 52 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~------------iiiv~nK~D 118 (166)
T cd04122 52 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTV------------IFLIGNKAD 118 (166)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCe------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999888765432 345 459999988
No 329
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.64 E-value=4e-08 Score=85.86 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=60.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 115 (187)
T cd04132 50 ELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCP--GTPIM------------LVGLKT 115 (187)
T ss_pred EEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeCh
Confidence 46799999999999999999999999999999999999999975 8877765432 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 116 Dl~~~~ 121 (187)
T cd04132 116 DLRKDK 121 (187)
T ss_pred hhhhCc
Confidence 987554
No 330
>PTZ00258 GTP-binding protein; Provisional
Probab=98.63 E-value=3.9e-07 Score=88.16 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
...++|+|||.||||||||+|+++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~ 43 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCK 43 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhc
Confidence 4467999999999999999999984
No 331
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.63 E-value=4e-08 Score=83.78 Aligned_cols=112 Identities=8% Similarity=0.068 Sum_probs=86.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..+++.++++++++++|||++++.+|+++..++..+.......++|++ |++||
T Consensus 43 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 110 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLL------------VFANK 110 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEE------------EEEEC
Confidence 345789999999999999999999999999999999999999998877766543332345555 99999
Q ss_pred cccccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.|+..... ..+..+.++ ...++.+++|||++|.||+++|+.|.+
T Consensus 111 ~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 111 QDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99864322 122223332 233567889999999999999999864
No 332
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.62 E-value=5.7e-08 Score=83.53 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=87.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
++++|++|+..+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||.|+
T Consensus 45 ~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil------------iv~NK~Dl 112 (167)
T cd04161 45 VCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL------------VLANKQDK 112 (167)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE------------EEEeCCCC
Confidence 468999999999999999999999999999999999999999998888765443456655 99999999
Q ss_pred ccchhhh----hhHHHHHhhhc--CCeEEEeccCCC------cCHHHHHHHHHH
Q psy16673 305 ESFQSVK----CYFEEIREQRQ--DFQLLECSAKDN------YNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~r~v~----~~~~~~~a~~~--~~~~~E~SAktg------~nv~elf~~i~~ 346 (373)
...+... ....+.++... .+++++|||++| .|+++.|++|++
T Consensus 113 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 113 KNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 7765322 11223444333 467888999998 899999999975
No 333
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.62 E-value=4.8e-08 Score=86.31 Aligned_cols=66 Identities=29% Similarity=0.439 Sum_probs=55.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+++|||+|++. .+++.++++++++++|||++++.||+++. .|.+++....+ .+|++ +||||+|
T Consensus 68 l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~--~~pii------------lvgNK~D 131 (195)
T cd01873 68 LRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP--RVPVI------------LVGCKLD 131 (195)
T ss_pred EEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEchh
Confidence 56999999986 36778999999999999999999999997 49988877653 45655 9999999
Q ss_pred ccc
Q psy16673 304 LES 306 (373)
Q Consensus 304 l~~ 306 (373)
+..
T Consensus 132 L~~ 134 (195)
T cd01873 132 LRY 134 (195)
T ss_pred ccc
Confidence 864
No 334
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.62 E-value=3.9e-08 Score=84.84 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=61.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..+++.++++++++++|||++++.+|+.+..|++++.+......+|+ ++||||.
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i------------ilVgnK~ 116 (170)
T cd04108 49 FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLL------------FLVGTKK 116 (170)
T ss_pred EEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeE------------EEEEECh
Confidence 3578999999999999999999999999999999999999999999999876544334454 4999999
Q ss_pred ccc
Q psy16673 303 CLE 305 (373)
Q Consensus 303 Dl~ 305 (373)
|+.
T Consensus 117 Dl~ 119 (170)
T cd04108 117 DLS 119 (170)
T ss_pred hcC
Confidence 984
No 335
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.61 E-value=4.7e-08 Score=85.86 Aligned_cols=74 Identities=26% Similarity=0.401 Sum_probs=63.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.++++++++++|||++++.||+++.. |...+....+ ++|++ +||||
T Consensus 48 ~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~--~~pii------------lvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP--GVKLV------------LVALK 113 (189)
T ss_pred EEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 356799999999999999999999999999999999999999974 8888876543 45655 99999
Q ss_pred cccccchhh
Q psy16673 302 TCLESFQSV 310 (373)
Q Consensus 302 ~Dl~~~r~v 310 (373)
+|+...+..
T Consensus 114 ~Dl~~~~~~ 122 (189)
T cd04134 114 CDLREARNE 122 (189)
T ss_pred hhhccChhh
Confidence 999776553
No 336
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.61 E-value=1.5e-07 Score=85.68 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=35.2
Q ss_pred eeeeccccccchhHhHHhhh--------hhcCeEEEEEeCCChh---hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSI--------ATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~dv~~~~---s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+-++|||||.++...+.... ...-+++++.|..... .|-. .++-.+.-+.. -..|.+.|.||+|+
T Consensus 93 y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~--~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 93 YLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLR--LELPHVNVLSKIDL 168 (238)
T ss_dssp EEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHH--HTSEEEEEE--GGG
T ss_pred EEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhh--CCCCEEEeeeccCc
Confidence 88999999998865555433 3456777888865443 3322 22222211110 37999999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 169 ~~ 170 (238)
T PF03029_consen 169 LS 170 (238)
T ss_dssp S-
T ss_pred cc
Confidence 86
No 337
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.61 E-value=5.4e-08 Score=84.38 Aligned_cols=114 Identities=6% Similarity=0.035 Sum_probs=86.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+..|..+++.++++++++++|||++++.++++...|+..+.......++|++ +||||
T Consensus 56 ~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii------------lv~NK 123 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL------------VFANK 123 (175)
T ss_pred CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE------------EEEeC
Confidence 345789999999999999999999999999999999999999998887776554322345655 99999
Q ss_pred cccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 302 TCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 302 ~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+.+... +....+...+....+.|++|||++|.||+++|+.|.+.
T Consensus 124 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 124 QDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred cCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 99865432 11111111122234568899999999999999999875
No 338
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.60 E-value=7.6e-07 Score=84.62 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=52.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||++|+...+..|..++.+++++++|.|+++- ..+......++.+.+.. .....|++|++||.|+.
T Consensus 163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~-~~~~~pill~~NK~D~f 241 (317)
T cd00066 163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR-WFANTSIILFLNKKDLF 241 (317)
T ss_pred EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc-cccCCCEEEEccChHHH
Confidence 99999999999999999999999999999998863 22332223333333321 22579999999999988
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 242 ~ 242 (317)
T cd00066 242 E 242 (317)
T ss_pred H
Confidence 5
No 339
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.59 E-value=7.9e-08 Score=81.34 Aligned_cols=111 Identities=27% Similarity=0.402 Sum_probs=98.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.+|+++..|...+.+.....+.|++ +|+||+|
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------vv~nK~D 117 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV------------LVGNKCD 117 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 3678999999999999999999999999999999999999999999998887655556655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.. +.+...+...++...+++|+||||++|.|++++|+.+++.
T Consensus 118 l~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 118 LAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred ccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 876 5566677888888889999999999999999999999874
No 340
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.58 E-value=6.8e-08 Score=82.44 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=59.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++||++|+++|..+++.++++++++++|||++++.||+++..|++.+....+ ..+|++ +||||.
T Consensus 49 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~~ii------------lvgnK~ 115 (161)
T cd04117 49 VRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAP-EGVQKI------------LIGNKA 115 (161)
T ss_pred EEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999998887643 245554 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (161)
T cd04117 116 D 116 (161)
T ss_pred c
Confidence 7
No 341
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.58 E-value=7.6e-08 Score=82.08 Aligned_cols=110 Identities=26% Similarity=0.388 Sum_probs=93.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-.+++|||+|++.|..+++.++++++++++|||++++.+|+++..|+..+.+..+ ++|++ +|+||+
T Consensus 49 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~p~i------------vv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP--EIPCI------------VVANKI 114 (161)
T ss_pred EEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCcEE------------EEEECc
Confidence 3467999999999999999999999999999999999999999999999876543 35655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+... + .++...+++..++++++|||++|.|++++|+.+++.+.
T Consensus 115 Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 115 DLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred cCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 98532 2 23455667777899999999999999999999998653
No 342
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.57 E-value=6.5e-08 Score=86.79 Aligned_cols=69 Identities=26% Similarity=0.269 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|++.|..+.+.+++++|++++|||++++.||+++..|.+.+.+.... .++| +++|||
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~p------------iilVgN 117 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPL------------VVLVGN 117 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCce------------EEEEEE
Confidence 35789999999999999999999999999999999999999999999999886542 2334 459999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 118 K~D 120 (215)
T cd04109 118 KTD 120 (215)
T ss_pred Ccc
Confidence 999
No 343
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.56 E-value=1.1e-07 Score=81.44 Aligned_cols=69 Identities=43% Similarity=0.605 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|+++|..++..+++.++++++|||++++.||+++..|++.+.+.... .++|++ +|||
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~n 116 (165)
T cd04140 49 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIM------------LVGN 116 (165)
T ss_pred EEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEE------------EEEE
Confidence 45779999999999999999999999999999999999999999999888776432 346655 9999
Q ss_pred ccc
Q psy16673 301 TTC 303 (373)
Q Consensus 301 K~D 303 (373)
|+|
T Consensus 117 K~D 119 (165)
T cd04140 117 KCD 119 (165)
T ss_pred Ccc
Confidence 999
No 344
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.56 E-value=9.5e-08 Score=82.27 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=61.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++.+++++++|||++++.||+++.. |...+....+ ++|++ +||||+
T Consensus 47 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lv~nK~ 112 (174)
T smart00174 47 ELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP--NTPII------------LVGTKL 112 (174)
T ss_pred EEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEecCh
Confidence 46799999999999999999999999999999999999999975 8888877543 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 113 Dl~~~~ 118 (174)
T smart00174 113 DLREDK 118 (174)
T ss_pred hhhhCh
Confidence 997543
No 345
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.56 E-value=9.4e-08 Score=87.61 Aligned_cols=117 Identities=34% Similarity=0.487 Sum_probs=98.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--------CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--------DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--------~~~~p~v~~~~~~~~~~~ 295 (373)
.+++|||+|++.|..++..++..++++++|||++++.||+++..|.+++.+... ..++| +
T Consensus 49 ~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p------------i 116 (247)
T cd04143 49 QLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP------------M 116 (247)
T ss_pred EEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc------------E
Confidence 467999999999999999999999999999999999999999999999876532 12445 4
Q ss_pred eeeccccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
|+||||+|+...+.+..++.+.+.. ..+++|+||||++|.||+++|+.|++++....
T Consensus 117 IivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 117 VICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPN 174 (247)
T ss_pred EEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcccc
Confidence 5999999998777788777777654 35789999999999999999999999764433
No 346
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.56 E-value=1.2e-07 Score=80.69 Aligned_cols=113 Identities=31% Similarity=0.432 Sum_probs=101.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------iv~NK~D 118 (164)
T cd04145 51 ILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI------------LVGNKAD 118 (164)
T ss_pred EEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE------------EEeeCcc
Confidence 4678999999999999999999999999999999999999999999988876555566765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..+++..+++..+++|+||||++|.||+++|+.+++..
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 119 LEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 988888888888889988899999999999999999999999753
No 347
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.55 E-value=1.2e-07 Score=80.77 Aligned_cols=69 Identities=39% Similarity=0.520 Sum_probs=61.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.+++.++++++|||++++.+|+++..|...+.+.....++|++ +||||+|
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------~v~nK~D 116 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV------------LVGNKCD 116 (164)
T ss_pred EEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999888876555456655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 117 l 117 (164)
T smart00173 117 L 117 (164)
T ss_pred c
Confidence 4
No 348
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.55 E-value=8.8e-08 Score=82.44 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=60.8
Q ss_pred ccceeeeccCCCCCc-hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~-~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+++|||+|++.|. .+.+.+++++|++++|||++++.+|+++..|.+.+.......++|++ +||||
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK 118 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI------------LVGNK 118 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 356799999999886 57888999999999999999999999999999999887665567766 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 119 ~D 120 (170)
T cd04115 119 CD 120 (170)
T ss_pred cc
Confidence 98
No 349
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.55 E-value=4.3e-07 Score=72.21 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEeccCCCcCHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~ 346 (373)
++|++||.++.||+++++-+..
T Consensus 122 ~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 122 PIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred ceEEEeccCcccHHHHHHHHHh
Confidence 6899999999999999998875
No 350
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.54 E-value=8.2e-08 Score=81.77 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=60.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC----CCCCchhhccccccceeeee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD----FQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~----~~~p~v~~~~~~~~~~~ilv 298 (373)
..+++|||+|++.|..+++.++++++++++|||++++.+|+.+..|..++.+.... .+.|++ +|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii------------lv 116 (168)
T cd04119 49 VRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV------------VC 116 (168)
T ss_pred EEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEE------------EE
Confidence 35779999999999999999999999999999999999999999999999887653 345554 99
Q ss_pred ccccc
Q psy16673 299 YSTTC 303 (373)
Q Consensus 299 gnK~D 303 (373)
+||+|
T Consensus 117 ~nK~D 121 (168)
T cd04119 117 ANKID 121 (168)
T ss_pred EEchh
Confidence 99999
No 351
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.54 E-value=1e-07 Score=85.38 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+...++++++++++|||++++.||+++..|..++.........|+ ++||||+|
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~i------------ilvgNK~D 120 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVF------------ILVGHKCD 120 (211)
T ss_pred EEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeE------------EEEEEccc
Confidence 477999999999999999999999999999999999999999999999887654434444 49999988
No 352
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.53 E-value=1.2e-07 Score=80.81 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=54.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++. ..+++.++++++|||++++.||+++..|++++........+|++ +||||.|
T Consensus 48 ~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pii------------lvgnK~D 110 (158)
T cd04103 48 LLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLI------------LVGTQDA 110 (158)
T ss_pred EEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEeeHHH
Confidence 467999999975 34678899999999999999999999999999887654556655 9999988
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 111 l 111 (158)
T cd04103 111 I 111 (158)
T ss_pred h
Confidence 5
No 353
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.53 E-value=1.1e-07 Score=80.75 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=60.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|++.|..+++..+++++++++|||++++.||+++..|++.+....+ ..+|++ +||||.|
T Consensus 49 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~ii------------vvg~K~D 115 (162)
T PF00071_consen 49 NLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPII------------VVGNKSD 115 (162)
T ss_dssp EEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEE------------EEEETTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccce------------eeecccc
Confidence 478999999999999999999999999999999999999999999999999877 335544 9999998
No 354
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.52 E-value=1.1e-07 Score=81.60 Aligned_cols=111 Identities=20% Similarity=0.253 Sum_probs=97.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+++||++|+++|..++..++++++++++|||++++.||+.+..|..++...... .++|++ +|||
T Consensus 55 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii------------lv~n 122 (170)
T cd04116 55 TLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV------------VLGN 122 (170)
T ss_pred EEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE------------EEEE
Confidence 4678999999999999999999999999999999999999999999888775432 345544 9999
Q ss_pred ccccccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 301 TTCLESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+|+. .+.++.++.+.+++..+ ++|+||||++|.|++++|+.+++.
T Consensus 123 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 123 KNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred Ccccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 99987 66777888888988887 589999999999999999999973
No 355
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.52 E-value=1.3e-07 Score=81.69 Aligned_cols=71 Identities=28% Similarity=0.450 Sum_probs=59.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+++|||+|+++|..+++.++++++++++|||++++.||+++. .|...+....+ ++|++ +||||+
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 114 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP--KAPII------------LVGTQA 114 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEeeCh
Confidence 4679999999999999999999999999999999999999986 48887775432 35554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 115 Dl~~~~ 120 (173)
T cd04130 115 DLRTDV 120 (173)
T ss_pred hhccCh
Confidence 986543
No 356
>KOG3886|consensus
Probab=98.51 E-value=1.5e-07 Score=82.71 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=54.2
Q ss_pred eeeeeeccccccchh-----HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFP-----AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~-----~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++||.+|++.+- .....-++..++.+.|||+...+-...+..+-..+.......+...+.+.-+|.|+..
T Consensus 53 l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 53 LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred heeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 349999999998653 2344557889999999999887655555555444554554558888999999999985
No 357
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.49 E-value=1.9e-07 Score=80.09 Aligned_cols=110 Identities=12% Similarity=0.184 Sum_probs=93.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+||++|+..|..+++.++++++++++|||++++.+|..+..|..++.... .++|++ +||||.
T Consensus 44 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~pii------------lv~NK~ 109 (164)
T cd04162 44 AIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLV------------VLANKQ 109 (164)
T ss_pred eEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEE------------EEEeCc
Confidence 457899999999999999999999999999999999999999998888776543 346655 999999
Q ss_pred ccccchhhhh----hHHHHHhhhcCCeEEEeccCC------CcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKC----YFEEIREQRQDFQLLECSAKD------NYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~----~~~~~~a~~~~~~~~E~SAkt------g~nv~elf~~i~~ 346 (373)
|+...+.+.. .....++...+++|+||||++ |+||+++|+.++.
T Consensus 110 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 110 DLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 9987776553 345667777889999999999 9999999999874
No 358
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.49 E-value=1.5e-07 Score=80.52 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|+++|..++..++++++++++|||++++.+|+.+..|.+.+...... .+|+ ++||||+
T Consensus 50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD-NAQV------------ILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCCE------------EEEEECc
Confidence 45789999999999999999999999999999999999999999999998765532 3454 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 117 Dl 118 (165)
T cd01865 117 DM 118 (165)
T ss_pred cc
Confidence 95
No 359
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.48 E-value=2.1e-07 Score=79.81 Aligned_cols=112 Identities=32% Similarity=0.387 Sum_probs=101.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|++.|..+++.+++.++++++|||++++.+|+.+..|.+.+.+.....++|++ ++|||.|
T Consensus 50 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------iv~nK~D 117 (168)
T cd04177 50 DLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV------------LVGNKAD 117 (168)
T ss_pred EEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999988876555566765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++.++ ++|++|||++|.||+++|+++++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 118 LEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred ccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888888888 899999999999999999999974
No 360
>KOG1707|consensus
Probab=98.48 E-value=1.4e-06 Score=86.01 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=80.7
Q ss_pred CCcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceee-eeeecceEEeeeeeEEeccCCccchhhhcccc
Q psy16673 3 PVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSR-DFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHL 81 (373)
Q Consensus 3 ~~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (373)
+..+++.-+++.++|+.|+|||.|++.|++..+...+..+....|.- .+...+...-
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~---------------------- 475 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKY---------------------- 475 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccce----------------------
Confidence 45577788999999999999999999999888877655555533332 2222221111
Q ss_pred cceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHH
Q psy16673 82 EDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRR 161 (373)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~ 161 (373)
+.+.|.+-. ....+..
T Consensus 476 ---------------------------------------------------------------LiL~ei~~~-~~~~l~~ 491 (625)
T KOG1707|consen 476 ---------------------------------------------------------------LILREIGED-DQDFLTS 491 (625)
T ss_pred ---------------------------------------------------------------EEEeecCcc-ccccccC
Confidence 233333221 1111111
Q ss_pred hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 162 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 162 ~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.- ..+|.+.++||.+++.+|+-+...++.-... ..+|+++|++|+|+..
T Consensus 492 ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~----~~~Pc~~va~K~dlDe 540 (625)
T KOG1707|consen 492 KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL----YKIPCLMVATKADLDE 540 (625)
T ss_pred cc-ceeeeEEEecccCCchHHHHHHHHHHHhhhc----cCCceEEEeeccccch
Confidence 11 5689999999999999999887654433222 6899999999999975
No 361
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.47 E-value=7e-06 Score=70.88 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.1
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh--hcCC
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDF 324 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~--~~~~ 324 (373)
.+..++|+|++..+.- +...-|.+ -++=++|.||.|+...-..+-+.-..-++ .-.+
T Consensus 118 d~~~v~VidvteGe~~--------------P~K~gP~i-------~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~ 176 (202)
T COG0378 118 DHLRVVVIDVTEGEDI--------------PRKGGPGI-------FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEA 176 (202)
T ss_pred hceEEEEEECCCCCCC--------------cccCCCce-------eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCC
Confidence 3467888899887532 11123554 22457999999997654443332222222 2358
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
||+++|++||+|++++++.+...
T Consensus 177 ~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 177 PIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CEEEEeCCCCcCHHHHHHHHHhh
Confidence 99999999999999999988764
No 362
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.47 E-value=1.8e-07 Score=81.63 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=84.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++++..+++.++++++++++|||++++.+|++...++..+.......++|+ ++|+||.
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pi------------ilv~NK~ 128 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVL------------LVFANKQ 128 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCE------------EEEEeCC
Confidence 4578999999999999999999999999999999999999998876666544322223454 4999999
Q ss_pred ccccchhhhhhHHHHH----hhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIR----EQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~----a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+...... .+....+ .....++++||||++|.||+++|+.|++.
T Consensus 129 Dl~~~~~~-~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 129 DLPNAMST-TEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CCCCCCCH-HHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 98543221 1122222 22233578899999999999999999874
No 363
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.46 E-value=2.5e-07 Score=81.80 Aligned_cols=114 Identities=37% Similarity=0.455 Sum_probs=96.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|+..|..+++.++..++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 48 ~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~NK~D 115 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV------------VVGNKAD 115 (198)
T ss_pred EEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988887665567766 9999999
Q ss_pred ccc-chhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LES-FQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~-~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.. .+.+..+....... .++++|++|||++|.||+++|+.+++.+.
T Consensus 116 l~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 116 SLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 865 46666555544443 55789999999999999999999998654
No 364
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.46 E-value=1.8e-07 Score=81.66 Aligned_cols=108 Identities=6% Similarity=0.045 Sum_probs=83.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+||++|+++|..+++.++++++++++|||++++.+++++..++..+.......++|++ +||||.
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii------------lv~NK~ 128 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL------------VFANKQ 128 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE------------EEEECC
Confidence 45789999999999999999999999999999999999999888766665443222245544 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--------CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--------FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--------~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+..... ...+++..+ +.+++|||++|+||+++|+.|++.
T Consensus 129 Dl~~~~~-----~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 129 DLPNAMN-----AAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCCCC-----HHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 9865432 122332222 346799999999999999999875
No 365
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.45 E-value=2.3e-07 Score=79.25 Aligned_cols=67 Identities=28% Similarity=0.393 Sum_probs=58.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|+++|..++..++++++++++|||++++.||.++..|+..+.+... .+.|++ +||||+|
T Consensus 52 ~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~-~~~~~i------------iv~nK~D 118 (166)
T cd01869 52 KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYAS-ENVNKL------------LVGNKCD 118 (166)
T ss_pred EEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEEChh
Confidence 467999999999999999999999999999999999999999999999877642 235554 9999988
No 366
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.45 E-value=2.5e-07 Score=81.29 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=60.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..++++++++++|||++++.+|+++..|++.+....+ ++|++ +|+||+|
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~pii------------lv~nK~D 116 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEE--HCKIY------------LCGTKSD 116 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCC--CCCEE------------EEEEccc
Confidence 367999999999999999999999999999999999999999999998876532 45655 9999999
Q ss_pred cccc
Q psy16673 304 LESF 307 (373)
Q Consensus 304 l~~~ 307 (373)
+...
T Consensus 117 l~~~ 120 (193)
T cd04118 117 LIEQ 120 (193)
T ss_pred cccc
Confidence 8543
No 367
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.45 E-value=6.5e-06 Score=74.38 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=38.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgnK~Dl~~ 215 (373)
+.++||+|.- ..+ ......+|.++++.|......... ..++..+.. ...|. ++|.||.|+.+
T Consensus 85 i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~-----~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 85 LTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNILQV-----HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred EEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH-----cCCCeEEEEEeccccCC
Confidence 7889999853 222 233577999999999875433222 122333332 24554 45999999864
No 368
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.44 E-value=2.4e-07 Score=79.44 Aligned_cols=68 Identities=25% Similarity=0.380 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++..|...+.+... .++|++ +||||+|
T Consensus 53 ~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i------------iv~nK~D 119 (167)
T cd01867 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHAS-EDVERM------------LVGNKCD 119 (167)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999999887643 345554 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 120 l 120 (167)
T cd01867 120 M 120 (167)
T ss_pred c
Confidence 4
No 369
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.44 E-value=1.3e-06 Score=78.91 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=57.0
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh-----
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ----- 320 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~----- 320 (373)
-+|.++++.-..-....+-++.-+=++.. |+|.||+|....+....+....+..
T Consensus 142 ~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------------------i~vVNKaD~~gA~~~~~~l~~~l~l~~~~~ 200 (266)
T PF03308_consen 142 MADTVVLVLVPGLGDEIQAIKAGIMEIAD---------------------IFVVNKADRPGADRTVRDLRSMLHLLRERE 200 (266)
T ss_dssp TSSEEEEEEESSTCCCCCTB-TTHHHH-S---------------------EEEEE--SHHHHHHHHHHHHHHHHHCSTSC
T ss_pred hcCeEEEEecCCCccHHHHHhhhhhhhcc---------------------EEEEeCCChHHHHHHHHHHHHHHhhccccc
Confidence 45677777777667777666653333322 4899999987766555554444442
Q ss_pred -hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 321 -RQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 321 -~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
.|.-|++.|||.+|.||+++++.|.+........
T Consensus 201 ~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~s 235 (266)
T PF03308_consen 201 DGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKES 235 (266)
T ss_dssp TSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 2346899999999999999999999865555444
No 370
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.44 E-value=5.1e-06 Score=78.44 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=37.1
Q ss_pred eeeeccccccccchhhhh---hHH---HHHhh---hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKC---YFE---EIREQ---RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~---~~~---~~~a~---~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
.++|.||+|+........ ... ..+.. .+..++++|||++|.|++++++.+.+...
T Consensus 175 ~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 175 DIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 359999999865432211 110 11111 23457999999999999999999998644
No 371
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.43 E-value=2.3e-07 Score=78.72 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+..... ++|++ +|+||.
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~--~~p~i------------iv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG--DIPMV------------LVQTKI 116 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 3578999999999999999999999999999999999999999999998876543 46655 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 117 Dl 118 (162)
T cd04106 117 DL 118 (162)
T ss_pred hc
Confidence 96
No 372
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.43 E-value=3e-07 Score=81.39 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.|..++..++++++++++|||++++.||+++..|++.+....+ .+|++ +||||+|
T Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~pii------------vVgNK~D 121 (199)
T cd04110 56 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD--DVCKV------------LVGNKND 121 (199)
T ss_pred EEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999998877553 34544 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 122 l 122 (199)
T cd04110 122 D 122 (199)
T ss_pred c
Confidence 5
No 373
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.42 E-value=2.8e-07 Score=81.05 Aligned_cols=68 Identities=29% Similarity=0.492 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+.+|..++..++++++++++|||++++.+|+++..|...+.+.... .+|++ +||||+|
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------iv~NK~D 117 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQE-DVVIM------------LLGNKAD 117 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCcEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988876432 45655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 118 l 118 (191)
T cd04112 118 M 118 (191)
T ss_pred c
Confidence 4
No 374
>PLN03110 Rab GTPase; Provisional
Probab=98.42 E-value=2.7e-07 Score=82.89 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..++..++++++++++|||++++.+|+++..|+..+....+ .++|++ +||||+|
T Consensus 62 ~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~pii------------iv~nK~D 128 (216)
T PLN03110 62 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHAD-SNIVIM------------MAGNKSD 128 (216)
T ss_pred EEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEEChh
Confidence 567999999999999999999999999999999999999999999998877654 345655 9999998
No 375
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.42 E-value=2.7e-07 Score=78.74 Aligned_cols=111 Identities=25% Similarity=0.392 Sum_probs=99.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+++|..+++.++.+++++++|||++++.+|+++..|+..+.+.... ++|+ ++||||+|
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~pi------------~vv~nK~D 119 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS-NIVI------------MLVGNKSD 119 (165)
T ss_pred EEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCeE------------EEEEECcc
Confidence 4679999999999999999999999999999999999999999999998876542 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++.+.++...+++|+||||++|.|++++|+.++..
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 120 LRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred ccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 98888888888889998889999999999999999999999874
No 376
>KOG1486|consensus
Probab=98.42 E-value=1.1e-05 Score=71.92 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=37.7
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
|+-|+||.|.. +.++..++|+.-+- +.+|..-+.|++.+++.+-+...+.
T Consensus 241 ClYvYnKID~v-----s~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~L~ 290 (364)
T KOG1486|consen 241 CLYVYNKIDQV-----SIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELNLV 290 (364)
T ss_pred EEEEeecccee-----cHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhceE
Confidence 56999999964 45566677776654 6678888899999999988765443
No 377
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.40 E-value=4.1e-07 Score=77.13 Aligned_cols=110 Identities=12% Similarity=0.107 Sum_probs=84.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeecccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
+.++||+|++.|..++..++++++++++|+|++++.+|.....|...+.+... ..++|++ +|+||+
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~NK~ 114 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL------------FFANKM 114 (162)
T ss_pred EEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE------------EEEeCc
Confidence 56899999999999999999999999999999999999998888877765432 2345655 999999
Q ss_pred ccccchh-hhhhHHHHHhh--hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQS-VKCYFEEIREQ--RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~-v~~~~~~~~a~--~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+... ........++. ...+++++|||++|.|++++|+.|.+
T Consensus 115 Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 115 DLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred cccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 9865432 11111222222 22456999999999999999999875
No 378
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.40 E-value=9.8e-07 Score=75.63 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=43.7
Q ss_pred eeeeccccccc----hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.++||||... ...+...++..+|++++|.+.+...+-.....|.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~-----~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD-----KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT-----CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC-----CCeEEEEEcCC
Confidence 99999999632 2367788889999999999998866555555555554433 33377887874
No 379
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.40 E-value=3.6e-07 Score=79.78 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=91.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|+++|..+++.++++++++++|||++++.+++.+..|..++.......+.|++ +|+||+
T Consensus 52 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i------------iv~NK~ 119 (183)
T cd04152 52 ITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL------------VLANKQ 119 (183)
T ss_pred eEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE------------EEEECc
Confidence 45789999999999999999999999999999999999999998888888776554556655 999999
Q ss_pred ccccchhhhhhHHHHHh------hhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 303 CLESFQSVKCYFEEIRE------QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a------~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|+..... .++.+.+. ...++++++|||++|.||+++|+.|++.+...+.
T Consensus 120 D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 120 DLPNALS--VSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred CccccCC--HHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 9864322 22222222 1124678999999999999999999987644433
No 380
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.39 E-value=3.8e-07 Score=78.30 Aligned_cols=68 Identities=28% Similarity=0.421 Sum_probs=59.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.||+++..|..++.+... .++|++ +||||.|
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pvi------------vv~nK~D 120 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTIM------------LIGNKCD 120 (168)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 577999999999999999999999999999999999999999999999887643 245655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T cd01866 121 L 121 (168)
T ss_pred c
Confidence 4
No 381
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.39 E-value=4.4e-07 Score=78.04 Aligned_cols=109 Identities=7% Similarity=0.083 Sum_probs=88.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|+..+..++..++++++++++|||++++.+|+++..|...+.+.....+.|++ +|+||+|+
T Consensus 45 i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~Dl 112 (169)
T cd04158 45 FTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL------------IFANKQDV 112 (169)
T ss_pred EEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE------------EEEeCcCc
Confidence 458999999999999999999999999999999999999999988888765433335544 99999999
Q ss_pred ccchhhhhhHHHHHhhhc------CCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQRQ------DFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~------~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
... ++.++.+.++... .++|+||||++|.||+++|+.+++.
T Consensus 113 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~ 159 (169)
T cd04158 113 AGA--LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQ 159 (169)
T ss_pred ccC--CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence 643 4555555554322 2378999999999999999999874
No 382
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.39 E-value=3.4e-07 Score=77.94 Aligned_cols=112 Identities=19% Similarity=0.265 Sum_probs=99.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.+..+.+..+..++++++|||++++.+|+++..|++.+.... .++|++ +||||+
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i------------lv~nK~ 117 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGV------------LVGNKM 117 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEE------------EEEECc
Confidence 346799999999999999999999999999999999999999999999888764 235655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.+....++.++...+++|++|||++|.||+++|+.+++..
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 118 DLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 9988888888888888888899999999999999999999999853
No 383
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.38 E-value=5.8e-07 Score=77.36 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=59.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|+..|..+++.++++++++++|||++++.+|+++.. |...+... ..+.|++ +||||+|
T Consensus 50 ~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~pii------------vv~nK~D 115 (174)
T cd04135 50 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYL------------LVGTQID 115 (174)
T ss_pred EEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEE------------EEeEchh
Confidence 5689999999999999999999999999999999999999975 77777654 2345655 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+.+..
T Consensus 116 l~~~~ 120 (174)
T cd04135 116 LRDDP 120 (174)
T ss_pred hhcCh
Confidence 86543
No 384
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.38 E-value=4.2e-07 Score=79.55 Aligned_cols=68 Identities=28% Similarity=0.427 Sum_probs=59.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..++...+++++++++|||++++.+|+++..|+.++....+. ..| +++||||+
T Consensus 49 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~-~~~------------~ivv~nK~ 115 (188)
T cd04125 49 IKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARE-NVI------------KVIVANKS 115 (188)
T ss_pred EEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCe------------EEEEEECC
Confidence 34679999999999999999999999999999999999999999999998876543 244 45999998
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 116 D 116 (188)
T cd04125 116 D 116 (188)
T ss_pred C
Confidence 8
No 385
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.38 E-value=5.7e-07 Score=76.79 Aligned_cols=68 Identities=35% Similarity=0.421 Sum_probs=57.0
Q ss_pred cceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+++|||+|+.+ +......+++.++++++|||++++.||+++..|...+..... ..++|++ +||||
T Consensus 48 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii------------lv~nK 115 (165)
T cd04146 48 SLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVI------------LVGNK 115 (165)
T ss_pred EEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 467999999986 345567789999999999999999999999999998887654 4456655 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (165)
T cd04146 116 AD 117 (165)
T ss_pred Cc
Confidence 99
No 386
>KOG1532|consensus
Probab=98.38 E-value=7.9e-06 Score=73.82 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++..+-|||.||.|.+++|..+-+.+...
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 56789999999999999999988766544
No 387
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=3.8e-07 Score=77.91 Aligned_cols=111 Identities=24% Similarity=0.311 Sum_probs=98.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++...++.++++++|||++++.||+.+..|...+..... .++|++ +|+||+|
T Consensus 53 ~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~i------------vv~nK~D 119 (165)
T cd01864 53 KLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGA-SNVVLL------------LIGNKCD 119 (165)
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999999877542 345655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..+++..++ .++||||++|.|++++|+.+++.
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 120 LEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 988888888888899988876 69999999999999999999873
No 388
>KOG1490|consensus
Probab=98.37 E-value=1.8e-06 Score=83.79 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee--cceeeeeeecceEEe
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE--DLYSRDFHVGAVTIK 59 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~--d~~~~~~~~~~~~~~ 59 (373)
+++.-.++|+|-||||||||+|..+... .-+. .|+|+.+-++...++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad------vevqpYaFTTksL~vGH~dyk 213 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD------DEVQPYAFTTKLLLVGHLDYK 213 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc------cccCCcccccchhhhhhhhhh
Confidence 5566789999999999999888777331 2222 335555555555444
No 389
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.37 E-value=8e-06 Score=81.04 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.0
Q ss_pred eeeecccccccc----chh-------hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLES----FQS-------VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~----~r~-------v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|.+|+|... ... .-...-+.++..+|+.+|.||++...|++.+++.|...+
T Consensus 199 i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 199 IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 349999999632 111 222335677788999999999999999999998877643
No 390
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.36 E-value=1.8e-06 Score=82.85 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=53.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+||.+|+...+..|..++.+++++++|.|+++- ..++.....++.+.+.. ...+.|+++++||.|+.
T Consensus 186 ~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK~D~~ 264 (342)
T smart00275 186 FRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEecHHhH
Confidence 89999999999999999999999999999999863 22333333344443321 23679999999999998
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 265 ~ 265 (342)
T smart00275 265 E 265 (342)
T ss_pred H
Confidence 5
No 391
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.35 E-value=1.8e-06 Score=92.23 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..++++||+|+.+|.......++.+|++++|.|....-......-|.. +.. ..+|++++.||.|+.
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~-~~~-----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQ-ALG-----ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHH-HHH-----CCCCEEEEEECCccc
Confidence 448999999999999888888899999999999887544333333433 322 468999999999997
No 392
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.35 E-value=1.4e-06 Score=73.92 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=61.4
Q ss_pred hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHH
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEI 317 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~ 317 (373)
.+.....+++|.+++|+|++++....+. .+...+. ..+.| +++|.||+|+....... ... .
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p------------~iiv~NK~Dl~~~~~~~-~~~-~ 64 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKK------------LLIVLNKADLVPKEVLE-KWK-S 64 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCc------------EEEEEEhHHhCCHHHHH-HHH-H
Confidence 4555667789999999999886654432 2222221 11244 45999999985432221 111 2
Q ss_pred HhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 318 REQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 318 ~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+....+.+++.+||++|.|++++++.+.+.+
T Consensus 65 ~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 65 IKESEGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred HHHhCCCcEEEEEccccccHHHHHHHHHHHH
Confidence 3344678899999999999999999998754
No 393
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.35 E-value=6.8e-07 Score=75.81 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=98.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||.|++.|..+....+++++++++|||++++.+|+.+..|...+.+......+|++ +||||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~------------iv~nK~D 117 (161)
T cd01863 50 KLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKM------------LVGNKID 117 (161)
T ss_pred EEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEE------------EEEECCc
Confidence 4679999999999988888999999999999999999999999999999888776667765 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+. .+.+..++...++...+++|++|||++|.|++++|+.+++.
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 118 KE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 97 34455667788888889999999999999999999999873
No 394
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.34 E-value=1.9e-06 Score=82.62 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++.+++|+|+|.+|+|||||+|.+.+
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrG 57 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRG 57 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999999999963
No 395
>PLN03118 Rab family protein; Provisional
Probab=98.34 E-value=7.3e-07 Score=79.68 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=57.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.+|+++.. |...+.........|+ ++||||+
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~------------ilv~NK~ 130 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK------------MLVGNKV 130 (211)
T ss_pred EEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEECc
Confidence 46799999999999999999999999999999999999999987 6666655544434554 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 131 D 131 (211)
T PLN03118 131 D 131 (211)
T ss_pred c
Confidence 8
No 396
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.34 E-value=5.6e-07 Score=76.42 Aligned_cols=67 Identities=25% Similarity=0.348 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++||++|++.|..++...+++++++++|||++++.+|+++..|+.++..... .++|++ +|+||+|
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~ii------------vv~nK~D 116 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALAS-PNIVVI------------LVGNKSD 116 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEEchh
Confidence 467999999999999999999999999999999999999999999988876543 245544 9999998
No 397
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.34 E-value=6.1e-07 Score=77.40 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=85.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..++..++++++++++|||++++.+|++...|...+.......++|++ +|+||+|
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~D 126 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL------------ILANKQD 126 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECcc
Confidence 3569999999999989999999999999999999999999998888777654333345655 9999999
Q ss_pred cccchhhhhhHHHHHh-----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIRE-----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a-----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+..... .++.+.+. ...+++|+||||++|.|++++|+.++.
T Consensus 127 l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 127 LPGALS--EEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cccCCC--HHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 965432 22222222 234679999999999999999999864
No 398
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.33 E-value=3.4e-06 Score=75.55 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
++|+++|..|+||||++|.+++...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~ 25 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEV 25 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999995543
No 399
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.32 E-value=7.9e-07 Score=76.88 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.++|++|+..|...+..++++++++++|||++++.+|.....+...+.+......+|++ +++||
T Consensus 58 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~v------------iv~NK 125 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLL------------VLANK 125 (174)
T ss_pred CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEE------------EEEEC
Confidence 456789999999999999999999999999999999999998888877666554433345655 99999
Q ss_pred cccccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+..... ..+..+.+. ...++++++|||++|.||+++|+.|++
T Consensus 126 ~Dl~~~~~-~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 126 QDLKGAMT-PAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CCCCCCCC-HHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 99865321 112233332 345678999999999999999999875
No 400
>KOG3905|consensus
Probab=98.32 E-value=1.8e-05 Score=73.07 Aligned_cols=51 Identities=18% Similarity=0.096 Sum_probs=39.8
Q ss_pred eeecccccc----ccchh-------hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 296 LLVYSTTCL----ESFQS-------VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 296 ilvgnK~Dl----~~~r~-------v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
++|..|||. +.... .-....+.++.++|...|.+|+|...||+-+..-|+.
T Consensus 226 lVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh 287 (473)
T KOG3905|consen 226 LVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH 287 (473)
T ss_pred EEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence 399999997 22221 1233456778889999999999999999999999986
No 401
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.30 E-value=9e-07 Score=74.97 Aligned_cols=110 Identities=14% Similarity=0.224 Sum_probs=85.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||++|+..+..++..++..++++++|||++++.++..+..|..++.+.....+.|++ +|+||+|+
T Consensus 46 l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 113 (160)
T cd04156 46 LTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV------------LLANKQDL 113 (160)
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE------------EEEECccc
Confidence 568999999999988888999999999999999999999998888777654433356655 99999998
Q ss_pred ccc---hhhhhhH-HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 305 ESF---QSVKCYF-EEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~---r~v~~~~-~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
... +.+.... .+.++...++++++|||++|.||+++|+.|++
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 114 PGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 542 2222111 12233345678999999999999999999875
No 402
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.30 E-value=1.5e-06 Score=76.39 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=61.3
Q ss_pred CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHH
Q psy16673 236 FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 315 (373)
Q Consensus 236 ~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~ 315 (373)
|..+...++..++++++|+|+++.... |...+.... .+.| +++|+||+|+...... .+..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~--~~~~------------~ilV~NK~Dl~~~~~~-~~~~ 83 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG--GNNP------------VILVGNKIDLLPKDKN-LVRI 83 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc--CCCc------------EEEEEEchhcCCCCCC-HHHH
Confidence 466778889999999999999986421 222221111 1234 4599999998643322 1222
Q ss_pred HHHh-----hhcCC---eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 316 EIRE-----QRQDF---QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 316 ~~~a-----~~~~~---~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+. ...+. ++|++||++|.|++++++.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 84 KNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred HHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 2222 22333 689999999999999999998854
No 403
>PTZ00416 elongation factor 2; Provisional
Probab=98.29 E-value=3.4e-06 Score=90.05 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=50.3
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
..+.+.||+|+.+|.......++.+|++++|.|....-......-| ..+.+ ..+|++++.||+|+.
T Consensus 92 ~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred eEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH-----cCCCEEEEEEChhhh
Confidence 3489999999999988888888999999999998775333332223 33332 358999999999997
No 404
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.29 E-value=1.5e-06 Score=91.64 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=49.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+.++||+|+.+|.......++.+|++++|.|....-.......|.. +.+ ...|.+++.||.|+..
T Consensus 87 ~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~-----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 87 YLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR-----ERVKPVLFINKVDRLI 153 (731)
T ss_pred EEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH-----cCCCeEEEEECchhhc
Confidence 348999999999998888888999999999999876533333233332 222 2457789999999863
No 405
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.29 E-value=1e-06 Score=74.77 Aligned_cols=109 Identities=12% Similarity=0.110 Sum_probs=81.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|+..|..+++.++..++++++|+|++++.++.....++..+.+.....++|++ +|+||+|+
T Consensus 45 ~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------iv~nK~Dl 112 (158)
T cd04151 45 FQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL------------VFANKQDM 112 (158)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE------------EEEeCCCC
Confidence 568999999999999999999999999999999998888777755544433222345655 99999998
Q ss_pred ccchhhhhhHHHHHh----hhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIRE----QRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a----~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
...... .+..+.+. ...+++++||||++|.||+++|+.+++
T Consensus 113 ~~~~~~-~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 113 PGALSE-AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCH-HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 654321 11112221 223468999999999999999999975
No 406
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.28 E-value=1.6e-06 Score=73.36 Aligned_cols=111 Identities=11% Similarity=0.142 Sum_probs=87.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+..+..+....+.+++++++|||++++.++.....+...+.......+.|++ +|+||+|
T Consensus 44 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii------------iv~nK~D 111 (158)
T cd00878 44 SFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL------------IFANKQD 111 (158)
T ss_pred EEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE------------EEeeccC
Confidence 3569999999999999999999999999999999999999998888877765544455655 9999999
Q ss_pred cccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...+ .+....+........+++++|||++|.|++++|+.|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 112 LPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 87654 22222222212345679999999999999999999875
No 407
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.28 E-value=1.4e-05 Score=74.16 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=37.0
Q ss_pred eeeeccccccccch--hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r--~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
-++|.||.|+.... .+..-.........+++++++||++|+|+++++++|.+
T Consensus 233 DIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 233 SLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45999999997532 23222222222234688999999999999999999976
No 408
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.28 E-value=1.2e-06 Score=74.93 Aligned_cols=111 Identities=24% Similarity=0.177 Sum_probs=87.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|.+.+......+++.++++++|||++++.+|+++. .|.+.+...++ ++|++ +|+||+
T Consensus 48 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~--~~pvi------------iv~nK~ 113 (166)
T cd01893 48 PTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV--KVPII------------LVGNKS 113 (166)
T ss_pred EEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEch
Confidence 4679999999988877777889999999999999999999986 48887776554 56655 999999
Q ss_pred ccccchhh--hhhHHHHHhhhc-C-CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSV--KCYFEEIREQRQ-D-FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v--~~~~~~~~a~~~-~-~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.. ..+....++..+ + .+|+||||++|.|++++|+.+.+.+
T Consensus 114 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 114 DLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 99776543 123333333333 2 4899999999999999999999854
No 409
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.27 E-value=3.2e-05 Score=71.08 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=58.1
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh-----
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ----- 320 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~----- 320 (373)
.+|.++++--..-....|-++.-.=++.. |+|.||.|.........+....+..
T Consensus 164 ~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------------------i~vINKaD~~~A~~a~r~l~~al~~~~~~~ 222 (323)
T COG1703 164 MADTFLVVMIPGAGDDLQGIKAGIMEIAD---------------------IIVINKADRKGAEKAARELRSALDLLREVW 222 (323)
T ss_pred hcceEEEEecCCCCcHHHHHHhhhhhhhh---------------------eeeEeccChhhHHHHHHHHHHHHHhhcccc
Confidence 45666666555556666666553333322 3899999976654443333333332
Q ss_pred ---hcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccCC
Q psy16673 321 ---RQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355 (373)
Q Consensus 321 ---~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~~ 355 (373)
-|.-|.+.|||.+|+|++++++.+.+-.+-....+
T Consensus 223 ~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg 260 (323)
T COG1703 223 RENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG 260 (323)
T ss_pred cccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence 23468999999999999999999998665555544
No 410
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.27 E-value=5.9e-06 Score=83.66 Aligned_cols=71 Identities=11% Similarity=-0.001 Sum_probs=43.7
Q ss_pred eeeeccccccchh-------Hh---HHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFP-------AM---RRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~-------~~---~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.++||+|..... .+ ...++. +.|++++|..+........-..++..+.+..+..---.++||.|+.|
T Consensus 168 L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 168 IRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred EEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 8899999965421 11 111333 47999999887643332222356666666665444455789999988
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
...
T Consensus 248 ~lp 250 (763)
T TIGR00993 248 SAP 250 (763)
T ss_pred cCC
Confidence 874
No 411
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=8e-06 Score=75.33 Aligned_cols=64 Identities=23% Similarity=0.200 Sum_probs=42.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++.+.|.+|++-.-+..-+...--|+.++|.+.+.+ .+-|++..+ ++. .--.++|+-||.||.+
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al--eIi------gik~iiIvQNKIDlV~ 154 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL--EII------GIKNIIIVQNKIDLVS 154 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH--hhh------ccceEEEEecccceec
Confidence 388999999976554443334445999999998763 455554321 111 2345789999999986
No 412
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.27 E-value=1e-06 Score=74.60 Aligned_cols=111 Identities=24% Similarity=0.366 Sum_probs=98.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..+..+....++.++++++|||++++.+|+++..|.+.+....+. ++|++ +++||.|
T Consensus 50 ~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~ii------------lv~nK~D 116 (161)
T cd01861 50 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN-DVIIV------------LVGNKTD 116 (161)
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCEEE------------EEEEChh
Confidence 4679999999999999999999999999999999999999999999988765442 45655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++...+++..+++++++||++|.|++++|+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 117 LSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 97778888888889998889999999999999999999999873
No 413
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.26 E-value=1.8e-06 Score=75.44 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=84.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..+..++..++.+++++++|+|++++.++.....+..++.+.....++|++ +|+||.
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pil------------iv~NK~ 128 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFL------------ILGNKI 128 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEE------------EEEeCc
Confidence 45678999999999999999999999999999999999998888877776654333455655 999999
Q ss_pred ccccchhhhhhHHHHHh--h---------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIRE--Q---------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a--~---------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+..... ..+..+.+. + .....+++|||++|.|++++|+.|..
T Consensus 129 Dl~~~~~-~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 129 DAPYAAS-EDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccCCCC-HHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 9854221 111222221 1 12346999999999999999999976
No 414
>PRK00098 GTPase RsgA; Reviewed
Probab=98.26 E-value=2.8e-06 Score=80.12 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=61.2
Q ss_pred cccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 244 IATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
..++|.+++|+|++++.++... ..|...+.. .++|++ +|+||+|+........+ .....+..
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~i------------IVlNK~DL~~~~~~~~~-~~~~~~~~ 140 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPI------------IVLNKIDLLDDLEEARE-LLALYRAI 140 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEEhHHcCCCHHHHHH-HHHHHHHC
Confidence 4788999999999988776554 556655443 245544 99999999644332222 22333556
Q ss_pred CCeEEEeccCCCcCHHHHHHHHH
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+++++++||++|.|++++++.+.
T Consensus 141 g~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 141 GYDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred CCeEEEEeCCCCccHHHHHhhcc
Confidence 88999999999999999998764
No 415
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.25 E-value=1.6e-06 Score=76.84 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=93.7
Q ss_pred cceeeeccCCCCCch--------hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccc
Q psy16673 224 DVDILDTCGDLQFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAH 293 (373)
Q Consensus 224 ~~~~~dtag~~~~~~--------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~ 293 (373)
.+.+|||+|...|.. .+..+++.+|++++|||++++.||+.+..|++.+.+... ..++|++
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii--------- 120 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV--------- 120 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE---------
Confidence 356899999765532 234467899999999999999999999999998887652 3456665
Q ss_pred eeeeeccccccccchhhhhhHHHHHh-hhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIRE-QRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a-~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+||||+|+...+.+..++.+.++ +.++++|+||||++|.||+++|+.+++.+.
T Consensus 121 ---ivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 121 ---VVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred ---EEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 99999999887888877777765 467899999999999999999999998543
No 416
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.24 E-value=1.4e-06 Score=74.31 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=85.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..|..++...+.+++++++|+|++++.+++....|...+.+.....++|++ +++||+|
T Consensus 51 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~NK~D 118 (167)
T cd04160 51 RLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL------------ILANKQD 118 (167)
T ss_pred EEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEEccc
Confidence 4568999999999999999999999999999999999999988888877765444456655 9999999
Q ss_pred cccchhhhhhHHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...... .+..+.+.. ..++++++|||++|.|++++|+.|++
T Consensus 119 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 119 LPDALSV-EEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred cccCCCH-HHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 8553221 111222211 13578999999999999999999875
No 417
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.24 E-value=6.3e-07 Score=91.53 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=68.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..++..+|++++|||+++..+.+....+. .+.. .++|+ ++++||+|+
T Consensus 71 l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-~l~~----~~vpi------------IVv~NK~Dl 133 (590)
T TIGR00491 71 LLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YKTPF------------VVAANKIDR 133 (590)
T ss_pred EEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-HHHH----cCCCE------------EEEEECCCc
Confidence 669999999999999999999999999999999854433332211 1111 23554 499999998
Q ss_pred ccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
.. .++...+++|+|+||+.+.++..-|+
T Consensus 134 ~~----------~~~~~~~~~f~e~sak~~~~v~~~~~ 161 (590)
T TIGR00491 134 IP----------GWRSHEGRPFMESFSKQEIQVQQNLD 161 (590)
T ss_pred cc----------hhhhccCchHHHHHHhhhHHHHHHHH
Confidence 64 34566789999999999987765443
No 418
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.23 E-value=1.6e-06 Score=74.71 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=58.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++.+++++++|||++++.+|+++.. |...+....+ +.|++ +|+||+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 115 (175)
T cd01870 50 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP--NVPII------------LVGNKK 115 (175)
T ss_pred EEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEeeCh
Confidence 46799999999999998889999999999999999999999965 8777765432 45655 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 116 Dl~~~ 120 (175)
T cd01870 116 DLRND 120 (175)
T ss_pred hcccC
Confidence 98643
No 419
>KOG0096|consensus
Probab=98.23 E-value=1e-06 Score=75.05 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=95.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.-.+..|||+|++.+..++.-+|-++.+++++||++.+.++.++..|++.+.+.|.. +|++ ++|||
T Consensus 58 ~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N--iPiv------------~cGNK 123 (216)
T KOG0096|consen 58 QIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN--IPIV------------LCGNK 123 (216)
T ss_pred cEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC--CCee------------eeccc
Confidence 455779999999999999999999999999999999999999999999999998885 7766 99999
Q ss_pred cccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 302 TCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.|..... .....-.+.+..++.|+|.||+++.|.+.-|..+++.
T Consensus 124 vDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK 167 (216)
T KOG0096|consen 124 VDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK 167 (216)
T ss_pred eeccccc--cccccceeeecccceeEEeecccccccccchHHHhhh
Confidence 9986654 1222334557778999999999999999999999984
No 420
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.23 E-value=8.8e-07 Score=71.25 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=52.9
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++|+.|++.+.......+..++++++|||++++.||+.+..+...+..... ..++|++ +||||.|
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pii------------lv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPII------------LVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEE------------EEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEE------------EEEeccC
Confidence 56889999988877666669999999999999999999998777666655543 2346765 9999998
No 421
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=74.83 Aligned_cols=66 Identities=23% Similarity=0.142 Sum_probs=43.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+-||||++.|-.-.....+.||..|++.|.-.. -++.-+ -...+.... .--.++++-||+||.+
T Consensus 88 FIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLL---GIrhvvvAVNKmDLvd 153 (431)
T COG2895 88 FIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLL---GIRHVVVAVNKMDLVD 153 (431)
T ss_pred EEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHh---CCcEEEEEEeeecccc
Confidence 88999999999976666667889999999998331 111111 112222222 2234677889999986
No 422
>PRK12289 GTPase RsgA; Reviewed
Probab=98.22 E-value=3.7e-06 Score=80.68 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred hhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHH
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 316 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~ 316 (373)
.+...++.++|.+++|+|++++. ++..+..|...... .++|+ ++|+||+||...... ..+.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~------------ILVlNK~DLv~~~~~-~~~~~ 143 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEI------------VLCLNKADLVSPTEQ-QQWQD 143 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCE------------EEEEEchhcCChHHH-HHHHH
Confidence 44455688999999999999865 44556666654422 23454 499999999654332 22222
Q ss_pred HHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 317 IREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 317 ~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.+ ..+|++++++||++|.|++++++.+..
T Consensus 144 ~~-~~~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 144 RL-QQWGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred HH-HhcCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 22 467889999999999999999998864
No 423
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.22 E-value=4.4e-06 Score=78.35 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=65.0
Q ss_pred ccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 243 SIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
.+.++|.+++|+|++++. ++..+..|...+... ++|+ ++|+||+|+...... .........
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~ip~------------iIVlNK~DL~~~~~~--~~~~~~~~~ 136 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----GIEP------------VIVLTKADLLDDEEE--ELELVEALA 136 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----CCCE------------EEEEEHHHCCChHHH--HHHHHHHHh
Confidence 478899999999999998 888888887665532 3454 499999999654221 122333345
Q ss_pred cCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 322 QDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 322 ~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
.+.+++++||++|.|+++++..+..
T Consensus 137 ~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CCCeEEEEECCCCccHHHHHhhhcc
Confidence 7899999999999999999987763
No 424
>KOG0468|consensus
Probab=98.22 E-value=6.1e-06 Score=82.38 Aligned_cols=67 Identities=25% Similarity=0.302 Sum_probs=52.9
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+++.||+|+-+|.......++.+|++++++|+...-.+..=+...+.+. .+.|+++|.||.|..-
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq------~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ------NRLPIVVVINKVDRLI 263 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh------ccCcEEEEEehhHHHH
Confidence 349999999999999999999999999999999988766654222222222 5799999999999763
No 425
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.21 E-value=1.6e-06 Score=73.24 Aligned_cols=111 Identities=27% Similarity=0.342 Sum_probs=99.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|++.+..+++.++..++++++|||++++.+++.+..|.+++...... ++|++ +|+||+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------iv~nK~D 116 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN-NISLV------------IVGNKID 116 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCeEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999988876554 56655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++.+.+++..++++++|||++|.|++++|+.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 117 LERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred cccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 98888877778888888899999999999999999999999875
No 426
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.20 E-value=1.4e-06 Score=74.94 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|++.+..+++.++.++|++++|||++++.+|+.+..|++.+... .++|++ +|+||+|
T Consensus 55 ~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~---~~~p~i------------iv~NK~D 119 (169)
T cd01892 55 YLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML---GEIPCL------------FVAAKAD 119 (169)
T ss_pred EEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC---CCCeEE------------EEEEccc
Confidence 4568999999999999999999999999999999999999998888765321 245655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCe-EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQ-LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~-~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+.+.+...+.+.+++.++++ +++|||++|.|++++|+.+++.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 120 LDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 9777766666677788888874 79999999999999999999865
No 427
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.20 E-value=5.4e-05 Score=68.80 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
...+|+++|+.|+||||+++.+++..|
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 345799999999999999999996553
No 428
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.20 E-value=2.2e-06 Score=77.25 Aligned_cols=67 Identities=22% Similarity=0.229 Sum_probs=55.2
Q ss_pred ccceeeeccCCCCCchhhhhccc-cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIA-TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~-~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++ ..++..++. +++++++|||++++.||+++..|..++.......++|++ +|+||
T Consensus 50 ~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pii------------lV~NK 115 (221)
T cd04148 50 STLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPII------------LVGNK 115 (221)
T ss_pred EEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEC
Confidence 346799999998 334555666 999999999999999999999999988876554566655 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 116 ~D 117 (221)
T cd04148 116 SD 117 (221)
T ss_pred hh
Confidence 99
No 429
>KOG1144|consensus
Probab=98.20 E-value=9.1e-06 Score=82.07 Aligned_cols=62 Identities=24% Similarity=0.329 Sum_probs=50.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.++||+|++.|..++......||.+|+|.|+.. +.+.+++.. ++. +..|++|+.||+|..-
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~-----rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRM-----RKTPFIVALNKIDRLY 606 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHh-----cCCCeEEeehhhhhhc
Confidence 6778999999999999999999999999999865 445555432 222 6899999999999763
No 430
>PLN03108 Rab family protein; Provisional
Probab=98.20 E-value=1.8e-06 Score=77.09 Aligned_cols=67 Identities=27% Similarity=0.406 Sum_probs=58.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|...+..... ..+|++ +|+||+|
T Consensus 56 ~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~-~~~pii------------iv~nK~D 122 (210)
T PLN03108 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTIM------------LIGNKCD 122 (210)
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC-CCCcEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999988766543 245555 9999998
No 431
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.18 E-value=2e-06 Score=73.04 Aligned_cols=111 Identities=24% Similarity=0.316 Sum_probs=99.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||++|+++|..++..++++++++++|||++++.+|+....|+..+..... ..+|++ +++||.|
T Consensus 51 ~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~ii------------vv~nK~D 117 (163)
T cd01860 51 KFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS-PNIIIA------------LVGNKAD 117 (163)
T ss_pred EEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECcc
Confidence 467999999999999999999999999999999999999999999998887654 345655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++...+....+++++||||++|.|++++|+.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 118 LESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred ccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 98777778888888888889999999999999999999999984
No 432
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.18 E-value=2.3e-06 Score=74.87 Aligned_cols=69 Identities=26% Similarity=0.473 Sum_probs=58.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++..+++++++||++++.+|+++.. |.+.+....+ .+|++ +||||+
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lvgnK~ 115 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP--NVPVI------------LVGLKK 115 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEeeCh
Confidence 46799999999998888888999999999999999999999975 8888876544 36655 999999
Q ss_pred cccc
Q psy16673 303 CLES 306 (373)
Q Consensus 303 Dl~~ 306 (373)
|+..
T Consensus 116 Dl~~ 119 (187)
T cd04129 116 DLRQ 119 (187)
T ss_pred hhhh
Confidence 9854
No 433
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.17 E-value=2.6e-06 Score=72.80 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=92.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+++||+.|++.|..+++.+++.++++++|||++++.+|..... |...+..... ++|++ +||||+
T Consensus 49 ~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------vv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP--NVPII------------LVGTKI 114 (171)
T ss_pred EEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC--CCCEE------------EEEccH
Confidence 46799999999998888999999999999999999999988766 7777666543 56665 999999
Q ss_pred ccccch-----------hhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQ-----------SVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r-----------~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+...+ .+..+++..++...++ +|+|+||++|.|++++|+.+++
T Consensus 115 Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 115 DLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 986554 3456778888888887 9999999999999999999986
No 434
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.17 E-value=2.4e-06 Score=76.52 Aligned_cols=114 Identities=28% Similarity=0.313 Sum_probs=87.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
-.+.+|||+|++.|..+++.++.+++++++|||.++..+ ++....|..++...++ ...| +++|+||
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~------------iilv~nK 120 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAP-DDVP------------ILLVGNK 120 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC-CCce------------EEEEecc
Confidence 346799999999999999999999999999999999555 5556669989888775 2345 4599999
Q ss_pred cccccch------------hhhhhHHHHHhhhc---CCeEEEeccC--CCcCHHHHHHHHHHHhh
Q psy16673 302 TCLESFQ------------SVKCYFEEIREQRQ---DFQLLECSAK--DNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r------------~v~~~~~~~~a~~~---~~~~~E~SAk--tg~nv~elf~~i~~~~~ 349 (373)
+|+...+ .+........+... ...+++|||+ ++.||+++|..+++...
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred cccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 9997764 33333333332222 2349999999 99999999999998763
No 435
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.17 E-value=3.1e-06 Score=71.72 Aligned_cols=113 Identities=27% Similarity=0.355 Sum_probs=100.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..+..++...++.+++++++||++++.+|+++..|...+.+.....++|++ +|+||+|
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------iv~NK~D 116 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL------------LVGNKCD 116 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEccc
Confidence 4679999999999999999999999999999999999999999999988887665567766 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+...+...+++.++++|+++||++|.|++++|+.+++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 117 LEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred cccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 977666677777788888899999999999999999999998754
No 436
>KOG3883|consensus
Probab=98.17 E-value=2.9e-06 Score=69.78 Aligned_cols=86 Identities=24% Similarity=0.224 Sum_probs=68.5
Q ss_pred ccccceeeeccCCCCC-chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 221 HLEDVDILDTCGDLQF-PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~-~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
..+.+.+.||+|...+ ..+...+.+-+|+|++|||..+++||+.+..+..+|.++.....+|++ +.|
T Consensus 58 arE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiV------------VLa 125 (198)
T KOG3883|consen 58 AREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIV------------VLA 125 (198)
T ss_pred hhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEE------------EEe
Confidence 4566889999998877 678888999999999999999999999999999999999988889987 666
Q ss_pred cccccccchhhhhhHHHHHhhhc
Q psy16673 300 STTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
||+ ++.-..+-....|+.|
T Consensus 126 N~r----dr~~p~~vd~d~A~~W 144 (198)
T KOG3883|consen 126 NKR----DRAEPREVDMDVAQIW 144 (198)
T ss_pred chh----hcccchhcCHHHHHHH
Confidence 653 3333334444555554
No 437
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.14 E-value=2.6e-06 Score=72.20 Aligned_cols=112 Identities=29% Similarity=0.364 Sum_probs=99.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+||+.|+..|..++...++.++++++|||++++.+++.+..|+..+...... .+|++ +|+||+|
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~-~~piv------------vv~nK~D 116 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP-NVVIM------------LVGNKSD 116 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC-CCeEE------------EEEEchh
Confidence 4679999999999999999999999999999999999999999999988877542 45655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..+.++.++...+++|+|+||++|.|++++|+.+++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 117 LEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred cccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 988777777888888888899999999999999999999999854
No 438
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.12 E-value=4.4e-06 Score=80.82 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhh---
Q psy16673 234 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--- 310 (373)
Q Consensus 234 ~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v--- 310 (373)
+.|..+.+.++..++.+++|+|+++.. ..|.+++.+... +.| +++|+||+|+.....-
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~--~~p------------iilV~NK~DLl~k~~~~~~ 111 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG--GNP------------VLLVGNKIDLLPKSVNLSK 111 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC--CCC------------EEEEEEchhhCCCCCCHHH
Confidence 456677788888999999999997754 234455555432 234 4599999998653221
Q ss_pred hhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 311 KCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 311 ~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~ 347 (373)
..++.+.+++..++ .++++||++|.|++++|+.+.+.
T Consensus 112 ~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 112 IKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11222234556676 48999999999999999999764
No 439
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.11 E-value=3.5e-06 Score=72.08 Aligned_cols=114 Identities=25% Similarity=0.303 Sum_probs=97.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+||++|++.|..++..+++++++++++||++++.+|+++..|.+.+..... ..++|++ +|+|
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~n 117 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV------------VLGN 117 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE------------EEEE
Confidence 467899999999999999999999999999999999999999999887766544 2245654 9999
Q ss_pred ccccccchhhhhhHHHHHhhhcC-CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIREQRQD-FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+...+.+..++.+.+.+..+ ++++++||++|.|++++|+.+++.+.
T Consensus 118 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 118 KIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred CcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99998666666677777777776 89999999999999999999998653
No 440
>PRK12288 GTPase RsgA; Reviewed
Probab=98.11 E-value=1.3e-05 Score=76.92 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=63.4
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh--hhhhHHHHHhhhc
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQ 322 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~--v~~~~~~~~a~~~ 322 (373)
.++|.+++|++++...++..+..|...... .++|. ++|+||+|+..... ...+.. ...+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~------------VIVlNK~DL~~~~~~~~~~~~~-~~y~~~ 181 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEP------------LIVLNKIDLLDDEGRAFVNEQL-DIYRNI 181 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCE------------EEEEECccCCCcHHHHHHHHHH-HHHHhC
Confidence 568899999999999999999998764432 23454 49999999965432 222222 223457
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+++++++||++|.|++++++.+..
T Consensus 182 g~~v~~vSA~tg~GideL~~~L~~ 205 (347)
T PRK12288 182 GYRVLMVSSHTGEGLEELEAALTG 205 (347)
T ss_pred CCeEEEEeCCCCcCHHHHHHHHhh
Confidence 899999999999999999998875
No 441
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.10 E-value=4.2e-06 Score=69.85 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhccc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+++++|.+|||||||+|+++...+
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 899999999999999999996644
No 442
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=8.2e-05 Score=71.47 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=49.2
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++||+|+++|+.-...-+..+|..+.|.|.-..-.-..++ +++ +.+. +++||+-.-||.|...
T Consensus 82 ~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K-Lfe-Vcrl----R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 82 LVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK-LFE-VCRL----RDIPIFTFINKLDREG 147 (528)
T ss_pred EEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHH-HHH-HHhh----cCCceEEEeecccccc
Confidence 3999999999999987777788899999999986532222222 222 2222 6899999999999764
No 443
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.09 E-value=4.5e-06 Score=72.31 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=101.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||.|+..|..++..++..+++++++||+++..+|+.+..|+..+.+.....+.|++ +|+||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------lv~NK~D 117 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV------------LVGNKSD 117 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEEchh
Confidence 3578999999999999999999999999999999999999999998888776554456655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+...+.+..++...+++.++++|+++||++|.|+.++|..+++.+....
T Consensus 118 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 118 LHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred hhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9877777777778888888999999999999999999999998765443
No 444
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.09 E-value=4.7e-06 Score=70.86 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
..++|+++|.+|||||||+|++...
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC
Confidence 4578999999999999999999843
No 445
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.05 E-value=7.6e-05 Score=71.93 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
++-|.++|+.|+|||||+|+|+..
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhh
Confidence 678999999999999999999955
No 446
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.05 E-value=3e-05 Score=74.33 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
++|.|||.||||||||+|++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~ 25 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA 25 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999954
No 447
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.04 E-value=6e-06 Score=71.36 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++|+++|.||||||||+|++++.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 579999999999999999999943
No 448
>KOG2486|consensus
Probab=98.03 E-value=1.6e-05 Score=72.14 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+..+.+++++|.+|||||||+|-++.-
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~ 159 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRV 159 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhh
Confidence 345789999999999999999999844
No 449
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.03 E-value=6.8e-06 Score=70.20 Aligned_cols=111 Identities=27% Similarity=0.368 Sum_probs=97.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|++|+..|...+..++..++++++|||++++.+|+.+..|..++..... .++|++ +|+||+|
T Consensus 57 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~~i------------~v~NK~D 123 (169)
T cd04114 57 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAN-NKVITI------------LVGNKID 123 (169)
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCeEE------------EEEECcc
Confidence 356899999999999888999999999999999999999999999988876543 245544 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+..+.+++...+++++|||++|.|++++|+.+++.
T Consensus 124 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 124 LAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 98888888888888888888999999999999999999999974
No 450
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.01 E-value=8.3e-06 Score=73.03 Aligned_cols=111 Identities=19% Similarity=0.289 Sum_probs=92.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+++|||+|++.|..++..++..++++++|||++++.+|+++..|+..+.+... ++|++ ++|||+
T Consensus 58 i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~i~------------lv~nK~ 123 (215)
T PTZ00132 58 ICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE--NIPIV------------LVGNKV 123 (215)
T ss_pred EEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECc
Confidence 4577999999999999999999999999999999999999999999998876543 45554 899999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+... .+..+ ...+++..++.|+|+||++|.|++++|..+++.+.
T Consensus 124 Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 124 DVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred cCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 98643 23322 23567778899999999999999999999998653
No 451
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.00 E-value=3.2e-05 Score=71.70 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
|+|||.||||||||+|++++.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~ 21 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA 21 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC
Confidence 579999999999999999954
No 452
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.00 E-value=1.1e-05 Score=67.59 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=85.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..|..++..++..++++++|+|+++..++.....++..+.......++|++ +|+||+
T Consensus 44 ~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------iv~nK~ 111 (159)
T cd04159 44 VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLL------------VLGNKN 111 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEE------------EEEeCc
Confidence 45789999999999999999999999999999999999998888777766554333345554 999999
Q ss_pred ccccchhhhhh---HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCY---FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~---~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+....... ..........++++++||++|.|++++|+.+++
T Consensus 112 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 112 DLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 98665433211 111112234578999999999999999999976
No 453
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.00 E-value=0.00016 Score=67.55 Aligned_cols=27 Identities=15% Similarity=0.492 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccC
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYS 36 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~ 36 (373)
.|+|+|+|.+|+|||||+|.|+.....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccc
Confidence 589999999999999999999965443
No 454
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.99 E-value=6.1e-06 Score=84.60 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCC---ccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~---~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
+.++||+|++.|..++...+..+|++++|+|+++ +.+++.+.. +.. .++|+ ++++||
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~----~~vpi------------IvviNK 132 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR----RKTPF------------VVAANK 132 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH----cCCCE------------EEEEEC
Confidence 5699999999999999988999999999999998 444444332 111 24554 499999
Q ss_pred cccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+.. .++...+++|+++|++++.++.+.|+..+..+
T Consensus 133 ~D~~~----------~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev 169 (586)
T PRK04004 133 IDRIP----------GWKSTEDAPFLESIEKQSQRVQQELEEKLYEL 169 (586)
T ss_pred cCCch----------hhhhhcCchHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99852 34445578999999999999999998877543
No 455
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.98 E-value=1.1e-05 Score=69.67 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=82.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+..|..+...++++++++++|||++++.++++...|..... .++|+ ++|+||+|
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~i------------iiv~NK~D 130 (179)
T cd01890 68 LLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEI------------IPVINKID 130 (179)
T ss_pred EEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCE------------EEEEECCC
Confidence 35699999999999999999999999999999999888888776654321 23454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCCe---EEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQ---LLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~---~~E~SAktg~nv~elf~~i~~~ 347 (373)
+.+.+. ....+.+++.++++ ++++||++|.|++++|+.+++.
T Consensus 131 l~~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 131 LPSADP--ERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred CCcCCH--HHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 865332 22334556666664 9999999999999999999874
No 456
>KOG0070|consensus
Probab=97.97 E-value=3.6e-05 Score=65.69 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=92.0
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..-.+.+||..||.+++.+++.|+++++++|+|.|.++++.+.+.+.....+........+|++ +.+|
T Consensus 59 kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~ll------------v~aN 126 (181)
T KOG0070|consen 59 KNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLL------------VFAN 126 (181)
T ss_pred cceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEE------------EEec
Confidence 3455789999999999999999999999999999999999999988866666666555566666 9999
Q ss_pred ccccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 301 TTCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 301 K~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|.|+.+.-. ++...+..--......+-.|+|.+|.|+.|.++.+...+
T Consensus 127 KqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 127 KQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred hhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 999876654 332222222233446689999999999999999999854
No 457
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.96 E-value=9.8e-06 Score=70.84 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=86.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++|++|+..+..++..++++++++++|+|+++..+|+....+...+.+.....+.|++ +++||+|+
T Consensus 65 ~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi------------vv~NK~Dl 132 (190)
T cd00879 65 FKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL------------ILGNKIDL 132 (190)
T ss_pred EEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE------------EEEeCCCC
Confidence 458999999998888888999999999999999999999888888777765444456665 99999998
Q ss_pred ccchhhhhhHHHHHhhh----------------cCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVKCYFEEIREQR----------------QDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~~~~~~~~a~~----------------~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.. .+..++.+.+... ..+++++|||++|+|++++|+.+++.
T Consensus 133 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 133 PG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CC--CcCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 53 3344444443321 23679999999999999999999863
No 458
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.94 E-value=0.00024 Score=68.81 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=47.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|.||+|+-+|-......++-.|+++++.|.....--+. +.......+ ...+.++|-||+|..+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~-----~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALA-----LGLKPIVVINKIDRPD 134 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHH-----cCCCcEEEEeCCCCCC
Confidence 349999999999999999999999999999999876321110 111111111 3566677889999876
No 459
>KOG0458|consensus
Probab=97.94 E-value=5.7e-05 Score=74.88 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=44.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHH----HHHHHH--HHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS----VKCYFE--EIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~----l~~~~~--~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+.|++|+..|-.-.......+|.+++|.|.+-. .||. -.+..+ .+.+.. .--.++++-||.|+.+
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L---gi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL---GISQLIVAINKMDLVS 329 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc---CcceEEEEeecccccC
Confidence 389999999988877666667889999999998653 3332 111111 112221 2344678889999886
No 460
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.94 E-value=1.3e-05 Score=67.40 Aligned_cols=112 Identities=38% Similarity=0.497 Sum_probs=100.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|+.|+..+..++...+..++++++|||++++.+++++..|...+........+|++ +|+||+|
T Consensus 48 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------vv~nK~D 115 (160)
T cd00876 48 TLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV------------LVGNKCD 115 (160)
T ss_pred EEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECCc
Confidence 4678999999999999999999999999999999999999999999888877654456655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..+++..++..++++|+++||++|.|++++|+.|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 116 LENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 98878888888999999889999999999999999999999873
No 461
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.92 E-value=1.7e-05 Score=68.46 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+..++++++|.+|||||||+|+++...+
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3457999999999999999999996654
No 462
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.91 E-value=0.00014 Score=68.76 Aligned_cols=63 Identities=25% Similarity=0.248 Sum_probs=43.7
Q ss_pred eeeeccccccchhHh--HHhhhhhcCeEEEEEeCCChhhH---HHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPAM--RRLSIATAHAFLLVYSTTCLESF---QSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~--~~~~~~~~~~~i~v~dv~~~~s~---~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+.||.|+|.|-.. +-..-...|-.+++...++.-+- +++- +.-. -.+|++++-||+|+..+
T Consensus 203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLg-----i~~a----~~lPviVvvTK~D~~~d 270 (527)
T COG5258 203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLG-----IALA----MELPVIVVVTKIDMVPD 270 (527)
T ss_pred EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhh-----hhhh----hcCCEEEEEEecccCcH
Confidence 788999999999653 33344557888999888774322 2221 1111 47999999999999864
No 463
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.90 E-value=1.7e-05 Score=67.31 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...+++++|.+|||||||+|++...
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~ 124 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR 124 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999843
No 464
>KOG1487|consensus
Probab=97.90 E-value=3.5e-05 Score=69.10 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=81.6
Q ss_pred eeeeccccccchh-------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccc
Q psy16673 145 VDILDTCGDLQFP-------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~-------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~ 217 (373)
+++.|.+|..+-. .......+.++.+++|.|+..+-+...+-+ .++.-..-....-|--+...|.|...
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie--~eleg~girlnk~pp~i~~kkKdkgG-- 183 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIE--KELEGFGIRLNKQPPNIGTKKKDKGG-- 183 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHH--HhhhcceeeccCCCCCccccccccCc--
Confidence 8888888743211 122233567899999999999887776533 12221111112222222233444332
Q ss_pred cccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
-...... .....-.++...+-..++.+.+-||+|.-. ++..+...+- -+| ++.
T Consensus 184 Inlt~~~------LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd-------LIdvVegnr~--yVp------------~iy 236 (358)
T KOG1487|consen 184 INLTGTH------LDLDLQRSILSEYRIHSADIALRFDATADD-------LIDVVEGNRI--YVP------------CIY 236 (358)
T ss_pred eeeecch------hhHHHHHHHHHHhhhcchheeeecCcchhh-------hhhhhccCce--eee------------eee
Confidence 0000000 000111122223333344455566666532 2223332221 234 558
Q ss_pred eccccccccchhhhhhHHHHHhhhcCCe-EEEeccCCCcCHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQRQDFQ-LLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~-~~E~SAktg~nv~elf~~i~~ 346 (373)
+.||.|...-. .+.-...+| .+.+||.++.|++++++.+-.
T Consensus 237 vLNkIdsISiE--------ELdii~~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 237 VLNKIDSISIE--------ELDIIYTIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred eecccceeeee--------ccceeeeccceeecccccccchHHHHHHHhh
Confidence 99999953321 112223344 799999999999999998865
No 465
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.86 E-value=2.6e-05 Score=66.90 Aligned_cols=107 Identities=12% Similarity=0.179 Sum_probs=82.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++|++|+..+......++++++++++|+|+++..++.....+...+.......++|++ +++||+
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i------------vv~nK~ 125 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL------------VFANKQ 125 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECC
Confidence 45778999999998888888999999999999999999998888777666554443456655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--------CeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--------FQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--------~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+....... .+....+ .++++|||++|.|++++|++|++
T Consensus 126 D~~~~~~~~-----~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 126 DLATAAPAE-----EIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCccCCCHH-----HHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 986543221 1222222 35789999999999999999986
No 466
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.84 E-value=5.3e-05 Score=69.33 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=50.8
Q ss_pred ccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 153 DLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++|..+.+.+++++|++++|||+.++. +|+.+..|+..+.. ..+|++||+||+||.+
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-----~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-----QNIEPIIVLNKIDLLD 81 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEECcccCC
Confidence 3778888889999999999999999877 99999999986653 5799999999999964
No 467
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.84 E-value=2.4e-05 Score=73.33 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+++|.||||||||+|++++.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~ 144 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK 144 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45689999999999999999999954
No 468
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.82 E-value=4e-05 Score=66.42 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=85.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+..++.+++.++.+++++|+|+|.++...+++.......+.......++|++ +++||.|+
T Consensus 60 ~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piL------------Il~NK~D~ 127 (175)
T PF00025_consen 60 LTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPIL------------ILANKQDL 127 (175)
T ss_dssp EEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEE------------EEEESTTS
T ss_pred EEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEE------------EEeccccc
Confidence 458899999999999999999999999999999999998888877777665544456655 99999998
Q ss_pred ccchhhh-hhHH---HHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 305 ESFQSVK-CYFE---EIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 305 ~~~r~v~-~~~~---~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
.+.-... .... ..+.....+.++.|||++|+|+.+.|++|.+.
T Consensus 128 ~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 128 PDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 6532211 1111 11222345779999999999999999999874
No 469
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.80 E-value=4.7e-05 Score=67.66 Aligned_cols=71 Identities=10% Similarity=0.222 Sum_probs=55.3
Q ss_pred cceeeeccCCCCCchhhhhccccc-cEEEEEEecCCc-cchhhHHHHHHHHHhhc--cCCCCCchhhccccccceeeeec
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATA-HAFLLVYSTTCL-ESFQSVKCYFEEIREQR--QDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a-~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~--~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
.+.++|++|+.++......+++.+ +++++|+|+++. .++..+..|...+.... ....+|++ +++
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvl------------iv~ 116 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVL------------IAC 116 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEE------------EEe
Confidence 356999999999988888889998 999999999998 77888777665544321 12346655 999
Q ss_pred ccccccc
Q psy16673 300 STTCLES 306 (373)
Q Consensus 300 nK~Dl~~ 306 (373)
||+|+..
T Consensus 117 NK~Dl~~ 123 (203)
T cd04105 117 NKQDLFT 123 (203)
T ss_pred cchhhcc
Confidence 9999854
No 470
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0001 Score=76.44 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=53.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++.||+||-+|.......++-.|++++|+|....-....-.-|....+ ..+|.+++-||.|...
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~------~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK------YGVPRILFVNKMDRLG 142 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh------cCCCeEEEEECccccc
Confidence 349999999999999999999999999999999877544433333544332 5799999999999876
No 471
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.77 E-value=3.5e-05 Score=71.84 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+++|.||||||||+|++.+.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~ 141 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGK 141 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34689999999999999999999954
No 472
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.77 E-value=2.9e-05 Score=73.91 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=27.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL 46 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~ 46 (373)
.+..+++.+||-||||||||+|+++ .....+++..
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~-----~k~~~~~s~~ 163 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLL-----GKKVAKTSNR 163 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHh-----cccceeeCCC
Confidence 4556899999999999999999999 3344555544
No 473
>KOG1143|consensus
Probab=97.76 E-value=0.00019 Score=67.54 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=41.5
Q ss_pred eeeeccccccchhHhHHhhhhh--cCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT--AHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~--~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.+|+.+|.......+.+ -|..++|.+.... .+-+.+. .++. -++|+.++-+|.|+.+
T Consensus 251 vTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLg----l~~A-----L~iPfFvlvtK~Dl~~ 317 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLG----LIAA-----LNIPFFVLVTKMDLVD 317 (591)
T ss_pred EEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHH----HHHH-----hCCCeEEEEEeecccc
Confidence 8899999999997654443333 3667777776543 2333332 1222 3799999999999986
No 474
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.75 E-value=3.3e-05 Score=67.81 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
..+++++|.+|||||||+|.+....
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999553
No 475
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.74 E-value=3.9e-05 Score=64.07 Aligned_cols=110 Identities=26% Similarity=0.389 Sum_probs=96.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++|+.|+..+.......+++++++++|+|++++.+++.+..|...+..... ...| +++++||+|
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p------------~ivv~nK~D 116 (159)
T cd00154 50 KLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAP-ENIP------------IILVGNKID 116 (159)
T ss_pred EEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCc------------EEEEEEccc
Confidence 467899999999999999999999999999999999999999999988887653 2344 459999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+...+....++.+.++...+++|++|||++|.|++++|+.+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 117 LEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 9866777778888888888999999999999999999999863
No 476
>KOG0075|consensus
Probab=97.73 E-value=5.8e-05 Score=61.89 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=86.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+.+|++++..++++.+++++|.|+.++...+.-+.-...+.....-.++|++ +.|||.|+
T Consensus 67 iklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L------------VLGnK~d~ 134 (186)
T KOG0075|consen 67 IKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL------------VLGNKIDL 134 (186)
T ss_pred EEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE------------EecccccC
Confidence 578999999999999999999999999999999999888777755555555555567776 99999998
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.+. .......+..--...-+-.|-+|+|...|++.+.+.+++..+.
T Consensus 135 ~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 135 PGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred cccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 553 2222222211112223568999999999999999999986543
No 477
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.73 E-value=0.00012 Score=61.92 Aligned_cols=83 Identities=13% Similarity=0.034 Sum_probs=54.0
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
|.+++|+|+.++.+..+. +... ......+.| +++|.||+|+.....+. .+...+....+.+++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p------------~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKK------------LILVLNKADLVPKEVLR-KWLAYLRHSYPTIPF 63 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcCCCC------------EEEEEechhcCCHHHHH-HHHHHHHhhCCceEE
Confidence 568899999988766543 2211 111112345 45999999996543321 222233344467789
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
.+||++|.|++++++.+.+.
T Consensus 64 ~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 64 KISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred EEeccCCcChhhHHHHHHHH
Confidence 99999999999999998764
No 478
>KOG0073|consensus
Probab=97.73 E-value=5.5e-05 Score=63.18 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=89.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
-++.+||.-||...+++++.||..+|+.|.|+|.+++..|++.......+.....-.+. ++++++||.
T Consensus 60 ~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~------------~~Lvlank~ 127 (185)
T KOG0073|consen 60 YTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGA------------PLLVLANKQ 127 (185)
T ss_pred eEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCC------------ceEEEEecC
Confidence 34679999999999999999999999999999999999999888865555443222233 455999999
Q ss_pred ccccc---hhhhhh-HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESF---QSVKCY-FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~---r~v~~~-~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+... ..+... .-+.+++...++.+-|||.||+++.+-|++++...
T Consensus 128 dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 128 DLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred cCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 98632 333322 22455577889999999999999999999998744
No 479
>KOG0410|consensus
Probab=97.64 E-value=0.00029 Score=65.40 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=24.2
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
...+|.++.|.|+++|.--+.....+.-+...
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~i 286 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQI 286 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhc
Confidence 45789999999999998777666665555543
No 480
>KOG4273|consensus
Probab=97.64 E-value=0.00031 Score=62.73 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.0
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
...+++.+||.+....+..++.|+..-.-. ..-....+|||.|...
T Consensus 78 pl~a~vmvfdlse~s~l~alqdwl~htdin----sfdillcignkvdrvp 123 (418)
T KOG4273|consen 78 PLQAFVMVFDLSEKSGLDALQDWLPHTDIN----SFDILLCIGNKVDRVP 123 (418)
T ss_pred ceeeEEEEEeccchhhhHHHHhhccccccc----cchhheeccccccccc
Confidence 457899999999999999999998643211 1122456799999875
No 481
>KOG0082|consensus
Probab=97.63 E-value=0.0011 Score=63.03 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=50.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh-------HHHHH---HHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES-------FQSVK---CYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s-------~~~l~---~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|.+||-.-+.=|...+.++++++||.++++-.- -+.+. .+++.+.+.. -..+.+++|..||.||.
T Consensus 197 f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~-~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 197 FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK-WFANTSIILFLNKKDLF 275 (354)
T ss_pred eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc-ccccCcEEEEeecHHHH
Confidence 9999999997777778888999999999988765221 11121 2344444433 23578999999999998
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 276 e 276 (354)
T KOG0082|consen 276 E 276 (354)
T ss_pred H
Confidence 5
No 482
>KOG0461|consensus
Probab=97.62 E-value=0.0011 Score=62.12 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+-.+++-++|.-.+|||+|..++.
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals 28 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALS 28 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHH
Confidence 346899999999999999999997
No 483
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.61 E-value=8.3e-05 Score=63.01 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
....+|+++|.+|||||||+|.++..
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc
Confidence 34678999999999999999999944
No 484
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.59 E-value=0.00027 Score=59.92 Aligned_cols=90 Identities=10% Similarity=0.068 Sum_probs=58.0
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
++..+|.+++|.|+.++....+ ..+.+.+... ..+.|++ +|.||+|+..+... ......+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~--~~~~p~i------------lVlNKiDl~~~~~~-~~~~~~~~~~~ 68 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKE--KPHKHLI------------FVLNKCDLVPTWVT-ARWVKILSKEY 68 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHhc--cCCCCEE------------EEEEchhcCCHHHH-HHHHHHHhcCC
Confidence 4678899999999998743321 1222233221 2234554 99999999654432 23344444443
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
....+.+||+.|.|++++++.+....
T Consensus 69 ~~~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 PTIAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cEEEEEeeccccccHHHHHHHHHHHH
Confidence 33357899999999999999997754
No 485
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.59 E-value=9.9e-05 Score=66.48 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=50.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++.+.+.+....+..... .++| +++|+||+|
T Consensus 74 ~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-----~~~p------------~ilviNKiD 136 (222)
T cd01885 74 LINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-----ERVK------------PVLVINKID 136 (222)
T ss_pred EEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-----cCCC------------EEEEEECCC
Confidence 46789999999999999999999999999999999887765433332221 2345 449999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 74
No 486
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00018 Score=68.34 Aligned_cols=42 Identities=12% Similarity=-0.032 Sum_probs=29.0
Q ss_pred cceeeeeccccccccchhh-hhhHHHHHhhhcCCeEEEeccCC
Q psy16673 292 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQLLECSAKD 333 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v-~~~~~~~~a~~~~~~~~E~SAkt 333 (373)
.++++.++||.|....... -...-+.++...+.+++.+||+.
T Consensus 206 ~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 206 AKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred cCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 4455699999998665431 13344666677778899999974
No 487
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.57 E-value=0.0023 Score=59.42 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=51.9
Q ss_pred ceeeeccCCCCCchh-----hh-------hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 225 VDILDTCGDLQFPAM-----RR-------LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 225 ~~~~dtag~~~~~~~-----~~-------~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.-++||+|....... .. ..-...+..++|.|++.. .+.+... ....+..+.
T Consensus 157 ~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~-~~f~~~~~~-------------- 219 (272)
T TIGR00064 157 VVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQA-KVFNEAVGL-------------- 219 (272)
T ss_pred EEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHH-HHHHhhCCC--------------
Confidence 347788886654321 11 111236788999999753 3333221 222221111
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
.-+|.||.|....-...- ..+...++|+.+++ +|++++++
T Consensus 220 --~g~IlTKlDe~~~~G~~l----~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 220 --TGIILTKLDGTAKGGIIL----SIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred --CEEEEEccCCCCCccHHH----HHHHHHCcCEEEEe--CCCChHhC
Confidence 128999999876655433 33334578988888 99998665
No 488
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00081 Score=64.97 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=45.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCC---ChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~---~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+.|.+|++++-.-....+...|..++|.+.+ .+.+.|.+.- .... .....++|.||+|..+
T Consensus 52 ~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~i-----Ldll---gi~~giivltk~D~~d 117 (447)
T COG3276 52 MGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLI-----LDLL---GIKNGIIVLTKADRVD 117 (447)
T ss_pred eEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHH-----HHhc---CCCceEEEEecccccc
Confidence 889999999998766666677889999999984 4455555422 1121 2233588889999876
No 489
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.53 E-value=0.00014 Score=62.03 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=82.4
Q ss_pred cceeeeccCCC----CCchhhhhc---cccccEEEEEEecCCc-cchhhHHHHHHHHHhhccC-CCCCchhhccccccce
Q psy16673 224 DVDILDTCGDL----QFPAMRRLS---IATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHA 294 (373)
Q Consensus 224 ~~~~~dtag~~----~~~~~~~~s---~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~ 294 (373)
.+.++||+|+. .+..+...+ +..++++++|+|++++ .+++++..|.+++....+. .+.|+
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~----------- 117 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPR----------- 117 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCcccccccc-----------
Confidence 35688888863 222333333 3468999999999999 8999999999988776532 24554
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
++|+||+|+.....+.......+....++++++|||++|.|++++|+.++++
T Consensus 118 -ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 118 -IVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -EEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 4999999997766654433333333357899999999999999999999874
No 490
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.53 E-value=0.0003 Score=58.37 Aligned_cols=80 Identities=20% Similarity=0.132 Sum_probs=54.6
Q ss_pred ccccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhh
Q psy16673 243 SIATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 321 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~ 321 (373)
....|+.++++.|++++.+ |..-. ....+.| +|=|.+|.|+..+. ...+.++.+-+.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~f---------a~~f~~p------------vIGVITK~Dl~~~~-~~i~~a~~~L~~ 117 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGF---------ASMFNKP------------VIGVITKIDLPSDD-ANIERAKKWLKN 117 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchh---------hcccCCC------------EEEEEECccCccch-hhHHHHHHHHHH
Confidence 4558899999999999765 32111 1112344 44899999998322 133355555555
Q ss_pred cCCe-EEEeccCCCcCHHHHHHHH
Q psy16673 322 QDFQ-LLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 322 ~~~~-~~E~SAktg~nv~elf~~i 344 (373)
-|+. +|++||.+|+||++|.+.|
T Consensus 118 aG~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 118 AGVKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred cCCCCeEEEECCCCcCHHHHHHHH
Confidence 5654 7999999999999999876
No 491
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.52 E-value=0.00014 Score=64.00 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|......++++++++++|||+++.. +.....+...+.. .++|++ +|+||+|
T Consensus 66 ~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~i------------iv~NK~D 128 (194)
T cd01891 66 KINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPI------------VVINKID 128 (194)
T ss_pred EEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEE------------EEEECCC
Confidence 4569999999999999999999999999999999853 2333333333322 235544 9999999
Q ss_pred cccchhh-hhhHHHHHh-------hhcCCeEEEeccCCCcCHHH
Q psy16673 304 LESFQSV-KCYFEEIRE-------QRQDFQLLECSAKDNYNIKE 339 (373)
Q Consensus 304 l~~~r~v-~~~~~~~~a-------~~~~~~~~E~SAktg~nv~e 339 (373)
+...+.. ..++...+. ...+++++++||++|.|+.+
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 129 RPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhccccccc
Confidence 8654321 122222222 23478999999999988743
No 492
>PRK12288 GTPase RsgA; Reviewed
Probab=97.50 E-value=0.0001 Score=70.77 Aligned_cols=21 Identities=33% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHhc
Q psy16673 13 LVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~~ 33 (373)
++|+|.+|||||||+|+|+..
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHHHhccc
Confidence 799999999999999999943
No 493
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.50 E-value=0.00025 Score=59.04 Aligned_cols=76 Identities=11% Similarity=0.051 Sum_probs=49.9
Q ss_pred hccccccEEEEEEecCCccchh--hHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 242 LSIATAHAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 242 ~s~~~a~~~i~v~dvt~~~S~~--~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
.++..+|.+++|+|+.++.+.. .+..+.... . .+.| +++|.||+|+..+..+. ......
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~--~~k~------------~iivlNK~DL~~~~~~~--~~~~~~ 67 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D--PRKK------------NILLLNKADLLTEEQRK--AWAEYF 67 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c--CCCc------------EEEEEechhcCCHHHHH--HHHHHH
Confidence 4677899999999999987765 333333221 1 2344 45999999996544322 222333
Q ss_pred hhcCCeEEEeccCCCcC
Q psy16673 320 QRQDFQLLECSAKDNYN 336 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~n 336 (373)
+..+.+++++||++|.+
T Consensus 68 ~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 68 KKEGIVVVFFSALKENA 84 (141)
T ss_pred HhcCCeEEEEEecCCCc
Confidence 44568899999998764
No 494
>KOG1491|consensus
Probab=97.47 E-value=0.00041 Score=64.74 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
..+|+-|||-||||||||+|.++....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a 45 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA 45 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC
Confidence 367999999999999999999995533
No 495
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.46 E-value=0.00018 Score=69.64 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.+|+++|.+|||||||+|+++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999954
No 496
>PRK13796 GTPase YqeH; Provisional
Probab=97.45 E-value=0.00015 Score=70.42 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++++||.+|||||||+|+++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999954
No 497
>KOG0076|consensus
Probab=97.45 E-value=0.00028 Score=59.66 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=93.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+||-.||+.-++++..||.-+|++++++|+++++.|+.-+...+.+.....-.++|++ +.+||
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L------------~lank 135 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVL------------VLANK 135 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchh------------hhcch
Confidence 345668999999999999999999999999999999999999999988888887777788988 99999
Q ss_pred cccccchhhh---hhHHH-HHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVK---CYFEE-IREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~---~~~~~-~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.|+.+...+. ...+. .+--...++|..|||.+|+||++-.+++++..
T Consensus 136 qd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 136 QDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 9986654332 22221 11123348899999999999999999999843
No 498
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.42 E-value=0.00011 Score=62.36 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-.++++|.+|||||||+|.++..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999954
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.39 E-value=0.0063 Score=57.84 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=27.1
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
+|.||.|....-... -..+...++|+.+++ +|++++.+
T Consensus 264 iIlTKlD~t~~~G~~----l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 264 IILTKLDGTAKGGVV----FAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred EEEECCCCCCCccHH----HHHHHHHCCCEEEEe--CCCChhhC
Confidence 899999965443332 333455589999998 89998665
No 500
>KOG0071|consensus
Probab=97.38 E-value=0.0003 Score=57.32 Aligned_cols=112 Identities=12% Similarity=0.115 Sum_probs=82.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+||..|+.+.+.+++.||.++.++|||.|..++...++.+.-...+...+.....| +++.+||.|+
T Consensus 63 fNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~------------~LvlANkQDl 130 (180)
T KOG0071|consen 63 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI------------ILILANKQDL 130 (180)
T ss_pred EeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce------------EEEEecCccc
Confidence 4578889999999999999999999999999999977777666333333333333344 4499999999
Q ss_pred ccchhhhhh---HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVKCY---FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~~~---~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+.+.+- ....-++-...-...|||.+|.++.|-|.++....
T Consensus 131 p~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 131 PDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 777654422 22222333345578999999999999999998753
Done!