Query psy16673
Match_columns 373
No_of_seqs 215 out of 2131
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 19:05:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 3.1E-36 1.1E-40 269.6 18.2 163 8-348 11-174 (216)
2 2iwr_A Centaurin gamma 1; ANK 100.0 4.2E-29 1.4E-33 215.3 18.5 165 5-349 2-168 (178)
3 3ihw_A Centg3; RAS, centaurin, 100.0 5.3E-29 1.8E-33 216.8 18.9 164 5-349 15-179 (184)
4 3q3j_B RHO-related GTP-binding 100.0 2.1E-29 7.2E-34 224.8 16.2 177 7-350 24-203 (214)
5 2j0v_A RAC-like GTP-binding pr 100.0 2.7E-29 9.3E-34 223.0 16.7 180 4-354 3-184 (212)
6 2g3y_A GTP-binding protein GEM 100.0 4E-29 1.4E-33 222.7 17.8 166 7-349 34-202 (211)
7 3t5g_A GTP-binding protein RHE 100.0 2.5E-29 8.5E-34 217.3 16.0 167 6-349 2-168 (181)
8 3cbq_A GTP-binding protein REM 100.0 6.2E-29 2.1E-33 218.5 18.6 166 6-348 19-186 (195)
9 3c5c_A RAS-like protein 12; GD 100.0 4.6E-29 1.6E-33 217.6 17.3 166 6-348 17-184 (187)
10 2hup_A RAS-related protein RAB 100.0 1.1E-28 3.6E-33 217.9 19.5 164 7-348 26-191 (201)
11 3reg_A RHO-like small GTPase; 100.0 7.9E-29 2.7E-33 217.0 17.5 166 6-348 19-186 (194)
12 2hxs_A RAB-26, RAS-related pro 100.0 8.5E-29 2.9E-33 213.0 17.2 166 7-348 3-171 (178)
13 3kkq_A RAS-related protein M-R 100.0 2.1E-28 7.3E-33 211.8 18.8 165 7-348 15-180 (183)
14 2fn4_A P23, RAS-related protei 100.0 3.8E-28 1.3E-32 209.1 20.0 167 7-350 6-172 (181)
15 2ew1_A RAS-related protein RAB 100.0 1.9E-28 6.5E-33 216.6 18.3 164 8-349 24-188 (201)
16 3tkl_A RAS-related protein RAB 100.0 3E-28 1E-32 213.1 18.8 169 8-354 14-183 (196)
17 4dsu_A GTPase KRAS, isoform 2B 100.0 1.7E-28 5.9E-33 213.0 17.1 169 8-354 2-170 (189)
18 1c1y_A RAS-related protein RAP 100.0 4.3E-28 1.5E-32 206.0 18.7 120 10-215 3-122 (167)
19 2hjg_A GTP-binding protein ENG 100.0 4.6E-29 1.6E-33 245.9 14.3 193 145-360 53-359 (436)
20 2efe_B Small GTP-binding prote 100.0 4.4E-28 1.5E-32 209.1 18.5 167 4-348 6-173 (181)
21 3bwd_D RAC-like GTP-binding pr 100.0 1.2E-28 4E-33 212.9 14.8 175 5-348 3-179 (182)
22 3q85_A GTP-binding protein REM 100.0 3.8E-28 1.3E-32 207.2 17.8 164 10-350 2-167 (169)
23 1z08_A RAS-related protein RAB 100.0 2.7E-28 9.3E-33 208.1 16.8 164 7-348 3-167 (170)
24 1r2q_A RAS-related protein RAB 100.0 4.8E-28 1.7E-32 206.1 18.3 164 7-348 3-167 (170)
25 1m7b_A RND3/RHOE small GTP-bin 100.0 1.6E-28 5.4E-33 213.4 15.5 175 7-348 4-181 (184)
26 1kao_A RAP2A; GTP-binding prot 100.0 5.3E-28 1.8E-32 205.1 18.2 162 10-348 3-164 (167)
27 2erx_A GTP-binding protein DI- 100.0 4.3E-28 1.5E-32 206.8 17.7 164 9-348 2-165 (172)
28 2fu5_C RAS-related protein RAB 100.0 6.9E-29 2.4E-33 214.9 12.8 164 8-349 6-170 (183)
29 2nzj_A GTP-binding protein REM 100.0 4.2E-28 1.4E-32 207.9 17.5 165 8-349 2-168 (175)
30 2cjw_A GTP-binding protein GEM 100.0 6.3E-28 2.2E-32 211.5 19.0 165 8-349 4-171 (192)
31 2atx_A Small GTP binding prote 100.0 2.5E-28 8.7E-33 213.6 16.4 175 7-348 15-191 (194)
32 3oes_A GTPase rhebl1; small GT 100.0 1.2E-28 4E-33 217.4 14.3 169 5-350 19-187 (201)
33 2a5j_A RAS-related protein RAB 100.0 5.5E-28 1.9E-32 211.2 18.3 166 6-349 17-183 (191)
34 2p5s_A RAS and EF-hand domain 100.0 3.6E-28 1.2E-32 213.9 17.2 171 6-348 24-195 (199)
35 1u8z_A RAS-related protein RAL 100.0 1.2E-27 4.2E-32 203.0 19.8 163 9-348 3-165 (168)
36 2q3h_A RAS homolog gene family 100.0 3.3E-28 1.1E-32 214.1 16.8 178 6-350 16-195 (201)
37 3dz8_A RAS-related protein RAB 100.0 2.2E-28 7.5E-33 213.7 15.3 163 8-348 21-184 (191)
38 2atv_A RERG, RAS-like estrogen 100.0 1E-27 3.5E-32 210.3 19.3 167 5-349 23-190 (196)
39 3q72_A GTP-binding protein RAD 100.0 3.8E-28 1.3E-32 206.5 16.0 162 10-349 2-163 (166)
40 2fg5_A RAB-22B, RAS-related pr 100.0 6.9E-28 2.4E-32 210.8 17.9 165 6-348 19-184 (192)
41 2bov_A RAla, RAS-related prote 100.0 1E-27 3.4E-32 211.3 18.9 167 7-350 11-177 (206)
42 1z0f_A RAB14, member RAS oncog 100.0 1.3E-27 4.3E-32 205.5 19.0 164 7-348 12-176 (179)
43 3tw8_B RAS-related protein RAB 100.0 3.3E-28 1.1E-32 209.5 15.2 168 7-353 6-174 (181)
44 2a9k_A RAS-related protein RAL 100.0 2.1E-27 7.3E-32 205.5 20.2 167 7-350 15-181 (187)
45 1ek0_A Protein (GTP-binding pr 100.0 1E-27 3.5E-32 204.1 17.9 163 10-347 3-166 (170)
46 2bme_A RAB4A, RAS-related prot 100.0 1.6E-27 5.4E-32 206.7 19.4 164 8-349 8-172 (186)
47 1z0j_A RAB-22, RAS-related pro 100.0 1.4E-27 4.9E-32 203.4 18.7 163 8-348 4-167 (170)
48 2il1_A RAB12; G-protein, GDP, 100.0 1.1E-27 3.8E-32 209.6 18.3 122 7-215 23-145 (192)
49 1gwn_A RHO-related GTP-binding 100.0 3.8E-28 1.3E-32 215.3 15.5 175 7-348 25-202 (205)
50 1mh1_A RAC1; GTP-binding, GTPa 100.0 8.4E-28 2.9E-32 208.1 17.2 174 8-348 3-178 (186)
51 2bcg_Y Protein YP2, GTP-bindin 100.0 6.7E-28 2.3E-32 213.1 16.5 165 7-349 5-170 (206)
52 2gf9_A RAS-related protein RAB 100.0 1.3E-27 4.5E-32 208.3 18.0 164 7-348 19-183 (189)
53 2j1l_A RHO-related GTP-binding 100.0 7.3E-28 2.5E-32 214.6 16.7 175 8-349 32-208 (214)
54 1z2a_A RAS-related protein RAB 100.0 1.3E-27 4.5E-32 203.2 17.5 162 8-348 3-165 (168)
55 2oil_A CATX-8, RAS-related pro 100.0 1.7E-27 5.8E-32 208.1 18.6 164 7-348 22-186 (193)
56 2o52_A RAS-related protein RAB 100.0 1.2E-27 4.1E-32 210.9 17.4 164 8-349 23-187 (200)
57 2gf0_A GTP-binding protein DI- 100.0 1.4E-27 4.8E-32 209.2 17.8 168 7-351 5-172 (199)
58 3cpj_B GTP-binding protein YPT 100.0 1.4E-27 4.8E-32 214.0 17.5 165 7-349 10-175 (223)
59 1zbd_A Rabphilin-3A; G protein 100.0 2.5E-27 8.6E-32 208.7 18.9 165 7-349 5-170 (203)
60 2g6b_A RAS-related protein RAB 100.0 1.7E-27 5.9E-32 205.2 17.4 165 7-349 7-173 (180)
61 4dcu_A GTP-binding protein ENG 100.0 3E-28 1E-32 241.4 14.2 195 145-362 73-381 (456)
62 1g16_A RAS-related protein SEC 100.0 1.3E-27 4.6E-32 203.6 16.1 162 9-349 2-164 (170)
63 2gco_A H9, RHO-related GTP-bin 100.0 2.4E-27 8.2E-32 209.0 18.1 176 6-348 21-198 (201)
64 2y8e_A RAB-protein 6, GH09086P 100.0 2.7E-27 9.3E-32 203.4 18.0 162 9-348 13-175 (179)
65 1z06_A RAS-related protein RAB 100.0 1.9E-27 6.3E-32 207.3 17.2 166 6-348 16-186 (189)
66 4gzl_A RAS-related C3 botulinu 100.0 1.1E-27 3.7E-32 211.9 15.9 175 6-347 26-202 (204)
67 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.6E-27 2.2E-31 201.0 19.0 123 7-214 4-129 (177)
68 1x3s_A RAS-related protein RAB 99.9 3.8E-27 1.3E-31 205.6 17.4 163 9-349 14-177 (195)
69 3clv_A RAB5 protein, putative; 99.9 6.7E-27 2.3E-31 205.0 18.9 200 5-348 2-202 (208)
70 1ky3_A GTP-binding protein YPT 99.9 4.4E-27 1.5E-31 202.6 17.0 124 7-215 5-132 (182)
71 2fv8_A H6, RHO-related GTP-bin 99.9 5.2E-27 1.8E-31 207.8 17.8 176 6-348 21-198 (207)
72 3bc1_A RAS-related protein RAB 99.9 7.6E-27 2.6E-31 203.2 17.8 175 7-349 8-184 (195)
73 3t1o_A Gliding protein MGLA; G 99.9 2.1E-27 7.3E-32 207.4 13.7 110 145-350 76-192 (198)
74 2ce2_X GTPase HRAS; signaling 99.9 2.2E-26 7.6E-31 194.6 19.0 161 10-348 3-163 (166)
75 3con_A GTPase NRAS; structural 99.9 1.2E-26 4E-31 202.1 17.8 165 8-350 19-183 (190)
76 2f7s_A C25KG, RAS-related prot 99.9 6.5E-27 2.2E-31 208.4 15.9 175 8-349 23-198 (217)
77 3cph_A RAS-related protein SEC 99.9 1.3E-26 4.6E-31 205.3 17.7 165 7-350 17-182 (213)
78 2yc2_C IFT27, small RAB-relate 99.9 2.1E-27 7.1E-32 209.5 11.4 168 6-348 16-190 (208)
79 4djt_A GTP-binding nuclear pro 99.9 8.9E-27 3E-31 207.7 15.1 178 7-362 8-187 (218)
80 1vg8_A RAS-related protein RAB 99.9 1.9E-26 6.5E-31 203.4 16.5 123 7-214 5-130 (207)
81 1r8s_A ADP-ribosylation factor 99.9 3.9E-26 1.3E-30 193.7 15.6 70 145-215 46-115 (164)
82 4bas_A ADP-ribosylation factor 99.9 3.1E-26 1.1E-30 200.6 15.4 122 6-215 13-141 (199)
83 2zej_A Dardarin, leucine-rich 99.9 1.3E-26 4.4E-31 201.5 12.6 121 10-215 2-126 (184)
84 3gj0_A GTP-binding nuclear pro 99.9 1.5E-26 5.2E-31 206.8 12.8 121 7-215 12-133 (221)
85 1zd9_A ADP-ribosylation factor 99.9 4.3E-26 1.5E-30 198.7 14.4 121 6-215 18-138 (188)
86 3l0i_B RAS-related protein RAB 99.9 7.9E-28 2.7E-32 211.7 2.8 163 8-348 31-194 (199)
87 1fzq_A ADP-ribosylation factor 99.9 9.4E-26 3.2E-30 195.6 15.2 70 145-215 62-131 (181)
88 1zj6_A ADP-ribosylation factor 99.9 1.5E-25 5E-30 194.9 16.2 119 7-215 13-131 (187)
89 3th5_A RAS-related C3 botulinu 99.9 4.4E-28 1.5E-32 214.1 0.0 174 7-347 27-202 (204)
90 3llu_A RAS-related GTP-binding 99.9 7.3E-26 2.5E-30 198.7 14.1 115 145-347 71-194 (196)
91 2b6h_A ADP-ribosylation factor 99.9 1.5E-25 5E-30 196.3 15.7 120 6-215 25-144 (192)
92 1mky_A Probable GTP-binding pr 99.9 1.9E-25 6.4E-30 220.3 18.0 297 11-361 2-366 (439)
93 1f6b_A SAR1; gtpases, N-termin 99.9 1.3E-25 4.5E-30 197.6 14.7 119 7-215 22-140 (198)
94 2fh5_B SR-beta, signal recogni 99.9 1.2E-25 4E-30 199.8 14.2 122 7-215 4-129 (214)
95 2h17_A ADP-ribosylation factor 99.9 1.6E-25 5.3E-30 193.9 13.9 120 6-215 17-136 (181)
96 1upt_A ARL1, ADP-ribosylation 99.9 4.3E-25 1.5E-29 188.3 16.2 70 145-215 53-122 (171)
97 1m2o_B GTP-binding protein SAR 99.9 4E-25 1.4E-29 193.2 15.9 119 7-215 20-138 (190)
98 2h57_A ADP-ribosylation factor 99.9 5.1E-25 1.7E-29 192.0 16.4 121 7-215 18-140 (190)
99 2wkq_A NPH1-1, RAS-related C3 99.9 5.6E-25 1.9E-29 208.2 17.2 174 8-348 153-328 (332)
100 2f9l_A RAB11B, member RAS onco 99.9 1.7E-24 6E-29 190.3 18.4 164 8-349 3-167 (199)
101 1ksh_A ARF-like protein 2; sma 99.9 6.2E-25 2.1E-29 190.5 14.8 118 8-215 16-133 (186)
102 3c5h_A Glucocorticoid receptor 99.9 5.1E-25 1.7E-29 201.8 12.8 138 6-215 15-212 (255)
103 2x77_A ADP-ribosylation factor 99.9 4.2E-25 1.4E-29 192.2 11.0 70 145-215 68-137 (189)
104 1moz_A ARL1, ADP-ribosylation 99.9 6.7E-25 2.3E-29 189.5 10.9 118 8-215 16-133 (183)
105 1oix_A RAS-related protein RAB 99.9 1.7E-23 5.7E-28 183.1 17.8 161 9-347 28-189 (191)
106 2wji_A Ferrous iron transport 99.9 9.2E-24 3.1E-28 180.1 15.3 63 145-215 52-122 (165)
107 3r7w_B Gtpase2, GTP-binding pr 99.9 2.1E-24 7E-29 202.3 10.7 113 145-347 48-171 (331)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 2.3E-23 7.9E-28 195.9 16.3 71 145-215 54-129 (307)
109 2lkc_A Translation initiation 99.9 8.9E-24 3E-28 181.5 10.5 117 6-215 4-121 (178)
110 3o47_A ADP-ribosylation factor 99.9 1E-23 3.5E-28 200.1 11.3 70 145-215 211-280 (329)
111 3lvq_E ARF-GAP with SH3 domain 99.9 7E-23 2.4E-27 205.0 14.3 70 145-215 368-437 (497)
112 2qu8_A Putative nucleolar GTP- 99.9 2.5E-22 8.6E-27 180.4 15.9 67 145-215 78-156 (228)
113 2gj8_A MNME, tRNA modification 99.9 4.2E-23 1.4E-27 177.4 10.4 68 145-215 54-129 (172)
114 2wjg_A FEOB, ferrous iron tran 99.9 3.3E-22 1.1E-26 173.4 14.5 63 145-215 56-126 (188)
115 2cxx_A Probable GTP-binding pr 99.9 1.9E-22 6.5E-27 174.9 12.4 70 145-215 46-136 (190)
116 2dyk_A GTP-binding protein; GT 99.9 6.9E-22 2.4E-26 166.6 14.1 65 145-215 51-122 (161)
117 1svi_A GTP-binding protein YSX 99.9 9.5E-22 3.3E-26 171.5 15.1 65 145-215 71-148 (195)
118 3dpu_A RAB family protein; roc 99.9 3.1E-22 1.1E-26 202.1 11.2 170 7-350 38-208 (535)
119 3pqc_A Probable GTP-binding pr 99.8 1.9E-20 6.4E-25 162.8 15.8 63 145-215 70-147 (195)
120 3a1s_A Iron(II) transport prot 99.8 1.2E-20 4E-25 173.0 14.1 105 145-349 54-166 (258)
121 3b1v_A Ferrous iron uptake tra 99.8 8.8E-21 3E-25 175.0 12.7 63 145-215 51-121 (272)
122 3iev_A GTP-binding protein ERA 99.8 1.5E-19 5.1E-24 169.9 17.6 65 145-214 61-135 (308)
123 3iby_A Ferrous iron transport 99.8 3.7E-20 1.3E-24 169.5 11.8 63 145-215 50-124 (256)
124 1nrj_B SR-beta, signal recogni 99.8 1.5E-20 5.1E-25 167.2 8.1 71 145-215 57-134 (218)
125 3i8s_A Ferrous iron transport 99.8 7.2E-20 2.5E-24 169.2 12.0 63 145-215 52-126 (274)
126 3k53_A Ferrous iron transport 99.8 2.7E-19 9.2E-24 165.1 13.9 106 145-349 52-165 (271)
127 4dhe_A Probable GTP-binding pr 99.8 2.7E-19 9.1E-24 159.5 12.8 65 145-215 81-158 (223)
128 3gee_A MNME, tRNA modification 99.8 3.9E-19 1.3E-23 176.0 12.3 67 145-215 283-357 (476)
129 1lnz_A SPO0B-associated GTP-bi 99.8 6E-19 2.1E-23 167.6 11.1 71 145-215 208-288 (342)
130 3sjy_A Translation initiation 99.8 3.2E-17 1.1E-21 159.6 19.9 68 144-215 76-143 (403)
131 3qq5_A Small GTP-binding prote 99.8 5.4E-19 1.9E-23 172.3 6.9 63 145-215 85-154 (423)
132 2e87_A Hypothetical protein PH 99.8 1.6E-17 5.4E-22 159.3 17.0 68 145-215 216-294 (357)
133 1wf3_A GTP-binding protein; GT 99.8 8.2E-18 2.8E-22 157.4 14.1 66 145-215 57-131 (301)
134 1xzp_A Probable tRNA modificat 99.7 6.5E-18 2.2E-22 167.4 12.5 63 145-215 293-364 (482)
135 3izy_P Translation initiation 99.7 1.6E-18 5.6E-23 173.2 6.5 65 145-215 54-118 (537)
136 3geh_A MNME, tRNA modification 99.7 2.1E-17 7.1E-22 163.0 11.3 63 145-215 274-344 (462)
137 3ohm_A Guanine nucleotide-bind 99.7 4E-17 1.4E-21 153.5 11.9 72 143-215 167-248 (327)
138 2ged_A SR-beta, signal recogni 99.7 2.5E-17 8.6E-22 143.2 9.8 71 145-215 93-170 (193)
139 1s0u_A EIF-2-gamma, translatio 99.7 2.9E-16 1E-20 153.1 16.5 64 144-215 82-149 (408)
140 2qtf_A Protein HFLX, GTP-bindi 99.7 5.1E-16 1.7E-20 148.8 16.8 68 145-215 228-306 (364)
141 2qag_A Septin-2, protein NEDD5 99.7 1.6E-17 5.5E-22 159.3 5.6 34 314-348 198-231 (361)
142 1wb1_A Translation elongation 99.7 5E-16 1.7E-20 154.4 16.1 62 145-215 75-139 (482)
143 1zo1_I IF2, translation initia 99.7 2.4E-17 8.3E-22 163.4 6.5 62 145-215 53-117 (501)
144 3lxx_A GTPase IMAP family memb 99.7 3.5E-16 1.2E-20 141.3 13.4 69 145-215 80-159 (239)
145 2ywe_A GTP-binding protein LEP 99.7 7.3E-16 2.5E-20 156.0 16.2 67 143-215 73-139 (600)
146 4fid_A G protein alpha subunit 99.7 1.9E-16 6.6E-21 149.4 11.2 72 143-215 161-242 (340)
147 3cb4_D GTP-binding protein LEP 99.7 4.5E-16 1.5E-20 157.8 14.5 67 143-215 71-137 (599)
148 3p26_A Elongation factor 1 alp 99.7 2.2E-16 7.5E-21 157.2 11.8 72 144-215 112-185 (483)
149 2xtp_A GTPase IMAP family memb 99.7 3.4E-16 1.2E-20 143.1 11.9 33 7-39 19-52 (260)
150 3tr5_A RF-3, peptide chain rel 99.7 2.2E-16 7.6E-21 158.2 11.0 65 145-215 84-148 (528)
151 1kk1_A EIF2gamma; initiation o 99.7 3.4E-15 1.2E-19 145.7 19.0 64 144-215 84-151 (410)
152 3j2k_7 ERF3, eukaryotic polype 99.6 1.3E-15 4.6E-20 149.7 14.8 69 145-215 97-169 (439)
153 1g7s_A Translation initiation 99.6 9.8E-16 3.3E-20 155.4 14.1 62 145-215 72-136 (594)
154 1jny_A EF-1-alpha, elongation 99.6 4.1E-16 1.4E-20 153.2 10.6 70 145-215 86-158 (435)
155 1ega_A Protein (GTP-binding pr 99.6 9.1E-16 3.1E-20 143.6 12.1 64 145-215 58-130 (301)
156 1u0l_A Probable GTPase ENGC; p 99.6 8.3E-17 2.8E-21 150.6 4.8 64 145-215 65-129 (301)
157 3t5d_A Septin-7; GTP-binding p 99.6 5.8E-16 2E-20 142.9 10.3 28 320-347 174-201 (274)
158 2aka_B Dynamin-1; fusion prote 99.6 3.8E-16 1.3E-20 145.5 8.7 66 145-215 127-206 (299)
159 1zun_B Sulfate adenylate trans 99.6 1.3E-15 4.4E-20 149.7 12.9 67 144-215 105-171 (434)
160 3lxw_A GTPase IMAP family memb 99.6 5.2E-15 1.8E-19 134.5 15.7 69 145-215 72-153 (247)
161 2c78_A Elongation factor TU-A; 99.6 2.4E-15 8.1E-20 146.5 13.3 65 145-215 77-142 (405)
162 2qnr_A Septin-2, protein NEDD5 99.6 5.7E-16 2E-20 144.9 8.2 53 295-348 158-212 (301)
163 1pui_A ENGB, probable GTP-bind 99.6 5.5E-15 1.9E-19 130.1 13.8 38 7-44 23-60 (210)
164 1d2e_A Elongation factor TU (E 99.6 2.6E-15 8.8E-20 145.9 12.3 65 145-215 68-133 (397)
165 2elf_A Protein translation elo 99.6 1.4E-14 4.7E-19 139.2 13.8 62 145-213 62-125 (370)
166 1r5b_A Eukaryotic peptide chai 99.6 5.9E-16 2E-20 153.4 4.3 70 144-215 122-195 (467)
167 3izq_1 HBS1P, elongation facto 99.6 4E-15 1.4E-19 151.7 8.9 71 144-215 246-319 (611)
168 2hjg_A GTP-binding protein ENG 99.6 9.8E-15 3.3E-19 143.5 11.3 65 145-215 225-300 (436)
169 1f60_A Elongation factor EEF1A 99.6 1.8E-15 6.2E-20 149.5 6.0 66 145-215 87-159 (458)
170 3def_A T7I23.11 protein; chlor 99.5 1.7E-14 5.7E-19 132.2 10.9 70 145-215 86-165 (262)
171 3mca_A HBS1, elongation factor 99.5 4.9E-15 1.7E-19 150.6 6.7 62 145-215 257-329 (592)
172 1cip_A Protein (guanine nucleo 99.5 1.4E-14 4.8E-19 138.0 8.4 115 222-348 192-342 (353)
173 2dy1_A Elongation factor G; tr 99.5 1.5E-13 5.1E-18 141.6 16.6 66 143-214 74-139 (665)
174 2xtz_A Guanine nucleotide-bind 99.5 1.9E-14 6.4E-19 137.1 8.8 115 222-348 182-343 (354)
175 3avx_A Elongation factor TS, e 99.5 4.2E-14 1.4E-18 150.1 12.2 65 145-215 361-426 (1289)
176 2hf9_A Probable hydrogenase ni 99.5 4E-14 1.4E-18 126.2 9.6 55 294-348 166-222 (226)
177 1dar_A EF-G, elongation factor 99.5 2.9E-13 9.8E-18 140.0 16.8 65 145-215 79-143 (691)
178 4dcu_A GTP-binding protein ENG 99.5 1.9E-13 6.6E-18 135.0 14.1 65 145-215 245-320 (456)
179 2rdo_7 EF-G, elongation factor 99.5 9.4E-13 3.2E-17 136.4 19.1 67 143-215 82-148 (704)
180 1azs_C GS-alpha; complex (lyas 99.5 6.5E-14 2.2E-18 135.1 9.2 114 223-348 217-383 (402)
181 2xex_A Elongation factor G; GT 99.5 9E-13 3.1E-17 136.4 18.3 65 145-215 77-141 (693)
182 2h5e_A Peptide chain release f 99.5 3.3E-13 1.1E-17 135.3 14.3 66 144-215 83-148 (529)
183 2j69_A Bacterial dynamin-like 99.5 3.6E-13 1.2E-17 139.3 14.6 66 145-215 176-244 (695)
184 1mky_A Probable GTP-binding pr 99.5 1E-12 3.6E-17 129.1 17.0 65 145-215 230-306 (439)
185 1h65_A Chloroplast outer envel 99.5 1.5E-13 5.1E-18 126.4 10.3 70 145-215 89-168 (270)
186 2qag_C Septin-7; cell cycle, c 99.5 4.2E-14 1.4E-18 137.5 6.5 52 296-347 171-224 (418)
187 1udx_A The GTP-binding protein 99.5 3.5E-13 1.2E-17 130.9 12.4 70 145-215 207-283 (416)
188 3t34_A Dynamin-related protein 99.4 1.4E-13 4.8E-18 131.9 8.8 67 145-215 138-217 (360)
189 1zcb_A G alpha I/13; GTP-bindi 99.4 1.6E-13 5.5E-18 131.2 7.7 115 222-348 200-351 (362)
190 1jwy_B Dynamin A GTPase domain 99.4 1.4E-12 4.7E-17 122.3 12.2 66 145-215 133-212 (315)
191 2x2e_A Dynamin-1; nitration, h 99.4 1.3E-13 4.6E-18 131.7 4.4 30 8-37 29-58 (353)
192 2wsm_A Hydrogenase expression/ 99.4 2.2E-12 7.7E-17 114.3 10.9 26 323-348 187-212 (221)
193 4a9a_A Ribosome-interacting GT 99.4 9.6E-12 3.3E-16 119.0 15.9 169 145-351 121-301 (376)
194 1wxq_A GTP-binding protein; st 99.3 1.9E-12 6.6E-17 125.3 9.6 52 144-195 72-141 (397)
195 1jal_A YCHF protein; nucleotid 99.3 3.7E-11 1.3E-15 114.3 15.3 49 145-193 68-133 (363)
196 1cip_A Protein (guanine nucleo 99.3 6E-12 2.1E-16 119.8 9.7 72 143-215 193-274 (353)
197 1n0u_A EF-2, elongation factor 99.3 7.8E-12 2.7E-16 131.9 10.6 67 143-215 98-164 (842)
198 3p32_A Probable GTPase RV1496/ 99.2 1E-10 3.4E-15 111.7 14.4 102 225-350 174-284 (355)
199 2qpt_A EH domain-containing pr 99.2 1.7E-11 6E-16 123.4 9.2 66 145-215 156-232 (550)
200 2dby_A GTP-binding protein; GD 99.2 5.7E-11 2E-15 113.6 11.8 52 292-343 201-255 (368)
201 1yrb_A ATP(GTP)binding protein 99.2 1.7E-10 5.7E-15 105.0 12.9 25 324-348 231-255 (262)
202 2www_A Methylmalonic aciduria 99.1 1.2E-10 4.1E-15 110.9 9.6 27 323-349 252-278 (349)
203 2yv5_A YJEQ protein; hydrolase 99.1 1.2E-10 4E-15 108.8 8.8 99 231-345 64-164 (302)
204 2xtz_A Guanine nucleotide-bind 99.1 3.1E-11 1.1E-15 114.9 4.2 72 143-215 183-264 (354)
205 1azs_C GS-alpha; complex (lyas 99.1 1.5E-10 5.1E-15 111.6 7.0 72 143-215 217-298 (402)
206 2p67_A LAO/AO transport system 99.0 4.9E-10 1.7E-14 106.4 8.5 27 323-349 234-260 (341)
207 4dkx_A RAS-related protein RAB 99.0 3E-10 1E-14 100.8 6.0 67 224-303 63-129 (216)
208 3vqt_A RF-3, peptide chain rel 98.9 9.4E-09 3.2E-13 103.4 14.8 66 144-215 101-166 (548)
209 3zvr_A Dynamin-1; hydrolase, D 98.9 6.2E-09 2.1E-13 107.5 11.7 108 224-347 151-275 (772)
210 3j25_A Tetracycline resistance 98.8 8.7E-09 3E-13 105.6 10.8 66 144-215 68-133 (638)
211 1zcb_A G alpha I/13; GTP-bindi 98.8 1.7E-09 5.9E-14 103.2 5.1 72 143-215 201-282 (362)
212 2ohf_A Protein OLA1, GTP-bindi 98.8 4.8E-09 1.7E-13 100.7 6.8 39 145-183 88-133 (396)
213 4fid_A G protein alpha subunit 98.8 6.9E-09 2.4E-13 97.8 6.0 105 222-348 160-274 (340)
214 2qm8_A GTPase/ATPase; G protei 98.7 1.7E-08 5.8E-13 95.5 8.4 27 323-349 234-260 (337)
215 4fn5_A EF-G 1, elongation fact 98.7 2.8E-07 9.7E-12 95.6 16.5 67 143-215 85-151 (709)
216 1fzq_A ADP-ribosylation factor 98.7 3.1E-08 1.1E-12 84.7 6.6 112 225-348 62-176 (181)
217 1r8s_A ADP-ribosylation factor 98.7 3.1E-08 1.1E-12 82.6 6.4 112 225-348 46-160 (164)
218 1f6b_A SAR1; gtpases, N-termin 98.6 4.8E-08 1.6E-12 84.9 6.7 111 223-347 69-196 (198)
219 4bas_A ADP-ribosylation factor 98.6 4.7E-08 1.6E-12 84.3 6.3 118 222-351 62-190 (199)
220 3l82_B F-box only protein 4; T 98.6 4.6E-08 1.6E-12 85.1 5.7 104 231-348 110-221 (227)
221 1upt_A ARL1, ADP-ribosylation 98.6 9.7E-08 3.3E-12 80.0 7.4 112 225-348 53-167 (171)
222 1zj6_A ADP-ribosylation factor 98.6 6.1E-08 2.1E-12 83.0 6.2 115 222-348 59-176 (187)
223 1ksh_A ARF-like protein 2; sma 98.6 5.9E-08 2E-12 82.9 5.8 114 222-348 61-178 (186)
224 2b6h_A ADP-ribosylation factor 98.6 6.5E-08 2.2E-12 83.6 5.8 115 222-348 72-189 (192)
225 3cbq_A GTP-binding protein REM 98.6 6.8E-08 2.3E-12 83.8 5.9 68 224-303 73-141 (195)
226 2h17_A ADP-ribosylation factor 98.5 8.5E-08 2.9E-12 81.8 6.3 113 222-346 64-179 (181)
227 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 4.2E-07 1.4E-11 87.3 11.6 27 9-35 19-45 (392)
228 1m2o_B GTP-binding protein SAR 98.5 9.7E-08 3.3E-12 82.3 6.6 110 223-346 67-188 (190)
229 3ohm_A Guanine nucleotide-bind 98.5 8.7E-08 3E-12 89.9 6.5 115 222-348 166-316 (327)
230 3q72_A GTP-binding protein RAD 98.5 6.6E-08 2.3E-12 80.8 5.1 68 224-303 50-117 (166)
231 3t5g_A GTP-binding protein RHE 98.5 8.9E-08 3.1E-12 81.3 5.7 68 224-303 55-122 (181)
232 2h57_A ADP-ribosylation factor 98.5 1.6E-07 5.3E-12 80.7 7.0 113 223-349 67-186 (190)
233 3kkq_A RAS-related protein M-R 98.5 8.2E-08 2.8E-12 81.7 5.2 67 225-303 68-134 (183)
234 2x77_A ADP-ribosylation factor 98.5 1.2E-07 4.1E-12 81.3 6.3 112 225-348 68-182 (189)
235 1zd9_A ADP-ribosylation factor 98.5 8.6E-08 2.9E-12 82.3 5.1 115 222-348 66-183 (188)
236 1c1y_A RAS-related protein RAP 98.5 1.2E-07 4.1E-12 79.1 5.8 113 224-348 52-165 (167)
237 3q3j_B RHO-related GTP-binding 98.5 1.1E-07 3.7E-12 83.8 5.4 71 224-308 76-147 (214)
238 1ek0_A Protein (GTP-binding pr 98.5 1.5E-07 5.3E-12 78.5 6.1 72 224-308 53-124 (170)
239 3q85_A GTP-binding protein REM 98.5 1.1E-07 3.7E-12 79.7 5.1 68 224-303 52-120 (169)
240 3oes_A GTPase rhebl1; small GT 98.5 1.3E-07 4.3E-12 82.2 5.3 68 224-303 73-140 (201)
241 1u8z_A RAS-related protein RAL 98.5 1.6E-07 5.5E-12 78.2 5.7 69 224-304 53-121 (168)
242 2hup_A RAS-related protein RAB 98.5 1.3E-07 4.6E-12 82.2 5.4 67 224-303 79-145 (201)
243 2yc2_C IFT27, small RAB-relate 98.5 1E-07 3.4E-12 82.8 4.6 69 224-304 74-144 (208)
244 3h2y_A GTPase family protein; 98.5 1.6E-07 5.3E-12 89.9 6.3 96 233-347 56-157 (368)
245 1moz_A ARL1, ADP-ribosylation 98.5 1.5E-07 5E-12 80.0 5.5 114 223-348 62-178 (183)
246 2g3y_A GTP-binding protein GEM 98.5 1.3E-07 4.3E-12 83.4 5.2 67 225-303 89-156 (211)
247 3t1o_A Gliding protein MGLA; G 98.4 1.6E-07 5.4E-12 80.6 5.5 67 224-304 75-147 (198)
248 1kao_A RAP2A; GTP-binding prot 98.4 2.2E-07 7.5E-12 77.2 6.2 68 224-303 52-119 (167)
249 2ew1_A RAS-related protein RAB 98.4 2.3E-07 8E-12 80.9 6.5 67 224-303 76-142 (201)
250 1m7b_A RND3/RHOE small GTP-bin 98.4 1.5E-07 5.3E-12 80.3 5.2 71 224-308 56-127 (184)
251 3r7w_B Gtpase2, GTP-binding pr 98.4 1.8E-07 6E-12 87.5 5.7 71 224-307 47-121 (331)
252 2atx_A Small GTP binding prote 98.4 2.2E-07 7.5E-12 79.9 5.9 71 224-308 67-138 (194)
253 2fu5_C RAS-related protein RAB 98.4 1.9E-07 6.4E-12 79.5 5.3 68 224-304 58-125 (183)
254 2p5s_A RAS and EF-hand domain 98.4 2.2E-07 7.4E-12 80.6 5.8 71 224-307 78-148 (199)
255 3bwd_D RAC-like GTP-binding pr 98.4 2E-07 7E-12 79.0 5.4 73 224-310 57-130 (182)
256 2q3h_A RAS homolog gene family 98.4 2.3E-07 8E-12 80.2 5.9 72 224-309 69-141 (201)
257 2fn4_A P23, RAS-related protei 98.4 2.2E-07 7.6E-12 78.5 5.6 68 224-303 58-125 (181)
258 1z06_A RAS-related protein RAB 98.4 1.6E-07 5.5E-12 80.6 4.8 68 224-303 70-138 (189)
259 3c5c_A RAS-like protein 12; GD 98.4 1.7E-07 5.8E-12 80.5 4.9 67 224-303 70-138 (187)
260 2a9k_A RAS-related protein RAL 98.4 2.6E-07 9.1E-12 78.5 6.0 69 224-304 67-135 (187)
261 3ihw_A Centg3; RAS, centaurin, 98.4 1.6E-07 5.4E-12 80.6 4.5 64 224-304 68-131 (184)
262 4dsu_A GTPase KRAS, isoform 2B 98.4 2.5E-07 8.4E-12 78.9 5.7 68 225-304 54-121 (189)
263 3bc1_A RAS-related protein RAB 98.4 3E-07 1E-11 78.6 6.1 70 223-304 70-139 (195)
264 1ky3_A GTP-binding protein YPT 98.4 2.3E-07 7.7E-12 78.5 5.3 114 224-349 59-177 (182)
265 2j0v_A RAC-like GTP-binding pr 98.4 1.9E-07 6.6E-12 81.6 5.0 73 224-310 58-131 (212)
266 2bov_A RAla, RAS-related prote 98.4 3E-07 1E-11 79.6 6.1 69 224-304 63-131 (206)
267 3llu_A RAS-related GTP-binding 98.4 3.5E-07 1.2E-11 79.0 6.5 71 224-308 70-145 (196)
268 2g6b_A RAS-related protein RAB 98.4 2.8E-07 9.6E-12 78.0 5.7 68 224-304 61-128 (180)
269 2nzj_A GTP-binding protein REM 98.4 2.6E-07 8.8E-12 77.7 5.4 69 224-304 53-123 (175)
270 1gwn_A RHO-related GTP-binding 98.4 2.3E-07 7.8E-12 81.2 5.2 70 224-307 77-147 (205)
271 3gj0_A GTP-binding nuclear pro 98.4 2E-07 7E-12 82.1 4.7 110 223-348 64-173 (221)
272 1x3s_A RAS-related protein RAB 98.4 2E-07 6.8E-12 80.0 4.4 70 223-304 64-133 (195)
273 2hxs_A RAB-26, RAS-related pro 98.4 3.4E-07 1.1E-11 77.3 5.6 70 223-303 56-126 (178)
274 3lvq_E ARF-GAP with SH3 domain 98.4 4.8E-07 1.6E-11 90.0 7.4 120 224-355 367-489 (497)
275 3l2o_B F-box only protein 4; s 98.4 5.3E-07 1.8E-11 82.2 7.0 105 231-348 195-306 (312)
276 2il1_A RAB12; G-protein, GDP, 98.4 3.9E-07 1.3E-11 78.5 5.8 112 224-348 76-188 (192)
277 1r2q_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 75.9 5.8 69 223-304 55-123 (170)
278 1wms_A RAB-9, RAB9, RAS-relate 98.4 5.1E-07 1.7E-11 76.1 6.4 112 224-348 57-172 (177)
279 2cjw_A GTP-binding protein GEM 98.4 3.8E-07 1.3E-11 78.8 5.6 67 225-303 58-125 (192)
280 2bme_A RAB4A, RAS-related prot 98.4 4E-07 1.4E-11 77.5 5.7 68 224-304 60-127 (186)
281 3o47_A ADP-ribosylation factor 98.4 3.9E-07 1.3E-11 85.9 6.1 112 225-348 211-325 (329)
282 1mh1_A RAC1; GTP-binding, GTPa 98.4 3.1E-07 1E-11 78.1 5.0 71 224-308 54-125 (186)
283 3tkl_A RAS-related protein RAB 98.3 4.6E-07 1.6E-11 77.8 6.0 68 224-304 66-133 (196)
284 3cpj_B GTP-binding protein YPT 98.3 3.6E-07 1.2E-11 80.7 5.2 67 224-303 63-129 (223)
285 2ce2_X GTPase HRAS; signaling 98.3 5.7E-07 2E-11 74.5 6.2 70 224-305 52-121 (166)
286 2gf9_A RAS-related protein RAB 98.3 5.6E-07 1.9E-11 77.1 6.2 68 224-304 72-139 (189)
287 2atv_A RERG, RAS-like estrogen 98.3 5.2E-07 1.8E-11 77.8 6.0 68 223-303 76-143 (196)
288 2fh5_B SR-beta, signal recogni 98.3 1.5E-07 5.2E-12 82.4 2.6 103 223-337 54-197 (214)
289 3reg_A RHO-like small GTPase; 98.3 4E-07 1.4E-11 78.4 5.2 68 224-305 72-140 (194)
290 1z08_A RAS-related protein RAB 98.3 5.2E-07 1.8E-11 75.4 5.8 67 224-303 56-122 (170)
291 1zbd_A Rabphilin-3A; G protein 98.3 5.3E-07 1.8E-11 78.1 6.0 69 223-304 57-125 (203)
292 4gzl_A RAS-related C3 botulinu 98.3 4.3E-07 1.5E-11 79.1 5.1 72 225-310 80-152 (204)
293 2fg5_A RAB-22B, RAS-related pr 98.3 5.8E-07 2E-11 77.3 5.9 68 223-303 72-139 (192)
294 2bcg_Y Protein YP2, GTP-bindin 98.3 5.2E-07 1.8E-11 78.4 5.6 68 224-304 58-125 (206)
295 2a5j_A RAS-related protein RAB 98.3 4.4E-07 1.5E-11 77.9 5.1 67 224-303 71-137 (191)
296 3tw8_B RAS-related protein RAB 98.3 4.5E-07 1.5E-11 76.6 5.0 67 224-304 59-125 (181)
297 3con_A GTPase NRAS; structural 98.3 5.8E-07 2E-11 76.9 5.6 70 224-305 70-139 (190)
298 2efe_B Small GTP-binding prote 98.3 6.2E-07 2.1E-11 75.9 5.7 68 224-304 62-129 (181)
299 1z0j_A RAB-22, RAS-related pro 98.3 7.7E-07 2.6E-11 74.3 6.2 69 223-304 55-123 (170)
300 3l0i_B RAS-related protein RAB 98.3 3.6E-07 1.2E-11 79.2 4.1 69 224-305 83-151 (199)
301 2iwr_A Centaurin gamma 1; ANK 98.3 5.6E-07 1.9E-11 76.1 5.3 64 224-304 55-120 (178)
302 3ec1_A YQEH GTPase; atnos1, at 98.3 6.5E-07 2.2E-11 85.7 6.1 98 232-348 57-160 (369)
303 2oil_A CATX-8, RAS-related pro 98.3 8.6E-07 2.9E-11 76.1 6.3 68 224-304 75-142 (193)
304 1z0f_A RAB14, member RAS oncog 98.3 6.1E-07 2.1E-11 75.6 5.3 67 224-303 65-131 (179)
305 3dz8_A RAS-related protein RAB 98.3 3E-07 1E-11 79.0 3.3 68 223-303 72-139 (191)
306 1g16_A RAS-related protein SEC 98.3 5.7E-07 1.9E-11 75.1 4.9 68 224-304 53-120 (170)
307 1z2a_A RAS-related protein RAB 98.3 5.6E-07 1.9E-11 75.0 4.6 67 224-304 55-121 (168)
308 2wkq_A NPH1-1, RAS-related C3 98.3 1.7E-06 5.7E-11 80.8 8.3 70 225-308 205-275 (332)
309 2erx_A GTP-binding protein DI- 98.3 7.5E-07 2.6E-11 74.4 5.3 69 224-304 52-121 (172)
310 2j1l_A RHO-related GTP-binding 98.3 5.6E-07 1.9E-11 79.0 4.6 72 224-309 83-155 (214)
311 4djt_A GTP-binding nuclear pro 98.3 6.1E-07 2.1E-11 78.7 4.9 67 224-303 62-128 (218)
312 2y8e_A RAB-protein 6, GH09086P 98.3 7.7E-07 2.6E-11 75.0 5.2 68 224-304 64-131 (179)
313 2gco_A H9, RHO-related GTP-bin 98.3 8.5E-07 2.9E-11 76.9 5.4 72 224-309 74-146 (201)
314 2zej_A Dardarin, leucine-rich 98.2 3.4E-07 1.2E-11 78.3 2.6 113 223-349 56-177 (184)
315 3th5_A RAS-related C3 botulinu 97.6 1.4E-07 4.7E-12 82.1 0.0 71 224-308 79-150 (204)
316 1vg8_A RAS-related protein RAB 98.2 8.4E-07 2.9E-11 76.9 4.8 113 224-349 58-174 (207)
317 2ged_A SR-beta, signal recogni 98.2 9.7E-07 3.3E-11 75.7 5.2 75 224-310 92-174 (193)
318 2o52_A RAS-related protein RAB 98.2 4.5E-07 1.6E-11 78.7 2.9 69 223-304 74-142 (200)
319 2fv8_A H6, RHO-related GTP-bin 98.2 1.4E-06 5E-11 75.8 6.1 72 224-309 74-146 (207)
320 2gf0_A GTP-binding protein DI- 98.2 8.1E-07 2.8E-11 76.4 4.3 69 224-304 57-126 (199)
321 3cph_A RAS-related protein SEC 98.2 1.1E-06 3.9E-11 76.5 5.0 68 224-304 70-137 (213)
322 2f7s_A C25KG, RAS-related prot 98.2 2.8E-07 9.5E-12 80.9 1.0 69 223-303 84-152 (217)
323 3c5h_A Glucocorticoid receptor 98.2 8.7E-07 3E-11 80.3 4.3 105 230-348 125-253 (255)
324 2j37_W Signal recognition part 98.1 1.1E-05 3.9E-10 79.8 11.3 101 224-347 185-310 (504)
325 3r7w_A Gtpase1, GTP-binding pr 98.1 1.3E-06 4.5E-11 81.4 4.3 111 224-347 53-178 (307)
326 1g7s_A Translation initiation 98.1 1.3E-06 4.5E-11 88.5 3.5 96 224-346 71-166 (594)
327 1u0l_A Probable GTPase ENGC; p 98.0 4.5E-06 1.5E-10 77.5 5.6 103 224-346 64-169 (301)
328 3clv_A RAB5 protein, putative; 98.0 5.8E-06 2E-10 70.9 5.1 66 223-303 93-158 (208)
329 1nrj_B SR-beta, signal recogni 98.0 6.9E-06 2.4E-10 71.8 5.2 101 224-336 56-170 (218)
330 2qu8_A Putative nucleolar GTP- 97.9 1.4E-05 4.9E-10 70.6 6.6 112 224-350 77-205 (228)
331 1puj_A YLQF, conserved hypothe 97.9 5.9E-06 2E-10 76.0 4.0 26 8-33 118-143 (282)
332 3cnl_A YLQF, putative uncharac 97.9 5.5E-06 1.9E-10 75.3 3.1 25 11-35 100-124 (262)
333 2h5e_A Peptide chain release f 97.8 1E-05 3.6E-10 80.9 4.3 105 223-346 82-191 (529)
334 2gj8_A MNME, tRNA modification 97.8 1.7E-05 5.9E-10 66.9 4.8 105 224-349 53-165 (172)
335 3dm5_A SRP54, signal recogniti 97.7 0.00021 7E-09 69.5 12.1 88 226-338 186-279 (443)
336 2qag_B Septin-6, protein NEDD5 97.7 0.00036 1.2E-08 67.4 13.8 25 10-34 42-66 (427)
337 2yv5_A YJEQ protein; hydrolase 97.7 2.2E-05 7.6E-10 72.8 5.0 59 152-215 65-124 (302)
338 3ec1_A YQEH GTPase; atnos1, at 97.7 3.1E-05 1.1E-09 73.9 5.9 111 10-120 162-287 (369)
339 1puj_A YLQF, conserved hypothe 97.7 7.6E-05 2.6E-09 68.5 7.6 85 242-349 19-105 (282)
340 2lkc_A Translation initiation 97.7 3.1E-05 1.1E-09 64.9 4.4 115 223-354 55-175 (178)
341 2f9l_A RAB11B, member RAS onco 97.6 5E-05 1.7E-09 65.4 5.3 66 225-303 56-121 (199)
342 1svi_A GTP-binding protein YSX 97.6 5.6E-05 1.9E-09 64.5 5.4 107 225-348 71-193 (195)
343 1f5n_A Interferon-induced guan 97.6 7.5E-05 2.6E-09 75.3 6.4 28 7-34 35-62 (592)
344 1oix_A RAS-related protein RAB 97.6 8.8E-05 3E-09 63.6 5.8 66 225-303 80-145 (191)
345 1n0u_A EF-2, elongation factor 97.5 9.6E-05 3.3E-09 78.0 6.3 66 224-306 99-164 (842)
346 1bif_A 6-phosphofructo-2-kinas 97.5 6.4E-05 2.2E-09 74.1 4.7 50 145-195 89-148 (469)
347 2cxx_A Probable GTP-binding pr 97.5 1.9E-05 6.4E-10 67.1 0.7 109 225-348 46-182 (190)
348 3h2y_A GTPase family protein; 97.5 0.00012 4.2E-09 69.7 6.4 110 11-120 161-286 (368)
349 1tq4_A IIGP1, interferon-induc 97.5 0.0035 1.2E-07 60.4 16.3 24 10-33 69-92 (413)
350 3p26_A Elongation factor 1 alp 97.5 8.7E-05 3E-09 73.4 5.1 107 222-339 110-227 (483)
351 3sop_A Neuronal-specific septi 97.5 0.0004 1.4E-08 63.2 9.2 25 10-34 2-26 (270)
352 3gee_A MNME, tRNA modification 97.4 0.0001 3.5E-09 72.7 5.2 109 223-349 281-397 (476)
353 2wji_A Ferrous iron transport 97.4 0.0002 7E-09 59.5 6.2 104 225-348 52-163 (165)
354 3kl4_A SRP54, signal recogniti 97.4 0.0019 6.3E-08 62.7 13.7 23 9-31 96-118 (433)
355 2v3c_C SRP54, signal recogniti 97.4 0.0006 2.1E-08 66.3 10.3 22 10-31 99-120 (432)
356 3def_A T7I23.11 protein; chlor 97.3 0.00019 6.6E-09 64.9 5.2 72 224-307 85-166 (262)
357 3tr5_A RF-3, peptide chain rel 97.3 0.00042 1.4E-08 69.2 8.1 87 223-328 82-168 (528)
358 2dyk_A GTP-binding protein; GT 97.2 0.00029 9.9E-09 57.8 4.8 102 224-347 50-159 (161)
359 3iby_A Ferrous iron transport 97.2 0.00013 4.5E-09 65.9 2.8 105 223-347 48-164 (256)
360 3iev_A GTP-binding protein ERA 97.2 0.00032 1.1E-08 65.1 5.5 109 225-349 61-181 (308)
361 1jny_A EF-1-alpha, elongation 97.2 0.00017 5.8E-09 70.4 3.4 109 222-342 83-205 (435)
362 3sjy_A Translation initiation 97.2 0.00074 2.5E-08 65.1 7.8 113 223-350 75-192 (403)
363 2xex_A Elongation factor G; GT 97.2 0.00013 4.5E-09 75.3 2.4 68 223-307 75-142 (693)
364 1j8m_F SRP54, signal recogniti 97.1 0.0032 1.1E-07 58.0 11.5 91 225-340 183-281 (297)
365 1h65_A Chloroplast outer envel 97.1 0.00077 2.6E-08 61.1 6.9 72 224-308 88-170 (270)
366 3dpu_A RAB family protein; roc 97.1 0.00044 1.5E-08 69.2 5.5 66 222-304 97-162 (535)
367 3izy_P Translation initiation 97.1 0.00039 1.3E-08 69.4 4.9 112 224-352 53-170 (537)
368 4dhe_A Probable GTP-binding pr 97.1 0.00047 1.6E-08 60.1 5.0 109 224-349 80-210 (223)
369 1wf3_A GTP-binding protein; GT 97.0 0.00071 2.4E-08 62.6 6.1 106 224-348 56-171 (301)
370 3i8s_A Ferrous iron transport 97.0 0.00048 1.6E-08 62.8 4.8 106 223-348 50-167 (274)
371 3l82_B F-box only protein 4; T 97.0 0.00054 1.9E-08 59.6 4.5 106 149-269 108-217 (227)
372 1r5b_A Eukaryotic peptide chai 97.0 0.00028 9.5E-09 69.5 3.1 107 223-341 121-243 (467)
373 3cb4_D GTP-binding protein LEP 97.0 0.0006 2.1E-08 69.0 5.5 107 224-349 72-181 (599)
374 1xzp_A Probable tRNA modificat 97.0 0.00084 2.9E-08 66.2 6.3 105 223-349 291-404 (482)
375 2ywe_A GTP-binding protein LEP 97.0 0.00067 2.3E-08 68.6 5.7 107 224-349 74-183 (600)
376 2c78_A Elongation factor TU-A; 97.0 0.0014 4.7E-08 63.2 7.5 110 223-348 75-210 (405)
377 1zo1_I IF2, translation initia 97.0 0.00058 2E-08 67.5 4.9 109 223-348 51-165 (501)
378 3izq_1 HBS1P, elongation facto 97.0 0.00071 2.4E-08 68.7 5.6 108 221-340 243-362 (611)
379 2wjg_A FEOB, ferrous iron tran 96.9 0.001 3.4E-08 56.1 5.5 106 225-350 56-169 (188)
380 1dar_A EF-G, elongation factor 96.8 0.0012 4.1E-08 68.1 6.0 69 223-308 77-145 (691)
381 1d2e_A Elongation factor TU (E 96.8 0.0015 5E-08 62.9 5.9 111 223-349 66-194 (397)
382 1zun_B Sulfate adenylate trans 96.7 0.0016 5.6E-08 63.3 6.1 103 223-341 104-215 (434)
383 3cnl_A YLQF, putative uncharac 96.7 0.00094 3.2E-08 60.5 3.6 82 241-346 16-97 (262)
384 3b1v_A Ferrous iron uptake tra 96.7 0.0021 7.3E-08 58.4 6.0 105 224-348 50-162 (272)
385 1f60_A Elongation factor EEF1A 96.6 0.001 3.4E-08 65.3 3.8 102 223-340 85-202 (458)
386 1lnz_A SPO0B-associated GTP-bi 96.6 0.0016 5.5E-08 61.3 5.0 109 225-349 208-329 (342)
387 1t9h_A YLOQ, probable GTPase E 96.6 0.00075 2.6E-08 62.5 2.6 88 238-342 78-169 (307)
388 3j2k_7 ERF3, eukaryotic polype 96.6 0.00087 3E-08 65.4 3.2 109 222-342 94-217 (439)
389 2rdo_7 EF-G, elongation factor 96.5 0.0046 1.6E-07 63.9 7.6 68 223-307 82-149 (704)
390 3a1s_A Iron(II) transport prot 96.5 0.0025 8.4E-08 57.5 4.9 63 223-304 52-122 (258)
391 3l2o_B F-box only protein 4; s 96.4 0.0019 6.4E-08 59.0 3.6 106 150-270 194-303 (312)
392 3pqc_A Probable GTP-binding pr 96.2 0.003 1E-07 53.3 3.9 107 225-348 70-192 (195)
393 3avx_A Elongation factor TS, e 96.2 0.0057 2E-07 65.8 6.5 110 223-348 359-484 (1289)
394 2e87_A Hypothetical protein PH 96.2 0.0098 3.3E-07 56.1 7.4 109 225-349 216-335 (357)
395 3mca_A HBS1, elongation factor 96.1 0.00056 1.9E-08 69.3 -1.4 110 223-346 255-393 (592)
396 2qpt_A EH domain-containing pr 96.1 0.0047 1.6E-07 61.9 5.4 72 224-311 155-237 (550)
397 3qq5_A Small GTP-binding prote 96.1 0.0054 1.8E-07 59.3 5.5 104 224-348 84-194 (423)
398 4dzz_A Plasmid partitioning pr 96.1 0.072 2.5E-06 45.3 12.2 66 145-214 78-143 (206)
399 3lxw_A GTPase IMAP family memb 96.0 0.0071 2.4E-07 54.0 5.5 114 223-349 70-207 (247)
400 1ye8_A Protein THEP1, hypothet 96.0 0.004 1.4E-07 52.8 3.3 22 12-33 2-23 (178)
401 1ukz_A Uridylate kinase; trans 95.9 0.006 2.1E-07 52.3 4.3 31 1-31 6-36 (203)
402 3geh_A MNME, tRNA modification 95.9 0.0036 1.2E-07 61.4 3.1 106 223-351 272-385 (462)
403 1ex7_A Guanylate kinase; subst 95.9 0.0031 1.1E-07 53.9 2.3 20 13-32 4-23 (186)
404 2qtf_A Protein HFLX, GTP-bindi 95.9 0.0087 3E-07 56.7 5.6 116 223-352 226-356 (364)
405 1kk1_A EIF2gamma; initiation o 95.9 0.012 4.1E-07 56.6 6.6 112 223-350 83-200 (410)
406 1kgd_A CASK, peripheral plasma 95.8 0.0045 1.6E-07 52.3 3.1 21 12-32 7-27 (180)
407 2rcn_A Probable GTPase ENGC; Y 95.8 0.042 1.4E-06 51.8 9.9 82 244-343 128-212 (358)
408 3szr_A Interferon-induced GTP- 95.8 0.04 1.4E-06 55.9 10.3 22 12-33 47-68 (608)
409 3k53_A Ferrous iron transport 95.8 0.011 3.7E-07 53.5 5.5 64 224-305 51-122 (271)
410 3ney_A 55 kDa erythrocyte memb 95.7 0.007 2.4E-07 52.2 3.7 23 10-32 19-41 (197)
411 4eun_A Thermoresistant glucoki 95.7 0.0064 2.2E-07 52.2 3.5 25 7-31 26-50 (200)
412 2aka_B Dynamin-1; fusion prote 95.6 0.0097 3.3E-07 54.2 4.7 113 223-351 125-254 (299)
413 1lvg_A Guanylate kinase, GMP k 95.6 0.0061 2.1E-07 52.4 3.1 21 12-32 6-26 (198)
414 2j69_A Bacterial dynamin-like 95.6 0.0081 2.8E-07 61.9 4.4 109 224-348 175-323 (695)
415 3asz_A Uridine kinase; cytidin 95.5 0.0078 2.7E-07 51.9 3.6 26 7-32 3-28 (211)
416 3lxx_A GTPase IMAP family memb 95.5 0.0062 2.1E-07 53.8 2.8 112 224-349 79-213 (239)
417 2ffh_A Protein (FFH); SRP54, s 95.4 0.19 6.4E-06 48.5 13.0 22 10-31 98-119 (425)
418 2rcn_A Probable GTPase ENGC; Y 95.3 0.0092 3.2E-07 56.3 3.5 22 12-33 217-238 (358)
419 3a00_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 50.6 3.0 20 13-32 4-23 (186)
420 3tr0_A Guanylate kinase, GMP k 95.2 0.0098 3.3E-07 50.9 3.1 22 12-33 9-30 (205)
421 1wb1_A Translation elongation 95.2 0.0087 3E-07 58.9 3.1 112 223-351 73-190 (482)
422 1s96_A Guanylate kinase, GMP k 95.2 0.011 3.6E-07 51.9 3.1 22 12-33 18-39 (219)
423 2xxa_A Signal recognition part 95.1 0.29 1E-05 47.3 13.6 23 9-31 99-121 (433)
424 3c8u_A Fructokinase; YP_612366 95.1 0.014 4.8E-07 50.4 3.8 24 8-31 20-43 (208)
425 4gp7_A Metallophosphoesterase; 95.1 0.0098 3.3E-07 49.8 2.7 20 12-31 11-30 (171)
426 2j41_A Guanylate kinase; GMP, 95.1 0.013 4.5E-07 50.1 3.6 24 10-33 6-29 (207)
427 3tau_A Guanylate kinase, GMP k 95.1 0.014 4.7E-07 50.5 3.7 23 11-33 9-31 (208)
428 1z6g_A Guanylate kinase; struc 95.0 0.012 4E-07 51.4 3.1 21 12-32 25-45 (218)
429 1s0u_A EIF-2-gamma, translatio 95.0 0.019 6.4E-07 55.2 4.7 113 223-350 81-198 (408)
430 1zp6_A Hypothetical protein AT 95.0 0.016 5.3E-07 49.0 3.7 24 10-33 9-32 (191)
431 1znw_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 50.8 3.1 21 12-32 22-42 (207)
432 1nn5_A Similar to deoxythymidy 95.0 0.014 4.7E-07 50.3 3.4 27 5-31 4-30 (215)
433 1t9h_A YLOQ, probable GTPase E 95.0 0.0047 1.6E-07 57.1 0.3 22 11-32 174-195 (307)
434 1y63_A LMAJ004144AAA protein; 95.0 0.017 5.7E-07 48.8 3.8 26 7-32 7-32 (184)
435 3q5d_A Atlastin-1; G protein, 94.9 0.025 8.7E-07 54.9 5.3 27 7-33 64-90 (447)
436 2qor_A Guanylate kinase; phosp 94.9 0.014 4.7E-07 50.3 3.1 22 11-32 13-34 (204)
437 3t34_A Dynamin-related protein 94.9 0.029 9.8E-07 52.9 5.5 107 224-345 137-256 (360)
438 1qf9_A UMP/CMP kinase, protein 94.9 0.02 6.9E-07 48.2 4.0 22 10-31 6-27 (194)
439 3tif_A Uncharacterized ABC tra 94.8 0.016 5.5E-07 51.3 3.3 20 12-31 33-52 (235)
440 1ak2_A Adenylate kinase isoenz 94.8 0.018 6.1E-07 50.7 3.6 25 7-31 13-37 (233)
441 3kb2_A SPBC2 prophage-derived 94.7 0.017 5.9E-07 47.7 3.2 20 12-31 3-22 (173)
442 1cke_A CK, MSSA, protein (cyti 94.7 0.019 6.5E-07 49.9 3.6 22 11-32 6-27 (227)
443 1jwy_B Dynamin A GTPase domain 94.7 0.024 8.4E-07 52.0 4.5 111 223-349 131-261 (315)
444 1kag_A SKI, shikimate kinase I 94.7 0.017 5.9E-07 47.9 3.1 21 12-32 6-26 (173)
445 1knq_A Gluconate kinase; ALFA/ 94.7 0.024 8.3E-07 47.1 4.0 22 10-31 8-29 (175)
446 3lw7_A Adenylate kinase relate 94.7 0.018 6E-07 47.5 3.1 19 12-30 3-21 (179)
447 3fb4_A Adenylate kinase; psych 94.6 0.018 6.1E-07 49.8 3.2 21 11-31 1-21 (216)
448 2cdn_A Adenylate kinase; phosp 94.6 0.023 7.9E-07 48.5 3.8 26 7-32 17-42 (201)
449 3t61_A Gluconokinase; PSI-biol 94.6 0.018 6.2E-07 49.3 3.1 22 11-32 19-40 (202)
450 3dl0_A Adenylate kinase; phosp 94.6 0.019 6.4E-07 49.7 3.2 21 11-31 1-21 (216)
451 1ly1_A Polynucleotide kinase; 94.6 0.022 7.7E-07 47.3 3.6 22 11-32 3-24 (181)
452 2pcj_A ABC transporter, lipopr 94.5 0.02 6.9E-07 50.3 3.3 20 12-31 32-51 (224)
453 2bbw_A Adenylate kinase 4, AK4 94.5 0.02 7E-07 50.7 3.3 22 10-31 27-48 (246)
454 3trf_A Shikimate kinase, SK; a 94.5 0.021 7.2E-07 47.9 3.3 21 11-31 6-26 (185)
455 1kht_A Adenylate kinase; phosp 94.5 0.023 8E-07 47.7 3.5 21 11-31 4-24 (192)
456 2bdt_A BH3686; alpha-beta prot 94.5 0.02 6.7E-07 48.4 3.0 21 12-32 4-24 (189)
457 2yvu_A Probable adenylyl-sulfa 94.5 0.028 9.7E-07 47.3 4.0 23 9-31 12-34 (186)
458 2onk_A Molybdate/tungstate ABC 94.5 0.024 8.2E-07 50.4 3.6 21 12-32 26-46 (240)
459 1tev_A UMP-CMP kinase; ploop, 94.4 0.022 7.6E-07 48.0 3.3 21 11-31 4-24 (196)
460 2i3b_A HCR-ntpase, human cance 94.4 0.02 6.9E-07 48.9 2.9 21 12-32 3-23 (189)
461 2cbz_A Multidrug resistance-as 94.4 0.025 8.6E-07 50.1 3.6 20 12-31 33-52 (237)
462 1sgw_A Putative ABC transporte 94.4 0.024 8.1E-07 49.5 3.4 20 12-31 37-56 (214)
463 1htw_A HI0065; nucleotide-bind 94.4 0.022 7.7E-07 47.1 3.1 24 11-34 34-57 (158)
464 2if2_A Dephospho-COA kinase; a 94.4 0.023 7.8E-07 48.6 3.2 21 12-32 3-23 (204)
465 1qhx_A CPT, protein (chloramph 94.4 0.029 1E-06 46.7 3.8 21 12-32 5-25 (178)
466 2ff7_A Alpha-hemolysin translo 94.4 0.026 8.8E-07 50.4 3.6 20 12-31 37-56 (247)
467 1b0u_A Histidine permease; ABC 94.3 0.024 8.3E-07 51.0 3.4 20 12-31 34-53 (262)
468 1np6_A Molybdopterin-guanine d 94.3 0.024 8.2E-07 47.8 3.1 21 12-32 8-28 (174)
469 3tlx_A Adenylate kinase 2; str 94.3 0.029 1E-06 49.8 3.8 23 9-31 28-50 (243)
470 1nks_A Adenylate kinase; therm 94.3 0.027 9.2E-07 47.4 3.4 20 12-31 3-22 (194)
471 3gfo_A Cobalt import ATP-bindi 94.3 0.025 8.7E-07 51.3 3.4 20 12-31 36-55 (275)
472 1mv5_A LMRA, multidrug resista 94.3 0.027 9.1E-07 50.1 3.5 20 12-31 30-49 (243)
473 2jaq_A Deoxyguanosine kinase; 94.2 0.026 8.7E-07 48.0 3.2 20 12-31 2-21 (205)
474 3ec2_A DNA replication protein 94.2 0.022 7.4E-07 47.8 2.6 22 11-32 39-60 (180)
475 2pze_A Cystic fibrosis transme 94.2 0.03 1E-06 49.3 3.6 20 12-31 36-55 (229)
476 2chg_A Replication factor C sm 94.2 0.18 6.2E-06 42.7 8.6 20 13-32 41-60 (226)
477 2qt1_A Nicotinamide riboside k 94.2 0.038 1.3E-06 47.4 4.2 26 7-32 18-43 (207)
478 2olj_A Amino acid ABC transpor 94.2 0.027 9.4E-07 50.7 3.4 20 12-31 52-71 (263)
479 2dy1_A Elongation factor G; tr 94.1 0.051 1.7E-06 55.7 5.7 65 224-305 75-139 (665)
480 3uie_A Adenylyl-sulfate kinase 94.1 0.028 9.6E-07 48.1 3.3 24 8-31 23-46 (200)
481 3sr0_A Adenylate kinase; phosp 94.1 0.027 9.4E-07 48.8 3.2 22 11-32 1-22 (206)
482 3vaa_A Shikimate kinase, SK; s 94.1 0.029 1E-06 47.9 3.4 21 11-31 26-46 (199)
483 2rhm_A Putative kinase; P-loop 94.1 0.032 1.1E-06 47.0 3.6 21 11-31 6-26 (193)
484 2ehv_A Hypothetical protein PH 94.1 0.026 8.7E-07 49.7 3.1 21 12-32 32-52 (251)
485 1ji0_A ABC transporter; ATP bi 94.1 0.028 9.7E-07 49.8 3.3 20 12-31 34-53 (240)
486 2qi9_C Vitamin B12 import ATP- 94.1 0.03 1E-06 50.1 3.5 20 12-31 28-47 (249)
487 1aky_A Adenylate kinase; ATP:A 94.1 0.03 1E-06 48.6 3.4 22 10-31 4-25 (220)
488 1g6h_A High-affinity branched- 94.1 0.028 9.7E-07 50.4 3.3 20 12-31 35-54 (257)
489 2elf_A Protein translation elo 94.1 0.072 2.5E-06 50.4 6.3 109 223-349 60-179 (370)
490 3cm0_A Adenylate kinase; ATP-b 94.1 0.034 1.2E-06 46.7 3.6 22 10-31 4-25 (186)
491 4g1u_C Hemin import ATP-bindin 94.0 0.027 9.3E-07 50.8 3.1 20 12-31 39-58 (266)
492 2ixe_A Antigen peptide transpo 94.0 0.032 1.1E-06 50.5 3.6 20 12-31 47-66 (271)
493 2xtp_A GTPase IMAP family memb 94.0 0.049 1.7E-06 48.5 4.7 114 222-350 70-208 (260)
494 1vpl_A ABC transporter, ATP-bi 94.0 0.032 1.1E-06 50.1 3.4 21 12-32 43-63 (256)
495 2ihy_A ABC transporter, ATP-bi 93.9 0.035 1.2E-06 50.5 3.6 20 12-31 49-68 (279)
496 2wwf_A Thymidilate kinase, put 93.9 0.039 1.3E-06 47.3 3.8 22 10-31 10-31 (212)
497 2qag_A Septin-2, protein NEDD5 93.9 0.02 6.9E-07 54.1 2.0 66 225-307 97-189 (361)
498 1e4v_A Adenylate kinase; trans 93.9 0.031 1.1E-06 48.3 3.1 22 11-32 1-22 (214)
499 4a74_A DNA repair and recombin 93.9 0.029 1E-06 48.6 2.9 22 12-33 27-48 (231)
500 1jbk_A CLPB protein; beta barr 93.8 0.033 1.1E-06 46.3 3.1 23 11-33 44-66 (195)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=3.1e-36 Score=269.57 Aligned_cols=163 Identities=28% Similarity=0.533 Sum_probs=137.2
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+|||++|||||||++||+.+.|...+.||++ +++.+.+.+++..+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~--------------------------- 63 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIR--------------------------- 63 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEE---------------------------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEE---------------------------
Confidence 3579999999999999999999999999999999998 888888888888777
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|+++|..+++.|+++
T Consensus 64 ----------------------------------------------------------l~iwDtaGqe~~~~l~~~~~~~ 85 (216)
T 4dkx_A 64 ----------------------------------------------------------LQLWDTAGLERFRSLIPSYIRD 85 (216)
T ss_dssp ----------------------------------------------------------EEEECCSCTTTCGGGHHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCchhhhhHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||++++.||+++..|+..+..... +++|++|||||+|+.+
T Consensus 86 a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~--~~~piilVgNK~Dl~~------------------------------- 132 (216)
T 4dkx_A 86 SAAAVVVYDITNVNSFQQTTKWIDDVRTERG--SDVIIMLVGNKTDLAD------------------------------- 132 (216)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECTTCGG-------------------------------
T ss_pred ccEEEEEeecchhHHHHHHHHHHHHHHHhcC--CCCeEEEEeeccchHh-------------------------------
Confidence 9999999999999999999999999887653 5677777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.|.|+.++++.+|+.++++|
T Consensus 133 ------------------------------------------------------------~r~V~~~e~~~~a~~~~~~~ 152 (216)
T 4dkx_A 133 ------------------------------------------------------------KRQVSIEEGERKAKELNVMF 152 (216)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------------------------cCcccHHHHhhHHHHhCCee
Confidence 34567778899999999999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||++|.||+++|+.|++..
T Consensus 153 ~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 153 IETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHC
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999865
No 2
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.96 E-value=4.2e-29 Score=215.29 Aligned_cols=165 Identities=22% Similarity=0.270 Sum_probs=133.6
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+++.|.. +.||+++.+.+.+.+++..+.
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~------------------------- 55 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHL------------------------- 55 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEE-------------------------
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEE-------------------------
Confidence 445678999999999999999999999999987 788888777777777776666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|+++ ..++
T Consensus 56 ------------------------------------------------------------l~i~Dt~G~~~-----~~~~ 70 (178)
T 2iwr_A 56 ------------------------------------------------------------VLIREEAGAPD-----AKFS 70 (178)
T ss_dssp ------------------------------------------------------------EEEEECSSSCC-----HHHH
T ss_pred ------------------------------------------------------------EEEEECCCCch-----hHHH
Confidence 99999999987 4578
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+++|++++|||++++.+|+.+..|++.+...... .+.+|+++||||+|+.+.
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--------------------------- 123 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISAS--------------------------- 123 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTT---------------------------
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc---------------------------
Confidence 8999999999999999999999988877766532 246888899999888531
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ- 322 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~- 322 (373)
..+.+..++++.++...
T Consensus 124 --------------------------------------------------------------~~~~v~~~~~~~~~~~~~ 141 (178)
T 2iwr_A 124 --------------------------------------------------------------SPRVVGDARARALXADMK 141 (178)
T ss_dssp --------------------------------------------------------------BCCCSCHHHHHHHHHHHS
T ss_pred --------------------------------------------------------------ccCcCCHHHHHHHHHhhc
Confidence 01122334455565554
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+++|+||||++|.||+++|+.+++.+.
T Consensus 142 ~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 142 RCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp SEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999998653
No 3
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=5.3e-29 Score=216.84 Aligned_cols=164 Identities=20% Similarity=0.278 Sum_probs=135.0
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
+...+.+||+|+|++|||||||+++|+.+.|...+.+|.. .+.+.+.+++..+.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~------------------------- 68 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYL------------------------- 68 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEE-------------------------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEE-------------------------
Confidence 3456689999999999999999999999999988888844 44577777777666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|++.|. ++
T Consensus 69 ------------------------------------------------------------l~i~Dt~G~~~~~-----~~ 83 (184)
T 3ihw_A 69 ------------------------------------------------------------LLIRDEGGPPELQ-----FA 83 (184)
T ss_dssp ------------------------------------------------------------EEEEECSSSCCHH-----HH
T ss_pred ------------------------------------------------------------EEEEECCCChhhh-----ee
Confidence 9999999999887 78
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+++|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+...
T Consensus 84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~---------------------------- 134 (184)
T 3ihw_A 84 AWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAA---------------------------- 134 (184)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTT----------------------------
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------
Confidence 899999999999999999999999999887531 246888888888888531
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD- 323 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~- 323 (373)
..+.++.++++.++...+
T Consensus 135 -------------------------------------------------------------~~~~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 135 -------------------------------------------------------------NPRVIDDSRARKLSTDLKR 153 (184)
T ss_dssp -------------------------------------------------------------BCCCSCHHHHHHHHHHTTT
T ss_pred -------------------------------------------------------------cccccCHHHHHHHHHHcCC
Confidence 112234556677777776
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||||++|.||+++|+.+++.+.
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998654
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.96 E-value=2.1e-29 Score=224.77 Aligned_cols=177 Identities=21% Similarity=0.300 Sum_probs=145.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+|+|++|||||||+++|+.+.|...+.+|+++.+.+.+.+++..+.
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 76 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVE--------------------------- 76 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEE---------------------------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999999999998777766666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++++
T Consensus 77 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 77 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCHhHHHHHHHHcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHH-HHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~-l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+. +..|+..+.... +.+|+++||||+|+.++ ..
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~-~~-------------------------- 148 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTD-LS-------------------------- 148 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGC-HH--------------------------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccc-hh--------------------------
Confidence 999999999999999999 689999998875 68999999999999752 00
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
. ...+. ....+.++.++++.+++.+++
T Consensus 149 ------------------~----~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 149 ------------------T----LMELS------------------------------HQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp ------------------H----HHHHH------------------------------HTTCCCCCHHHHHHHHHHHTCS
T ss_pred ------------------h----hhhhc------------------------------ccccCccCHHHHHHHHHHcCCC
Confidence 0 00000 011244567788899999999
Q ss_pred eEEEeccCCCcC-HHHHHHHHHHHhhh
Q psy16673 325 QLLECSAKDNYN-IKEVFRTFLTLSQI 350 (373)
Q Consensus 325 ~~~E~SAktg~n-v~elf~~i~~~~~~ 350 (373)
+|+||||++|.| |+++|+.+++.+..
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 999999999998 99999999997643
No 5
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=2.7e-29 Score=223.03 Aligned_cols=180 Identities=26% Similarity=0.414 Sum_probs=144.1
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
.|...+.+||+++|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------ 58 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVN------------------------ 58 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEE------------------------
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEE------------------------
Confidence 35567789999999999999999999999999988899988777666666666556
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
+.+|||+|++.|..++..+
T Consensus 59 -------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~ 77 (212)
T 2j0v_A 59 -------------------------------------------------------------LGLWDTAGQEDYSRLRPLS 77 (212)
T ss_dssp -------------------------------------------------------------EEEECCCCCCCCCC--CGG
T ss_pred -------------------------------------------------------------EEEEECCCcHHHHHHHHhh
Confidence 9999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhh
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL 242 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~ 242 (373)
++++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +.+...
T Consensus 78 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~~~------------------- 134 (212)
T 2j0v_A 78 YRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPIVLVGTKLDLRDD-KGYLAD------------------- 134 (212)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC-HHHHHT-------------------
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeCHHhhhC-cccccc-------------------
Confidence 99999999999999999999997 7999988764 57999999999999752 110000
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
..+.++.++++.++...
T Consensus 135 ---------------------------------------------------------------~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 135 ---------------------------------------------------------------HTNVITSTQGEELRKQI 151 (212)
T ss_dssp ---------------------------------------------------------------CSSCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccCCCCHHHHHHHHHHc
Confidence 00123445667777777
Q ss_pred CC-eEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 323 DF-QLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 323 ~~-~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
++ +|+||||++|.||+++|+.+++.+...+.+
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 152 GAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 85 999999999999999999999976544433
No 6
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4e-29 Score=222.67 Aligned_cols=166 Identities=28% Similarity=0.371 Sum_probs=130.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc--ccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||++||++. .|...+.++..+++.+.+.+++..+.
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~------------------------- 88 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT------------------------- 88 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEE-------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeE-------------------------
Confidence 445799999999999999999999953 34555544444777787777777766
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~ 163 (373)
+.+|||+|++. +..+...+
T Consensus 89 ------------------------------------------------------------l~~~Dt~g~~~~~~~l~~~~ 108 (211)
T 2g3y_A 89 ------------------------------------------------------------IILLDMWENKGENEWLHDHC 108 (211)
T ss_dssp ------------------------------------------------------------EEEECCTTTTHHHHHHHHCC
T ss_pred ------------------------------------------------------------EEEeecCCCcchhhhHHHHH
Confidence 89999999887 56677888
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~---------------------------- 159 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR---------------------------- 159 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG----------------------------
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc----------------------------
Confidence 8999999999999999999999999888765421 24677888888888753
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.+..++++.++..++
T Consensus 160 ---------------------------------------------------------------~r~v~~~e~~~~a~~~~ 176 (211)
T 2g3y_A 160 ---------------------------------------------------------------CREVSVSEGRACAVVFD 176 (211)
T ss_dssp ---------------------------------------------------------------GCCSCHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------CceEeHHHHHHHHHHcC
Confidence 22233445667777788
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||||++|.||+++|+.+++.+.
T Consensus 177 ~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 177 CKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998653
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=2.5e-29 Score=217.27 Aligned_cols=167 Identities=24% Similarity=0.412 Sum_probs=140.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+.+.|...+.+++++.+.+.+.+++..+.
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 55 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH-------------------------- 55 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE--------------------------
T ss_pred CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEE--------------------------
Confidence 345689999999999999999999999999999999988766777777776666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..+...+++
T Consensus 56 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 76 (181)
T 3t5g_A 56 -----------------------------------------------------------LQLVDTAGQDEYSIFPQTYSI 76 (181)
T ss_dssp -----------------------------------------------------------EEEEECCCCCTTCCCCGGGTT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
++|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~------------------------------ 125 (181)
T 3t5g_A 77 DINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM------------------------------ 125 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT------------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh------------------------------
Confidence 99999999999999999999999998876542 24677888888888753
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++.++++
T Consensus 126 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 144 (181)
T 3t5g_A 126 -------------------------------------------------------------ERVISYEEGKALAESWNAA 144 (181)
T ss_dssp -------------------------------------------------------------TCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------cceecHHHHHHHHHHhCCc
Confidence 2233455677788888999
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+||||++|.||+++|+.+++.+.
T Consensus 145 ~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 145 FLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp EEECCTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999654
No 8
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=218.54 Aligned_cols=166 Identities=23% Similarity=0.294 Sum_probs=131.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
.....+||+|+|++|||||||+++|++..+...+.+++. +++.+.+.+++..+.
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 73 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT------------------------- 73 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEE-------------------------
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEE-------------------------
Confidence 345679999999999999999999986555433444444 666677777766666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~ 163 (373)
+.+|||+|++.+.. ++..+
T Consensus 74 ------------------------------------------------------------l~i~Dt~g~~~~~~~~~~~~ 93 (195)
T 3cbq_A 74 ------------------------------------------------------------LVVYDIWEQGDAGGWLRDHC 93 (195)
T ss_dssp ------------------------------------------------------------EEEECCCCCSGGGHHHHHHH
T ss_pred ------------------------------------------------------------EEEEecCCCccchhhhHHHh
Confidence 99999999998875 88889
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.+|++++|||++++.+|+.+..|+.++..... ...+|+++||||+|+.+
T Consensus 94 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------- 144 (195)
T 3cbq_A 94 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR---------------------------- 144 (195)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT----------------------------
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc----------------------------
Confidence 9999999999999999999999999998876542 13678888888888764
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.++.++++.++...+
T Consensus 145 ---------------------------------------------------------------~~~v~~~~~~~~a~~~~ 161 (195)
T 3cbq_A 145 ---------------------------------------------------------------SREVSLEEGRHLAGTLS 161 (195)
T ss_dssp ---------------------------------------------------------------TCCSCHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------cCCcCHHHHHHHHHHhC
Confidence 12233445667777788
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||||++|.||+++|+.+++.+
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 9
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=217.63 Aligned_cols=166 Identities=28% Similarity=0.386 Sum_probs=133.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+++.|...+.+|+++.+...+.+++..+.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 70 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVH-------------------------- 70 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE--------------------------
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEE--------------------------
Confidence 455689999999999999999999999999999999998766666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+++|||+|++.|..+ ..+++
T Consensus 71 -----------------------------------------------------------l~i~Dt~G~~~~~~~-~~~~~ 90 (187)
T 3c5c_A 71 -----------------------------------------------------------LRVMDTADLDTPRNC-ERYLN 90 (187)
T ss_dssp -----------------------------------------------------------EEEEECCC---CCCT-HHHHT
T ss_pred -----------------------------------------------------------EEEEECCCCCcchhH-HHHHh
Confidence 999999999998876 56899
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+..|+..+..... ....+|+++||||+|+.+
T Consensus 91 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~----------------------------- 141 (187)
T 3c5c_A 91 WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ----------------------------- 141 (187)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG-----------------------------
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh-----------------------------
Confidence 99999999999999999999999999887641 114677777777777753
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.++.++++.+++..++
T Consensus 142 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 142 --------------------------------------------------------------YRQVTKAEGVALAGRFGC 159 (187)
T ss_dssp --------------------------------------------------------------GCSSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------cCccCHHHHHHHHHHcCC
Confidence 223345566777888899
Q ss_pred eEEEecc-CCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSA-KDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SA-ktg~nv~elf~~i~~~~ 348 (373)
+|+|||| ++|.||+++|+.+++.+
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred cEEEEeecCccccHHHHHHHHHHHH
Confidence 9999999 89999999999999854
No 10
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=217.90 Aligned_cols=164 Identities=29% Similarity=0.448 Sum_probs=131.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++..+.
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 79 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVK-------------------------- 79 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEE--------------------------
Confidence 44579999999999999999999999999888888887 666677777666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|+++|..++..+++
T Consensus 80 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 100 (201)
T 2hup_A 80 -----------------------------------------------------------LQIWDTAGQERFRTITQSYYR 100 (201)
T ss_dssp -----------------------------------------------------------EEEECCTTCGGGHHHHHHHHT
T ss_pred -----------------------------------------------------------EEEEECCCcHhHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~------------------------------ 148 (201)
T 2hup_A 101 SANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE------------------------------ 148 (201)
T ss_dssp TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG------------------------------
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc------------------------------
Confidence 99999999999999999999999999887642 5688888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
.+.+..++++.++...++
T Consensus 149 -------------------------------------------------------------~~~v~~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 149 -------------------------------------------------------------LREVSLAEAQSLAEHYDIL 167 (201)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCS
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCC
Confidence 122233455667777888
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.|++.+
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999865
No 11
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.96 E-value=7.9e-29 Score=216.98 Aligned_cols=166 Identities=22% Similarity=0.318 Sum_probs=141.2
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.....+||+++|++|||||||+++|+++.|...+.+|+++.+...+.+++..+.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 72 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-------------------------- 72 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEE--------------------------
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEE--------------------------
Confidence 345679999999999999999999999999988999998777776777766666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 73 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 73 -----------------------------------------------------------LHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCcHHHHHHhHhhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++ .
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~-------------------------- 143 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKD-G-------------------------- 143 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCT-T--------------------------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC-C--------------------------
Confidence 99999999999999999998 67998888664 57899999999998741 0
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 144 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 161 (194)
T 3reg_A 144 --------------------------------------------------------------SDDVTKQEGDDLCQKLGC 161 (194)
T ss_dssp --------------------------------------------------------------TTCCCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------CCcccHHHHHHHHHhcCC
Confidence 112344566777777888
Q ss_pred e-EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 Q-LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~-~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+ |+||||++|.||+++|+.+++.+
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHH
Confidence 8 99999999999999999999965
No 12
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=8.5e-29 Score=213.02 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=136.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++ ..+.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~------------------------- 57 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVT------------------------- 57 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEE-------------------------
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEE-------------------------
Confidence 45679999999999999999999999999888888886 67777776655 3445
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 58 ------------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~ 77 (178)
T 2hxs_A 58 ------------------------------------------------------------LQIWDIGGQTIGGKMLDKYI 77 (178)
T ss_dssp ------------------------------------------------------------EEEEECTTCCTTCTTHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCccccchhhHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
.++|++++|||++++.+|+.+..|+..+..........| +++||||+|+.+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~---------------------------- 129 (178)
T 2hxs_A 78 YGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH---------------------------- 129 (178)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG----------------------------
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc----------------------------
Confidence 999999999999999999999999998887542212333 677777777753
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.++.++++.+++..+
T Consensus 130 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 146 (178)
T 2hxs_A 130 ---------------------------------------------------------------MRTIKPEKHLRFCQENG 146 (178)
T ss_dssp ---------------------------------------------------------------GCSSCHHHHHHHHHHHT
T ss_pred ---------------------------------------------------------------ccccCHHHHHHHHHHcC
Confidence 22233445666777778
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|++|||++|.||+++|+.+++.+
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 147 FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999854
No 13
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.96 E-value=2.1e-28 Score=211.77 Aligned_cols=165 Identities=28% Similarity=0.470 Sum_probs=141.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+....++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI--------------------------- 67 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEE---------------------------
Confidence 45689999999999999999999999999999999988666777777777666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++++
T Consensus 68 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 68 ----------------------------------------------------------LDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp ----------------------------------------------------------EEEEECCSCGGGCSSHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~------------------------------- 137 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH------------------------------- 137 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST-------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh-------------------------------
Confidence 9999999999999999999999998876542 25678888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 138 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 157 (183)
T 3kkq_A 138 ------------------------------------------------------------LRKVTRDQGKEMATKYNIPY 157 (183)
T ss_dssp ------------------------------------------------------------TCCSCHHHHHHHHHHHTCCE
T ss_pred ------------------------------------------------------------ccCcCHHHHHHHHHHhCCeE
Confidence 22234456677777888999
Q ss_pred EEeccC-CCcCHHHHHHHHHHHh
Q psy16673 327 LECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
++|||+ +|.||+++|+.+++.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHH
Confidence 999999 9999999999999864
No 14
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=3.8e-28 Score=209.15 Aligned_cols=167 Identities=31% Similarity=0.510 Sum_probs=139.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|...+.+|+++.+.+.+.+++..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 58 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPAR--------------------------- 58 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEE---------------------------
Confidence 45679999999999999999999999999988889888666666666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+++|..++..++..
T Consensus 59 ----------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 59 ----------------------------------------------------------LDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp ----------------------------------------------------------EEEEECCCTTTTSCCHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCchhhHHHHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+..... ...+|+++||||+|+.+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~------------------------------- 128 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES------------------------------- 128 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG-------------------------------
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc-------------------------------
Confidence 9999999999999999999999988855432 24678888888888764
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 129 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 148 (181)
T 2fn4_A 129 ------------------------------------------------------------QRQVPRSEASAFGASHHVAY 148 (181)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 11223345566677778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.|++.+..
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987643
No 15
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.9e-28 Score=216.58 Aligned_cols=164 Identities=27% Similarity=0.469 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.+|++ +++.+.+.+++..+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 76 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK--------------------------- 76 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEE---------------------------
Confidence 3468999999999999999999999999888888887 666777777776666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..+...+++.
T Consensus 77 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 98 (201)
T 2ew1_A 77 ----------------------------------------------------------LQIWDTAGQERFRSITQSYYRS 98 (201)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGHHHHGGGSTT
T ss_pred ----------------------------------------------------------EEEEECCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 99 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~------------------------------- 145 (201)
T 2ew1_A 99 ANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE------------------------------- 145 (201)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG-------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-------------------------------
Confidence 9999999999999999999999999887642 4678888888888764
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.+++..+++|
T Consensus 146 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 165 (201)
T 2ew1_A 146 ------------------------------------------------------------RREVSQQRAEEFSEAQDMYY 165 (201)
T ss_dssp ------------------------------------------------------------GCSSCHHHHHHHHHHHTCCE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCEE
Confidence 11223344556667778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+||||++|.||+++|+.+++.+.
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 166 LETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 16
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=3e-28 Score=213.05 Aligned_cols=169 Identities=31% Similarity=0.478 Sum_probs=141.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 66 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK--------------------------- 66 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEE---------------------------
Confidence 3468999999999999999999999999888888877 666677777766666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 67 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 67 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGCTTHHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCcHhhhhhHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+.
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~------------------------------ 136 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK------------------------------ 136 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccc------------------------------
Confidence 9999999999999999999999999987643 47888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 137 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 155 (196)
T 3tkl_A 137 -------------------------------------------------------------KVVDYTTAKEFADSLGIPF 155 (196)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCCE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCcE
Confidence 1223345667778889999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
++|||++|.||+++|+.+++.+......
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999976554433
No 17
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.96 E-value=1.7e-28 Score=212.96 Aligned_cols=169 Identities=28% Similarity=0.506 Sum_probs=140.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+++.+...+.+++.+.+...+.+++..+.
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 53 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL---------------------------- 53 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEE----------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEE----------------------------
Confidence 4579999999999999999999999999888888888777777777777666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++..+
T Consensus 54 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 76 (189)
T 4dsu_A 54 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 76 (189)
T ss_dssp ---------------------------------------------------------EEEEECCCC---CTTHHHHHHHC
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHHhcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+...
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~------------------------------- 124 (189)
T 4dsu_A 77 EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR------------------------------- 124 (189)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC-------------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc-------------------------------
Confidence 999999999999999999999999887652 257899999999998631
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+..+..+.++...+++|+
T Consensus 125 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 143 (189)
T 4dsu_A 125 -------------------------------------------------------------TVDTKQAQDLARSYGIPFI 143 (189)
T ss_dssp -------------------------------------------------------------SSCHHHHHHHHHHHTCCEE
T ss_pred -------------------------------------------------------------ccCHHHHHHHHHHcCCeEE
Confidence 1122345566677788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
+|||++|.|++++|+.+++.+...+.+
T Consensus 144 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 144 ETSAKTRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999977555444
No 18
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=4.3e-28 Score=206.04 Aligned_cols=120 Identities=34% Similarity=0.633 Sum_probs=104.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+++.|...+.+|+++.+.+.+.+++..+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM------------------------------ 52 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEE------------------------------
Confidence 58999999999999999999999999888888888666666655555555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|..++..++.++|+
T Consensus 53 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d~ 77 (167)
T 1c1y_A 53 -------------------------------------------------------LEILDTAGTEQFTAMRDLYMKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEEECSSCSSTTHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCChHHHHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 9999999999999999999998887642 25788888888888864
No 19
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.96 E-value=4.6e-29 Score=245.87 Aligned_cols=193 Identities=17% Similarity=0.124 Sum_probs=134.4
Q ss_pred eeeecccccc--------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDL--------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~--------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|++ .+......++..+|++++|+|+.+..++.. .|+..+... ...|+++|+||+|+...
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT----CCSCEEEEEECCCC---
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH----cCCCEEEEEECccCccc
Confidence 8999999986 566777888999999999999988766654 233332221 47899999999998530
Q ss_pred c------------------------------------------------------------------------cc-----
Q psy16673 217 H------------------------------------------------------------------------RA----- 219 (373)
Q Consensus 217 ~------------------------------------------------------------------------r~----- 219 (373)
. +.
T Consensus 127 ~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~ 206 (436)
T 2hjg_A 127 RANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV 206 (436)
T ss_dssp --CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC--
T ss_pred hhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC
Confidence 0 00
Q ss_pred -------------cccccceeeeccCC----------CCCchhhhh-ccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 220 -------------VHLEDVDILDTCGD----------LQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 220 -------------~~~~~~~~~dtag~----------~~~~~~~~~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
.....+.++||+|+ ++|..++.. +++.++++++|+|++++.++++. .|...+...
T Consensus 207 ~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~~ 285 (436)
T 2hjg_A 207 AGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHEA 285 (436)
T ss_dssp -------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHHT
T ss_pred CCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHHc
Confidence 00011578899987 556566654 78899999999999999999886 355555431
Q ss_pred ccCCCCCchhhccccccceeeeeccccccccchhhhh-----hHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-----YFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 276 ~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~-----~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+.++++|+||||+.+.+.++. +..+.++...++++++|||++|.||+++|+.+.+.+..
T Consensus 286 ----------------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 286 ----------------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp ----------------TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ----------------CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 234569999999977655432 23344555568999999999999999999999998876
Q ss_pred hccCCCcccc
Q psy16673 351 LTTNGDENSL 360 (373)
Q Consensus 351 ~~~~~~~~~~ 360 (373)
..++..+..+
T Consensus 350 ~~~~~~t~~l 359 (436)
T 2hjg_A 350 HSLRVQTNVL 359 (436)
T ss_dssp HTCCCCHHHH
T ss_pred hhcCCCHHHH
Confidence 6655554443
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=4.4e-28 Score=209.07 Aligned_cols=167 Identities=27% Similarity=0.423 Sum_probs=137.4
Q ss_pred CcCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccc
Q psy16673 4 VMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLE 82 (373)
Q Consensus 4 ~~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (373)
.......+||+++|++|||||||+++|+.+.+...+.++++ ++..+.+.+++..+.
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 62 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK----------------------- 62 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEE-----------------------
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEE-----------------------
Confidence 33456689999999999999999999999999888777777 555666666665555
Q ss_pred ceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHh
Q psy16673 83 DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRL 162 (373)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~ 162 (373)
+.+||++|++.|..++..
T Consensus 63 --------------------------------------------------------------~~i~Dt~G~~~~~~~~~~ 80 (181)
T 2efe_B 63 --------------------------------------------------------------FEIWDTAGQERYHSLAPM 80 (181)
T ss_dssp --------------------------------------------------------------EEEEECCCSGGGGGGTHH
T ss_pred --------------------------------------------------------------EEEEeCCCChhhhhhhHH
Confidence 999999999999999999
Q ss_pred hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhh
Q psy16673 163 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRL 242 (373)
Q Consensus 163 ~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~ 242 (373)
+++.+|++++|||++++.+|+.+..|+..+..... +.+|+++|+||+|+.+.
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~-------------------------- 132 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLDA-------------------------- 132 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT--------------------------
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc--------------------------
Confidence 99999999999999999999999999999887642 57888899999988641
Q ss_pred ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc
Q psy16673 243 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 322 (373)
Q Consensus 243 s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~ 322 (373)
+.+..++.+.+++..
T Consensus 133 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 147 (181)
T 2efe_B 133 -----------------------------------------------------------------RKVTAEDAQTYAQEN 147 (181)
T ss_dssp -----------------------------------------------------------------CCSCHHHHHHHHHHT
T ss_pred -----------------------------------------------------------------ccCCHHHHHHHHHHc
Confidence 112233455666777
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|++|||++|.||+++|+.|++.+
T Consensus 148 ~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 148 GLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp TCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999854
No 21
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=1.2e-28 Score=212.90 Aligned_cols=175 Identities=26% Similarity=0.454 Sum_probs=126.9
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+.+.|...+.+|+++.+...+.+++..+.
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 57 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVN------------------------- 57 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC--------------------------------
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEE-------------------------
Confidence 4566789999999999999999999999999888888888666555555554444
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+++|||+|+++|..++..++
T Consensus 58 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 77 (182)
T 3bwd_D 58 ------------------------------------------------------------LGLWDTAGQEDYNRLRPLSY 77 (182)
T ss_dssp ------------------------------------------------------------CEEECCCC-CTTTTTGGGGG
T ss_pred ------------------------------------------------------------EEEEECCCChhhhhhHHhhc
Confidence 89999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +....
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~~~--------------------- 132 (182)
T 3bwd_D 78 RGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDD-KQFFI--------------------- 132 (182)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTC-HHHHH---------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcC-ccccc---------------------
Confidence 9999999999999999999997 6999888764 57999999999999752 11000
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
. ....+.++.++++.+++..+
T Consensus 133 ------------------------------~-----------------------------~~~~~~v~~~~~~~~~~~~~ 153 (182)
T 3bwd_D 133 ------------------------------D-----------------------------HPGAVPITTVQGEELKKLIG 153 (182)
T ss_dssp ------------------------------H-----------------------------C--CCCCCHHHHHHHHHHHT
T ss_pred ------------------------------c-----------------------------cccCCCCCHHHHHHHHHHcC
Confidence 0 00012234556777888788
Q ss_pred C-eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 F-QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~-~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+ +|+||||++|.||+++|+.+++.+
T Consensus 154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6 999999999999999999999864
No 22
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.96 E-value=3.8e-28 Score=207.16 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=122.4
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|++..+...+.++.. +.+.+.+.+++..+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 52 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVT----------------------------- 52 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEE-----------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEE-----------------------------
Confidence 47999999999999999999997776655544444 666677777776666
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhhhhhc
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLSIATA 167 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~~~~~ 167 (373)
+.+||++|++.+.. ++..++.++
T Consensus 53 --------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~ 76 (169)
T 3q85_A 53 --------------------------------------------------------LIVYDIWEQGDAGGWLQDHCLQTG 76 (169)
T ss_dssp --------------------------------------------------------EEEECCCCC--------CHHHHHC
T ss_pred --------------------------------------------------------EEEEECCCccccchhhhhhhhccC
Confidence 99999999999876 778889999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+|+.+..|+..+..... ..++|+++||||+|+.+
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~-------------------------------- 123 (169)
T 3q85_A 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR-------------------------------- 123 (169)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG--------------------------------
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh--------------------------------
Confidence 999999999999999999999998887642 13678888888888753
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.+++..+++|+
T Consensus 124 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 144 (169)
T 3q85_A 124 -----------------------------------------------------------SREVSLEEGRHLAGTLSCKHI 144 (169)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------cccCCHHHHHHHHHHcCCcEE
Confidence 222345566778888899999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~ 350 (373)
||||++|.|++++|+.+++.+..
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999986543
No 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=2.7e-28 Score=208.06 Aligned_cols=164 Identities=26% Similarity=0.403 Sum_probs=130.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 56 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVN-------------------------- 56 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEE--------------------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEE--------------------------
Confidence 35679999999999999999999999999888888887 555566666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..+...++.
T Consensus 57 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 57 -----------------------------------------------------------LAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp -----------------------------------------------------------EEEEECCCC-------CCSST
T ss_pred -----------------------------------------------------------EEEEECCCcHhhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------------------------------ 125 (170)
T 1z08_A 78 DSNGAILVYDITDEDSFQKVKNWVKELRKMLG--NEICLCIVGNKIDLEK------------------------------ 125 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHG--GGSEEEEEEECGGGGG------------------------------
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECccccc------------------------------
Confidence 99999999999999999999999998877642 4678888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 126 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 126 -------------------------------------------------------------ERHVSIQEAESYAESVGAK 144 (170)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCe
Confidence 1222334556677778899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.|++++|+.+++.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999854
No 24
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=4.8e-28 Score=206.14 Aligned_cols=164 Identities=26% Similarity=0.433 Sum_probs=135.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+.+.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 56 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVK-------------------------- 56 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE--------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999998887777776 445556666655555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 57 -----------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~ 77 (170)
T 1r2q_A 57 -----------------------------------------------------------FEIWDTAGQERYHSLAPMYYR 77 (170)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGGGGHHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHhhhhhHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... +.+|+++||||+|+.+.
T Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~~----------------------------- 126 (170)
T 1r2q_A 78 GAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANK----------------------------- 126 (170)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG-----------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCccc-----------------------------
Confidence 99999999999999999999999998887642 57888888999988641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 127 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 144 (170)
T 1r2q_A 127 --------------------------------------------------------------RAVDFQEAQSYADDNSLL 144 (170)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112233455566677899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.|++++|+.|++.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999843
No 25
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=1.6e-28 Score=213.36 Aligned_cols=175 Identities=22% Similarity=0.387 Sum_probs=141.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+++.+.+++..+.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 56 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 56 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEE---------------------------
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEE---------------------------
Confidence 45689999999999999999999999999988889988666666666655555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++.+
T Consensus 57 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 78 (184)
T 1m7b_A 57 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 78 (184)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCChhhhhhHHhhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++..
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~--------------------------- 128 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVS--------------------------- 128 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHH---------------------------
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEEcchhhcchh---------------------------
Confidence 9999999999999999999 67999888765 5799999999999975200
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
...++.. ...+.++.++++.+++..+ +
T Consensus 129 ----------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~ 156 (184)
T 1m7b_A 129 ----------------------TLVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 156 (184)
T ss_dssp ----------------------HHHHHHT------------------------------TTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------hHhhhhh------------------------------cccCCCCHHHHHHHHHHcCCc
Confidence 0001110 0123345667788888777 7
Q ss_pred eEEEeccC-CCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
+|+||||+ +|.||+++|+.+++.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHH
Confidence 99999999 6899999999999864
No 26
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=5.3e-28 Score=205.08 Aligned_cols=162 Identities=31% Similarity=0.549 Sum_probs=137.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 52 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSV------------------------------ 52 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEE------------------------------
Confidence 58999999999999999999999999888888888776777777666666
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..++..++..+++
T Consensus 53 -------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~~~ 77 (167)
T 1kao_A 53 -------------------------------------------------------LEILDTAGTEQFASMRDLYIKNGQG 77 (167)
T ss_dssp -------------------------------------------------------EEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCCchhhHHHHHHHhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------------- 122 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES---------------------------------- 122 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG----------------------------------
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc----------------------------------
Confidence 9999999999999999999998877642 24688888888888754
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.++...+++|++|
T Consensus 123 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 123 ---------------------------------------------------------EREVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp ---------------------------------------------------------GCCSCHHHHHHHHHHHTSCEEEE
T ss_pred ---------------------------------------------------------cccCCHHHHHHHHHHhCCCEEEe
Confidence 11223334556666778899999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.|++++|+.+++.+
T Consensus 146 Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 146 SAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999854
No 27
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.3e-28 Score=206.84 Aligned_cols=164 Identities=38% Similarity=0.603 Sum_probs=134.4
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+++.|...+.+++...+...+..++..+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 52 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICT----------------------------- 52 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEE-----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEE-----------------------------
Confidence 468999999999999999999999988888888877655555555555445
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+|||+|++.|..+...++..+|
T Consensus 53 --------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~~ 76 (172)
T 2erx_A 53 --------------------------------------------------------LQITDTTGSHQFPAMQRLSISKGH 76 (172)
T ss_dssp --------------------------------------------------------EEEEECCSCSSCHHHHHHHHHHCS
T ss_pred --------------------------------------------------------EEEEECCCchhhHHHHHHhcccCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+++.+..|+..+.+.....+.+|+++|+||+|+...
T Consensus 77 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~-------------------------------- 124 (172)
T 2erx_A 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS-------------------------------- 124 (172)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--------------------------------
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--------------------------------
Confidence 999999999999999999999888877543457888888888888641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+...+++.++..++++|++
T Consensus 125 -----------------------------------------------------------~~v~~~~~~~~~~~~~~~~~~ 145 (172)
T 2erx_A 125 -----------------------------------------------------------REVQSSEAEALARTWKCAFME 145 (172)
T ss_dssp -----------------------------------------------------------CCSCHHHHHHHHHHHTCEEEE
T ss_pred -----------------------------------------------------------cccCHHHHHHHHHHhCCeEEE
Confidence 112233445566677889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.|++++|+.+++.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTC
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999854
No 28
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=6.9e-29 Score=214.88 Aligned_cols=164 Identities=27% Similarity=0.453 Sum_probs=109.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 58 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK--------------------------- 58 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEE---------------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEE---------------------------
Confidence 4579999999999999999999999988888888887 555666666666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++++
T Consensus 59 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 59 ----------------------------------------------------------LQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp ----------------------------------------------------------EEEEEC---------CCTTTTT
T ss_pred ----------------------------------------------------------EEEEcCCCChhhhhhHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~------------------------------ 128 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDK------------------------------ 128 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSC------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCcc------------------------------
Confidence 9999999999999999999999999887632 57888999999998641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.++.++++.+++..+++|
T Consensus 129 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 129 -------------------------------------------------------------RQVSKERGEKLALDYGIKF 147 (183)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------CcCCHHHHHHHHHHcCCeE
Confidence 1122344556667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 148 ~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 148 METSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp EECCC---CCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 29
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=207.91 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+++.+...+.++..+++.+.+.+++..+.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 53 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTT---------------------------- 53 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEE----------------------------
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEE----------------------------
Confidence 3568999999999999999999998887655443333556666666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc--hhHhHHhhhh
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ--FPAMRRLSIA 165 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~--~~~~~~~~~~ 165 (373)
+.+||++|++. +..+...+++
T Consensus 54 ---------------------------------------------------------~~~~D~~g~~~~~~~~~~~~~~~ 76 (175)
T 2nzj_A 54 ---------------------------------------------------------LVVVDTWEAEKLDKSWSQESCLQ 76 (175)
T ss_dssp ---------------------------------------------------------EEEECCC-------CHHHHHTTT
T ss_pred ---------------------------------------------------------EEEEecCCCCccchhhhHHhhcc
Confidence 99999999988 6778888899
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+.
T Consensus 77 ~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~----------------------------- 126 (175)
T 2nzj_A 77 GGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC----------------------------- 126 (175)
T ss_dssp SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc-----------------------------
Confidence 99999999999999999999999988876531 246788888888887641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 127 --------------------------------------------------------------~~v~~~~~~~~~~~~~~~ 144 (175)
T 2nzj_A 127 --------------------------------------------------------------REVSVEEGRACAVVFDCK 144 (175)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTSE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 122333455666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.+++.+.
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998654
No 30
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=6.3e-28 Score=211.53 Aligned_cols=165 Identities=27% Similarity=0.371 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc--ccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+||+++|++|||||||+++|++. .|...+.++..+++.+.+.+++..+.
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESAT-------------------------- 57 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEE--------------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEE--------------------------
Confidence 45689999999999999999999953 44555544444777777777777666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccc-hhHhHHhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQ-FPAMRRLSI 164 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~-~~~~~~~~~ 164 (373)
+.+|||+|++. +..+...++
T Consensus 58 -----------------------------------------------------------l~~~Dt~~~~~~~~~~~~~~~ 78 (192)
T 2cjw_A 58 -----------------------------------------------------------IILLDMWENKGENEWLHDHCM 78 (192)
T ss_dssp -----------------------------------------------------------EEEECCCCC----CTTGGGHH
T ss_pred -----------------------------------------------------------EEEEEeccCcchhhhHHHhhc
Confidence 88999999876 556778889
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+.++++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~----------------------------- 128 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR----------------------------- 128 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGG-----------------------------
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhc-----------------------------
Confidence 999999999999999999999999988876532 24678888888888753
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 129 --------------------------------------------------------------~r~v~~~~~~~~a~~~~~ 146 (192)
T 2cjw_A 129 --------------------------------------------------------------XREVSVSEGRAXAVVFDX 146 (192)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHTTC
T ss_pred --------------------------------------------------------------cccccHHHHHHHHHHhCC
Confidence 122233456667777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||||++|.||+++|+.+++.+.
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 31
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-28 Score=213.59 Aligned_cols=175 Identities=23% Similarity=0.394 Sum_probs=144.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+.+.+.+++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYL--------------------------- 67 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEE---------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999988899988777666666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|+++|..++..++++
T Consensus 68 ----------------------------------------------------------~~i~D~~G~~~~~~~~~~~~~~ 89 (194)
T 2atx_A 68 ----------------------------------------------------------LGLYDTAGQEDYDRLRPLSYPM 89 (194)
T ss_dssp ----------------------------------------------------------EEEECCCCSSSSTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCcchhHHHHHhcCC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+.. .
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-~-------------------------- 139 (194)
T 2atx_A 90 TDVFLICFSVVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDP-K-------------------------- 139 (194)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCH-H--------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccc-c--------------------------
Confidence 99999999999999999997 7999988764 589999999999997520 0
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
..+.+. ....+.+..++++.+++..++
T Consensus 140 ----------------------~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 167 (194)
T 2atx_A 140 ----------------------TLARLN------------------------------DMKEKPICVEQGQKLAKEIGAC 167 (194)
T ss_dssp ----------------------HHHHHT------------------------------TTTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------chhhcc------------------------------cccCcccCHHHHHHHHHHcCCc
Confidence 000000 011234556677888888887
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.+++.+
T Consensus 168 ~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 168 CYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999864
No 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=217.36 Aligned_cols=169 Identities=26% Similarity=0.432 Sum_probs=134.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+|+|++|||||||+++|+++.|...+.+++++.+...+.+++..+.
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 73 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFH------------------------- 73 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEE-------------------------
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEE-------------------------
Confidence 4556789999999999999999999999999988888888665665555555555
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 74 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 93 (201)
T 3oes_A 74 ------------------------------------------------------------LHLVDTAGQDEYSILPYSFI 93 (201)
T ss_dssp ------------------------------------------------------------EEEEEECCCCTTCCCCGGGT
T ss_pred ------------------------------------------------------------EEEEECCCccchHHHHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~----------------------------- 143 (201)
T 3oes_A 94 IGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP----------------------------- 143 (201)
T ss_dssp TTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG-----------------------------
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc-----------------------------
Confidence 999999999999999999999999998876532 24567777777777653
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+...+++.++...++
T Consensus 144 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 144 --------------------------------------------------------------EREVQAVEGKKLAESWGA 161 (201)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHhCC
Confidence 223344566777888899
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|++|||++|.||+++|+.|++.+..
T Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 162 TFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999996543
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=5.5e-28 Score=211.19 Aligned_cols=166 Identities=28% Similarity=0.412 Sum_probs=134.5
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 71 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIK------------------------- 71 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEE-------------------------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE-------------------------
Confidence 345589999999999999999999999999888878777 555566666666566
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..++..++
T Consensus 72 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 91 (191)
T 2a5j_A 72 ------------------------------------------------------------LQIWDTAGQESFRSITRSYY 91 (191)
T ss_dssp ------------------------------------------------------------EEEECCTTGGGTSCCCHHHH
T ss_pred ------------------------------------------------------------EEEEECCCchhhhhhHHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
+++|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 92 ~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~----------------------------- 140 (191)
T 2a5j_A 92 RGAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES----------------------------- 140 (191)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG-----------------------------
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC-----------------------------
Confidence 999999999999999999999999999887642 5678888888888754
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 141 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 141 --------------------------------------------------------------RRDVKREEGEAFAREHGL 158 (191)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 112233455666777789
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.|++.+.
T Consensus 159 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 159 IFMETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 34
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=213.88 Aligned_cols=171 Identities=25% Similarity=0.398 Sum_probs=131.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 78 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV------------------------- 78 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEE-------------------------
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEE-------------------------
Confidence 455689999999999999999999999999888888877 556666777666666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..+...++
T Consensus 79 ------------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~ 98 (199)
T 2p5s_A 79 ------------------------------------------------------------LQLWDTAGQERFRSIAKSYF 98 (199)
T ss_dssp ------------------------------------------------------------EEEEECTTCTTCHHHHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCcchhhhHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+...
T Consensus 99 ~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~~~~-------------------------- 150 (199)
T 2p5s_A 99 RKADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIRDTAA-------------------------- 150 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHH--------------------------
T ss_pred hhCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccccccc--------------------------
Confidence 999999999999999999999999998877642 4789999999999864100
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
....+.+..++++.++...++
T Consensus 151 -----------------------------------------------------------~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 151 -----------------------------------------------------------TEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp -----------------------------------------------------------HTTCCCCCHHHHHHHHHHHTC
T ss_pred -----------------------------------------------------------cccccccCHHHHHHHHHHcCC
Confidence 001123345566777888899
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||||++|.||+++|+.+++.+
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999865
No 35
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=1.2e-27 Score=203.02 Aligned_cols=163 Identities=27% Similarity=0.495 Sum_probs=134.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
+.+||+++|++|||||||+++|+.+.|...+.++..+.+...+.+++..+.
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~----------------------------- 53 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ----------------------------- 53 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE-----------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEE-----------------------------
Confidence 468999999999999999999999999888888888666666666666555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++++..++..++..+|
T Consensus 54 --------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 54 --------------------------------------------------------IDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp --------------------------------------------------------EEEEECCC---CHHHHHHHHHHCS
T ss_pred --------------------------------------------------------EEEEECCCcchhHHHHHHHhhcCC
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+.
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~-------------------------------- 124 (168)
T 1u8z_A 78 GFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK-------------------------------- 124 (168)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGGG--------------------------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECcccccc--------------------------------
Confidence 99999999999999999999999887652 246788888888887641
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
+.+..++++.++...+++|++
T Consensus 125 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 125 -----------------------------------------------------------RQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp -----------------------------------------------------------CCSCHHHHHHHHHHHTCEEEE
T ss_pred -----------------------------------------------------------CccCHHHHHHHHHHcCCeEEE
Confidence 112334556666677889999
Q ss_pred eccCCCcCHHHHHHHHHHHh
Q psy16673 329 CSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~~ 348 (373)
|||++|.|++++|+.+++.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999864
No 36
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=214.08 Aligned_cols=178 Identities=26% Similarity=0.417 Sum_probs=136.2
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 69 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR-------------------------- 69 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEE--------------------------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEE--------------------------
Confidence 456689999999999999999999999999888889988777766766666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|+++|..++..++.
T Consensus 70 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 90 (201)
T 2q3h_A 70 -----------------------------------------------------------LQLCDTAGQDEFDKLRPLCYT 90 (201)
T ss_dssp -----------------------------------------------------------EEEEECCCSTTCSSSGGGGGT
T ss_pred -----------------------------------------------------------EEEEECCCCHHHHHHhHhhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... ...
T Consensus 91 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~~------------------------ 142 (201)
T 2q3h_A 91 NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPIILVGTQSDLRED-VKV------------------------ 142 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSSCEEEEEECGGGGGC-HHH------------------------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhhc-hhh------------------------
Confidence 999999999999999999997 6999988765 58999999999999752 000
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
...+.. ...+.+..++++.++...++
T Consensus 143 ------------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 143 ------------------------LIELDK------------------------------CKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp ------------------------HHHHHT------------------------------TTCCCCCHHHHHHHHHHHTC
T ss_pred ------------------------hhhhcc------------------------------cccccCCHHHHHHHHHhcCC
Confidence 000100 01233455677788888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|++|||++|.||+++|+.+++.+..
T Consensus 169 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 169 ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999986643
No 37
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.2e-28 Score=213.74 Aligned_cols=163 Identities=25% Similarity=0.425 Sum_probs=137.7
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+++.|...+.++.+ ++..+.+..++..+.
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 73 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVK--------------------------- 73 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEE---------------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEE---------------------------
Confidence 3478999999999999999999999999888888887 555566655555445
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..+...++..
T Consensus 74 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 74 ----------------------------------------------------------LQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ----------------------------------------------------------EEEECHHHHHHCHHHHHHHHTT
T ss_pred ----------------------------------------------------------EEEEeCCChHHHHHHHHHHHcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~------------------------------- 142 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE------------------------------- 142 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-------------------------------
Confidence 9999999999999999999999999987642 5688888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 143 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 143 ------------------------------------------------------------ERVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHHTCEE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHcCCeE
Confidence 12233445667777889999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.||+++|+.+++.+
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999865
No 38
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-27 Score=210.31 Aligned_cols=167 Identities=27% Similarity=0.412 Sum_probs=137.4
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
|...+.+||+++|++|||||||+++|+.+.|...+.+++.+.+.+.+.+++..+.
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~------------------------- 77 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS------------------------- 77 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEE-------------------------
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEE-------------------------
Confidence 4456789999999999999999999999999888889888666666666666666
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++. ..++..++
T Consensus 78 ------------------------------------------------------------~~l~Dt~G~~~-~~~~~~~~ 96 (196)
T 2atv_A 78 ------------------------------------------------------------MEILDTAGQED-TIQREGHM 96 (196)
T ss_dssp ------------------------------------------------------------EEEEECCCCCC-CHHHHHHH
T ss_pred ------------------------------------------------------------EEEEECCCCCc-ccchhhhh
Confidence 99999999988 77888999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+..
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~----------------------------- 146 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH----------------------------- 146 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG-----------------------------
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc-----------------------------
Confidence 999999999999999999999999998887642 24678888888888764
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 147 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 164 (196)
T 2atv_A 147 --------------------------------------------------------------SRQVSTEEGEKLATELAC 164 (196)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHHHTS
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHhCC
Confidence 122233455666777789
Q ss_pred eEEEeccCCCc-CHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNY-NIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~-nv~elf~~i~~~~~ 349 (373)
+|++|||++|. ||+++|+.+++.+.
T Consensus 165 ~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 165 AFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp EEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 99999999999 99999999998653
No 39
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.96 E-value=3.8e-28 Score=206.53 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=111.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|++..+. ...++.+..+.+.+.+++..+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEAS------------------------------ 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEE------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEE------------------------------
Confidence 589999999999999999999865543 3344555555555666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.|..++..+++.+|+
T Consensus 51 -------------------------------------------------------~~i~D~~g~~~~~~~~~~~~~~~~~ 75 (166)
T 3q72_A 51 -------------------------------------------------------LMVYDIWEQDGGRWLPGHCMAMGDA 75 (166)
T ss_dssp -------------------------------------------------------EEEEECC---------------CCE
T ss_pred -------------------------------------------------------EEEEECCCCccchhhhhhhhhhCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+|+.+..|+..+..... ..++|+++||||+|+.+
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~---------------------------------- 120 (166)
T 3q72_A 76 YVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR---------------------------------- 120 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCS----------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccc----------------------------------
Confidence 9999999999999999999998876531 25678888888888764
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
.+.+..++++.++...+++|++|
T Consensus 121 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 143 (166)
T 3q72_A 121 ---------------------------------------------------------SREVSVDEGRACAVVFDCKFIET 143 (166)
T ss_dssp ---------------------------------------------------------SCCSCHHHHHHHHHHTTCEEEEC
T ss_pred ---------------------------------------------------------ccccCHHHHHHHHHHhCCcEEEe
Confidence 12234455677778889999999
Q ss_pred ccCCCcCHHHHHHHHHHHhh
Q psy16673 330 SAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~~ 349 (373)
||++|.||+++|+.+++.+.
T Consensus 144 Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998654
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.9e-28 Score=210.83 Aligned_cols=165 Identities=25% Similarity=0.401 Sum_probs=135.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+|+|++|||||||+++|+++.|...+.++.+ ++..+.+.+++..+.
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 73 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK------------------------- 73 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEE-------------------------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEE-------------------------
Confidence 345689999999999999999999999998877888877 444455555544444
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 74 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 93 (192)
T 2fg5_A 74 ------------------------------------------------------------FLIWDTAGQERFHSLAPMYY 93 (192)
T ss_dssp ------------------------------------------------------------EEEEEECCSGGGGGGTHHHH
T ss_pred ------------------------------------------------------------EEEEcCCCchhhHhhhHHhh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+.+
T Consensus 94 ~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~----------------------------- 142 (192)
T 2fg5_A 94 RGSAAAVIVYDITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSD----------------------------- 142 (192)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGG-----------------------------
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccc-----------------------------
Confidence 99999999999999999999999999988764 24688888888888863
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.+++..++
T Consensus 143 --------------------------------------------------------------~~~v~~~~~~~~~~~~~~ 160 (192)
T 2fg5_A 143 --------------------------------------------------------------IREVPLKDAKEYAESIGA 160 (192)
T ss_dssp --------------------------------------------------------------GCCSCHHHHHHHHHTTTC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 111233455666777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999854
No 41
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=211.32 Aligned_cols=167 Identities=26% Similarity=0.481 Sum_probs=140.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+|+|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 63 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ--------------------------- 63 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEE---------------------------
Confidence 45579999999999999999999999999888888888766666666666556
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 64 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 85 (206)
T 2bov_A 64 ----------------------------------------------------------IDILDTAGQEDYAAIRDNYFRS 85 (206)
T ss_dssp ----------------------------------------------------------EEEEECCCTTCCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEcCCChhhhHHHHHHHHhh
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++||||+|+.+.
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~------------------------------ 134 (206)
T 2bov_A 86 GEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK------------------------------ 134 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGG------------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCcccc------------------------------
Confidence 9999999999999999999999999887652 246888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 135 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 153 (206)
T 2bov_A 135 -------------------------------------------------------------RQVSVEEAKNRAEQWNVNY 153 (206)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------ccccHHHHHHHHHHhCCeE
Confidence 1123344556666678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.+++.+..
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987644
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.3e-27 Score=205.46 Aligned_cols=164 Identities=25% Similarity=0.393 Sum_probs=137.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 65 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK-------------------------- 65 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEE--------------------------
Confidence 44579999999999999999999999999888888877 555666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.+..++..++.
T Consensus 66 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 86 (179)
T 1z0f_A 66 -----------------------------------------------------------LQIWDTAGQERFRAVTRSYYR 86 (179)
T ss_dssp -----------------------------------------------------------EEEEECTTGGGTCHHHHHHHH
T ss_pred -----------------------------------------------------------EEEEECCCChHhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+
T Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------------------------------ 134 (179)
T 1z0f_A 87 GAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA------------------------------ 134 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG------------------------------
T ss_pred cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc------------------------------
Confidence 99999999999999999999999998887642 4678888888888754
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 135 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 153 (179)
T 1z0f_A 135 -------------------------------------------------------------QRDVTYEEAKQFAEENGLL 153 (179)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCE
Confidence 1112334556666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999854
No 43
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.3e-28 Score=209.49 Aligned_cols=168 Identities=30% Similarity=0.458 Sum_probs=138.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+++.+...+.++.+ ++....+.+++..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 59 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVK-------------------------- 59 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEE--------------------------
Confidence 44579999999999999999999999988877777776 556666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..+...++.
T Consensus 60 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 80 (181)
T 3tw8_B 60 -----------------------------------------------------------LQIWDTAGQERFRTITSTYYR 80 (181)
T ss_dssp -----------------------------------------------------------EEEEEETTGGGCSSCCGGGGT
T ss_pred -----------------------------------------------------------EEEEcCCCchhhhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+++.+..|+..+.... +.+|+++||||+|+.+.
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~----------------------------- 128 (181)
T 3tw8_B 81 GTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER----------------------------- 128 (181)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh-----------------------------
Confidence 9999999999999999999999999988764 57888888888887641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..+++..++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (181)
T 3tw8_B 129 --------------------------------------------------------------KVVETEDAYKFAGQMGIQ 146 (181)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCC
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112334556677777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhhhcc
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQILTT 353 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~~~~ 353 (373)
|++|||++|.||+++|+.+.+.+...+.
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 147 LFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999997654443
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=2.1e-27 Score=205.48 Aligned_cols=167 Identities=26% Similarity=0.481 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 67 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ--------------------------- 67 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999888888888666666666666555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 68 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 89 (187)
T 2a9k_A 68 ----------------------------------------------------------IDILDTAGQEDYAAIRDNYFRS 89 (187)
T ss_dssp ----------------------------------------------------------EEEEECCCTTCCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEECCCCcccHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+.
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~------------------------------ 138 (187)
T 2a9k_A 90 GEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK------------------------------ 138 (187)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc------------------------------
Confidence 9999999999999999999999999887752 236888888888887641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++.+.+++.++++|
T Consensus 139 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 157 (187)
T 2a9k_A 139 -------------------------------------------------------------RQVSVEEAKNRAEQWNVNY 157 (187)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------CccCHHHHHHHHHHcCCeE
Confidence 1123344566667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|||++|.||+++|+.|++.+..
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 158 VETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999986643
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1e-27 Score=204.09 Aligned_cols=163 Identities=29% Similarity=0.417 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 88 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (373)
.+||+++|++|||||||+++|+.+.|...+.++.+ ++....+.+++..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 53 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVK----------------------------- 53 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEE-----------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE-----------------------------
Confidence 58999999999999999999999999888888877 455566666665555
Q ss_pred eeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcC
Q psy16673 89 YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAH 168 (373)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~ 168 (373)
+.+||++|++.|..++..+++++|
T Consensus 54 --------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~d 77 (170)
T 1ek0_A 54 --------------------------------------------------------FEIWDTAGQERFASLAPXYYRNAQ 77 (170)
T ss_dssp --------------------------------------------------------EEEEEECCSGGGGGGHHHHHTTCS
T ss_pred --------------------------------------------------------EEEEECCCChhhhhhhhhhhccCc
Confidence 999999999999999999999999
Q ss_pred eEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccccc
Q psy16673 169 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAH 248 (373)
Q Consensus 169 ~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~ 248 (373)
++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.....
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~------------------------------ 125 (170)
T 1ek0_A 78 AALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQEGG------------------------------ 125 (170)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGSSC------------------------------
T ss_pred EEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccccc------------------------------
Confidence 99999999999999999999999887642 5789999999999874200
Q ss_pred EEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 249 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 249 ~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
.+.+..++++.++...+++|++
T Consensus 126 ----------------------------------------------------------~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 126 ----------------------------------------------------------ERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp ----------------------------------------------------------CCCSCHHHHHHHHHHHTCEEEE
T ss_pred ----------------------------------------------------------ccCCCHHHHHHHHHHcCCEEEE
Confidence 0122344556677778899999
Q ss_pred eccCCCcCHHHHHHHHHHH
Q psy16673 329 CSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 329 ~SAktg~nv~elf~~i~~~ 347 (373)
|||++|.|++++|+.+++.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999874
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.95 E-value=1.6e-27 Score=206.65 Aligned_cols=164 Identities=27% Similarity=0.443 Sum_probs=137.9
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 60 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK--------------------------- 60 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEE---------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEE---------------------------
Confidence 4579999999999999999999999999888888877 556666666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.|..++..++..
T Consensus 61 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 61 ----------------------------------------------------------LQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGHHHHHTTSTT
T ss_pred ----------------------------------------------------------EEEEeCCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+...
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~------------------------------ 130 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDAD------------------------------ 130 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccc------------------------------
Confidence 9999999999999999999999998877642 57888888888888641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+...+++.++...+++|
T Consensus 131 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 149 (186)
T 2bme_A 131 -------------------------------------------------------------REVTFLEASRFAQENELMF 149 (186)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1122334556677788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 150 LETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 47
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.95 E-value=1.4e-27 Score=203.37 Aligned_cols=163 Identities=26% Similarity=0.368 Sum_probs=136.6
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+.+||+++|++|||||||+++|+++.|...+.++.+ ++..+.+.+.+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 56 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHK--------------------------- 56 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEE---------------------------
Confidence 4578999999999999999999999998888888877 455566666665555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..+...++.+
T Consensus 57 ----------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~ 78 (170)
T 1z0j_A 57 ----------------------------------------------------------FLIWDTAGLERFRALAPMYYRG 78 (170)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGGGGTHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCchhhhcccHhhCcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... .+.+|+++||||+|+.+.
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~iilv~nK~Dl~~~------------------------------ 126 (170)
T 1z0j_A 79 SAAAIIVYDITKEETFSTLKNWVRELRQHG--PPSIVVAIAGNKCDLTDV------------------------------ 126 (170)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CTTSEEEEEEECTTCGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECCccccc------------------------------
Confidence 999999999999999999999999988763 257888888888888641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++++.++...+++|
T Consensus 127 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 127 -------------------------------------------------------------REVMERDAKDYADSIHAIF 145 (170)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1123344566667778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.|++++|+.+++.+
T Consensus 146 ~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 146 VETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999854
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=209.64 Aligned_cols=122 Identities=25% Similarity=0.507 Sum_probs=98.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 76 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIR-------------------------- 76 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEE--------------------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEE--------------------------
Confidence 44578999999999999999999999988887778776 666666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 77 -----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~ 97 (192)
T 2il1_A 77 -----------------------------------------------------------LQIWDTAGQERFNSITSAYYR 97 (192)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGHHHHHHHHH
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+
T Consensus 98 ~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 98 SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 99999999999999999999999988877642 4688888888888864
No 49
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-28 Score=215.28 Aligned_cols=175 Identities=22% Similarity=0.387 Sum_probs=141.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.+|+.+.+++.+.+++..+.
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 77 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE--------------------------- 77 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEE---------------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999988889888666666665555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++.+
T Consensus 78 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 78 ----------------------------------------------------------LSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ----------------------------------------------------------EEEEEECCSGGGTTTGGGGCTT
T ss_pred ----------------------------------------------------------EEEEeCCCcHhhhHHHHhhccC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+.++..
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~--------------------------- 149 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLRTDVS--------------------------- 149 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTCEEEEEEECGGGGGCHH---------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEEechhhccchh---------------------------
Confidence 9999999999999999999 68999988765 5799999999999974200
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC-C
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-F 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~-~ 324 (373)
...++.. ...+.++.++++.+++..+ +
T Consensus 150 ----------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~ 177 (205)
T 1gwn_A 150 ----------------------TLVELSN------------------------------HRQTPVSYDQGANMAKQIGAA 177 (205)
T ss_dssp ----------------------HHHHHHT------------------------------TTCCCCCHHHHHHHHHHHTCS
T ss_pred ----------------------hhhhhcc------------------------------cccCCCCHHHHHHHHHHcCCC
Confidence 0001100 0123345667788888777 7
Q ss_pred eEEEeccC-CCcCHHHHHHHHHHHh
Q psy16673 325 QLLECSAK-DNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 ~~~E~SAk-tg~nv~elf~~i~~~~ 348 (373)
+|+||||+ +|.||+++|+.+++.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHH
Confidence 99999999 6899999999999864
No 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.95 E-value=8.4e-28 Score=208.07 Aligned_cols=174 Identities=25% Similarity=0.467 Sum_probs=144.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 54 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN---------------------------- 54 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEE----------------------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEE----------------------------
Confidence 3578999999999999999999999999988889988777777777766666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++..+
T Consensus 55 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 77 (186)
T 1mh1_A 55 ---------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQT 77 (186)
T ss_dssp ---------------------------------------------------------EEEECCCCSGGGTTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHhccCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. ..
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~--------------------------- 126 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD--------------------------- 126 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTSCEEEEEECHHHHTC-HH---------------------------
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhC---CCCCEEEEeEccccccc-ch---------------------------
Confidence 9999999999999999997 6999888764 48999999999999752 00
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
..+.+.. ...+.++.++++.+++..++ +
T Consensus 127 ---------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 155 (186)
T 1mh1_A 127 ---------------------TIEKLKE------------------------------KKLTPITYPQGLAMAKEIGAVK 155 (186)
T ss_dssp ---------------------HHHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ---------------------hhhhhcc------------------------------cccccCCHHHHHHHHHhcCCcE
Confidence 0001110 01233456677888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 156 YLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999865
No 51
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.95 E-value=6.7e-28 Score=213.06 Aligned_cols=165 Identities=29% Similarity=0.485 Sum_probs=138.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK-------------------------- 58 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999999888888887 555666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (206)
T 2bcg_Y 59 -----------------------------------------------------------LQIWDTAGQERFRTITSSYYR 79 (206)
T ss_dssp -----------------------------------------------------------EEEECCTTTTTTTCCCGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCChHHHHHHHHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+.+.
T Consensus 80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~----------------------------- 128 (206)
T 2bcg_Y 80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKDK----------------------------- 128 (206)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTTT-----------------------------
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCccc-----------------------------
Confidence 99999999999999999999999999887642 56888888999988641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (206)
T 2bcg_Y 129 --------------------------------------------------------------RVVEYDVAKEFADANKMP 146 (206)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCC
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCe
Confidence 112233455666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.+++.+.
T Consensus 147 ~~~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 147 FLETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998664
No 52
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.95 E-value=1.3e-27 Score=208.29 Aligned_cols=164 Identities=26% Similarity=0.441 Sum_probs=135.9
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+..++..+.
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 72 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIK-------------------------- 72 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEE--------------------------
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEE--------------------------
Confidence 44579999999999999999999999999887778776 444455555555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 73 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 73 -----------------------------------------------------------LQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp -----------------------------------------------------------EEEEECCSCCSSCCSGGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHhhhHHHhcc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+.+.
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 142 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDE----------------------------- 142 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGG-----------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccc-----------------------------
Confidence 9999999999999999999999999988764 246888888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.+++..+++
T Consensus 143 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 160 (189)
T 2gf9_A 143 --------------------------------------------------------------RVVPAEDGRRLADDLGFE 160 (189)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCE
T ss_pred --------------------------------------------------------------cCCCHHHHHHHHHHcCCe
Confidence 112234456667777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 161 ~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 161 FFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999864
No 53
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=7.3e-28 Score=214.63 Aligned_cols=175 Identities=23% Similarity=0.450 Sum_probs=124.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 83 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH---------------------------- 83 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEE----------------------------
Confidence 4579999999999999999999999999888888887766666666666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..++.++
T Consensus 84 ---------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~~ 106 (214)
T 2j1l_A 84 ---------------------------------------------------------LHIWDTAGQDDYDRLRPLFYPDA 106 (214)
T ss_dssp ---------------------------------------------------------EEEEEC---------------CE
T ss_pred ---------------------------------------------------------EEEEECCCchhhhHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+... +..
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~-------------------------- 156 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD-KSL-------------------------- 156 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC-HHH--------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc-chh--------------------------
Confidence 9999999999999999997 6999888764 57999999999999752 100
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
.+.+.. ...+.++.++++.+++..++ +
T Consensus 157 ----------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 157 ----------------------VNKLRR------------------------------NGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp ----------------------HHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ----------------------hhhhcc------------------------------cccCcccHHHHHHHHHhcCCCE
Confidence 000100 01234566778888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+||||++|.||+++|+.+++.+.
T Consensus 185 ~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 185 YLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999764
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.95 E-value=1.3e-27 Score=203.24 Aligned_cols=162 Identities=27% Similarity=0.466 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+++|++|||||||+++|+++.+...+.++++ ++..+.+.+++..+.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 55 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVR--------------------------- 55 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEE---------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEE---------------------------
Confidence 3578999999999999999999999999888888887 666677766666666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 56 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 77 (168)
T 1z2a_A 56 ----------------------------------------------------------LMLWDTAGQEEFDAITKAYYRG 77 (168)
T ss_dssp ----------------------------------------------------------EEEECCTTGGGTTCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCcHhHHHHHHHHhcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... ...|+++|+||+|+.+.
T Consensus 78 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~------------------------------ 124 (168)
T 1z2a_A 78 AQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD------------------------------ 124 (168)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc------------------------------
Confidence 999999999999999999999999988765 57889999999998641
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.+..++.+.+++..+++|
T Consensus 125 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 143 (168)
T 1z2a_A 125 -------------------------------------------------------------SCIKNEEAEGLAKRLKLRF 143 (168)
T ss_dssp -------------------------------------------------------------CSSCHHHHHHHHHHHTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCeE
Confidence 1122334455666678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.|++++|+.+++.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999854
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=208.15 Aligned_cols=164 Identities=27% Similarity=0.419 Sum_probs=136.8
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++.++.+.+++..+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 75 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK-------------------------- 75 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEE--------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE--------------------------
Confidence 34479999999999999999999999999888888876 556666666666555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|+++|..++..++.
T Consensus 76 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 76 -----------------------------------------------------------AQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp -----------------------------------------------------------EEEEEESCCCTTCTTHHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhhhhHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++|+||+|+...
T Consensus 97 ~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 145 (193)
T 2oil_A 97 GAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQA----------------------------- 145 (193)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGG-----------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCcccc-----------------------------
Confidence 9999999999999999999999999887653 256788888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 146 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 146 --------------------------------------------------------------REVPTEEARMFAENNGLL 163 (193)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHTTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHcCCE
Confidence 112234456666777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.|++.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999865
No 56
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=210.89 Aligned_cols=164 Identities=27% Similarity=0.457 Sum_probs=127.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--------------------------- 75 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK--------------------------- 75 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeE---------------------------
Confidence 4579999999999999999999999999888888877 566666666666566
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++..
T Consensus 76 ----------------------------------------------------------l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 76 ----------------------------------------------------------LQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ----------------------------------------------------------EEEECCTTHHHHSCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEcCCCcHhHHHHHHHHhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++||||+|+...
T Consensus 98 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~------------------------------ 145 (200)
T 2o52_A 98 AAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPE------------------------------ 145 (200)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGG------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc------------------------------
Confidence 9999999999999999999999998877642 56888888888888541
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+.++..+++.++...+++|
T Consensus 146 -------------------------------------------------------------~~v~~~~~~~~~~~~~~~~ 164 (200)
T 2o52_A 146 -------------------------------------------------------------REVTFLEASRFAQENELMF 164 (200)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHTTCEE
T ss_pred -------------------------------------------------------------cccCHHHHHHHHHHcCCEE
Confidence 1122334556667788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.+++.+.
T Consensus 165 ~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 165 LETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998654
No 57
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-27 Score=209.23 Aligned_cols=168 Identities=37% Similarity=0.590 Sum_probs=138.4
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
....+||+++|++|||||||+++|+.+.|...+.++++..+...+..++..+.
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 57 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCT--------------------------- 57 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEE---------------------------
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEE---------------------------
Confidence 34579999999999999999999999999888888877665555555555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++..
T Consensus 58 ----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~ 79 (199)
T 2gf0_A 58 ----------------------------------------------------------LQITDTTGSHQFPAMQRLSISK 79 (199)
T ss_dssp ----------------------------------------------------------EEEEECCGGGSCHHHHHHHHHH
T ss_pred ----------------------------------------------------------EEEEeCCChHHhHHHHHHhhcc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+.........+|+++||||+|+.. +.
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~--------------------------- 130 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--RE--------------------------- 130 (199)
T ss_dssp CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CS---------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cc---------------------------
Confidence 9999999999999999999999888887654335788999999999863 11
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
+..++++.++..++++|
T Consensus 131 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 147 (199)
T 2gf0_A 131 ---------------------------------------------------------------VDTREAQAVAQEWKCAF 147 (199)
T ss_dssp ---------------------------------------------------------------SCHHHHHHHHHHHTCEE
T ss_pred ---------------------------------------------------------------cCHHHHHHHHHHhCCeE
Confidence 12234455566678899
Q ss_pred EEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++|||++|.||+++|+.+++.+...
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEEecCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999976443
No 58
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.4e-27 Score=214.05 Aligned_cols=165 Identities=25% Similarity=0.407 Sum_probs=130.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 63 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIK-------------------------- 63 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEE--------------------------
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEE--------------------------
Confidence 35579999999999999999999999999888888887 566666776666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 64 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 84 (223)
T 3cpj_B 64 -----------------------------------------------------------AQIWDTAGQERYRAITSAYYR 84 (223)
T ss_dssp -----------------------------------------------------------EEEECCTTTTTTTCCCGGGTT
T ss_pred -----------------------------------------------------------EEEEECCCccchhhhHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+..
T Consensus 85 ~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~------------------------------ 132 (223)
T 3cpj_B 85 GAVGALIVYDISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAH------------------------------ 132 (223)
T ss_dssp TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGG------------------------------
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc------------------------------
Confidence 9999999999999999999999999987764 24678888888888764
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+.+..++++.+++..+++
T Consensus 133 -------------------------------------------------------------~~~v~~~~~~~~~~~~~~~ 151 (223)
T 3cpj_B 133 -------------------------------------------------------------LRAVPTEESKTFAQENQLL 151 (223)
T ss_dssp -------------------------------------------------------------GCCSCHHHHHHHHHHTTCE
T ss_pred -------------------------------------------------------------ccccCHHHHHHHHHHcCCE
Confidence 1122334556667778899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.|++.+.
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998653
No 59
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.95 E-value=2.5e-27 Score=208.73 Aligned_cols=165 Identities=26% Similarity=0.422 Sum_probs=137.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++..+.+..++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK-------------------------- 58 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEE--------------------------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEE--------------------------
Confidence 34579999999999999999999999999888888876 455556665555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (203)
T 1zbd_A 59 -----------------------------------------------------------LQIWDTAGLERYRTITTAYYR 79 (203)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGHHHHHTTGG
T ss_pred -----------------------------------------------------------EEEEECCCchhhcchHHHhhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+.... ...+|+++||||+|+.+.
T Consensus 80 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~----------------------------- 128 (203)
T 1zbd_A 80 GAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDE----------------------------- 128 (203)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTS-----------------------------
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCcc-----------------------------
Confidence 9999999999999999999999999988764 246888888888888641
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+.+..++++.++...+++
T Consensus 129 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 146 (203)
T 1zbd_A 129 --------------------------------------------------------------RVVSSERGRQLADHLGFE 146 (203)
T ss_dssp --------------------------------------------------------------CCSCHHHHHHHHHHHTCE
T ss_pred --------------------------------------------------------------cccCHHHHHHHHHHCCCe
Confidence 112234456667777899
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|++|||++|.||+++|+.|++.+.
T Consensus 147 ~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 147 FFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998653
No 60
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.7e-27 Score=205.16 Aligned_cols=165 Identities=28% Similarity=0.472 Sum_probs=127.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccC-Cceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYS-DRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~-~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|. ..+.++++ ++....+.+++..+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 61 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK------------------------- 61 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEE-------------------------
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEE-------------------------
Confidence 456799999999999999999999998885 45667766 444445555555555
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..++..++
T Consensus 62 ------------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~ 81 (180)
T 2g6b_A 62 ------------------------------------------------------------LQMWDTAGQERFRSVTHAYY 81 (180)
T ss_dssp ------------------------------------------------------------EEEEECCCC--------CCG
T ss_pred ------------------------------------------------------------EEEEeCCCcHHHHHHHHHHc
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+...
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~---------------------------- 131 (180)
T 2g6b_A 82 RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHE---------------------------- 131 (180)
T ss_dssp GGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSC----------------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCcc----------------------------
Confidence 999999999999999999999999999887643 57889999999998641
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
+.+..++++.+++..++
T Consensus 132 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 132 ---------------------------------------------------------------RVVKREDGEKLAKEYGL 148 (180)
T ss_dssp ---------------------------------------------------------------CCSCHHHHHHHHHHHTC
T ss_pred ---------------------------------------------------------------cccCHHHHHHHHHHcCC
Confidence 11223344556666788
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.+++.+.
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 149 PFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998654
No 61
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.95 E-value=3e-28 Score=241.45 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=138.8
Q ss_pred eeeecccc--------ccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCG--------DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g--------~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+| ++.+......++..+|++++|+|..+.-+.. ..|+...... ...|+++|+||+|+...
T Consensus 73 ~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~l~~----~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 73 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKILYR----TKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp CEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHHHTT----CCSCEEEEEECC-----
T ss_pred EEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHHHHH----cCCCEEEEEECccchhh
Confidence 99999999 7777888889999999999999987643332 3333333221 57899999999998640
Q ss_pred c-------------------------------------------------------------------------------
Q psy16673 217 H------------------------------------------------------------------------------- 217 (373)
Q Consensus 217 ~------------------------------------------------------------------------------- 217 (373)
.
T Consensus 147 ~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~ 226 (456)
T 4dcu_A 147 RANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV 226 (456)
T ss_dssp ----CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-
T ss_pred hhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCC
Confidence 0
Q ss_pred -----------cccccccceeeeccC----------CCCCchhhhh-ccccccEEEEEEecCCccchhhHHHHHHHHHhh
Q psy16673 218 -----------RAVHLEDVDILDTCG----------DLQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 275 (373)
Q Consensus 218 -----------r~~~~~~~~~~dtag----------~~~~~~~~~~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~ 275 (373)
-......+.+|||+| +++|..++.. +++.++++++|+|++++.+.++. .|...+.+
T Consensus 227 ~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~-~~~~~~~~- 304 (456)
T 4dcu_A 227 AGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE- 304 (456)
T ss_dssp -----CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-
T ss_pred CCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHH-HHHHHHHH-
Confidence 000001257999999 7888888776 78999999999999986654432 34444443
Q ss_pred ccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhc-----CCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 276 RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-----DFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 276 ~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~-----~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++| +++|+||||+...+.++.++.+..++.. +++|++|||++|.||+++|+.+.+.+..
T Consensus 305 ---~~~~------------~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 305 ---AGKA------------VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp ---TTCE------------EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---cCCC------------EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 2234 5599999999887776666555544333 6899999999999999999999998877
Q ss_pred hccCCCcccccc
Q psy16673 351 LTTNGDENSLKR 362 (373)
Q Consensus 351 ~~~~~~~~~~~~ 362 (373)
..++..+..+++
T Consensus 370 ~~~~~~t~~ln~ 381 (456)
T 4dcu_A 370 HSLRVQTNVLND 381 (456)
T ss_dssp HTCCCCHHHHHH
T ss_pred hcccCCHHHHHH
Confidence 776666555443
No 62
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.3e-27 Score=203.57 Aligned_cols=162 Identities=29% Similarity=0.533 Sum_probs=129.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+++|++|||||||+++|+++.|...+.++++ ++....+.+++..+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 53 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------------------------- 53 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEE----------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEE----------------------------
Confidence 468999999999999999999999999888888877 555555555555555
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..++..+
T Consensus 54 ---------------------------------------------------------~~l~D~~G~~~~~~~~~~~~~~~ 76 (170)
T 1g16_A 54 ---------------------------------------------------------LQIWDTAGQERFRTITTAYYRGA 76 (170)
T ss_dssp ---------------------------------------------------------EEEECCTTGGGTSCCCHHHHTTE
T ss_pred ---------------------------------------------------------EEEEeCCCChhhhhhHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.. +.
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~--~~---------------------------- 124 (170)
T 1g16_A 77 MGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMET--RV---------------------------- 124 (170)
T ss_dssp EEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTT--CC----------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCCc--Cc----------------------------
Confidence 999999999999999999999999887642 4788999999999842 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..++++.+++..+++|+
T Consensus 125 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 142 (170)
T 1g16_A 125 --------------------------------------------------------------VTADQGEALAKELGIPFI 142 (170)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHTCCEE
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHcCCeEE
Confidence 122344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.+.+.+.
T Consensus 143 ~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 143 ESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998653
No 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=2.4e-27 Score=209.02 Aligned_cols=176 Identities=25% Similarity=0.424 Sum_probs=142.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+....+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 74 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE-------------------------- 74 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEE--------------------------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEE--------------------------
Confidence 455689999999999999999999999999888888888665555666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 75 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 95 (201)
T 2gco_A 75 -----------------------------------------------------------LALWDTAGQEDYDRLRPLSYP 95 (201)
T ss_dssp -----------------------------------------------------------EEEECCCCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCchhHHHHHHHhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+... ..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~------------------------- 146 (201)
T 2gco_A 96 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRQD-EH------------------------- 146 (201)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGTTC-HH-------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEecHHhhcC-cc-------------------------
Confidence 99999999999999999999 67988888764 57999999999999752 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
..+.+... ..+.+..++++.+++..++
T Consensus 147 -----------------------~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 147 -----------------------TRRELAKM------------------------------KQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp -----------------------HHHHHHTT------------------------------TCCCCCHHHHHHHHHHTTC
T ss_pred -----------------------chhhhccc------------------------------ccCcCCHHHHHHHHHhCCC
Confidence 00011110 1123456677888888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999864
No 64
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.95 E-value=2.7e-27 Score=203.38 Aligned_cols=162 Identities=27% Similarity=0.549 Sum_probs=136.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+.+||+++|++|||||||+++|+.+.|...+.++++ +++.+.+.+++..+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 64 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVR---------------------------- 64 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEE----------------------------
Confidence 569999999999999999999999999888888877 666677776666666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..+...++.++
T Consensus 65 ---------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~ 87 (179)
T 2y8e_A 65 ---------------------------------------------------------LQLWDTAGQERFRSLIPSYIRDS 87 (179)
T ss_dssp ---------------------------------------------------------EEEEEECCSGGGGGGSHHHHHTC
T ss_pred ---------------------------------------------------------EEEEECCCcHHHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ..+|+++|+||+|+.+.
T Consensus 88 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~------------------------------- 134 (179)
T 2y8e_A 88 TVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSDK------------------------------- 134 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGGG-------------------------------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCccccc-------------------------------
Confidence 999999999999999999999998887642 57888888999888641
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+.+..++++.++...+++|+
T Consensus 135 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 154 (179)
T 2y8e_A 135 ------------------------------------------------------------RQVSTEEGERKAKELNVMFI 154 (179)
T ss_dssp ------------------------------------------------------------CCSCHHHHHHHHHHHTCEEE
T ss_pred ------------------------------------------------------------CcCCHHHHHHHHHHcCCeEE
Confidence 11223344555666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~ 348 (373)
+|||++|.|++++|+.+++.+
T Consensus 155 ~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 155 ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEBTTTTBSHHHHHHHHHHTC
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999843
No 65
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.95 E-value=1.9e-27 Score=207.35 Aligned_cols=166 Identities=27% Similarity=0.479 Sum_probs=135.4
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
...+.+||+++|++|||||||+++|+.+.|...+.++++ ++..+.+.+++..+.
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~------------------------- 70 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIK------------------------- 70 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEE-------------------------
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEE-------------------------
Confidence 345679999999999999999999999999888888877 666666766666566
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchh-HhHHhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFP-AMRRLS 163 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~-~~~~~~ 163 (373)
+.+|||+|++.|. .+...+
T Consensus 71 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 90 (189)
T 1z06_A 71 ------------------------------------------------------------IQLWDTAGQERFRKSMVQHY 90 (189)
T ss_dssp ------------------------------------------------------------EEEEECCCSHHHHTTTHHHH
T ss_pred ------------------------------------------------------------EEEEECCCchhhhhhhhHHH
Confidence 9999999999998 889999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
++.+|++++|||++++.+|+.+..|+..+..... ...+|+++|+||+|+.+
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~---------------------------- 141 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS---------------------------- 141 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG----------------------------
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc----------------------------
Confidence 9999999999999999999999999999887641 24678888888888754
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+.+..++++.++...+
T Consensus 142 ---------------------------------------------------------------~~~v~~~~~~~~~~~~~ 158 (189)
T 1z06_A 142 ---------------------------------------------------------------AIQVPTDLAQKFADTHS 158 (189)
T ss_dssp ---------------------------------------------------------------GCCSCHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------------cceeCHHHHHHHHHHcC
Confidence 12223445667777788
Q ss_pred CeEEEeccCCC---cCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDN---YNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg---~nv~elf~~i~~~~ 348 (373)
++|++|||++| .||+++|+.|++.+
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 99999999999 99999999998743
No 66
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=1.1e-27 Score=211.89 Aligned_cols=175 Identities=26% Similarity=0.481 Sum_probs=141.4
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 79 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN-------------------------- 79 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEE--------------------------
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEE--------------------------
Confidence 345689999999999999999999999999999999998877777777776666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..+...++.
T Consensus 80 -----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~ 100 (204)
T 4gzl_A 80 -----------------------------------------------------------LGLWDTAGLEDYDRLRPLSYP 100 (204)
T ss_dssp -----------------------------------------------------------EEEEEECCSGGGTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCchhhHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
++|++++|||++++.+|+.+. .|+..+.... ..+|+++||||+|+.+. +..
T Consensus 101 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~~------------------------ 152 (204)
T 4gzl_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KDT------------------------ 152 (204)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC-HHH------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc-hhh------------------------
Confidence 999999999999999999997 7999888765 67999999999999752 100
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+.. ...+.++.+++..+++..++
T Consensus 153 ------------------------~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~ 178 (204)
T 4gzl_A 153 ------------------------IEKLKE------------------------------KKLTPITYPQGLAMAKEIGA 178 (204)
T ss_dssp ------------------------HHHHHH------------------------------TTCCCCCHHHHHHHHHHTTC
T ss_pred ------------------------hhhhhc------------------------------cccccccHHHHHHHHHhcCC
Confidence 001111 01123456677888888885
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||||++|.||+++|+.+++.
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 179 VKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHH
Confidence 69999999999999999999984
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.95 E-value=6.6e-27 Score=200.95 Aligned_cols=123 Identities=25% Similarity=0.468 Sum_probs=102.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 57 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVT-------------------------- 57 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEE--------------------------
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEE--------------------------
Confidence 45679999999999999999999999999888888877 555666666666566
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.+..++..++.
T Consensus 58 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 78 (177)
T 1wms_A 58 -----------------------------------------------------------MQIWDTAGQERFRSLRTPFYR 78 (177)
T ss_dssp -----------------------------------------------------------EEEEECCCCGGGHHHHGGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCchhhhhhHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
.+|++++|||++++.+++.+..|+..+...... ...+|+++||||+|+.
T Consensus 79 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 79 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 999999999999999999999999998876531 1467888888888875
No 68
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=3.8e-27 Score=205.64 Aligned_cols=163 Identities=24% Similarity=0.370 Sum_probs=135.8
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+.+||+|+|++|||||||+++|+.+.|...+.++.+ ++..+.+.+++..+.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---------------------------- 65 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAK---------------------------- 65 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEE----------------------------
Confidence 468999999999999999999999999888888876 555566666666556
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++.|..++..+++.+
T Consensus 66 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 66 ---------------------------------------------------------LAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp ---------------------------------------------------------EEEEEECSSGGGCCSHHHHHTTC
T ss_pred ---------------------------------------------------------EEEEeCCCchhhhhhhHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 89 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~--~~---------------------------- 137 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKEN--RE---------------------------- 137 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSS--CC----------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcc--cc----------------------------
Confidence 999999999999999999999998876532 24688889999998843 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..+++..++...+++|+
T Consensus 138 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 155 (195)
T 1x3s_A 138 --------------------------------------------------------------VDRNEGLKFARKHSMLFI 155 (195)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHTTCEEE
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHcCCEEE
Confidence 122344556667788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|||++|.||+++|+.|++.+.
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998654
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=6.7e-27 Score=204.98 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=136.1
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccc
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLED 83 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (373)
|.....+||+|+|++|||||||+++|+++.|...+.++++ ++..+.+.+++........ ...
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~------~~~----------- 64 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN------NEK----------- 64 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccc------ccc-----------
Confidence 4566789999999999999999999999999888888887 5555655555433210000 000
Q ss_pred eeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhh
Q psy16673 84 VSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLS 163 (373)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~ 163 (373)
.......... .-... .... .........+.+.+|||+|++.|..+...+
T Consensus 65 ------------~~~~~~~~~~---~~~~~-~~~~---------------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 113 (208)
T 3clv_A 65 ------------NNNINSINDD---NNVII-TNQH---------------NNYNENLCNIKFDIWDTAGQERYASIVPLY 113 (208)
T ss_dssp ---------------------------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHH
T ss_pred ------------cccccccccc---ccccc-cccc---------------ccccCccceeEEEEEECCCcHHHHHHHHHH
Confidence 0000000000 00000 0000 000011122459999999999999999999
Q ss_pred hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhc
Q psy16673 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLS 243 (373)
Q Consensus 164 ~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s 243 (373)
+..+|++++|||++++.+++.+..|+..+.... .+|+++|+||+|+.. +
T Consensus 114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~piilv~NK~D~~~--~------------------------- 162 (208)
T 3clv_A 114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISS----NYIIILVANKIDKNK--F------------------------- 162 (208)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CCEEEEEEECTTCC---C-------------------------
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC----CCcEEEEEECCCccc--c-------------------------
Confidence 999999999999999999999999999988764 389999999999321 1
Q ss_pred cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcC
Q psy16673 244 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD 323 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~ 323 (373)
.+..++.+.++...+
T Consensus 163 -----------------------------------------------------------------~~~~~~~~~~~~~~~ 177 (208)
T 3clv_A 163 -----------------------------------------------------------------QVDILEVQKYAQDNN 177 (208)
T ss_dssp -----------------------------------------------------------------CSCHHHHHHHHHHTT
T ss_pred -----------------------------------------------------------------cCCHHHHHHHHHHcC
Confidence 112234455666678
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|++|||++|.||+++|+.|++.+
T Consensus 178 ~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 178 LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999865
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=4.4e-27 Score=202.62 Aligned_cols=124 Identities=27% Similarity=0.536 Sum_probs=91.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeec-ceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVG-AVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..+.+||+++|++|||||||+++|+.+.|...+.++++ +++...+.++ +..+.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 59 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT------------------------- 59 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEE-------------------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEE-------------------------
Confidence 45689999999999999999999999999888888886 6666655554 33333
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+||++|++.|..+...++
T Consensus 60 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 79 (182)
T 1ky3_A 60 ------------------------------------------------------------MQVWDTAGQERFQSLGVAFY 79 (182)
T ss_dssp ------------------------------------------------------------EEEECCC----------CCS
T ss_pred ------------------------------------------------------------EEEEECCCChHhhhhhHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|++++|||++++.+++.+..|+..+..... ....+|+++||||+|+..
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 80 RGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 999999999999999999999999999887652 125678888888888853
No 71
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=5.2e-27 Score=207.83 Aligned_cols=176 Identities=25% Similarity=0.426 Sum_probs=136.6
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
+....+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~-------------------------- 74 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVE-------------------------- 74 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEE--------------------------
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEE--------------------------
Confidence 345578999999999999999999999999888888888665555666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 75 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 95 (207)
T 2fv8_A 75 -----------------------------------------------------------LALWDTAGQEDYDRLRPLSYP 95 (207)
T ss_dssp -----------------------------------------------------------EEEEECTTCTTCTTTGGGGCT
T ss_pred -----------------------------------------------------------EEEEECCCcHHHHHHHHhhcC
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 166 TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.+|++++|||++++.+|+.+ ..|+..+.... +.+|+++||||+|+... ..
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~-~~------------------------- 146 (207)
T 2fv8_A 96 DTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPIILVANKKDLRSD-EH------------------------- 146 (207)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECGGGGGC-HH-------------------------
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhhhcc-cc-------------------------
Confidence 99999999999999999999 67998888764 57999999999999752 00
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
..+.+... ..+.+..++++.++...++
T Consensus 147 -----------------------~~~~~~~~------------------------------~~~~v~~~~~~~~~~~~~~ 173 (207)
T 2fv8_A 147 -----------------------VRTELARM------------------------------KQEPVRTDDGRAMAVRIQA 173 (207)
T ss_dssp -----------------------HHHHHHHT------------------------------TCCCCCHHHHHHHHHHTTC
T ss_pred -----------------------chhhhhhc------------------------------ccCCCCHHHHHHHHHhcCC
Confidence 00111111 0123455677888888887
Q ss_pred -eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 325 -QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 325 -~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|++|||++|.||+++|+.|++.+
T Consensus 174 ~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 174 YDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999865
No 72
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.95 E-value=7.6e-27 Score=203.17 Aligned_cols=175 Identities=23% Similarity=0.317 Sum_probs=133.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cce-eeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLY-SRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||+++|+.+.|...+.++++ ++. .+.+..++.....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~------------------------ 63 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA------------------------ 63 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCS------------------------
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccc------------------------
Confidence 34579999999999999999999999998887778776 333 3333333221000
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
......+.+.+||++|++.|..+...++
T Consensus 64 ----------------------------------------------------~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 91 (195)
T 3bc1_A 64 ----------------------------------------------------VGRGQRIHLQLWDTAGLERFRSLTTAFF 91 (195)
T ss_dssp ----------------------------------------------------SCCCEEEEEEEEEECCSGGGHHHHHHTT
T ss_pred ----------------------------------------------------cccCcEEEEEEEeCCCcHHHHHHHHHHH
Confidence 0000123399999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
..+|++++|||++++.+++.+..|+..+..... ...+|+++|+||+|+...
T Consensus 92 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~---------------------------- 142 (195)
T 3bc1_A 92 RDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQ---------------------------- 142 (195)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGG----------------------------
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc----------------------------
Confidence 999999999999999999999999999887642 246888888888887641
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
+.+..++++.++...++
T Consensus 143 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 143 ---------------------------------------------------------------RAVKEEEARELAEKYGI 159 (195)
T ss_dssp ---------------------------------------------------------------CCSCHHHHHHHHHHHTC
T ss_pred ---------------------------------------------------------------cccCHHHHHHHHHHcCC
Confidence 11223345556666788
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|++|||++|.||+++|+.|++.+.
T Consensus 160 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 160 PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998653
No 73
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=2.1e-27 Score=207.39 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=90.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCC------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHR 218 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r 218 (373)
+++|||+|++.|..++..+++++|++++|||++ +..+|+.+..|+.++.. ....+|+++||||+|+.+.
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~---~~~~~piilv~NK~Dl~~~-- 150 (198)
T 3t1o_A 76 FHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL---TLDDVPIVIQVNKRDLPDA-- 150 (198)
T ss_dssp EEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC---CTTSSCEEEEEECTTSTTC--
T ss_pred EEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc---ccCCCCEEEEEEchhcccc--
Confidence 999999999999999999999999999999999 56777788888777632 2367889999999998641
Q ss_pred ccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 219 AVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 219 ~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
T Consensus 151 -------------------------------------------------------------------------------- 150 (198)
T 3t1o_A 151 -------------------------------------------------------------------------------- 150 (198)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 299 YSTTCLESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 299 gnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+..++++.++...++ +|+||||++|.||+++|+.+++.+..
T Consensus 151 -----------~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 151 -----------LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -----------CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----------cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 123345566667788 99999999999999999999986643
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=2.2e-26 Score=194.61 Aligned_cols=161 Identities=30% Similarity=0.518 Sum_probs=135.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeeeee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 89 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (373)
.+||+++|++|||||||+++|+.+.+...+.+++.+.+.+.+..++..+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 52 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCL------------------------------ 52 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEE------------------------------
Confidence 47999999999999999999999999888888887666666666666555
Q ss_pred eccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhcCe
Q psy16673 90 CELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHA 169 (373)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~~~ 169 (373)
+.+||++|++.+..++..++..+|+
T Consensus 53 -------------------------------------------------------~~~~D~~G~~~~~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 53 -------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTGEG 77 (166)
T ss_dssp -------------------------------------------------------EEEEECCCCSSCCHHHHHHHHHCSE
T ss_pred -------------------------------------------------------EEEEECCCchhhhHHHHHhhccCCE
Confidence 9999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccccE
Q psy16673 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHA 249 (373)
Q Consensus 170 ~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~ 249 (373)
+++|||++++.+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~--~~------------------------------ 124 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA--RT------------------------------ 124 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC--CC------------------------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh--cc------------------------------
Confidence 9999999999999999999999887652 24689999999999864 10
Q ss_pred EEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEe
Q psy16673 250 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLEC 329 (373)
Q Consensus 250 ~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~ 329 (373)
+..++.+.+++..++++++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 125 ------------------------------------------------------------VESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp ------------------------------------------------------------SCHHHHHHHHHHHTCCEEEE
T ss_pred ------------------------------------------------------------cCHHHHHHHHHHcCCeEEEe
Confidence 11234455566678899999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.|++++|+.+++.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999854
No 75
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=1.2e-26 Score=202.13 Aligned_cols=165 Identities=29% Similarity=0.510 Sum_probs=127.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
.+.+||+++|++|||||||+++|+.+.+...+.+++.+.+...+.+++..+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 70 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL---------------------------- 70 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEE----------------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEE----------------------------
Confidence 4578999999999999999999999988888888877666666666666566
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.|..+...++..+
T Consensus 71 ---------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~~ 93 (190)
T 3con_A 71 ---------------------------------------------------------LDILDTAGQEEYSAMRDQYMRTG 93 (190)
T ss_dssp ---------------------------------------------------------EEEEECCC-----------CTTC
T ss_pred ---------------------------------------------------------EEEEECCChHHHHHHHHHhhCcC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
|++++|||+++..+++.+..|+..+..... ...+|+++|+||+|+.. +.
T Consensus 94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~--~~---------------------------- 142 (190)
T 3con_A 94 EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT--RT---------------------------- 142 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC--CC----------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc--cc----------------------------
Confidence 999999999999999999999999887652 24688999999999863 11
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
+..++.+.+++..+++|+
T Consensus 143 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 160 (190)
T 3con_A 143 --------------------------------------------------------------VDTKQAHELAKSYGIPFI 160 (190)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHTCCEE
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHcCCeEE
Confidence 122344556666788999
Q ss_pred EeccCCCcCHHHHHHHHHHHhhh
Q psy16673 328 ECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|||++|.|++++|+.|++.+..
T Consensus 161 ~~Sa~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 161 ETSAKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987643
No 76
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=6.5e-27 Score=208.38 Aligned_cols=175 Identities=23% Similarity=0.350 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.+|++ ++..+.+.+++....+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-------------------------- 76 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG-------------------------- 76 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------------------------------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccc--------------------------
Confidence 4579999999999999999999999999888888877 4545555544331000
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
. ......+.+.+|||+|++.|..++..++..
T Consensus 77 ----------------------------~---------------------~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 107 (217)
T 2f7s_A 77 ----------------------------S---------------------SGKAFKVHLQLWDTAGQERFRSLTTAFFRD 107 (217)
T ss_dssp ---------------------------------------------------CCEEEEEEEEEEEESHHHHHHHHHHHHTT
T ss_pred ----------------------------c---------------------ccCceeEEEEEEECCCcHhHHhHHHHHhcC
Confidence 0 000001239999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+++.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 108 ~d~iilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~~piilV~NK~Dl~~------------------------------- 155 (217)
T 2f7s_A 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANA-YCENPDIVLIGNKADLPD------------------------------- 155 (217)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHTCCCCC-TTTCCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CcCCCCEEEEEECCcccc-------------------------------
Confidence 999999999999999999999987665432 113566777777777653
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 156 ------------------------------------------------------------~~~v~~~~~~~~~~~~~~~~ 175 (217)
T 2f7s_A 156 ------------------------------------------------------------QREVNERQARELADKYGIPY 175 (217)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCCE
T ss_pred ------------------------------------------------------------ccccCHHHHHHHHHHCCCcE
Confidence 23334455667777788999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||++|.||+++|+.|++.+.
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 77
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.3e-26 Score=205.31 Aligned_cols=165 Identities=28% Similarity=0.516 Sum_probs=135.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+|+|++|||||||+++|+.+.|...+.++++ ++....+.+++..+.
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 70 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK-------------------------- 70 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEE--------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEE--------------------------
Confidence 34579999999999999999999999998887778777 555566666665555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..++.
T Consensus 71 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 71 -----------------------------------------------------------LQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp -----------------------------------------------------------EEEECCTTGGGGTCCCHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
.+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.. +.
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~--~~-------------------------- 141 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDMET--RV-------------------------- 141 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTCSS--CC--------------------------
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc--cc--------------------------
Confidence 99999999999999999999999999887642 4689999999999842 11
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
+..++++.++...+++
T Consensus 142 ----------------------------------------------------------------~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 142 ----------------------------------------------------------------VTADQGEALAKELGIP 157 (213)
T ss_dssp ----------------------------------------------------------------SCHHHHHHHHHHHTCC
T ss_pred ----------------------------------------------------------------cCHHHHHHHHHHcCCE
Confidence 1223345556667889
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|++|||++|.||+++|+.|++.+..
T Consensus 158 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 158 FIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999986643
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.94 E-value=2.1e-27 Score=209.46 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=102.7
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeecce--EEeeeeeEEeccCCccchhhhccc
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVGAV--TIKEIPIVVAGNKSDMTSHHRAVH 80 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 80 (373)
+....+||+|+|++|||||||+++|+++ .|...+.+|++ +++.+.+.+++. .+.
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~--------------------- 74 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE--------------------- 74 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEE---------------------
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEE---------------------
Confidence 4456799999999999999999999988 88888888887 777777777665 555
Q ss_pred ccceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhH
Q psy16673 81 LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMR 160 (373)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~ 160 (373)
+.+|||+|++.|..++
T Consensus 75 ----------------------------------------------------------------~~l~Dt~G~~~~~~~~ 90 (208)
T 2yc2_C 75 ----------------------------------------------------------------LFLLDTAGSDLYKEQI 90 (208)
T ss_dssp ----------------------------------------------------------------EEEEETTTTHHHHHHH
T ss_pred ----------------------------------------------------------------EEEEECCCcHHHHHHH
Confidence 9999999999999999
Q ss_pred HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccccccccccccceeeeccCCCCCchh
Q psy16673 161 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAM 239 (373)
Q Consensus 161 ~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~ 239 (373)
..++.++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+...
T Consensus 91 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~----------------------- 147 (208)
T 2yc2_C 91 SQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ----------------------- 147 (208)
T ss_dssp STTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----------------------------
T ss_pred HHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-----------------------
Confidence 99999999999999999999999999999999876420 136778888888887530
Q ss_pred hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 240 RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 240 ~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
.+.++.++++.++
T Consensus 148 -------------------------------------------------------------------~~~v~~~~~~~~~ 160 (208)
T 2yc2_C 148 -------------------------------------------------------------------RHQVRLDMAQDWA 160 (208)
T ss_dssp ---------------------------------------------------------------------CCCHHHHHHHH
T ss_pred -------------------------------------------------------------------hccCCHHHHHHHH
Confidence 1223445566777
Q ss_pred hhcCCeEEEeccCC-CcCHHHHHHHHHHHh
Q psy16673 320 QRQDFQLLECSAKD-NYNIKEVFRTFLTLS 348 (373)
Q Consensus 320 ~~~~~~~~E~SAkt-g~nv~elf~~i~~~~ 348 (373)
...+++|++|||++ |.||+++|+.+++.+
T Consensus 161 ~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 161 TTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 77889999999999 999999999999865
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=8.9e-27 Score=207.65 Aligned_cols=178 Identities=20% Similarity=0.251 Sum_probs=138.3
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceec-ceeeeeeecc-eEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVED-LYSRDFHVGA-VTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
....+||+|+|++|||||||+++|+++.|...+.++.+. .......... ..+.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~------------------------- 62 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK------------------------- 62 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEE-------------------------
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEE-------------------------
Confidence 445799999999999999999999998888877777763 2222222211 1133
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.+..+...++
T Consensus 63 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 82 (218)
T 4djt_A 63 ------------------------------------------------------------FNVWDTAGQEKKAVLKDVYY 82 (218)
T ss_dssp ------------------------------------------------------------EEEEEECSGGGTSCCCHHHH
T ss_pred ------------------------------------------------------------EEEEecCCchhhchHHHHHh
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSI 244 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~ 244 (373)
.++|++++|||++++.+++.+..|+..+..... ..+|+++||||+|+.+
T Consensus 83 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~----------------------------- 131 (218)
T 4djt_A 83 IGASGAILFFDVTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKN----------------------------- 131 (218)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC------------------------------
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc-----------------------------
Confidence 999999999999999999999999999987753 4578888888888764
Q ss_pred ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC
Q psy16673 245 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF 324 (373)
Q Consensus 245 ~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~ 324 (373)
.+.+..++++.++...++
T Consensus 132 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 149 (218)
T 4djt_A 132 --------------------------------------------------------------RQKISKKLVMEVLKGKNY 149 (218)
T ss_dssp -----------------------------------------------------------------CCHHHHHHHTTTCCC
T ss_pred --------------------------------------------------------------ccccCHHHHHHHHHHcCC
Confidence 112233455667777889
Q ss_pred eEEEeccCCCcCHHHHHHHHHHHhhhhccCCCcccccc
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKR 362 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~~~~~~~~~~~~~~~~ 362 (373)
+|++|||++|.||+++|+.+++.+...........++.
T Consensus 150 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 150 EYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp EEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHhcccccccccccCc
Confidence 99999999999999999999998766655555444443
No 80
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.94 E-value=1.9e-26 Score=203.42 Aligned_cols=123 Identities=25% Similarity=0.519 Sum_probs=103.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+|+|++|||||||+++|+++.|...+.++++ +++...+.+++..+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 58 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVT-------------------------- 58 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEE--------------------------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEE--------------------------
Confidence 45689999999999999999999999999888888876 666666666555555
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 59 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 79 (207)
T 1vg8_A 59 -----------------------------------------------------------MQIWDTAGQERFQSLGVAFYR 79 (207)
T ss_dssp -----------------------------------------------------------EEEEEECSSGGGSCSCCGGGT
T ss_pred -----------------------------------------------------------EEEEeCCCcHHHHHhHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc--CCCccEEEeccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQEIPIVVAGNKSDMT 214 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~--~~~~pi~ivgnK~Dl~ 214 (373)
++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+.
T Consensus 80 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 80 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 999999999999999999999999988776521 1367888888888875
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=3.9e-26 Score=193.66 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=62.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcC
Confidence 9999999999999999999999999999999999999999999988876532 225789999999999974
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=3.1e-26 Score=200.62 Aligned_cols=122 Identities=16% Similarity=0.226 Sum_probs=94.8
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCC-ceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
.....+||+|+|++|||||||+++|+++.|.. .+.+|++ +....+ ....+.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~--~~~~~~------------------------- 64 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETF--EKGRVA------------------------- 64 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEE--EETTEE-------------------------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEE--EeCCEE-------------------------
Confidence 45568899999999999999999999998887 7777776 111111 111222
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 65 ------------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 65 ------------------------------------------------------------FTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp ------------------------------------------------------------EEEEEECCSGGGGGGGGGGC
T ss_pred ------------------------------------------------------------EEEEECCCCHhHHHHHHHHH
Confidence 99999999999999999999
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc------CCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD------FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~------~~~~pi~ivgnK~Dl~~ 215 (373)
+++|++++|||++++.+|+.+..|+..+...... ...+|+++||||+|+..
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 9999999999999999999999998887654211 13789999999999975
No 83
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.3e-26 Score=201.49 Aligned_cols=121 Identities=18% Similarity=0.341 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc--ccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN--TYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~--~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.+||+|+|++|||||||+++|++. .|...+.+|++ ++....+.+...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~------------------------------ 51 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK------------------------------ 51 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC-----------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC------------------------------
Confidence 579999999999999999999974 56666677765 443333322100
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
....+.+.+|||+|+++|..+++.++++
T Consensus 52 ----------------------------------------------------~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 79 (184)
T 2zej_A 52 ----------------------------------------------------RKRDLVLNVWDFAGREEFYSTHPHFMTQ 79 (184)
T ss_dssp --------------------------------------------------------CEEEEEEECSHHHHHTTSHHHHHH
T ss_pred ----------------------------------------------------CCCceEEEEEecCCCHHHHHhhHHHccC
Confidence 0011229999999999999999999999
Q ss_pred cCeEEEEEeCCCh-hhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~-~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++++|||++++ .+|+.+..|+.++.... +.+|+++||||+|+.+
T Consensus 80 ~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSD 126 (184)
T ss_dssp SEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCC
T ss_pred CcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCccc
Confidence 9999999999997 68999999999887654 5789999999999864
No 84
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.94 E-value=1.5e-26 Score=206.82 Aligned_cols=121 Identities=26% Similarity=0.498 Sum_probs=107.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+.+.|...+.++.+ ++......+++..+.
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-------------------------- 65 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK-------------------------- 65 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEE--------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEE--------------------------
Confidence 45579999999999999999999999999888888887 556666666666666
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.|..++..+++
T Consensus 66 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 66 -----------------------------------------------------------FNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp -----------------------------------------------------------EEEEEECSGGGTSCCCHHHHT
T ss_pred -----------------------------------------------------------EEEEeCCChHHHhHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ..+|+++||||+|+.+
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 133 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSS
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccc
Confidence 9999999999999999999999999998875 5899999999999975
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=4.3e-26 Score=198.72 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=98.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..++.+||+|+|++|||||||+++|+++.|...+.+|++..+.. + ....+.
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~--~~~~~~-------------------------- 68 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-I--TKGNVT-------------------------- 68 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-E--EETTEE--------------------------
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-E--EeCCEE--------------------------
Confidence 34568999999999999999999999999887777777633221 1 111122
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|++.|..++..++.
T Consensus 69 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 69 -----------------------------------------------------------IKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp -----------------------------------------------------------EEEEEECCSHHHHTTHHHHHT
T ss_pred -----------------------------------------------------------EEEEECCCCHhHHHHHHHHHc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCCEEEEEECCCCcc
Confidence 9999999999999999999999988876532 125799999999999975
No 86
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.93 E-value=7.9e-28 Score=211.66 Aligned_cols=163 Identities=32% Similarity=0.509 Sum_probs=128.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||+++|+.+.|...+.+++. ++..+.+.+++..+.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 83 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK--------------------------- 83 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEE---------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEE---------------------------
Confidence 4479999999999999999999999998888878877 666677777776666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..+...++..
T Consensus 84 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 84 ----------------------------------------------------------LQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp ----------------------------------------------------------EEEECCTTCTTCCCCSCC--CC
T ss_pred ----------------------------------------------------------EEEEECCCcHhHHHHHHHHhhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
+|++++|||++++.+|+.+..|+..+..... ..+|+++|+||+|+.+. +
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~-~---------------------------- 154 (199)
T 3l0i_B 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK-K---------------------------- 154 (199)
T ss_dssp CSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC---C----------------------------
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc-c----------------------------
Confidence 9999999999999999999999998876532 46888888888887641 1
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+..++++.++...+++|
T Consensus 155 --------------------------------------------------------------~v~~~~~~~~~~~~~~~~ 172 (199)
T 3l0i_B 155 --------------------------------------------------------------VVDYTTAKEFADSLGIPF 172 (199)
T ss_dssp --------------------------------------------------------------CCCSCC-CHHHHTTTCCB
T ss_pred --------------------------------------------------------------cCCHHHHHHHHHHcCCeE
Confidence 122233455667778899
Q ss_pred EEeccCCCcCHHHHHHHHHHHh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|||++|.||+++|+.|++.+
T Consensus 173 ~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 173 LETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCCCC---HHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 87
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=9.4e-26 Score=195.56 Aligned_cols=70 Identities=16% Similarity=0.325 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEE-KLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCG-GGTTCCEEEEEECTTSTT
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcCccc
Confidence 9999999999999999999999999999999999999999999988775432 125789999999999975
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=1.5e-25 Score=194.93 Aligned_cols=119 Identities=15% Similarity=0.252 Sum_probs=93.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
.++.+||+++|++|||||||+++|+++.|. .+.||++ +..+.+.+++ +.
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~--------------------------- 61 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINN--TR--------------------------- 61 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETT--EE---------------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECC--EE---------------------------
Confidence 356899999999999999999999988876 5666665 2222232221 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++++..++..++.+
T Consensus 62 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 83 (187)
T 1zj6_A 62 ----------------------------------------------------------FLMWDIGGQESLRSSWNTYYTN 83 (187)
T ss_dssp ----------------------------------------------------------EEEEECCC----CGGGHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCCHhHHHHHHHHhcC
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhch-hhCCCeEEEEEECCCCcC
Confidence 999999999999999999999998887642 125799999999999974
No 89
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.4e-28 Score=214.05 Aligned_cols=174 Identities=25% Similarity=0.465 Sum_probs=139.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+.+.|...+.+++.+.+...+.+++..+.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--------------------------- 79 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN--------------------------- 79 (204)
Confidence 46789999999999999999999999999888888888766666655555555
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+++|||+|+++|..++..++.+
T Consensus 80 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 101 (204)
T 3th5_A 80 ----------------------------------------------------------LGLWDTAGQEDYDRLRPLSYPQ 101 (204)
Confidence 8999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+|++++|||++++.+|+.+. .|+..+.... +.+|+++||||+|+.+. +.....
T Consensus 102 ~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~---~~~piilv~NK~Dl~~~-~~~~~~---------------------- 155 (204)
T 3th5_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KDTIEK---------------------- 155 (204)
Confidence 99999999999999999997 7988887654 47999999999999752 100000
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF- 324 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~- 324 (373)
+. ....+.+..++++.+++..++
T Consensus 156 --------------------------~~------------------------------~~~~~~v~~~~~~~~~~~~~~~ 179 (204)
T 3th5_A 156 --------------------------LK------------------------------EKKLTPITYPQGLAMAKEIGAV 179 (204)
Confidence 00 001122344566777777887
Q ss_pred eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 325 QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 325 ~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|++|||++|.||+++|+.+++.
T Consensus 180 ~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 180 KYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 89999999999999999999874
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=7.3e-26 Score=198.67 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=91.6
Q ss_pred eeeeccccccchhHhH---HhhhhhcCeEEEEEeCCCh--hhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccc
Q psy16673 145 VDILDTCGDLQFPAMR---RLSIATAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRA 219 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~---~~~~~~~~~~i~v~dv~~~--~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~ 219 (373)
+++|||+|+++|..+. ..+++++|++++|||++++ .+++.+..|+..+.... +++|+++||||+|+.+....
T Consensus 71 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~piilv~nK~Dl~~~~~~ 147 (196)
T 3llu_A 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN---PDMNFEVFIHKVDGLSDDHK 147 (196)
T ss_dssp EEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC---TTCEEEEEEECGGGSCHHHH
T ss_pred EEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC---CCCcEEEEEeccccCchhhh
Confidence 9999999999998877 8999999999999999997 66666777777665433 68999999999999752000
Q ss_pred cccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 220 VHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 220 ~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
T Consensus 148 -------------------------------------------------------------------------------- 147 (196)
T 3llu_A 148 -------------------------------------------------------------------------------- 147 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhHHHHHhh----hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 300 STTCLESFQSVKCYFEEIREQ----RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~----~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+...+.+..++++.+++ ..+++|+||||++ .||+++|+.+++.
T Consensus 148 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 148 ----IETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred ----hHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 01123445566677777 7789999999999 9999999999984
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=1.5e-25 Score=196.28 Aligned_cols=120 Identities=15% Similarity=0.276 Sum_probs=90.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+.+.|.. +.||++ +..+.+... .
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~--~---------------------------- 72 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYK--N---------------------------- 72 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEET--T----------------------------
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEEC--C----------------------------
Confidence 35678999999999999999999999887753 455544 212222211 1
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+.+|||+|++.|..++..++.
T Consensus 73 ---------------------------------------------------------~~~~i~Dt~G~~~~~~~~~~~~~ 95 (192)
T 2b6h_A 73 ---------------------------------------------------------ICFTVWDVGGQDKIRPLWRHYFQ 95 (192)
T ss_dssp ---------------------------------------------------------EEEEEEECC-----CTTHHHHHH
T ss_pred ---------------------------------------------------------EEEEEEECCCCHhHHHHHHHHhc
Confidence 12999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 96 ~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 96 NTQGLIFVVDSNDRERVQESADELQKMLQED-ELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHhccc-ccCCCeEEEEEECCCCCC
Confidence 9999999999999999999999988876543 225799999999999975
No 92
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.93 E-value=1.9e-25 Score=220.28 Aligned_cols=297 Identities=15% Similarity=0.103 Sum_probs=167.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeeecceEEeeeeeEEe-ccCC-----------ccchhh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHVGAVTIKEIPIVVA-GNKS-----------DMTSHH 76 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~ 76 (373)
.+|+|+|++|||||||+|||++..+ +.+.+. .|++.......+.+..+.++ ..+. ...++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 76 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTL 76 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHH
Confidence 3799999999999999999996543 222221 23333344444445555444 1111 112344
Q ss_pred hcccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccc
Q psy16673 77 RAVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGD 153 (373)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~ 153 (373)
..++++|+++|++|.... .+.....+.+..++|+++|+||+|+..... .+. .+.
T Consensus 77 ~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~----~~~-~~~------------------ 133 (439)
T 1mky_A 77 NMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE----REV-KPE------------------ 133 (439)
T ss_dssp HHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH----HHT-HHH------------------
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH----HHH-HHH------------------
Confidence 578999999999996432 233344444556899999999999643100 000 000
Q ss_pred cchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHH-HHHHHHh-c------cCCCccEEEecc----cccccc------
Q psy16673 154 LQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQR-Q------DFQEIPIVVAGN----KSDMTS------ 215 (373)
Q Consensus 154 ~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~-~~i~~~~-~------~~~~~pi~ivgn----K~Dl~~------ 215 (373)
++...-+-++..+.......+.+..++ +.+.+.. . ....+.++++|. |+.|.+
T Consensus 134 ---------~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 134 ---------LYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp ---------HGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ---------HHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 000000011223333444444443333 2222111 0 011245667774 444432
Q ss_pred ----------------cccccccccceeeeccCCCCCch-----------hh-hhccccccEEEEEEecCCccchhhHHH
Q psy16673 216 ----------------HHRAVHLEDVDILDTCGDLQFPA-----------MR-RLSIATAHAFLLVYSTTCLESFQSVKC 267 (373)
Q Consensus 216 ----------------~~r~~~~~~~~~~dtag~~~~~~-----------~~-~~s~~~a~~~i~v~dvt~~~S~~~v~~ 267 (373)
..-......+.++||+|+.++.. ++ ..++..++++++++|++++.++++..
T Consensus 205 ~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~- 283 (439)
T 1mky_A 205 RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQR- 283 (439)
T ss_dssp TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHH-
T ss_pred ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHH-
Confidence 01112233467889999854432 22 24678899999999999988876532
Q ss_pred HHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhh-----hHHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 268 YFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-----YFEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 268 ~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~-----~~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
+...+.. . +.++++|+||||+...+.++. ...+.++...++++++|||++|.||+++|+
T Consensus 284 i~~~l~~----~------------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 284 MAGLMER----R------------GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp HHHHHHH----T------------TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred HHHHHHH----c------------CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 2222222 1 334569999999976554322 333455556678999999999999999999
Q ss_pred HHHHHhhhhccCCCccccc
Q psy16673 343 TFLTLSQILTTNGDENSLK 361 (373)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~ 361 (373)
.+.+.+.....+..++.++
T Consensus 348 ~i~~~~~~~~~~i~t~~ln 366 (439)
T 1mky_A 348 AMNLAYASYTTKVPSSAIN 366 (439)
T ss_dssp HHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHhhcccCCHHHHH
Confidence 9999887766666555544
No 93
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.93 E-value=1.3e-25 Score=197.59 Aligned_cols=119 Identities=17% Similarity=0.280 Sum_probs=89.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|. .+.||++.. ...+.+++ +.
T Consensus 22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~--------------------------- 70 (198)
T 1f6b_A 22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MT--------------------------- 70 (198)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EE---------------------------
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EE---------------------------
Confidence 356789999999999999999999988774 355665532 22333332 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.|..++..++++
T Consensus 71 ----------------------------------------------------------l~i~Dt~G~~~~~~~~~~~~~~ 92 (198)
T 1f6b_A 71 ----------------------------------------------------------FTTFDLGGHIQARRVWKNYLPA 92 (198)
T ss_dssp ----------------------------------------------------------EEEEEECC----CCGGGGGGGG
T ss_pred ----------------------------------------------------------EEEEECCCcHhhHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.+.. ....+|+++||||+|+..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPE 140 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccc
Confidence 999999999999999999999998887543 125799999999999964
No 94
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=1.2e-25 Score=199.76 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=90.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecce-EEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAV-TIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
.+..+||+++|++|||||||+++|+.+.|...+.++..+++. +.+++. .+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------------------------- 54 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGN--------------------------- 54 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCC---------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCcc---------------------------
Confidence 456789999999999999999999999888877655544332 222211 12
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhH-hHHhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPA-MRRLSI 164 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~-~~~~~~ 164 (373)
.+.+|||+|++.|.. ++..++
T Consensus 55 ----------------------------------------------------------~~~i~Dt~G~~~~~~~~~~~~~ 76 (214)
T 2fh5_B 55 ----------------------------------------------------------SLTLIDLPGHESLRFQLLDRFK 76 (214)
T ss_dssp ----------------------------------------------------------EEEEEECCCCHHHHHHHHHHHG
T ss_pred ----------------------------------------------------------EEEEEECCCChhHHHHHHHHHH
Confidence 299999999999988 888899
Q ss_pred hhcCeEEEEEeCCChh-hHHHHHH-HHHHHHHHhccCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLE-SFQSVKC-YFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~-s~~~l~~-~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++++++|||+++.. ++..+.. |...+.........+|+++||||+|+..
T Consensus 77 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 77 SSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp GGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred hhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 9999999999999853 4655555 4444444222235799999999999975
No 95
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.93 E-value=1.6e-25 Score=193.85 Aligned_cols=120 Identities=15% Similarity=0.235 Sum_probs=95.0
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
...+.+||+++|++|||||||+++|+++.| ..+.+|++.. .+.+.+++ ..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~-------------------------- 66 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINN--TR-------------------------- 66 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETT--EE--------------------------
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECC--EE--------------------------
Confidence 345689999999999999999999998887 5556666521 22222221 22
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+||++|+++|..++..++.
T Consensus 67 -----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~ 87 (181)
T 2h17_A 67 -----------------------------------------------------------FLMWDIGGQESLRSSWNTYYT 87 (181)
T ss_dssp -----------------------------------------------------------EEEEEESSSGGGTCGGGGGGT
T ss_pred -----------------------------------------------------------EEEEECCCCHhHHHHHHHHhc
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 88 NTEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp TCCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCccc
Confidence 9999999999999999999999988876542 125799999999999974
No 96
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.93 E-value=4.3e-25 Score=188.34 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+..++..++.++|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcC
Confidence 8999999999999999999999999999999999999999999888776542 125789999999999975
No 97
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.93 E-value=4e-25 Score=193.18 Aligned_cols=119 Identities=19% Similarity=0.348 Sum_probs=94.5
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
..+.+||+++|++|||||||+++|+++.|. .+.+|++.. ...+.+++ +.
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~--------------------------- 68 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IK--------------------------- 68 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EE---------------------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EE---------------------------
Confidence 355789999999999999999999988875 355555432 22333332 22
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+|||+|++.+..++..++++
T Consensus 69 ----------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 1m2o_B 69 ----------------------------------------------------------FTTFDLGGHIQARRLWKDYFPE 90 (190)
T ss_dssp ----------------------------------------------------------EEEEECCCSGGGTTSGGGGCTT
T ss_pred ----------------------------------------------------------EEEEECCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+..
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIA-ELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCCEEEEEECTTSTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcch-hhcCCCEEEEEECCCCcC
Confidence 999999999999999999999998887543 225799999999999974
No 98
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=192.00 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=96.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc-cCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT-YSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~-f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
..+.+||+++|++|||||||+++|+++. |...+.+|++ +..+.+.+++ +.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~-------------------------- 68 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LS-------------------------- 68 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CE--------------------------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EE--------------------------
Confidence 4458999999999999999999999877 5666666665 2223333221 22
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
+.+|||+|++.+..++..++.
T Consensus 69 -----------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~ 89 (190)
T 2h57_A 69 -----------------------------------------------------------FTVFDMSGQGRYRNLWEHYYK 89 (190)
T ss_dssp -----------------------------------------------------------EEEEEECCSTTTGGGGGGGGG
T ss_pred -----------------------------------------------------------EEEEECCCCHHHHHHHHHHHh
Confidence 999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc-CCCccEEEecccccccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~-~~~~pi~ivgnK~Dl~~ 215 (373)
++|++++|||++++.+|+.+..|+..+...... ...+|+++|+||+|+.+
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 999999999999999999999998888765310 14689999999999974
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=5.6e-25 Score=208.16 Aligned_cols=174 Identities=26% Similarity=0.477 Sum_probs=144.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
+..+||+++|++|||||||+++|+.+.|...+.+|+.+.+...+.+++..+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~---------------------------- 204 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVN---------------------------- 204 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEE----------------------------
Confidence 3468999999999999999999999999988999988777777777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++|||+|++.|..+...++..+
T Consensus 205 ---------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~~~~ 227 (332)
T 2wkq_A 205 ---------------------------------------------------------LGLWDTAGLEDYDRLRPLSYPQT 227 (332)
T ss_dssp ---------------------------------------------------------EEEEEECCCGGGTTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEeCCCchhhhHHHHHhccCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHH-HHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 168 HAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~-~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
|++++|||++++.+|+.+. .|+..+.... ..+|+++||||+|+.+. ..
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~-~~--------------------------- 276 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD-KD--------------------------- 276 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC---TTSCEEEEEECHHHHTC-HH---------------------------
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhC---CCCcEEEEEEchhcccc-cc---------------------------
Confidence 9999999999999999997 6998888765 48999999999999752 00
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCC-e
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF-Q 325 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~ 325 (373)
..+.+.. ...+.++.++++.++...++ +
T Consensus 277 ---------------------~~~~~~~------------------------------~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 277 ---------------------TIEKLKE------------------------------KKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp ---------------------HHHHHHH------------------------------TTCCCCCHHHHHHHHHHTTCSE
T ss_pred ---------------------hhhhccc------------------------------cccccccHHHHHHHHHHcCCcE
Confidence 0001110 01234466778888888887 9
Q ss_pred EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|++|||++|.||+++|+.+++.+
T Consensus 306 ~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 306 YLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999864
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.92 E-value=1.7e-24 Score=190.31 Aligned_cols=164 Identities=29% Similarity=0.459 Sum_probs=133.5
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSE 86 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (373)
...+||+|+|++|||||||++++++..|...+.++++ ++....+.+++..+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~--------------------------- 55 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK--------------------------- 55 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEE---------------------------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEE---------------------------
Confidence 4578999999999999999999999999888888876 566677777777666
Q ss_pred eeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhh
Q psy16673 87 WLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIAT 166 (373)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~ 166 (373)
+.+||++|++.+..+...++..
T Consensus 56 ----------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~ 77 (199)
T 2f9l_A 56 ----------------------------------------------------------AQIWDTAGQERYRRITSAYYRG 77 (199)
T ss_dssp ----------------------------------------------------------EEEEECSSGGGTTCCCHHHHTT
T ss_pred ----------------------------------------------------------EEEEECCCchhhhhhhHHHHhc
Confidence 9999999999999888899999
Q ss_pred cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhcccc
Q psy16673 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIAT 246 (373)
Q Consensus 167 ~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~ 246 (373)
++++++|||+++..+|+.+..|+..+.... ....|+++++||+|+..
T Consensus 78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~------------------------------- 124 (199)
T 2f9l_A 78 AVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH------------------------------- 124 (199)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG-------------------------------
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc-------------------------------
Confidence 999999999999999999999988776542 24678888888888754
Q ss_pred ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeE
Q psy16673 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326 (373)
Q Consensus 247 a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~ 326 (373)
.+.+..++++.++...+++|
T Consensus 125 ------------------------------------------------------------~~~~~~~~a~~l~~~~~~~~ 144 (199)
T 2f9l_A 125 ------------------------------------------------------------LRAVPTDEARAFAEKNNLSF 144 (199)
T ss_dssp ------------------------------------------------------------GCCSCHHHHHHHHHHTTCEE
T ss_pred ------------------------------------------------------------ccCcCHHHHHHHHHHcCCeE
Confidence 11122334566777778999
Q ss_pred EEeccCCCcCHHHHHHHHHHHhh
Q psy16673 327 LECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 327 ~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|||+++.|++++|+.+.+.+.
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998663
No 101
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.92 E-value=6.2e-25 Score=190.52 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=95.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+++. ...+.||++ ...+.+.++ ...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~--~~~---------------------------- 63 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHR--GFK---------------------------- 63 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEET--TEE----------------------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEEC--CEE----------------------------
Confidence 578999999999999999999999777 556666665 212222221 122
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+|||+|++++..++..++.++
T Consensus 64 ---------------------------------------------------------~~~~Dt~G~~~~~~~~~~~~~~~ 86 (186)
T 1ksh_A 64 ---------------------------------------------------------LNIWDVGGQKSLRSYWRNYFEST 86 (186)
T ss_dssp ---------------------------------------------------------EEEEEECCSHHHHTTGGGGCTTC
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhcCC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPG 133 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhCh-hcCCCcEEEEEeCccCCC
Confidence 99999999999999999999988876542 125799999999999975
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=201.81 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=97.0
Q ss_pred CCCCceEEEEEcCC---------CCChHHHHHHHHh---cccCCceecce-e-cceeeeeeecceEEeeeeeEEeccCCc
Q psy16673 6 CDNERIRLVILGGQ---------GVGKSCILKRFLF---NTYSDRYRSTV-E-DLYSRDFHVGAVTIKEIPIVVAGNKSD 71 (373)
Q Consensus 6 ~~~~~~kI~ivG~~---------~VGKSsL~~r~~~---~~f~~~~~~t~-~-d~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (373)
.....+||+|+|++ |||||||+++|+. +.|...+.+++ + ++..+.+.+++..+-+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~------- 87 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSR------- 87 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccc-------
Confidence 34567999999999 9999999999998 67777777876 3 66655555432211100000
Q ss_pred cchhhhcccccceeeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeec--
Q psy16673 72 MTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILD-- 149 (373)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D-- 149 (373)
...++..+.+++||
T Consensus 88 ----------------------------------------------------------------~~~~~~~~~l~i~D~~ 103 (255)
T 3c5h_A 88 ----------------------------------------------------------------SLEDCVECKMHIVEQT 103 (255)
T ss_dssp ------------------------------------------------------------------------CEEEEEEC
T ss_pred ----------------------------------------------------------------cccCCcEEEEEEEEcc
Confidence 00011223388888
Q ss_pred ---------------------cccccchhHhHHhhhh---------------------hcCeEEEEEeCCCh--hhHHHH
Q psy16673 150 ---------------------TCGDLQFPAMRRLSIA---------------------TAHAFLLVYSTTCL--ESFQSV 185 (373)
Q Consensus 150 ---------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~dv~~~--~s~~~l 185 (373)
++|+++|..++..++. ++|++++|||++++ .+|+.+
T Consensus 104 ~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~ 183 (255)
T 3c5h_A 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ 183 (255)
T ss_dssp CCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH
Confidence 7888888888888887 79999999999998 999999
Q ss_pred HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 186 KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 186 ~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..|+.++..... ...+|+++||||+|+..
T Consensus 184 ~~~l~~i~~~~~-~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 184 LKFVSNLYNQLA-KTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEEECGGGBC
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEEcccccc
Confidence 999998876521 14688888888888854
No 103
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.92 E-value=4.2e-25 Score=192.23 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=61.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED-ELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCS-TTTTCEEEEEEECTTSTT
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhh-hcCCCeEEEEEECCCCcC
Confidence 9999999999999999999999999999999999999999999888776532 125789999999999975
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=6.7e-25 Score=189.52 Aligned_cols=118 Identities=21% Similarity=0.344 Sum_probs=91.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCCceecceecceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
++.+||+++|++|||||||+++|+.+.+ ..+.+|++ +....+.+++ ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~--~~---------------------------- 63 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKN--LK---------------------------- 63 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETT--EE----------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECC--EE----------------------------
Confidence 5789999999999999999999998777 45555555 2122222221 22
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+.+||++|++.+..++..++.++
T Consensus 64 ---------------------------------------------------------~~i~Dt~G~~~~~~~~~~~~~~~ 86 (183)
T 1moz_A 64 ---------------------------------------------------------LNVWDLGGQTSIRPYWRCYYADT 86 (183)
T ss_dssp ---------------------------------------------------------EEEEEEC----CCTTGGGTTTTE
T ss_pred ---------------------------------------------------------EEEEECCCCHhHHHHHHHHhccC
Confidence 99999999999999999999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
|++++|||++++.+|+.+..|+..+.... ....+|+++|+||+|+.+
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 87 AAVIFVVDSTDKDRMSTASKELHLMLQEE-ELQDAALLVFANKQDQPG 133 (183)
T ss_dssp EEEEEEEETTCTTTHHHHHHHHHHHTTSS-TTSSCEEEEEEECTTSTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcCh-hhCCCeEEEEEECCCCCC
Confidence 99999999999999999999988876542 126789999999999974
No 105
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.91 E-value=1.7e-23 Score=183.08 Aligned_cols=161 Identities=30% Similarity=0.456 Sum_probs=134.2
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccceeee
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (373)
..+||+|+|++|||||||+++|++..++..+.+|++ ++....+.+++..+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~---------------------------- 79 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK---------------------------- 79 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE----------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE----------------------------
Confidence 368999999999999999999999999888888887 556677777776666
Q ss_pred eeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhhhc
Q psy16673 88 LYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATA 167 (373)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~~~ 167 (373)
+++||++|++++..+...++..+
T Consensus 80 ---------------------------------------------------------~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 80 ---------------------------------------------------------AQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp ---------------------------------------------------------EEEEEECSCCSSSCCCHHHHTTC
T ss_pred ---------------------------------------------------------EEEEECCCCcchhhhhHHHhhcC
Confidence 89999999999998888999999
Q ss_pred CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccccc
Q psy16673 168 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATA 247 (373)
Q Consensus 168 ~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a 247 (373)
+++++|||+++..+|+++..|+..+.... ....|+++++||.|+.+
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~-------------------------------- 148 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH-------------------------------- 148 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG--------------------------------
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc--------------------------------
Confidence 99999999999999999999988776542 24678888888888764
Q ss_pred cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEE
Q psy16673 248 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327 (373)
Q Consensus 248 ~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~ 327 (373)
.+.+..++++.++...++.|+
T Consensus 149 -----------------------------------------------------------~~~~~~~~a~~l~~~~~~~~l 169 (191)
T 1oix_A 149 -----------------------------------------------------------LRAVPTDEARAFAEKNGLSFI 169 (191)
T ss_dssp -----------------------------------------------------------GCCSCHHHHHHHHHHTTCEEE
T ss_pred -----------------------------------------------------------ccccCHHHHHHHHHHcCCEEE
Confidence 111223356667777889999
Q ss_pred EeccCCCcCHHHHHHHHHHH
Q psy16673 328 ECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 328 E~SAktg~nv~elf~~i~~~ 347 (373)
+|||+++.|++++|+.+.+.
T Consensus 170 d~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 170 ETSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999874
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=9.2e-24 Score=180.10 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred eeeeccccccchh------HhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|. .+...+++ +++++++|||+++.. ....|+.++.+ ..+|+++||||+|+..
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME-----MGANLLLALNKMDLAK 122 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH-----TTCCEEEEEECHHHHH
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh-----cCCCEEEEEEchHhcc
Confidence 8999999998874 45566665 799999999998753 44557777654 3688999999999864
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.91 E-value=2.1e-24 Score=202.26 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=86.7
Q ss_pred eeeeccccccchhH---hHHhhhhhcCeEEEEEeCCChhhHHHHHHH---HHHHHHHhccCCCccEEEecccccccccc-
Q psy16673 145 VDILDTCGDLQFPA---MRRLSIATAHAFLLVYSTTCLESFQSVKCY---FEEIREQRQDFQEIPIVVAGNKSDMTSHH- 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~~---~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~---~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~- 217 (373)
+++|||+||++|.. ++..||++++++++|||++++ .++.+..| +.++... .+++|++++|||+|+.++.
T Consensus 48 LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~---~~~ipillvgNK~DL~~~~~ 123 (331)
T 3r7w_B 48 LAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKV---NPSINIEVLIHKVDGLSEDF 123 (331)
T ss_dssp EEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHH---CTTCEEEEECCCCCSSCSHH
T ss_pred EEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhc---CCCCcEEEEEECcccCchhh
Confidence 99999999999964 578999999999999999998 44444444 4444433 2689999999999987520
Q ss_pred cccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
|.
T Consensus 124 R~------------------------------------------------------------------------------ 125 (331)
T 3r7w_B 124 KV------------------------------------------------------------------------------ 125 (331)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred eccccccccchhhhhhHHHHHhhh----cCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQR----QDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~----~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+..|.|..++++.+|+. .+++||||||++ .||.++|..+++.
T Consensus 126 -------~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~ 171 (331)
T 3r7w_B 126 -------DAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQK 171 (331)
T ss_dssp -------HHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTT
T ss_pred -------hHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHH
Confidence 01245666777888875 689999999998 5999999999974
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.90 E-value=2.3e-23 Score=195.89 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=61.6
Q ss_pred eeeeccccccch-----hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQF-----PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.| ..++..+++++|++++|||++++.+|+.+..|...+.......+.+|+++||||+|+..
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 54 LNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 999999999998 67888999999999999999999999999888776666543346799999999999874
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.90 E-value=8.9e-24 Score=181.47 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=86.9
Q ss_pred CCCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhcccccce
Q psy16673 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDV 84 (373)
Q Consensus 6 ~~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (373)
..++.+||+++|++|||||||+++|+++.|...+.+++. +.....+.+++. .
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------------------- 56 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--K------------------------- 56 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--E-------------------------
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--e-------------------------
Confidence 356788999999999999999999999888776666554 333333333321 1
Q ss_pred eeeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhh
Q psy16673 85 SEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSI 164 (373)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~ 164 (373)
+.+|||+|++.|..++..++
T Consensus 57 ------------------------------------------------------------~~l~Dt~G~~~~~~~~~~~~ 76 (178)
T 2lkc_A 57 ------------------------------------------------------------ITFLDTPGHEAFTTMRARGA 76 (178)
T ss_dssp ------------------------------------------------------------EEESCCCSSSSSSCSCCSSC
T ss_pred ------------------------------------------------------------EEEEECCCCHHHHHHHHHHH
Confidence 78999999999998888889
Q ss_pred hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 165 ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 165 ~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
..+|++++|||+++....+.+. .+.... ...+|+++|+||+|+..
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~----~l~~~~--~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVE----AINHAK--AANVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHH----HHHHHG--GGSCCEEEEEETTTSSC
T ss_pred hhCCEEEEEEECCCCCcHHHHH----HHHHHH--hCCCCEEEEEECccCCc
Confidence 9999999999998843222221 122221 14789999999999974
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=200.13 Aligned_cols=70 Identities=13% Similarity=0.260 Sum_probs=57.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|||++++.+|+.+..|+..+.... ....+|+++||||+|+.+
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTT
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCc
Confidence 9999999999999999999999999999999999999999998887765543 225799999999999975
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=7e-23 Score=205.03 Aligned_cols=70 Identities=14% Similarity=0.292 Sum_probs=62.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|||++++.+|+.+..|+..+.+.. ....+|+++||||+|+.+
T Consensus 368 ~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 368 FNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPD 437 (497)
T ss_dssp EEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECCSSSS
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhh-hcCCCcEEEEEECCCCCc
Confidence 9999999999999999999999999999999999999999999988876543 225799999999999864
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=2.5e-22 Score=180.42 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred eeeeccccc------cc----hhHhHHhhhhhcCeEEEEEeCCChhhHHH--HHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGD------LQ----FPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~------~~----~~~~~~~~~~~~~~~i~v~dv~~~~s~~~--l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+ +. +..+. .++..+|++++|||++++.+|+. ...|+..+... ...+|+++||||+|
T Consensus 78 ~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~---~~~~piilv~nK~D 153 (228)
T 2qu8_A 78 YQIIDTPGLLDRAFENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV---FSNKSIVIGFNKID 153 (228)
T ss_dssp EEEEECTTTTTSCGGGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC---C-CCCEEEEEECGG
T ss_pred EEEEECCCCcCcccchhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh---hcCCcEEEEEeCcc
Confidence 899999998 43 33333 34678899999999999988752 23455555432 24789999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+.+
T Consensus 154 l~~ 156 (228)
T 2qu8_A 154 KCN 156 (228)
T ss_dssp GCC
T ss_pred cCC
Confidence 875
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=4.2e-23 Score=177.43 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=52.3
Q ss_pred eeeeccccccchh----H--h--HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP----A--M--RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~--~--~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+. . + ...+++.+|++++|||++++.+++ ...|+..+.+... ..+|+++|+||+|+.+
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLP--AKLPITVVRNKADITG 129 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSC--TTCCEEEEEECHHHHC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcc--cCCCEEEEEECccCCc
Confidence 8899999986532 1 1 224688999999999999998876 4568777766532 4689999999999864
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.88 E-value=3.3e-22 Score=173.39 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred eeeeccccccchh------HhHHhhhhh--cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIAT--AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~~--~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+. .+...++.. ++++++|+|.++ ++.+..|+..+.. ..+|+++|+||+|+..
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-----MGANLLLALNKMDLAK 126 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence 8999999998874 456666654 899999999875 6667778877764 3688999999999864
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.88 E-value=1.9e-22 Score=174.95 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=53.7
Q ss_pred eeeecccc-----------ccchhHhHHhhhhh-cCeEEEEEeCCChhhHHHH-HHHHHH--------HHHHhccCCCcc
Q psy16673 145 VDILDTCG-----------DLQFPAMRRLSIAT-AHAFLLVYSTTCLESFQSV-KCYFEE--------IREQRQDFQEIP 203 (373)
Q Consensus 145 ~~i~D~~g-----------~~~~~~~~~~~~~~-~~~~i~v~dv~~~~s~~~l-~~~~~~--------i~~~~~~~~~~p 203 (373)
+.+|||+| ++.|..+...++.. ++++++||++.+..+|+.+ ..|... +.... ....+|
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p 124 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL-RELDIP 124 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH-HHTTCC
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH-HhcCCc
Confidence 88999999 77888888888888 9999999999999999887 567653 22211 114677
Q ss_pred EEEecccccccc
Q psy16673 204 IVVAGNKSDMTS 215 (373)
Q Consensus 204 i~ivgnK~Dl~~ 215 (373)
+++||||+|+..
T Consensus 125 iilv~nK~Dl~~ 136 (190)
T 2cxx_A 125 TIVAVNKLDKIK 136 (190)
T ss_dssp EEEEEECGGGCS
T ss_pred eEEEeehHhccC
Confidence 888888888764
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.87 E-value=6.9e-22 Score=166.62 Aligned_cols=65 Identities=14% Similarity=0.141 Sum_probs=47.7
Q ss_pred eeeeccccccc-------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ-------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~-------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++. +......++..+|++++|||+++..+... .|+...... ..+|+++||||+|+.+
T Consensus 51 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 51 FLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPK 122 (161)
T ss_dssp EEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGG
T ss_pred EEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECccccc
Confidence 88999999887 34566677899999999999998644432 222222222 3688999999999875
No 117
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=9.5e-22 Score=171.52 Aligned_cols=65 Identities=22% Similarity=0.295 Sum_probs=52.1
Q ss_pred eeeecccc----------ccchhHhHHhhhhhc---CeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~~---~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+| ++.|..+...++..+ |++++|+|+++..++.... ++..+.. ..+|+++|+||+
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~i~v~nK~ 144 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-----YGIPVIVIATKA 144 (195)
T ss_dssp EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-----TTCCEEEEEECG
T ss_pred EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-----cCCCEEEEEECc
Confidence 89999999 778888888888888 9999999999988877643 2222222 468999999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 145 Dl~~ 148 (195)
T 1svi_A 145 DKIP 148 (195)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9875
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.87 E-value=3.1e-22 Score=202.09 Aligned_cols=170 Identities=13% Similarity=0.162 Sum_probs=113.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee-cceeeeeeecceEEeeeeeEEeccCCccchhhhccccccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (373)
....+||+++|++|||||||+++|+++.|...+.+|++ ++.++....-+
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~------------------------------ 87 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIK------------------------------ 87 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSG------------------------------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccc------------------------------
Confidence 45679999999999999999999999999888888887 33322110000
Q ss_pred eeeeeccccchhhhhccccCCCcceEEEeccCcccccccccchhhhhhhhhhhcCCceeeeeeccccccchhHhHHhhhh
Q psy16673 86 EWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165 (373)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~nk~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~D~~g~~~~~~~~~~~~~ 165 (373)
.+........+.+.+||++|++.|..+...+++
T Consensus 88 -----------------------------------------------~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~ 120 (535)
T 3dpu_A 88 -----------------------------------------------GLENDDELKECLFHFWDFGGQEIMHASHQFFMT 120 (535)
T ss_dssp -----------------------------------------------GGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHH
T ss_pred -----------------------------------------------ceeecCCCceEEEEEEECCcHHHHHHHHHHHcc
Confidence 000000112234999999999999999999999
Q ss_pred hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccccccccccceeeeccCCCCCchhhhhccc
Q psy16673 166 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIA 245 (373)
Q Consensus 166 ~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~r~~~~~~~~~~dtag~~~~~~~~~~s~~ 245 (373)
+++++++|||+++. +.+..|+..+..+. ++.|+++||||+|+... +
T Consensus 121 ~~d~ii~V~D~s~~---~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~-~--------------------------- 166 (535)
T 3dpu_A 121 RSSVYMLLLDSRTD---SNKHYWLRHIEKYG---GKSPVIVVMNKIDENPS-Y--------------------------- 166 (535)
T ss_dssp SSEEEEEEECGGGG---GGHHHHHHHHHHHS---SSCCEEEEECCTTTCTT-C---------------------------
T ss_pred CCcEEEEEEeCCCc---hhHHHHHHHHHHhC---CCCCEEEEEECCCcccc-c---------------------------
Confidence 99999999998754 66778999998875 46889999999998641 1
Q ss_pred cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe
Q psy16673 246 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ 325 (373)
Q Consensus 246 ~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~ 325 (373)
.+..+..+.++...+++
T Consensus 167 ---------------------------------------------------------------~v~~~~~~~~~~~~~~~ 183 (535)
T 3dpu_A 167 ---------------------------------------------------------------NIEQKKINERFPAIENR 183 (535)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHCGGGTTC
T ss_pred ---------------------------------------------------------------ccCHHHHHHHHHhcCCc
Confidence 11222344455566789
Q ss_pred EEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 326 LLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 326 ~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|++|||++|.||+++|+.+++.+..
T Consensus 184 ~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 184 FHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp EEECCC-----CTTHHHHHHHHHTC
T ss_pred eEEEecCcccCHHHHHHHHHHHHhc
Confidence 9999999999999999999997644
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.85 E-value=1.9e-20 Score=162.84 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=48.0
Q ss_pred eeeecccc----------ccchhHhHHhhhhhc---CeEEEEEeCCChhhHH--HHHHHHHHHHHHhccCCCccEEEecc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQ--SVKCYFEEIREQRQDFQEIPIVVAGN 209 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~~---~~~i~v~dv~~~~s~~--~l~~~~~~i~~~~~~~~~~pi~ivgn 209 (373)
+.+|||+| ++.|..+...+++.+ +++++|+|.++..+.. .+..|+.. ..+|+++|+|
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~i~v~n 141 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--------LNIPFTIVLT 141 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--------TTCCEEEEEE
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--------cCCCEEEEEE
Confidence 88999999 777888888888877 8999999988764433 33334332 2689999999
Q ss_pred cccccc
Q psy16673 210 KSDMTS 215 (373)
Q Consensus 210 K~Dl~~ 215 (373)
|+|+.+
T Consensus 142 K~Dl~~ 147 (195)
T 3pqc_A 142 KMDKVK 147 (195)
T ss_dssp CGGGSC
T ss_pred ChhcCC
Confidence 999874
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.84 E-value=1.2e-20 Score=173.04 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=78.2
Q ss_pred eeeeccccccchhH------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|+..+.. +...++ ..+|++++|+|.++..+. ..|...+.+ ..+|+++|+||+|+...
T Consensus 54 ~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~-----~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 54 INLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE-----MEKKVILAMTAIDEAKK 125 (258)
T ss_dssp EEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT-----TTCCEEEEEECHHHHHH
T ss_pred EEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh-----cCCCEEEEEECcCCCCc
Confidence 99999999987753 445565 479999999999986543 346555554 36888899999988641
Q ss_pred ccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 217 ~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
T Consensus 126 -------------------------------------------------------------------------------- 125 (258)
T 3a1s_A 126 -------------------------------------------------------------------------------- 125 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.+. .+.+.+++.+|+|+++|||++|.||+++|+.+++.++
T Consensus 126 -----------~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 126 -----------TGMK-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp -----------TTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------cchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1111 1245566777899999999999999999999998654
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=8.8e-21 Score=175.01 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=48.6
Q ss_pred eeeeccccccchh------HhHHhhhh--hcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~------~~~~~~~~--~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+. .+...++. .+|++++|||+++..+ ...|...+.+ ..+|+++|+||+|+..
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 9999999998875 56677776 5999999999988644 3456666554 3688899999998863
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.83 E-value=1.5e-19 Score=169.92 Aligned_cols=65 Identities=23% Similarity=0.215 Sum_probs=55.3
Q ss_pred eeeeccccccchh----------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFP----------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~----------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|+..+. .....++..+|++++|+|+++..+++....|++.+.. ..+|+++|+||+|+.
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 8999999986543 5677888999999999999999899888888877765 368999999999986
No 123
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.82 E-value=3.7e-20 Score=169.48 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=47.3
Q ss_pred eeeeccccccchhH----------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA----------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~----------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|...+.. +...++ ..+|++++|+|+++...+..+..| +.+ ..+|+++|+||+|
T Consensus 50 ~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~-----~~~pvilv~NK~D 121 (256)
T 3iby_A 50 IEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE-----LGKPVVVALNMMD 121 (256)
T ss_dssp EEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT-----SCSCEEEEEECHH
T ss_pred EEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH-----cCCCEEEEEEChh
Confidence 89999999877653 566677 789999999999987655544333 322 3688999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 122 l~~ 124 (256)
T 3iby_A 122 IAE 124 (256)
T ss_dssp HHH
T ss_pred cCC
Confidence 864
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.5e-20 Score=167.15 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=61.9
Q ss_pred eeeeccccccchhHhHHhhhhh----cCeEEEEEeCC-ChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~----~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+......++.. ++++++|||++ ++.+|..+..|+..+..... ....+|+++|+||+|+..
T Consensus 57 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 57 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp CEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 9999999999999888888887 89999999999 88999999999888766532 125799999999999975
No 125
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.81 E-value=7.2e-20 Score=169.23 Aligned_cols=63 Identities=24% Similarity=0.255 Sum_probs=45.8
Q ss_pred eeeeccccccchh----------HhHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFP----------AMRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~----------~~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|+..+. .+...++ ..+|++++|+|.++..... .|...+.+. .+|+++|+||+|
T Consensus 52 ~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~-----~~p~ivv~NK~D 123 (274)
T 3i8s_A 52 VTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL-----GIPCIVALNMLD 123 (274)
T ss_dssp EEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH-----TCCEEEEEECHH
T ss_pred eEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc-----CCCEEEEEECcc
Confidence 8899999988765 2333343 6899999999999865443 344444443 589999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 124 l~~ 126 (274)
T 3i8s_A 124 IAE 126 (274)
T ss_dssp HHH
T ss_pred chh
Confidence 864
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=2.7e-19 Score=165.07 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=77.9
Q ss_pred eeeeccccccchhH------hHHhhh--hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccccc
Q psy16673 145 VDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSH 216 (373)
Q Consensus 145 ~~i~D~~g~~~~~~------~~~~~~--~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~ 216 (373)
+.+|||+|+..+.. +...++ .++|++++|+|.++.. ....|...+.+. ..+|+++|+||+|+...
T Consensus 52 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 124 (271)
T 3k53_A 52 FLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM----EVKNIILVLNKFDLLKK 124 (271)
T ss_dssp EEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT----TCCSEEEEEECHHHHHH
T ss_pred EEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc----CCCCEEEEEEChhcCcc
Confidence 88999999887765 566666 5799999999998853 333444444443 23889999999998641
Q ss_pred ccccccccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 217 HRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 217 ~r~~~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+
T Consensus 125 -~------------------------------------------------------------------------------ 125 (271)
T 3k53_A 125 -K------------------------------------------------------------------------------ 125 (271)
T ss_dssp -H------------------------------------------------------------------------------
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
.+.. ..+.+++.+|+++++|||++|.|++++|+.+.+.+.
T Consensus 126 ------------~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 126 ------------GAKI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ------------TCCC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------ccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0011 135566677899999999999999999999998764
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=2.7e-19 Score=159.51 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=47.7
Q ss_pred eeeecccc----------ccchhHhHHhhhhh---cCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~~~~~---~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+| ++.|..+...++.. +|++++|+|..+..+.. -..|+..+.. ..+|+++|+||+
T Consensus 81 ~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~-----~~~p~i~v~nK~ 154 (223)
T 4dhe_A 81 AHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP-----TGKPIHSLLTKC 154 (223)
T ss_dssp EEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG-----GCCCEEEEEECG
T ss_pred EEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh-----cCCCEEEEEecc
Confidence 99999999 45556777777777 67799999998754422 2334444443 368999999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 155 Dl~~ 158 (223)
T 4dhe_A 155 DKLT 158 (223)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9875
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.79 E-value=3.9e-19 Score=176.04 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=43.1
Q ss_pred eeeeccccccchhHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+..+.... ..++..+|++++|||++++.+++.+..+...+... ...|+++|+||+|+..
T Consensus 283 l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 283 FRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAA 357 (476)
T ss_dssp EEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCT
T ss_pred EEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCC
Confidence 8999999987765432 34678899999999999998887655544434333 3689999999999875
No 129
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=6e-19 Score=167.62 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=56.4
Q ss_pred eeeecccccc----chhHhHHhhhhh---cCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDL----QFPAMRRLSIAT---AHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~----~~~~~~~~~~~~---~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.. .+..+...++++ ++++++|+|+++ +.+++.+..|..++..+.......|+++|+||+|+.
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 8999999953 344565666555 999999999998 789999999999998875333568888888888876
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 288 ~ 288 (342)
T 1lnz_A 288 E 288 (342)
T ss_dssp T
T ss_pred C
Confidence 4
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.76 E-value=3.2e-17 Score=159.62 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=58.6
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|++.|......++..+|++++|+|+++..++.....|+..+.... ..|+++|+||+|+.+
T Consensus 76 ~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~----~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 76 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG----VKNLIIVQNKVDVVS 143 (403)
T ss_dssp EEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT----CCCEEEEEECGGGSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC----CCCEEEEEECccccc
Confidence 39999999999999999999999999999999999877777777777666552 358999999999975
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.75 E-value=5.4e-19 Score=172.28 Aligned_cols=63 Identities=27% Similarity=0.235 Sum_probs=49.1
Q ss_pred eeeeccccccchhHh-------HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAM-------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~-------~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|..+ ...++.++|++++|||+... +....|+..+.+. .+|+++|+||+|+..
T Consensus 85 l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 85 VTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM-----EIPFVVVVNKIDVLG 154 (423)
T ss_dssp EEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT-----TCCEEEECCCCTTTT
T ss_pred EEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc-----CCCEEEEEeCcCCCC
Confidence 899999999887644 45578899999999999333 3345677777654 689999999999875
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.75 E-value=1.6e-17 Score=159.30 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred eeeeccccccchh---------HhHHhhhhhcCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQFP---------AMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~---------~~~~~~~~~~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|...+. .........+|++++|+|+++.. +++....|+..+.... ...|+++|+||+|+
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~---~~~piilV~NK~Dl 292 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF---KDLPFLVVINKIDV 292 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT---TTSCEEEEECCTTT
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc---CCCCEEEEEECccc
Confidence 8999999975432 11223445689999999999887 7888888998888764 37899999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 293 ~~ 294 (357)
T 2e87_A 293 AD 294 (357)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.75 E-value=8.2e-18 Score=157.39 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred eeeeccccccc--------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHH-HHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~--------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~-~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|..+ +......+++.+|++++|||++++.+.. ..|+ +.+.... +..|+++|+||+|+.+
T Consensus 57 l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 57 IVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV---GKVPILLVGNKLDAAK 131 (301)
T ss_dssp EEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence 89999999876 4566777889999999999998875544 3444 4444332 4689999999999874
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.74 E-value=6.5e-18 Score=167.43 Aligned_cols=63 Identities=24% Similarity=0.213 Sum_probs=48.5
Q ss_pred eeeecccccc-chh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL-QFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~-~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. .+. .....++..+|++++|||++++.+++..+-| +.+ ...|+++|+||+|+..
T Consensus 293 ~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l-------~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI-------KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH-------TTSSEEEEEEECSSCC
T ss_pred EEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh-------cCCCEEEEEECccccc
Confidence 8899999987 553 2345678999999999999998888764332 222 3678999999999864
No 135
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=1.6e-18 Score=173.22 Aligned_cols=65 Identities=29% Similarity=0.361 Sum_probs=52.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++.........|. .+.. ..+|+++++||+|+.+
T Consensus 54 i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~~-----~~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 54 ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQ-HAKD-----AHVPIVLAINKCDKAE 118 (537)
T ss_dssp CBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHHT-----TTCCEEECCBSGGGTT
T ss_pred EEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHH-HHHH-----cCCcEEEEEecccccc
Confidence 899999999999999999999999999999999866555444332 2222 4689999999999975
No 136
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.71 E-value=2.1e-17 Score=163.05 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=39.6
Q ss_pred eeeeccccccchhHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|...+.... ..++..+|++++|||.+++.++.. ..|+..+ ...|+++|+||+|+..
T Consensus 274 v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l-------~~~piivV~NK~Dl~~ 344 (462)
T 3geh_A 274 VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV-------KHRPLILVMNKIDLVE 344 (462)
T ss_dssp EEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH-------TTSCEEEEEECTTSSC
T ss_pred EEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc-------cCCcEEEEEECCCCCc
Confidence 8899999986654332 235778999999999998776655 3444443 2369999999999975
No 137
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.71 E-value=4e-17 Score=153.53 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.++.++..||++++++|+|||++ +..+++....|++.+.... ...++|++|+|||+|
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~-~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKD 245 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG-GGTTCEEEEEEECHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh-ccCCceEEEEEECch
Confidence 44999999999999999999999999999999665 5667777777777776543 235799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 246 L~~ 248 (327)
T 3ohm_A 246 LLE 248 (327)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
No 138
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=143.17 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred eeeeccccccchhHhHHhhhhh----cCeEEEEEeCC-ChhhHHHHHHHHHHHHHHhc--cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ--DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~----~~~~i~v~dv~-~~~s~~~l~~~~~~i~~~~~--~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.+...+..++.. +|++++|||++ +..++..+..|+..+..... ....+|+++|+||+|+.+
T Consensus 93 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 93 VTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp CSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred EEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 9999999999998777777776 89999999999 89999999998887765532 225799999999999986
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=2.9e-16 Score=153.11 Aligned_cols=64 Identities=16% Similarity=0.128 Sum_probs=49.8
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++ +.+++.+..| ... ...|+++++||+|+.+
T Consensus 82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l----~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL----GIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT----TCCCEEEEEECTTSSC
T ss_pred EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc----CCCeEEEEEEccCCCC
Confidence 39999999999998877777788899999999984 4566655433 222 2357999999999975
No 140
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.69 E-value=5.1e-16 Score=148.81 Aligned_cols=68 Identities=28% Similarity=0.352 Sum_probs=50.9
Q ss_pred eeeecccccc---------chhHhHHhhhhhcCeEEEEEeCCChh--hHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL---------QFPAMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~---------~~~~~~~~~~~~~~~~i~v~dv~~~~--s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .|.... ..+..+|.+++|+|++++. .++.+..|.+.+.... ..+.|+++|+||+|+
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~--~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG--VSGKPILVTLNKIDK 304 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT--CCSCCEEEEEECGGG
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC--cCCCCEEEEEECCCC
Confidence 8899999962 233332 2478899999999999887 6777777777666553 246889999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 305 ~~ 306 (364)
T 2qtf_A 305 IN 306 (364)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 141
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=159.29 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=17.9
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
....++...+++||+|||++|.| ++.|..+++..
T Consensus 198 ~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i 231 (361)
T 2qag_A 198 RILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLL 231 (361)
T ss_dssp HHHHHTTCC-CCSCCCC----------CHHHHHHH
T ss_pred HHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHH
Confidence 44555666789999999999999 88888877754
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.68 E-value=5e-16 Score=154.35 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=50.3
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++ +.+++.+. .+.. ..+|+++++||+|+.+
T Consensus 75 i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~-----~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 75 ITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH-----FNIPIIVVITKSDNAG 139 (482)
T ss_dssp EEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH-----TTCCBCEEEECTTSSC
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH-----cCCCEEEEEECCCccc
Confidence 9999999999999888889999999999999988 55555543 2222 3578899999999874
No 143
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.68 E-value=2.4e-17 Score=163.42 Aligned_cols=62 Identities=26% Similarity=0.435 Sum_probs=50.2
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|++.|..++..++..+|++++|+|+++ +.+++.+. .+.. ..+|+++++||+|+.+
T Consensus 53 i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~----~~~~-----~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 53 ITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQ----HAKA-----AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp CCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHH----HHHH-----TTCCEEEEEECSSSST
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHH----HHHh-----cCceEEEEEEeccccc
Confidence 8999999999999998888999999999999988 34444332 2221 4689999999999975
No 144
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=141.31 Aligned_cols=69 Identities=17% Similarity=0.081 Sum_probs=44.7
Q ss_pred eeeecccccc-----------chhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDL-----------QFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~-----------~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|.. .+......++.++|++++|+|+++.... ...|+..+.+..+.....|+++|+||+|+
T Consensus 80 i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 80 LVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp EEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 8999999943 3344444556678999999998764431 22344444433222134689999999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 158 ~~ 159 (239)
T 3lxx_A 158 LG 159 (239)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 145
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=7.3e-16 Score=155.98 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=58.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+.+
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~------~~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE------QDLVIIPVINKIDLPS 139 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH------TTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH------CCCCEEEEEeccCccc
Confidence 449999999999999999999999999999999999888888887766543 4789999999999975
No 146
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.67 E-value=1.9e-16 Score=149.43 Aligned_cols=72 Identities=13% Similarity=0.066 Sum_probs=63.4
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.|+.++..||++++++|+|||++ +..+++....|++.+.... ...++|++|+|||+|
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiLv~NK~D 239 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLIFLNKMD 239 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEEEEECHH
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEEEEECch
Confidence 44999999999999999999999999999999998 7788888888888877643 236799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 240 L~~ 242 (340)
T 4fid_A 240 LFE 242 (340)
T ss_dssp HHH
T ss_pred hhh
Confidence 985
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.67 E-value=4.5e-16 Score=157.79 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=58.5
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~------~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME------MDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH------TTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH------CCCCEEEeeeccCccc
Confidence 449999999999999999999999999999999999888888777766543 4689999999999975
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.66 E-value=2.2e-16 Score=157.22 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=48.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHH--HHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l--~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++..++..+ ..+..+...........|+++|+||+|+.+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 399999999999999999999999999999999987554332 111111111111113356999999999875
No 149
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.66 E-value=3.4e-16 Score=143.08 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc-cCCce
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT-YSDRY 39 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~-f~~~~ 39 (373)
....++|+|+|++|||||||+|++++.. |...+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~ 52 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL 52 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC
Confidence 3457899999999999999999999765 44333
No 150
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.66 E-value=2.2e-16 Score=158.21 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=55.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|......+++.+|++++|+|.++..+......|. .+.. ..+|+++++||+|+..
T Consensus 84 i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~-----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 84 INLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL-----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp EEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT-----TTCCEEEEEECTTSCC
T ss_pred EEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH-----cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999999999987777766663 2332 4689999999999964
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=3.4e-15 Score=145.67 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|.......+..+|++++|+|+++ +.+++.+..| ... ...|+++++||+|+.+
T Consensus 84 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~----~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 84 RVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII----GQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH----TCCCEEEEEECGGGSC
T ss_pred EEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc----CCCcEEEEEECccCCC
Confidence 39999999999998877777888999999999985 4566655433 222 2357899999999975
No 152
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1.3e-15 Score=149.66 Aligned_cols=69 Identities=23% Similarity=0.133 Sum_probs=49.4
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhh---HHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++... |+....+.+.+..... ..+| +++++||+|+..
T Consensus 97 ~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 97 FTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 9999999999999999999999999999999987532 2211122222221111 2456 899999999863
No 153
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.64 E-value=9.8e-16 Score=155.38 Aligned_cols=62 Identities=26% Similarity=0.305 Sum_probs=53.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCC---hhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~---~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|++.|..++..+++.+|++++|||+++ +.+++.+..+ .. ..+|+++++||+|+..
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~-----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM-----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH-----TTCCEEEEEECGGGST
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH-----cCCeEEEEeccccccc
Confidence 8999999999999998888999999999999999 7777765432 22 4789999999999974
No 154
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.64 E-value=4.1e-16 Score=153.23 Aligned_cols=70 Identities=24% Similarity=0.221 Sum_probs=54.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc---cCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~---~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++ .+|+.+..|..+.++... .....|+++++||+|+.+
T Consensus 86 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 86 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 9999999999999989999999999999999999 788876655443333221 112246888899999864
No 155
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.64 E-value=9.1e-16 Score=143.56 Aligned_cols=64 Identities=19% Similarity=0.133 Sum_probs=42.9
Q ss_pred eeeecccccc-chh--------HhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDL-QFP--------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~-~~~--------~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||+|.. ... .....++..+|++++|+|.++ +.....|+...... ...|+++++||.|+..
T Consensus 58 i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 58 AIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp EEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS----SSSCEEEEEESTTTCC
T ss_pred EEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh----cCCCEEEEEECcccCc
Confidence 8899999987 322 223455678899999999876 33333344322221 4688899999999864
No 156
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.64 E-value=8.3e-17 Score=150.64 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=57.9
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||+ +++|..+++.+++++|++++|||++++. +++.+..|+..+.. ..+|++|||||+|+.+
T Consensus 65 ~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-----~~~piilv~NK~DL~~ 129 (301)
T 1u0l_A 65 GVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-----NELETVMVINKMDLYD 129 (301)
T ss_dssp EEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred EEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEEeHHHcCC
Confidence 899999 8999999999999999999999999987 79999999987764 4689999999999874
No 157
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.64 E-value=5.8e-16 Score=142.94 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=13.7
Q ss_pred hhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 320 QRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
...+++++++||++|.|++++++.+.+.
T Consensus 174 ~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 174 QEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHTTCCCCCC-----------CHHHHHT
T ss_pred HHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 3467889999999999999999999874
No 158
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=3.8e-16 Score=145.49 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=47.9
Q ss_pred eeeecccccc-------------chhHhHHhhhhhcCeEE-EEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDL-------------QFPAMRRLSIATAHAFL-LVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.+|||+|.. .+..+...++..+++++ +|+|.++..+......|...+.. ...|+++|+||
T Consensus 127 l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~i~V~NK 201 (299)
T 2aka_B 127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP-----QGQRTIGVITK 201 (299)
T ss_dssp EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT-----TCSSEEEEEEC
T ss_pred ceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC-----CCCeEEEEEEc
Confidence 9999999963 35567778888888777 68999875544443344444322 46899999999
Q ss_pred ccccc
Q psy16673 211 SDMTS 215 (373)
Q Consensus 211 ~Dl~~ 215 (373)
+|+.+
T Consensus 202 ~Dl~~ 206 (299)
T 2aka_B 202 LDLMD 206 (299)
T ss_dssp GGGSC
T ss_pred cccCC
Confidence 99975
No 159
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=149.73 Aligned_cols=67 Identities=21% Similarity=0.047 Sum_probs=50.8
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......++..+|++++|+|+++....+ ...|+..+... ...|+++|+||+|+.+
T Consensus 105 ~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~----~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 105 KFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL----GIKHIVVAINKMDLNG 171 (434)
T ss_dssp EEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT----TCCEEEEEEECTTTTT
T ss_pred eEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc----CCCeEEEEEEcCcCCc
Confidence 3899999999999988888999999999999998864322 33344433332 2236899999999874
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.63 E-value=5.2e-15 Score=134.47 Aligned_cols=69 Identities=20% Similarity=0.178 Sum_probs=43.9
Q ss_pred eeeeccccc--------cchhHhHHhhh----hhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhc-cCCCccEEEecccc
Q psy16673 145 VDILDTCGD--------LQFPAMRRLSI----ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~--------~~~~~~~~~~~----~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~-~~~~~pi~ivgnK~ 211 (373)
+.+|||+|. +.+......++ .++|++++|+|+++... ....+++.+.+..+ .....|+++++||.
T Consensus 72 i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 72 VEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp EEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred EEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH--HHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 899999996 33333222233 88999999999985322 11233444444322 11368899999999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+.+
T Consensus 150 Dl~~ 153 (247)
T 3lxw_A 150 DLAG 153 (247)
T ss_dssp GGTT
T ss_pred hcCC
Confidence 9864
No 161
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.62 E-value=2.4e-15 Score=146.52 Aligned_cols=65 Identities=23% Similarity=0.146 Sum_probs=52.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++.... ....|+..+.. ..+| +++++||+|+.+
T Consensus 77 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~-----~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 77 YSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ-----VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp EEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH-----TTCCCEEEEEECGGGCC
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCEEEEEEECccccC
Confidence 89999999999999888999999999999999886543 33455555543 3577 889999999973
No 162
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=5.7e-16 Score=144.88 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=33.3
Q ss_pred eeeeccccccccchh--hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLESFQS--VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~--v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++|+||+|+...+. +..++++.+++..+++||||||++| |++++|..+++..
T Consensus 158 iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 158 IVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 347777777755443 3456778888888999999999999 9999999999855
No 163
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=5.5e-15 Score=130.14 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=24.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcccCCceeccee
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~ 44 (373)
-.+..+|+++|++|||||||+|++++..|...+.++.+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G 60 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG 60 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence 34568999999999999999999997665444444444
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.61 E-value=2.6e-15 Score=145.85 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=50.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......+++.+|++++|+|+++....+....| ..+.. ..+| +++++||+|+.+
T Consensus 68 ~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp EEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-----TTCCCEEEEEECGGGCS
T ss_pred EEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-----cCCCeEEEEEECcccCC
Confidence 89999999999988888889999999999999985444433333 33332 3577 689999999874
No 165
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.58 E-value=1.4e-14 Score=139.17 Aligned_cols=62 Identities=5% Similarity=-0.093 Sum_probs=48.6
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccE-EEecc-cccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI-VVAGN-KSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi-~ivgn-K~Dl 213 (373)
+.+|||+|+++|......+++.+|++++|+| . ...+....+|+..+... .+|. +++.| |+|+
T Consensus 62 i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~-----~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 62 MVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL-----GFKHGIIALTRSDST 125 (370)
T ss_dssp EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT-----TCCEEEEEECCGGGS
T ss_pred EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc-----CCCeEEEEEEeccCC
Confidence 9999999999998888888999999999999 4 44455556666555443 4565 77777 9998
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.58 E-value=5.9e-16 Score=153.39 Aligned_cols=70 Identities=26% Similarity=0.140 Sum_probs=43.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh---hhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~---~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++. .+|+....|.+.+..... ..+| +++++||+|+.+
T Consensus 122 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPS 195 (467)
T ss_dssp EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTT
T ss_pred EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCC
Confidence 389999999999998888889999999999999986 345433344444433221 3566 899999999963
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4e-15 Score=151.71 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=49.2
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+.+|||+|+++|......+++.+|++++|+|+++.. +|.....+.+.+.... .....|+++|+||+|+.+
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTTCCEEEEEEECTTTTT
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcCCCeEEEEEecccccc
Confidence 3999999999999999999999999999999998742 1111112222222221 112345899999999874
No 168
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=9.8e-15 Score=143.51 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=54.1
Q ss_pred eeeeccccc----------cchhHhHH-hhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGD----------LQFPAMRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~----------~~~~~~~~-~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|+ +.|..++. .+++.+|++++|||+++..+++.+ .|...+.. ...|+++|+||+|+
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-----~~~~iiiv~NK~Dl 298 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-----AGKAVVIVVNKWDA 298 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGGG
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-----cCCcEEEEEECccC
Confidence 889999997 66776655 478899999999999999888876 47666654 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 299 ~~ 300 (436)
T 2hjg_A 299 VD 300 (436)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.56 E-value=1.8e-15 Score=149.51 Aligned_cols=66 Identities=18% Similarity=0.140 Sum_probs=49.0
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChh---hHH---HHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQ---SVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~---s~~---~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++++|+|+++.. +|+ ....++..+.. ..+| +++++||+|+.+
T Consensus 87 ~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 87 VTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-----TTCCEEEEEEECGGGGT
T ss_pred EEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-----cCCCeEEEEEEcccccc
Confidence 999999999999999999999999999999998752 332 12222222222 2455 889999999873
No 170
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=1.7e-14 Score=132.23 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=52.2
Q ss_pred eeeeccccccchhHhHHhhhh---------hcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIA---------TAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~---------~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|++++......+++ ++|++++|++++... +... ..|++.+.+..+.....|+++|+||+|+.
T Consensus 86 l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 86 INIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred EEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 899999999888655444443 789999999997755 4443 46888887765432335899999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.53 E-value=4.9e-15 Score=150.57 Aligned_cols=62 Identities=26% Similarity=0.223 Sum_probs=38.5
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHHHHhccCCCcc-EEEecccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl 213 (373)
+.+|||+|+++|......++..+|++|+|+|+++. .+.+.+. .+.. ..+| +++|+||+|+
T Consensus 257 i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~----~~~~-----lgip~iIvviNKiDl 327 (592)
T 3mca_A 257 YEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY----LLRA-----LGISEIVVSVNKLDL 327 (592)
T ss_dssp --CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH----HHHH-----SSCCCEEEEEECGGG
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH----HHHH-----cCCCeEEEEEecccc
Confidence 89999999999988888888999999999999853 2333221 1221 2454 8899999998
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 328 ~~ 329 (592)
T 3mca_A 328 MS 329 (592)
T ss_dssp GT
T ss_pred cc
Confidence 74
No 172
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.52 E-value=1.4e-14 Score=138.03 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=96.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+.+|||+|++.|+.++..++++++++|+|||+++ ..++++...|.+.+.......++|++
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii------- 264 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII------- 264 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE-------
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE-------
Confidence 4457899999999999999999999999999999999 56788888888888775544456655
Q ss_pred cceeeeeccccccccch---------------hhhhhHHHHHhh-----------hcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ---------------SVKCYFEEIREQ-----------RQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r---------------~v~~~~~~~~a~-----------~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
|+|||+|+...+ .++.+++..++. ..++.|+||||++|.||+++|+.++
T Consensus 265 -----Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~ 339 (353)
T 1cip_A 265 -----LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVT 339 (353)
T ss_dssp -----EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred -----EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHH
Confidence 999999996544 356677777775 4678999999999999999999999
Q ss_pred HHh
Q psy16673 346 TLS 348 (373)
Q Consensus 346 ~~~ 348 (373)
+.+
T Consensus 340 ~~i 342 (353)
T 1cip_A 340 DVI 342 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.52 E-value=1.5e-13 Score=141.64 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=52.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+++|||+|+++|......+++.+|++++|+|.++.-..... .|+..+.. ..+|+++++||+|+.
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-----TTCCEEEEEECGGGC
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-----ccCCEEEEecCCchh
Confidence 3499999999999999999999999999999998776544433 34444443 368999999999985
No 174
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.52 E-value=1.9e-14 Score=137.13 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=92.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.+++.++++++++++|||++ +..+|++...|.+.+.+.....++|++
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii------- 254 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM------- 254 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE-------
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE-------
Confidence 345789999999999999999999999999999999 888999999999888776544456655
Q ss_pred cceeeeeccccccccchh--h-------------------hhhHHHHHhhh----------------cCCeEEEeccCCC
Q psy16673 292 AHAFLLVYSTTCLESFQS--V-------------------KCYFEEIREQR----------------QDFQLLECSAKDN 334 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~--v-------------------~~~~~~~~a~~----------------~~~~~~E~SAktg 334 (373)
|||||+|+...+. + +.+++..++.. ..+.++||||++|
T Consensus 255 -----LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 255 -----LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp -----EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred -----EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 9999999865443 1 23566666332 2356799999999
Q ss_pred cCHHHHHHHHHHHh
Q psy16673 335 YNIKEVFRTFLTLS 348 (373)
Q Consensus 335 ~nv~elf~~i~~~~ 348 (373)
.||+++|+.+++.+
T Consensus 330 ~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 330 KLVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999854
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.52 E-value=4.2e-14 Score=150.12 Aligned_cols=65 Identities=23% Similarity=0.143 Sum_probs=51.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCcc-EEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIP-IVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~p-i~ivgnK~Dl~~ 215 (373)
+.+|||+|+++|......++..+|++|+|+|+++....+ ...|+..+... .+| +++++||+|+.+
T Consensus 361 I~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l-----gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 361 YAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV-----GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp EEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH-----TCSCEEEEEECCTTCC
T ss_pred EEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc-----CCCeEEEEEeeccccc
Confidence 999999999999988888999999999999998864333 33344444432 567 789999999874
No 176
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.51 E-value=4e-14 Score=126.20 Aligned_cols=55 Identities=18% Similarity=0.056 Sum_probs=43.0
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhh--cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQR--QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~--~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.++|+||+|+...+.+..+....++.. .++++++|||++|.|++++|+.+.+.+
T Consensus 166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3459999999977655555555555543 368999999999999999999998854
No 177
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.50 E-value=2.9e-13 Score=140.04 Aligned_cols=65 Identities=22% Similarity=0.308 Sum_probs=56.8
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|...+..+++.+|++++|+|.++..++.....|.. +.. ..+|+++++||+|+..
T Consensus 79 i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~-----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 79 INIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK-----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp EEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH-----cCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999888887776654 332 4789999999999975
No 178
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.49 E-value=1.9e-13 Score=135.04 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=51.2
Q ss_pred eeeecccc----------ccchhHhHHh-hhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCG----------DLQFPAMRRL-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g----------~~~~~~~~~~-~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+| ++.|..++.. ++..+|++++|+|+++..+. ....|...+.+ ...|+++|+||+|+
T Consensus 245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~-----~~~~~ilv~NK~Dl 318 (456)
T 4dcu_A 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE-----AGKAVVIVVNKWDA 318 (456)
T ss_dssp EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH-----TTCEEEEEEECGGG
T ss_pred EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH-----cCCCEEEEEEChhc
Confidence 89999999 7888877664 78899999999999885442 23345555554 46899999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
.+
T Consensus 319 ~~ 320 (456)
T 4dcu_A 319 VD 320 (456)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.48 E-value=9.4e-13 Score=136.39 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=55.2
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|.++.........|.. +.. ..+|+++++||+|+..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~-----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK-----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEeCCCccc
Confidence 349999999999999999999999999999999998766665555532 222 4689999999999975
No 180
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.48 E-value=6.5e-14 Score=135.07 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=93.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
..+++|||+|+++|+.+++.++++++++|+|||+++ ..+|++...|.+.+.......++|++
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pii-------- 288 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI-------- 288 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEE--------
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEE--------
Confidence 457899999999999999999999999999999999 99999999999998876544456655
Q ss_pred ceeeeeccccccccchh---hh---------------------------hhHHHHHh-----hh--------cCCeEEEe
Q psy16673 293 HAFLLVYSTTCLESFQS---VK---------------------------CYFEEIRE-----QR--------QDFQLLEC 329 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~---v~---------------------------~~~~~~~a-----~~--------~~~~~~E~ 329 (373)
|||||+|+...+. ++ .++++.++ .. .++.++||
T Consensus 289 ----LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T 364 (402)
T 1azs_C 289 ----LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT 364 (402)
T ss_dssp ----EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred ----EEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence 9999999966554 31 24455442 21 35778999
Q ss_pred ccCCCcCHHHHHHHHHHHh
Q psy16673 330 SAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 330 SAktg~nv~elf~~i~~~~ 348 (373)
||++|.||+++|..+.+.+
T Consensus 365 SA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 365 CAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp CTTCHHHHHHHHHHHHHHH
T ss_pred EeecCcCHHHHHHHHHHHH
Confidence 9999999999999988754
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=9e-13 Score=136.37 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=56.1
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++|||+|+.+|......+++.+|++++|+|.++..++.....|.. +.. ..+|+++++||+|+..
T Consensus 77 i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~-----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 77 VNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT-----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSTT
T ss_pred EEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH-----cCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999877777766653 333 3689999999999975
No 182
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.47 E-value=3.3e-13 Score=135.30 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=50.9
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.+++|||+|+++|......+++.+|++++|+|.++...... ..+.... ....+|+++++||+|+..
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~-~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVT-RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp EEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHH-TTTTCCEEEEEECTTSCC
T ss_pred EEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHH-HHcCCCEEEEEcCcCCcc
Confidence 39999999999999888889999999999999987543222 2222222 114789999999999975
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.47 E-value=3.6e-13 Score=139.34 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=52.9
Q ss_pred eeeeccccccc---hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ---FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+|||||... .......++..+|++++|+|.++..+...+..|.+.+.. ...|+++|+||+|+..
T Consensus 176 l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~-----~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG-----RGLTVFFLVNAWDQVR 244 (695)
T ss_dssp EEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT-----SCCCEEEEEECGGGGG
T ss_pred eEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh-----hCCCEEEEEECccccc
Confidence 89999999654 345666788999999999999998888877777654432 3568999999999975
No 184
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.46 E-value=1e-12 Score=129.14 Aligned_cols=65 Identities=23% Similarity=0.097 Sum_probs=44.5
Q ss_pred eeeeccccccchhH-----------hH-HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 145 VDILDTCGDLQFPA-----------MR-RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-----------~~-~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+|||+|...+.. .+ ..++..+|++++|+|+++..++... .+...+.. ...|+++|+||+|
T Consensus 230 ~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-----~~~~~ilv~NK~D 303 (439)
T 1mky_A 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-----RGRASVVVFNKWD 303 (439)
T ss_dssp EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-----TTCEEEEEEECGG
T ss_pred EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-----cCCCEEEEEECcc
Confidence 78999999743322 11 3467889999999999987666542 23333332 4689999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 304 l~~ 306 (439)
T 1mky_A 304 LVV 306 (439)
T ss_dssp GST
T ss_pred CCC
Confidence 975
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.46 E-value=1.5e-13 Score=126.37 Aligned_cols=70 Identities=16% Similarity=0.077 Sum_probs=49.0
Q ss_pred eeeeccccccchhHhHH-------hh--hhhcCeEEEEEeCCChhhHHHH-HHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRR-------LS--IATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~-------~~--~~~~~~~i~v~dv~~~~s~~~l-~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.+|||+|.+++..+.. .+ ...+|++++|||++.. ++... ..|+..+....+.....|+++|+||+|+.
T Consensus 89 l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 89 LNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp EEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred EEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 99999999877643211 11 2379999999998763 34433 36888777664322237999999999986
Q ss_pred c
Q psy16673 215 S 215 (373)
Q Consensus 215 ~ 215 (373)
.
T Consensus 168 ~ 168 (270)
T 1h65_A 168 P 168 (270)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=4.2e-14 Score=137.51 Aligned_cols=52 Identities=6% Similarity=0.004 Sum_probs=24.2
Q ss_pred eeeccccccccchhhhh--hHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 296 LLVYSTTCLESFQSVKC--YFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~--~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+|+||+|+...+.+.. ......+...++++|++||+++.|++++|..+...
T Consensus 171 IlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 171 IPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp EEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred EEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 36666666655555544 55566667779999999999999999999888763
No 187
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=3.5e-13 Score=130.95 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=49.1
Q ss_pred eeeeccccccc----hhHhHHhh---hhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 145 VDILDTCGDLQ----FPAMRRLS---IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 145 ~~i~D~~g~~~----~~~~~~~~---~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+||++|... +..+...+ ...++.++.++|++ ...++.+..|..++..+.......|.++++||.|+..
T Consensus 207 ~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 207 FTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp EEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred EEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 88999999743 22232233 34589999999998 6778888888888776542223567778888888764
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.44 E-value=1.4e-13 Score=131.87 Aligned_cols=67 Identities=16% Similarity=0.094 Sum_probs=48.2
Q ss_pred eeeeccccccch-------------hHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccc
Q psy16673 145 VDILDTCGDLQF-------------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKS 211 (373)
Q Consensus 145 ~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~ 211 (373)
+.+|||+|...+ ..+...|+.+++++++|++..+..... ..|+..+..... ...|+++|+||+
T Consensus 138 l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~--~~~~~i~V~nK~ 213 (360)
T 3t34_A 138 LTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP--SGDRTFGVLTKI 213 (360)
T ss_dssp EEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT--TCTTEEEEEECG
T ss_pred eEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc--cCCCEEEEEeCC
Confidence 999999998776 667888899999999998875543222 344444444321 456888889999
Q ss_pred cccc
Q psy16673 212 DMTS 215 (373)
Q Consensus 212 Dl~~ 215 (373)
|+..
T Consensus 214 Dl~~ 217 (360)
T 3t34_A 214 DLMD 217 (360)
T ss_dssp GGCC
T ss_pred ccCC
Confidence 9874
No 189
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.42 E-value=1.6e-13 Score=131.16 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=87.9
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCC----------ccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~----------~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+.+|||+|++.|+.++..++.+++++|+|||+++ ..+|++...|.+.+.......++|++
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI------- 272 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII------- 272 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE-------
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE-------
Confidence 3457899999999999999999999999999999999 78999999998888776544456655
Q ss_pred cceeeeeccccccccch----------------hhhhhHHHHHh--------h---hcCCeEEEeccCCCcCHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ----------------SVKCYFEEIRE--------Q---RQDFQLLECSAKDNYNIKEVFRTF 344 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r----------------~v~~~~~~~~a--------~---~~~~~~~E~SAktg~nv~elf~~i 344 (373)
|++||+|+...+ .++.+++..++ . ..++.|++|||++|.||+++|+.+
T Consensus 273 -----Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 273 -----LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp -----EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred -----EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 999999996544 25666776654 2 356889999999999999999999
Q ss_pred HHHh
Q psy16673 345 LTLS 348 (373)
Q Consensus 345 ~~~~ 348 (373)
.+.+
T Consensus 348 ~~~i 351 (362)
T 1zcb_A 348 KDTI 351 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.40 E-value=1.4e-12 Score=122.30 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=44.3
Q ss_pred eeeeccccccc-------------hhHhHHhhhhhcCeEEEEEeCCChhhH-HHHHHHHHHHHHHhccCCCccEEEeccc
Q psy16673 145 VDILDTCGDLQ-------------FPAMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEEIREQRQDFQEIPIVVAGNK 210 (373)
Q Consensus 145 ~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~dv~~~~s~-~~l~~~~~~i~~~~~~~~~~pi~ivgnK 210 (373)
+.+|||+|... +......++..+|++++|+|..+.... .....+...+. ....|+++|+||
T Consensus 133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~-----~~~~~~i~v~NK 207 (315)
T 1jwy_B 133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD-----PEGKRTIGVITK 207 (315)
T ss_dssp EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC-----SSCSSEEEEEEC
T ss_pred cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC-----CCCCcEEEEEcC
Confidence 99999999753 456677788999999999997443211 11112222222 146889999999
Q ss_pred ccccc
Q psy16673 211 SDMTS 215 (373)
Q Consensus 211 ~Dl~~ 215 (373)
+|+..
T Consensus 208 ~Dl~~ 212 (315)
T 1jwy_B 208 LDLMD 212 (315)
T ss_dssp TTSSC
T ss_pred cccCC
Confidence 99875
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.39 E-value=1.3e-13 Score=131.66 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhcccCC
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFNTYSD 37 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~~f~~ 37 (373)
...++|+|+|++|||||||+|+|++..|.+
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p 58 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLP 58 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 345799999999999999999999887753
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.37 E-value=2.2e-12 Score=114.35 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+++++++||++|.|++++|+.+.+.+
T Consensus 187 ~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 187 RAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp TSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999865
No 193
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.37 E-value=9.6e-12 Score=118.99 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=91.2
Q ss_pred eeeeccccccchh----Hh---HHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccccc
Q psy16673 145 VDILDTCGDLQFP----AM---RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHH 217 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~~---~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~~~ 217 (373)
+++.||+|...-. .+ .....+.+|++++|.|..++. ...+....++..........|..++.||.|...-
T Consensus 121 i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi- 197 (376)
T 4a9a_A 121 IQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGI- 197 (376)
T ss_dssp EEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCE-
T ss_pred EEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhh-
Confidence 8899999953211 11 223467899999999999863 3334444555554433345677888999997541
Q ss_pred cccccccceeeeccCCCCCc-----hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 218 RAVHLEDVDILDTCGDLQFP-----AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 218 r~~~~~~~~~~dtag~~~~~-----~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.+..+....... .+...+.-...-++++.+++. +++ .+.+ .... ...
T Consensus 198 --------~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~e----ddl---~d~~-~~~~------------~~~ 249 (376)
T 4a9a_A 198 --------SITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATV----DDL---IDVL-EASS------------RRY 249 (376)
T ss_dssp --------EEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCH----HHH---HHHH-TTTT------------CEE
T ss_pred --------hhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCH----HHH---HHHH-HHHH------------hhc
Confidence 111111111111 112222222222333333332 111 1111 1111 123
Q ss_pred ceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 293 HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
.+++++.||.|.... ++.+.+.+. -.++++|+..+.|++++.+.+.++..+.
T Consensus 250 ~p~i~v~nKid~~~~-----eele~l~~~--~~~~~is~~~e~gLd~Li~~~y~~L~Li 301 (376)
T 4a9a_A 250 MPAIYVLNKIDSLSI-----EELELLYRI--PNAVPISSGQDWNLDELLQVMWDRLNLV 301 (376)
T ss_dssp ECEEEEEECGGGSCH-----HHHHHHTTS--TTEEECCTTTCTTHHHHHHHHHHHHCCE
T ss_pred cceEEEEecccccCH-----HHHHHHhcc--cchhhhhhhhcccchhHHHHHHHHcCCc
Confidence 345699999997432 222222222 2479999999999999999988876443
No 194
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=1.9e-12 Score=125.29 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=33.3
Q ss_pred eeeeeccccccc----hhHhHH---hhhhhcCeEEEEEeCCCh-----------hhHHHHHHHHHHHHHH
Q psy16673 144 YVDILDTCGDLQ----FPAMRR---LSIATAHAFLLVYSTTCL-----------ESFQSVKCYFEEIREQ 195 (373)
Q Consensus 144 ~~~i~D~~g~~~----~~~~~~---~~~~~~~~~i~v~dv~~~-----------~s~~~l~~~~~~i~~~ 195 (373)
.+.+|||+|... +..+.. .+++.+|++++|+|+++. +.++.+..|..++...
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~ 141 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYW 141 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 399999999854 233333 346889999999999886 6777777777666543
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.30 E-value=3.7e-11 Score=114.34 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=35.7
Q ss_pred eeeeccccccchh----HhH---HhhhhhcCeEEEEEeCCCh----------hhHHHHHHHHHHHH
Q psy16673 145 VDILDTCGDLQFP----AMR---RLSIATAHAFLLVYSTTCL----------ESFQSVKCYFEEIR 193 (373)
Q Consensus 145 ~~i~D~~g~~~~~----~~~---~~~~~~~~~~i~v~dv~~~----------~s~~~l~~~~~~i~ 193 (373)
+++|||+|..++. .+. ..+++.+|++++|+|+++. +.++.+..|..++.
T Consensus 68 i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~ 133 (363)
T 1jal_A 68 MEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELA 133 (363)
T ss_dssp EEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHH
T ss_pred EEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHH
Confidence 8999999998763 232 2357899999999999862 45666666665553
No 196
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.29 E-value=6e-12 Score=119.83 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=62.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++||++|++.|+.++..++.+++++|+|||+++ ..+++....|++.+.... ...++|++|+|||+|
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~-~~~~~piiLv~NK~D 271 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIILFLNKKD 271 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc-cccCCcEEEEEECcC
Confidence 449999999999999999999999999999999999 567888888888887643 225799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 272 L~~ 274 (353)
T 1cip_A 272 LFE 274 (353)
T ss_dssp HHH
T ss_pred chh
Confidence 964
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.28 E-value=7.8e-12 Score=131.93 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++|||+|+.+|......+++.+|++++|+|+++..+++....|..... ..+|+++++||+|+..
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~------~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG------ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH------TTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCeEEEEECCCcch
Confidence 449999999999999999999999999999999999988888776754332 4689999999999974
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.23 E-value=1e-10 Score=111.74 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=66.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|... ........+|.+++|+|.+....++.+.. . -. ..+.++|.||+|+
T Consensus 174 ~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---~------~~------------~~p~ivVlNK~Dl 229 (355)
T 3p32_A 174 VILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---G------VL------------ELADIVVVNKADG 229 (355)
T ss_dssp EEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---T------SG------------GGCSEEEEECCCG
T ss_pred EEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---h------Hh------------hcCCEEEEECCCC
Confidence 44778888433 12233578999999999887665543321 0 01 1235599999999
Q ss_pred ccchhhhhh---HHHHHhh------hcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 305 ESFQSVKCY---FEEIREQ------RQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 305 ~~~r~v~~~---~~~~~a~------~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
......... ..+.+.. .+++|+++|||++|.||+++++.+.+....
T Consensus 230 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 230 EHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 765443221 1122211 236899999999999999999999986543
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.22 E-value=1.7e-11 Score=123.41 Aligned_cols=66 Identities=30% Similarity=0.380 Sum_probs=53.5
Q ss_pred eeeeccccccc-----------hhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccc
Q psy16673 145 VDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213 (373)
Q Consensus 145 ~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl 213 (373)
+.+|||+|... |......++..+|++++|+|+++....+....|++.+.. ...|+++|+||+|+
T Consensus 156 l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-----~~~pvilVlNK~Dl 230 (550)
T 2qpt_A 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-----HEDKIRVVLNKADM 230 (550)
T ss_dssp CEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT-----CGGGEEEEEECGGG
T ss_pred EEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh-----cCCCEEEEEECCCc
Confidence 89999999865 667777889999999999999886555666667666543 35789999999999
Q ss_pred cc
Q psy16673 214 TS 215 (373)
Q Consensus 214 ~~ 215 (373)
..
T Consensus 231 ~~ 232 (550)
T 2qpt_A 231 VE 232 (550)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.21 E-value=5.7e-11 Score=113.57 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.3
Q ss_pred cceeeeeccccccc--cc-hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLE--SF-QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~--~~-r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~ 343 (373)
.+++++++||.|.. +. +.+..+..+.+++..|++++++||+++.++.++++.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 34566999999853 21 134455667777778899999999996666665544
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.18 E-value=1.7e-10 Score=104.99 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=22.9
Q ss_pred CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 324 FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 324 ~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++++++||++|.|++++|+.+.+..
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHh
Confidence 5899999999999999999998864
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=110.88 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+.+++.|||++|.|++++++.|.+...
T Consensus 252 ~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 252 KPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988653
No 203
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.12 E-value=1.2e-10 Score=108.81 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=80.2
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS 309 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~ 309 (373)
..++++..+.+.+++++|++++|||++++. +++.+..|...+.. .++|+ ++|+||+|+.+.+.
T Consensus 64 ~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~------------ilV~NK~DL~~~~~ 127 (302)
T 2yv5_A 64 EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEP------------VIVFNKIDLLNEEE 127 (302)
T ss_dssp EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEE------------EEEECCGGGCCHHH
T ss_pred eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCE------------EEEEEcccCCCccc
Confidence 347888888888999999999999999986 89988998876654 23454 49999999977665
Q ss_pred hh-hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 310 VK-CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 310 v~-~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+. .+....+.+..|++++++||++|.|++++|+.+.
T Consensus 128 v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 128 KKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 44 4455566667789999999999999999997754
No 204
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.10 E-value=3.1e-11 Score=114.88 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=63.6
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCC----------ChhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~----------~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.|+.++..++++++++|+|||++ +..+|+.+..|++.+.+.. ...++|++|+|||+|
T Consensus 183 v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~-~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 183 EVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP-CFEKTSFMLFLNKFD 261 (354)
T ss_dssp -EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHH
T ss_pred eeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc-ccCCCeEEEEEECcc
Confidence 44999999999999999999999999999999998 7889999999998887643 226799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 262 L~~ 264 (354)
T 2xtz_A 262 IFE 264 (354)
T ss_dssp HHH
T ss_pred hhh
Confidence 975
No 205
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.06 E-value=1.5e-10 Score=111.59 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=64.7
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.|+.++..++++++++|+|||+++ ..+|+.+..|++.+.... ...++|++|+|||+|
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~-~~~~~piiLvgNK~D 295 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVILFLNKQD 295 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT-TCSSCCEEEEEECHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc-cCCCCeEEEEEEChh
Confidence 349999999999999999999999999999999999 899999999999887643 236799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 296 L~~ 298 (402)
T 1azs_C 296 LLA 298 (402)
T ss_dssp HHH
T ss_pred hhh
Confidence 975
No 206
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.02 E-value=4.9e-10 Score=106.37 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.9
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
..+++++||++|.|++++++.+.+.+.
T Consensus 234 ~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 234 QPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998654
No 207
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.00 E-value=3e-10 Score=100.79 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=60.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+++|||+|+++|..+++.++++++++++|||++++.||+++..|+..+....+. ++|++ |||||+|
T Consensus 63 ~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~-~~pii------------lVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS-DVIIM------------LVGNKTD 129 (216)
T ss_dssp EEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SSEEE------------EEEECTT
T ss_pred EEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCC-CCeEE------------EEeeccc
Confidence 4679999999999999999999999999999999999999999999999877653 45554 9999998
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.94 E-value=9.4e-09 Score=103.39 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=54.5
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+++++||||+.+|..-....++-+|++++|+|....-.-....-|.. +.+ ..+|++++-||.|...
T Consensus 101 ~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~-----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 101 VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM-----RATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH-----TTCCEEEEEECTTSCC
T ss_pred EEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH-----hCCceEEEEecccchh
Confidence 49999999999999999999999999999999987655555555533 333 4799999999999875
No 209
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.89 E-value=6.2e-09 Score=107.53 Aligned_cols=108 Identities=13% Similarity=0.006 Sum_probs=68.1
Q ss_pred cceeeeccCCCCC-------------chhhhhcc-ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccc
Q psy16673 224 DVDILDTCGDLQF-------------PAMRRLSI-ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSI 289 (373)
Q Consensus 224 ~~~~~dtag~~~~-------------~~~~~~s~-~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~ 289 (373)
++.++||+|...- ..+...+. ..++.+++|.|++....-++...+.+.+.. .+.|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~p------- 219 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQR------- 219 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSS-------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCC-------
Confidence 4678899996551 12233333 567889999999987665554344444432 2345
Q ss_pred cccceeeeeccccccccchhhhhhHHH--HHhhhcC-CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 290 ATAHAFLLVYSTTCLESFQSVKCYFEE--IREQRQD-FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 290 ~~~~~~ilvgnK~Dl~~~r~v~~~~~~--~~a~~~~-~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+++|.||+|+...........+ .+....+ .+++.+||++|.|++++++.+.+.
T Consensus 220 -----vIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 220 -----TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -----EEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -----EEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 4599999998654332211111 1111123 467889999999999999999874
No 210
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.85 E-value=8.7e-09 Score=105.63 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=52.1
Q ss_pred eeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 144 YVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 144 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
++++.||||+.+|.......++-+|++++|+|....-.-+...-|.. +.+ ..+|.+++-||.|...
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~-----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRK-----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHH-----HTCSCEECCEECCSSS
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHH-----cCCCeEEEEecccccc
Confidence 39999999999999999999999999999999977543333333433 333 3688999999999875
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.84 E-value=1.7e-09 Score=103.20 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=56.8
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCC----------hhhHHHHHHHHHHHHHHhccCCCccEEEeccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTC----------LESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSD 212 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~----------~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~D 212 (373)
+.+++|||+|++.++..+..++.+++++|+|||+++ ..+++....|++.+.+.. ...++|++|+|||+|
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piILv~NK~D 279 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKTD 279 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEEEEEChh
Confidence 349999999999999999999999999999999999 789999999998887643 225799999999999
Q ss_pred ccc
Q psy16673 213 MTS 215 (373)
Q Consensus 213 l~~ 215 (373)
+..
T Consensus 280 L~~ 282 (362)
T 1zcb_A 280 LLE 282 (362)
T ss_dssp HHH
T ss_pred hhh
Confidence 974
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.80 E-value=4.8e-09 Score=100.71 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=23.0
Q ss_pred eeeeccccccchhH-------hHHhhhhhcCeEEEEEeCCChhhHH
Q psy16673 145 VDILDTCGDLQFPA-------MRRLSIATAHAFLLVYSTTCLESFQ 183 (373)
Q Consensus 145 ~~i~D~~g~~~~~~-------~~~~~~~~~~~~i~v~dv~~~~s~~ 183 (373)
+++||++|...+.. ....+++.+|++++|+|..+..++.
T Consensus 88 i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~ 133 (396)
T 2ohf_A 88 LNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDIT 133 (396)
T ss_dssp EEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-------
T ss_pred cEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchh
Confidence 89999999876543 3456788999999999998765543
No 213
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.75 E-value=6.9e-09 Score=97.81 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=80.9
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.++..++++++++|+|||++ +..++++...|.+.+.......++|++
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pii------- 232 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKL------- 232 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEE-------
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEE-------
Confidence 456889999999999999999999999999999999 788899888888888776554556655
Q ss_pred cceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+|||+|+...+........-+..- .-+.+++++++.+.+..
T Consensus 233 -----Lv~NK~DL~~eki~~~~l~~~fp~y----------~g~~~~e~a~~~i~~~f 274 (340)
T 4fid_A 233 -----IFLNKMDLFEEKLTKVPLNTIFPEY----------TGGDNAVMGAQYIQQLF 274 (340)
T ss_dssp -----EEEECHHHHHHHHHHSCGGGTCTTC----------CCTTCHHHHHHHHHHHH
T ss_pred -----EEEECchhhhhhcCcchHHHhhhhh----------cCCCCHHHHHHHHHHhc
Confidence 9999999987665433322222111 12347999999998865
No 214
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.74 E-value=1.7e-08 Score=95.53 Aligned_cols=27 Identities=4% Similarity=0.038 Sum_probs=23.5
Q ss_pred CCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 323 DFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 323 ~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
..+++.+||++|.|++++++.|.+...
T Consensus 234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 234 TPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998654
No 215
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.69 E-value=2.8e-07 Score=95.57 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=54.0
Q ss_pred eeeeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 143 RYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 143 i~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
+.+++.||||+-+|..-....++-+|++++|.|+...-.-+...-|..... ..+|++++-||.|...
T Consensus 85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~------~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK------YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH------HTCCEEEEEECSSSTT
T ss_pred EEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH------cCCCeEEEEccccccC
Confidence 459999999999999999999999999999999987544444444544333 3699999999999864
No 216
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.65 E-value=3.1e-08 Score=84.70 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=89.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||+|+
T Consensus 62 l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~Dl 129 (181)
T 1fzq_A 62 LNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL------------IFANKQDL 129 (181)
T ss_dssp EEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE------------EEEECTTS
T ss_pred EEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE------------EEEECcCc
Confidence 568999999999999999999999999999999999999999988877654433455655 99999999
Q ss_pred ccchhhh---hhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQSVK---CYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r~v~---~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...+.+. ...+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 7654331 1111112234567899999999999999999999854
No 217
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.65 E-value=3.1e-08 Score=82.63 Aligned_cols=112 Identities=7% Similarity=0.047 Sum_probs=92.2
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 46 ~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 113 (164)
T 1r8s_A 46 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL------------VFANKQDL 113 (164)
T ss_dssp EEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE------------EEEECcCC
Confidence 569999999999999999999999999999999999999999988887765443445544 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 114 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp TTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 664 34444444444555678999999999999999999999854
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.61 E-value=4.8e-08 Score=84.88 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=88.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|..++.+.....++|++ +|+||+
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~ 136 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL------------ILGNKI 136 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE------------EEEECT
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE------------EEEECC
Confidence 46789999999999999999999999999999999999999999999888776544456655 999999
Q ss_pred ccccchhhhhhHHHHHhh-----------------hcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQ-----------------RQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~-----------------~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
|+.. .++.++.+.+.. ..+++|+||||++|.||+++|+.+++.
T Consensus 137 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 137 DRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred Cccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 9975 344444444433 245789999999999999999999863
No 219
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.60 E-value=4.7e-08 Score=84.35 Aligned_cols=118 Identities=10% Similarity=0.088 Sum_probs=94.3
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-------CCCCchhhccccccce
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-------FQFPAMRRLSIATAHA 294 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-------~~~p~v~~~~~~~~~~ 294 (373)
...+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+..+...... .++|+
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi----------- 130 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF----------- 130 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-----------
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-----------
Confidence 345789999999999999999999999999999999999999999988887765321 14554
Q ss_pred eeeeccccccccc---hhhhhhHHHHH-hhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESF---QSVKCYFEEIR-EQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~---r~v~~~~~~~~-a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
++|+||+|+... +.+....+... ++..+++|+||||++|.||+++|+.|++.+...
T Consensus 131 -ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 131 -LFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp -EEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred -EEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 499999999766 33333333222 256789999999999999999999999965433
No 220
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.59 E-value=4.6e-08 Score=85.13 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=65.7
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc-c---CCCCCchhhccccccceeeeecccc-ccc
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-Q---DFQFPAMRRLSIATAHAFLLVYSTT-CLE 305 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~-~---~~~~p~v~~~~~~~~~~~ilvgnK~-Dl~ 305 (373)
.||.+++.++..||.+++++|+|.|.+|+.-++ .+....++...- . ..++|++ +.+||. |+.
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLL------------VlANKqqDlp 176 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLL------------VLSCISQGDV 176 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEE------------EEEEESSTTS
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEE------------EEeCCCcCcc
Confidence 478899999999999999999999999987665 333222333221 1 1456766 999996 564
Q ss_pred cchhhhhhHHHHHh--h-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 306 SFQSVKCYFEEIRE--Q-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 306 ~~r~v~~~~~~~~a--~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
..-. ..+..+.+. . ...+.+..|||+||+|+.|-++++++.+
T Consensus 177 ~Ams-~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 177 KRMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp CBCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCCC-HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 3321 122222222 1 2456789999999999999999999743
No 221
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.58 E-value=9.7e-08 Score=80.05 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=92.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 53 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 120 (171)
T 1upt_A 53 FQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV------------VFANKQDM 120 (171)
T ss_dssp EEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE------------EEEECCCC
Confidence 468999999999999999999999999999999999999999988877765443445544 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|++|||++|.||+++|+.+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 121 EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 665 34444444455566788999999999999999999999854
No 222
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=6.1e-08 Score=83.04 Aligned_cols=115 Identities=6% Similarity=0.064 Sum_probs=88.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|+++|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 126 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL------------IFANK 126 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE------------EEEEC
Confidence 356789999999999999999999999999999999999999999999888876443445554 99999
Q ss_pred cccccchh---hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQS---VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~---v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+..... +....+.......+++|++|||++|.||+++|+.+++.+
T Consensus 127 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 127 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 99965322 211111111234578999999999999999999999865
No 223
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.56 E-value=5.9e-08 Score=82.92 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=91.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK 128 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL------------IFANK 128 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE------------EEEeC
Confidence 355789999999999999999999999999999999999999999998888775443445554 99999
Q ss_pred cccccchhhhhhHHHHH----hhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESFQSVKCYFEEIR----EQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~r~v~~~~~~~~----a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+...+.+. +..+.+ +...+++|++|||++|.||+++|+.+++.+
T Consensus 129 ~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 129 QDLPGALSCN-AIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TTSTTCCCHH-HHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccCCCCCCHH-HHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9997654322 112222 234578999999999999999999999864
No 224
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.55 E-value=6.5e-08 Score=83.57 Aligned_cols=115 Identities=6% Similarity=0.012 Sum_probs=89.7
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii------------lv~NK 139 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL------------VFANK 139 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE------------EEEEC
Confidence 345789999999999999999999999999999999999999999988888765444445554 99999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+... +.+....+...+...+++|+||||++|.||+++|+.+++.+
T Consensus 140 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 140 QDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 999664 34444444444555678999999999999999999999854
No 225
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.55 E-value=6.8e-08 Score=83.78 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCch-hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.+.. +++.+++.++++++|||++++.+|+++..|+.++.......++|++ +||||+
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 140 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI------------LVGNKS 140 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE------------EEEECT
T ss_pred EEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEeech
Confidence 356899999998875 7888899999999999999999999999999998877654456655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 141 D 141 (195)
T 3cbq_A 141 D 141 (195)
T ss_dssp T
T ss_pred h
Confidence 9
No 226
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.55 E-value=8.5e-08 Score=81.78 Aligned_cols=113 Identities=7% Similarity=0.080 Sum_probs=90.8
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..+...++++++++++|||++++.+|+++..|+..+.......++|+ ++|+||
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi------------ilv~NK 131 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL------------LIFANK 131 (181)
T ss_dssp TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEE------------EEEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeE------------EEEEEC
Confidence 35678999999999999999999999999999999999999999998888876543344554 499999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+|+... +.+....+.......+++|++|||++|.||+++|+.|++
T Consensus 132 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 132 QDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred CCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 999653 223322222333456789999999999999999999986
No 227
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.54 E-value=4.2e-07 Score=87.33 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
+..+|.|+|++|||||||+|++++..+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 357999999999999999999997544
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.54 E-value=9.7e-08 Score=82.31 Aligned_cols=110 Identities=10% Similarity=0.101 Sum_probs=91.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..++..+++.++++++|||++++.+|+++..|..++.+.....++|++ +|+||+
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK~ 134 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV------------ILGNKI 134 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE------------EEEECT
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEE------------EEEECC
Confidence 55789999999999999999999999999999999999999999999888776544456655 999999
Q ss_pred ccccchhhhhhHHHHHhh------------hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQ------------RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~------------~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.. .++.++.+.... ..+++|+||||++|.||+++|+.+++
T Consensus 135 Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 135 DAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp TSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred CCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 9975 334444444332 35689999999999999999999986
No 229
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.53 E-value=8.7e-08 Score=89.88 Aligned_cols=115 Identities=11% Similarity=0.004 Sum_probs=95.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecC----------CccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT----------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt----------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
...+++|||+|+++|+.++..++++++++++|||++ +..++++...|.+.+.......++|++
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii------- 238 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI------- 238 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE-------
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE-------
Confidence 345789999999999999999999999999999766 667777777777777665544456655
Q ss_pred cceeeeeccccccccch----------------hhhhhHHHHH----------hhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 292 AHAFLLVYSTTCLESFQ----------------SVKCYFEEIR----------EQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r----------------~v~~~~~~~~----------a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
|+|||+|+...+ .++.+++..+ +...++.++||||+++.||+++|..+.
T Consensus 239 -----L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~ 313 (327)
T 3ohm_A 239 -----LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 313 (327)
T ss_dssp -----EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred -----EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHH
Confidence 999999997766 4677778777 556778899999999999999999999
Q ss_pred HHh
Q psy16673 346 TLS 348 (373)
Q Consensus 346 ~~~ 348 (373)
+.+
T Consensus 314 ~~I 316 (327)
T 3ohm_A 314 DTI 316 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 230
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.53 E-value=6.6e-08 Score=80.76 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=45.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 117 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII------------LVGNKSD 117 (166)
T ss_dssp EEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE------------EEEECTT
T ss_pred EEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEeccc
Confidence 4679999999999999999999999999999999999999999999999887655566765 9999999
No 231
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.52 E-value=8.9e-08 Score=81.33 Aligned_cols=68 Identities=24% Similarity=0.424 Sum_probs=58.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++.+.....++|++ +|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 122 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM------------LVGNKKD 122 (181)
T ss_dssp EEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE------------EEEECTT
T ss_pred EEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887665566765 9999999
No 232
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.51 E-value=1.6e-07 Score=80.69 Aligned_cols=113 Identities=9% Similarity=0.071 Sum_probs=90.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeecc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgn 300 (373)
..+.+|||+|++.+..++..++++++++++|||++++.+|+++..|+..+...... .++|++ +|+|
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii------------lv~n 134 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL------------FFAN 134 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE------------EEEE
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE------------EEEe
Confidence 56789999999999999999999999999999999999999999998888775433 345554 9999
Q ss_pred ccccccchhhhhhHHHHHh---h--hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIRE---Q--RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a---~--~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+..... .++.+... . ..+++|++|||++|.||+++|+.|.+.++
T Consensus 135 K~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 135 KMDLRDAVT--SVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp CTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CcCcccCCC--HHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999965432 22222222 1 34789999999999999999999998653
No 233
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.51 E-value=8.2e-08 Score=81.73 Aligned_cols=67 Identities=36% Similarity=0.546 Sum_probs=60.8
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.+.....++|++ +|+||+|
T Consensus 68 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~D 134 (183)
T 3kkq_A 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI------------LVANKVD 134 (183)
T ss_dssp EEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE------------EEEECTT
T ss_pred EEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECCC
Confidence 567999999999999999999999999999999999999999999999887665566765 9999999
No 234
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.51 E-value=1.2e-07 Score=81.30 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=92.4
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.+..++..+++.++++++|||++++.+|+++..|...+.......++|++ +|+||+|+
T Consensus 68 ~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~Dl 135 (189)
T 2x77_A 68 FEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL------------IFANKQDL 135 (189)
T ss_dssp EEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE------------EEEECTTS
T ss_pred EEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE------------EEEECCCC
Confidence 468999999999999999999999999999999999999999888877765443445554 99999999
Q ss_pred ccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
... +.+....+...+...+++|++|||++|.||+++|+.+++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 665 34444444444556678999999999999999999999865
No 235
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.50 E-value=8.6e-08 Score=82.32 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=92.1
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+.......++|++ +|+||
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~NK 133 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL------------VLGNK 133 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE------------EEEEC
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE------------EEEEC
Confidence 345789999999999999999999999999999999999999999988888765443456655 99999
Q ss_pred cccccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 302 TCLESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 302 ~Dl~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+... +.+........+...+++|++|||++|.||+++|+.|++.+
T Consensus 134 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 134 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999654 22222233333345678999999999999999999999854
No 236
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.50 E-value=1.2e-07 Score=79.06 Aligned_cols=113 Identities=30% Similarity=0.386 Sum_probs=102.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 119 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI------------LVGNKCD 119 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE------------EEEECTT
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE------------EEEECcc
Confidence 4779999999999999999999999999999999999999999999988887655566655 9999999
Q ss_pred cccchhhhhhHHHHHhhhc-CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQ-DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~-~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+.+.+.+..++.+.+++.+ +++|++|||++|.|++++|+.+++.+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 9988888888899999887 89999999999999999999999854
No 237
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.48 E-value=1.1e-07 Score=83.75 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=62.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhh-HHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~-v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.+|++ +..|+..+....+ ++|++ +||||+
T Consensus 76 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pii------------lv~nK~ 141 (214)
T 3q3j_B 76 ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP--STRVL------------LIGCKT 141 (214)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT--TSEEE------------EEEECG
T ss_pred EEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 47799999999999999999999999999999999999999 6889999988753 45554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 142 Dl~~~~ 147 (214)
T 3q3j_B 142 DLRTDL 147 (214)
T ss_dssp GGGGCH
T ss_pred hhccch
Confidence 997653
No 238
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.48 E-value=1.5e-07 Score=78.54 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=62.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.++++++|||++++.+++++..|...+..... .++|+ ++|+||+|
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi------------ilv~nK~D 119 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIII------------ALVGNKID 119 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-TTCEE------------EEEEECGG
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECCC
Confidence 478999999999999999999999999999999999999999999988887653 24454 49999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+....
T Consensus 120 l~~~~ 124 (170)
T 1ek0_A 120 XLQEG 124 (170)
T ss_dssp GGGSS
T ss_pred ccccc
Confidence 87653
No 239
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.48 E-value=1.1e-07 Score=79.69 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=54.5
Q ss_pred cceeeeccCCCCCch-hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.+.. +++.+++.++++++|||++++.+|+.+..|+.++.......++|++ +|+||+
T Consensus 52 ~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~nK~ 119 (169)
T 3q85_A 52 TLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI------------LVGNKS 119 (169)
T ss_dssp EEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE------------EEEECT
T ss_pred EEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE------------EEeeCc
Confidence 466999999999876 7778899999999999999999999999999999887765567766 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 120 D 120 (169)
T 3q85_A 120 D 120 (169)
T ss_dssp T
T ss_pred c
Confidence 9
No 240
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=82.18 Aligned_cols=68 Identities=26% Similarity=0.491 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 140 (201)
T 3oes_A 73 HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV------------LVGNKAD 140 (201)
T ss_dssp EEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE------------EEEECTT
T ss_pred EEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887665566765 9999999
No 241
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.46 E-value=1.6e-07 Score=78.18 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 120 (168)
T 1u8z_A 53 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 120 (168)
T ss_dssp EEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE------------EEEECGG
T ss_pred EEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887765566765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T 1u8z_A 121 L 121 (168)
T ss_dssp G
T ss_pred c
Confidence 6
No 242
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=82.17 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++|+ ++|+||+|
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~NK~D 145 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG-SNIVQ------------LLIGNKSD 145 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCE------------EEEEECCc
Confidence 577999999999999999999999999999999999999999999999887653 23454 49999999
No 243
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.46 E-value=1e-07 Score=82.76 Aligned_cols=69 Identities=28% Similarity=0.388 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc--CCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ--DFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~--~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+.+..|+..+..... ..++|++ +|+||
T Consensus 74 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~nK 141 (208)
T 2yc2_C 74 ELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV------------LVANK 141 (208)
T ss_dssp EEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE------------EEEEC
T ss_pred EEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE------------EEEEC
Confidence 467999999999999999999999999999999999999999999999988765 2345554 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 142 ~Dl 144 (208)
T 2yc2_C 142 TDL 144 (208)
T ss_dssp C--
T ss_pred ccc
Confidence 994
No 244
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.46 E-value=1.6e-07 Score=89.93 Aligned_cols=96 Identities=10% Similarity=0.003 Sum_probs=70.8
Q ss_pred CCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh---
Q psy16673 233 DLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS--- 309 (373)
Q Consensus 233 ~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~--- 309 (373)
.+.|..+.+.+++.++.+++|+|+++.. ..|..++.+..+ +.| +++|+||+|+.....
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~~p------------~ilV~NK~DL~~~~~~~~ 116 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--NNK------------VLLVGNKADLIPKSVKHD 116 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--SSC------------EEEEEECGGGSCTTSCHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--CCc------------EEEEEEChhcCCcccCHH
Confidence 4677888888899999999999999853 345556655433 345 449999999965432
Q ss_pred hhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 310 VKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 310 v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~ 347 (373)
...++.+..++..|+ +++++||++|.|++++++.+.+.
T Consensus 117 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 117 KVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 122333444666777 89999999999999999999764
No 245
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.46 E-value=1.5e-07 Score=80.04 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=86.3
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..++..++++++++++|||++++.+|+++..|...+.......++|++ +|+||+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~ 129 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL------------VFANKQ 129 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE------------EEEECT
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEE------------EEEECC
Confidence 45789999999999999999999999999999999999999999988887765444455554 999999
Q ss_pred ccccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.... .+....+.......+++|++|||++|.||+++|+.+++.+
T Consensus 130 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 130 DQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp TSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 986542 2222221111233467899999999999999999999865
No 246
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.46 E-value=1.3e-07 Score=83.42 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=56.9
Q ss_pred ceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++. +..+++.+++.++++++|||++++.||+.+..|...+.+.....++|++ |||||+|
T Consensus 89 l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii------------lVgNK~D 156 (211)
T 2g3y_A 89 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII------------LVGNKSD 156 (211)
T ss_dssp EEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE------------EEEECTT
T ss_pred EEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE------------EEEEChH
Confidence 46899999887 5667888899999999999999999999999999888765444456655 9999999
No 247
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.45 E-value=1.6e-07 Score=80.63 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=53.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecC------CccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTT------CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt------~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
.+.+|||+|++.|..+++.++++++++++|||++ +..+|+.+..|+.++.. ...++|++ +
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~--~~~~~pii------------l 140 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL--TLDDVPIV------------I 140 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CTTSSCEE------------E
T ss_pred EEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc--ccCCCCEE------------E
Confidence 3569999999999999999999999999999999 55667777777666622 22345554 9
Q ss_pred ecccccc
Q psy16673 298 VYSTTCL 304 (373)
Q Consensus 298 vgnK~Dl 304 (373)
|+||+|+
T Consensus 141 v~NK~Dl 147 (198)
T 3t1o_A 141 QVNKRDL 147 (198)
T ss_dssp EEECTTS
T ss_pred EEEchhc
Confidence 9999995
No 248
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.45 E-value=2.2e-07 Score=77.23 Aligned_cols=68 Identities=35% Similarity=0.496 Sum_probs=61.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..++..+++.++++++|||++++.+++.+..|..++.+.....++|++ +|+||+|
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 119 (167)
T 1kao_A 52 VLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI------------LVGNKVD 119 (167)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE------------EEEECGG
T ss_pred EEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECCc
Confidence 3779999999999999999999999999999999999999999999988887665566655 9999999
No 249
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=2.3e-07 Score=80.86 Aligned_cols=67 Identities=27% Similarity=0.419 Sum_probs=59.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|+++|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+|
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~NK~D 142 (201)
T 2ew1_A 76 KLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS-NKVI------------TVLVGNKID 142 (201)
T ss_dssp EEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECGG
T ss_pred EEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECCC
Confidence 477999999999999999999999999999999999999999999998887653 2344 459999999
No 250
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.44 E-value=1.5e-07 Score=80.35 Aligned_cols=71 Identities=27% Similarity=0.331 Sum_probs=61.0
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..+++.++++++++++|||++++.+|+++ ..|...+....+ ++|+ ++||||+
T Consensus 56 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~pi------------ilv~nK~ 121 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKM------------LLVGCKS 121 (184)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEE------------EEEEECG
T ss_pred EEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCE------------EEEEEcc
Confidence 468999999999999999999999999999999999999999 679888877643 3554 4999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 122 Dl~~~~ 127 (184)
T 1m7b_A 122 DLRTDV 127 (184)
T ss_dssp GGGGCH
T ss_pred hhhcch
Confidence 997543
No 251
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.43 E-value=1.8e-07 Score=87.54 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=51.7
Q ss_pred cceeeeccCCCCCch---hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhc-cCCCCCchhhccccccceeeeec
Q psy16673 224 DVDILDTCGDLQFPA---MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 224 ~~~~~dtag~~~~~~---~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~-~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
.+++|||+||++|.. .++.++++++++++|||++++ .++....|.+.+.... ...++|++ ++|
T Consensus 47 ~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipil------------lvg 113 (331)
T 3r7w_B 47 DLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIE------------VLI 113 (331)
T ss_dssp CEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEE------------EEC
T ss_pred EEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEE------------EEE
Confidence 467999999999964 478999999999999999998 4444444543333221 11245655 999
Q ss_pred cccccccc
Q psy16673 300 STTCLESF 307 (373)
Q Consensus 300 nK~Dl~~~ 307 (373)
||+|+...
T Consensus 114 NK~DL~~~ 121 (331)
T 3r7w_B 114 HKVDGLSE 121 (331)
T ss_dssp CCCCSSCS
T ss_pred ECcccCch
Confidence 99999654
No 252
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=2.2e-07 Score=79.94 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=61.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|+++|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 67 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 132 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP--NVPFL------------LIGTQI 132 (194)
T ss_dssp EEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECT
T ss_pred EEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 4679999999999999999999999999999999999999998 69888887644 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 133 Dl~~~~ 138 (194)
T 2atx_A 133 DLRDDP 138 (194)
T ss_dssp TSTTCH
T ss_pred hhcccc
Confidence 997654
No 253
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.43 E-value=1.9e-07 Score=79.46 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=48.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++|+ ++|+||+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~D 124 (183)
T 2fu5_C 58 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEK------------MILGNKCD 124 (183)
T ss_dssp EEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEEC--
T ss_pred EEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876432 3454 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (183)
T 2fu5_C 125 V 125 (183)
T ss_dssp C
T ss_pred C
Confidence 6
No 254
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.43 E-value=2.2e-07 Score=80.55 Aligned_cols=71 Identities=24% Similarity=0.465 Sum_probs=60.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+++..|+..+...... ++|++ +|+||+|
T Consensus 78 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~pii------------lv~NK~D 144 (199)
T 2p5s_A 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE-TVPIM------------LVGNKAD 144 (199)
T ss_dssp EEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEE------------EEEECGG
T ss_pred EEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCC-CCCEE------------EEEECcc
Confidence 4779999999999999999999999999999999999999999999888775432 35544 9999999
Q ss_pred cccc
Q psy16673 304 LESF 307 (373)
Q Consensus 304 l~~~ 307 (373)
+...
T Consensus 145 l~~~ 148 (199)
T 2p5s_A 145 IRDT 148 (199)
T ss_dssp GHHH
T ss_pred cccc
Confidence 8644
No 255
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.42 E-value=2e-07 Score=78.97 Aligned_cols=73 Identities=23% Similarity=0.394 Sum_probs=61.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 122 (182)
T 3bwd_D 57 NLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP--GVPIV------------LVGTKL 122 (182)
T ss_dssp -CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEE------------EEEECH
T ss_pred EEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEech
Confidence 4669999999999999999999999999999999999999998 59888887643 45655 999999
Q ss_pred ccccchhh
Q psy16673 303 CLESFQSV 310 (373)
Q Consensus 303 Dl~~~r~v 310 (373)
|+...+.+
T Consensus 123 Dl~~~~~~ 130 (182)
T 3bwd_D 123 DLRDDKQF 130 (182)
T ss_dssp HHHTCHHH
T ss_pred hhhcCccc
Confidence 99776554
No 256
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.42 E-value=2.3e-07 Score=80.24 Aligned_cols=72 Identities=29% Similarity=0.417 Sum_probs=62.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++.+++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 69 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~ 134 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP--KAPII------------LVGTQS 134 (201)
T ss_dssp EEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SSCEE------------EEEECG
T ss_pred EEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECH
Confidence 4669999999999999999999999999999999999999997 69988887654 46655 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 135 Dl~~~~~ 141 (201)
T 2q3h_A 135 DLREDVK 141 (201)
T ss_dssp GGGGCHH
T ss_pred hhhhchh
Confidence 9976543
No 257
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.42 E-value=2.2e-07 Score=78.48 Aligned_cols=68 Identities=35% Similarity=0.535 Sum_probs=60.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++.+.....++|++ +|+||+|
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lv~nK~D 125 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV------------LVGNKAD 125 (181)
T ss_dssp EEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE------------EEEECGG
T ss_pred EEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4678999999999999999999999999999999999999999999988766555556655 9999999
No 258
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.42 E-value=1.6e-07 Score=80.55 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=60.6
Q ss_pred cceeeeccCCCCCc-hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFP-AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~-~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|. .+...+++.++++++|||++++.+|+.+..|..++.......++|++ +|+||+
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 137 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI------------LVGNKC 137 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE------------EEEECT
T ss_pred EEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECc
Confidence 47899999999998 88889999999999999999999999999999999887655556655 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 138 D 138 (189)
T 1z06_A 138 D 138 (189)
T ss_dssp T
T ss_pred c
Confidence 9
No 259
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.42 E-value=1.7e-07 Score=80.50 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=54.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++.|..+ ..+++.++++++|||++++.+|+++..|+.++...... .++|++ +||||
T Consensus 70 ~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii------------lv~nK 136 (187)
T 3c5c_A 70 HLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL------------LLGNK 136 (187)
T ss_dssp EEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE------------EEEEC
T ss_pred EEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE------------EEEEC
Confidence 4678999999999876 56899999999999999999999999999988876431 345555 99999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 137 ~D 138 (187)
T 3c5c_A 137 LD 138 (187)
T ss_dssp GG
T ss_pred cc
Confidence 99
No 260
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.42 E-value=2.6e-07 Score=78.45 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=62.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.++++++|||++++.+|+.+..|..++.......++|++ +|+||+|
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 134 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 134 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE------------EEEECGG
T ss_pred EEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 4679999999999999999999999999999999999999999999999887765566765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 135 l 135 (187)
T 2a9k_A 135 L 135 (187)
T ss_dssp G
T ss_pred c
Confidence 6
No 261
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.41 E-value=1.6e-07 Score=80.60 Aligned_cols=64 Identities=27% Similarity=0.274 Sum_probs=55.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|. ++++++++++|||++++.+|+++..|+..+.......++|++ +||||+|
T Consensus 68 ~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 130 (184)
T 3ihw_A 68 LLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV------------LVGTQDA 130 (184)
T ss_dssp EEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE------------EEEECTT
T ss_pred EEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECcc
Confidence 36789999999886 788899999999999999999999999999887654456655 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (184)
T 3ihw_A 131 I 131 (184)
T ss_dssp C
T ss_pred c
Confidence 6
No 262
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.41 E-value=2.5e-07 Score=78.89 Aligned_cols=68 Identities=32% Similarity=0.532 Sum_probs=59.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..++..++++++|||++++.+|+.+..|...+.......++|++ +|+||+|+
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------~v~nK~Dl 121 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV------------LVGNKCDL 121 (189)
T ss_dssp EEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE------------EEEECTTS
T ss_pred EEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEECccC
Confidence 668999999999999999999999999999999999999999999999887666667766 99999995
No 263
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.41 E-value=3e-07 Score=78.57 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=62.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+.......++|++ +|+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV------------LCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE------------EEEECT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEECc
Confidence 35789999999999999999999999999999999999999999999999887654556655 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 138 Dl 139 (195)
T 3bc1_A 138 DL 139 (195)
T ss_dssp TC
T ss_pred cc
Confidence 96
No 264
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.40 E-value=2.3e-07 Score=78.53 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=89.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+++..|..++...... .++|+ ++|+|
T Consensus 59 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~------------ilv~n 126 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF------------VILGN 126 (182)
T ss_dssp EEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE------------EEEEE
T ss_pred EEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE------------EEEEE
Confidence 4679999999999999999999999999999999999999999999988876532 34554 49999
Q ss_pred cccc-ccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCL-ESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl-~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+ ...+.+..++++.++. ..+++|++|||++|.||+++|+.+++.+.
T Consensus 127 K~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 127 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp CTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999 4556778888888887 66799999999999999999999998653
No 265
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.40 E-value=1.9e-07 Score=81.59 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=61.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 123 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP--NVPIV------------LVGTKL 123 (212)
T ss_dssp EEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCCEE------------EEEECH
T ss_pred EEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEeCH
Confidence 5779999999999999999999999999999999999999997 69988887654 45655 999999
Q ss_pred ccccchhh
Q psy16673 303 CLESFQSV 310 (373)
Q Consensus 303 Dl~~~r~v 310 (373)
|+...+.+
T Consensus 124 Dl~~~~~~ 131 (212)
T 2j0v_A 124 DLRDDKGY 131 (212)
T ss_dssp HHHTCHHH
T ss_pred HhhhCccc
Confidence 99776553
No 266
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=79.61 Aligned_cols=69 Identities=33% Similarity=0.502 Sum_probs=62.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+.......++|++ +|+||+|
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~nK~D 130 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL------------LVGNKSD 130 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE------------EEEECTT
T ss_pred EEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE------------EEEeccC
Confidence 4679999999999999999999999999999999999999999999999887765567765 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (206)
T 2bov_A 131 L 131 (206)
T ss_dssp C
T ss_pred c
Confidence 6
No 267
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.40 E-value=3.5e-07 Score=79.03 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=53.7
Q ss_pred cceeeeccCCCCCchhh---hhccccccEEEEEEecCCc--cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 224 DVDILDTCGDLQFPAMR---RLSIATAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~---~~s~~~a~~~i~v~dvt~~--~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
.+.+|||+|++.|..+. ..++++++++++|||++++ .++..+..|..++....+ ++|+ ++|
T Consensus 70 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~--~~pi------------ilv 135 (196)
T 3llu_A 70 NFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP--DMNF------------EVF 135 (196)
T ss_dssp CEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCT--TCEE------------EEE
T ss_pred EEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCC--CCcE------------EEE
Confidence 35699999999998887 8999999999999999998 455555555555433222 4554 499
Q ss_pred ccccccccch
Q psy16673 299 YSTTCLESFQ 308 (373)
Q Consensus 299 gnK~Dl~~~r 308 (373)
|||+|+....
T Consensus 136 ~nK~Dl~~~~ 145 (196)
T 3llu_A 136 IHKVDGLSDD 145 (196)
T ss_dssp EECGGGSCHH
T ss_pred EeccccCchh
Confidence 9999986543
No 268
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=2.8e-07 Score=77.95 Aligned_cols=68 Identities=26% Similarity=0.431 Sum_probs=52.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+++++..|...+..... .++|+ ++|+||+|
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~nK~D 127 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVAL------------MLLGNKVD 127 (180)
T ss_dssp EEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECCS
T ss_pred EEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcE------------EEEEECcc
Confidence 477999999999999999999999999999999999999999999998887654 34554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 128 l 128 (180)
T 2g6b_A 128 S 128 (180)
T ss_dssp T
T ss_pred c
Confidence 5
No 269
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.40 E-value=2.6e-07 Score=77.72 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=53.0
Q ss_pred cceeeeccCCCC--CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQ--FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~--~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|++. +..+...+++.++++++|||++++.+|+.+..|...+.+.....++|++ +|+||
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii------------lv~NK 120 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII------------LVGNK 120 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE------------EEEEC
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE------------EEEEC
Confidence 467999999988 6777888999999999999999999999999999988876544456655 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 121 ~Dl 123 (175)
T 2nzj_A 121 ADL 123 (175)
T ss_dssp TTC
T ss_pred hhh
Confidence 996
No 270
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.39 E-value=2.3e-07 Score=81.16 Aligned_cols=70 Identities=27% Similarity=0.343 Sum_probs=60.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++ ..|..++....+ ++|+ ++||||+
T Consensus 77 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~--~~pi------------ilv~nK~ 142 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP--NTKM------------LLVGCKS 142 (205)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TCEE------------EEEEECG
T ss_pred EEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC--CCCE------------EEEEech
Confidence 478999999999999999999999999999999999999999 679888877643 3554 4999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 143 Dl~~~ 147 (205)
T 1gwn_A 143 DLRTD 147 (205)
T ss_dssp GGGGC
T ss_pred hhccc
Confidence 99754
No 271
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.38 E-value=2e-07 Score=82.09 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=95.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+..+..... ++|++ +|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE--NIPIV------------LCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST--TCCEE------------EEEECT
T ss_pred EEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECC
Confidence 3477999999999999999999999999999999999999999999999988754 45655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+.+.+.. .+...++...+++|++|||++|.||+++|+.+++.+
T Consensus 130 Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 130 DIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred cccccccc--HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99765432 356677888899999999999999999999999864
No 272
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.38 E-value=2e-07 Score=79.96 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=61.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+++++..|+.++.......++|++ +|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i------------lv~nK~ 131 (195)
T 1x3s_A 64 AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM------------LVGNKI 131 (195)
T ss_dssp EEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE------------EEEECT
T ss_pred EEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE------------EEEECC
Confidence 34779999999999999999999999999999999999999999999998876554455654 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 132 Dl 133 (195)
T 1x3s_A 132 DK 133 (195)
T ss_dssp TS
T ss_pred cC
Confidence 97
No 273
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.37 E-value=3.4e-07 Score=77.32 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=58.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..++..++++++++++|||++++.+|+++..|+.++...... .+.| .+++|+||
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-----------~iilv~nK 124 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQP-----------LVALVGNK 124 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCC-----------EEEEEEEC
T ss_pred EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCC-----------eEEEEEEc
Confidence 35779999999999999999999999999999999999999999999888775431 1223 24599999
Q ss_pred cc
Q psy16673 302 TC 303 (373)
Q Consensus 302 ~D 303 (373)
+|
T Consensus 125 ~D 126 (178)
T 2hxs_A 125 ID 126 (178)
T ss_dssp GG
T ss_pred cc
Confidence 99
No 274
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.37 E-value=4.8e-07 Score=90.00 Aligned_cols=120 Identities=8% Similarity=0.085 Sum_probs=94.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.++++++|||++++.+|+++..|..++.+.....++|++ +|+||+|
T Consensus 367 ~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~i------------lv~NK~D 434 (497)
T 3lvq_E 367 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL------------IFANKQD 434 (497)
T ss_dssp EEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE------------EEEECCS
T ss_pred EEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEE------------EEEECCC
Confidence 3569999999999999999999999999999999999999999999888776554456655 9999999
Q ss_pred cccc---hhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhhccCC
Q psy16673 304 LESF---QSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355 (373)
Q Consensus 304 l~~~---r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~~~~~ 355 (373)
+... +.+....+...+...+++|++|||++|.||+++|+.|++.++......
T Consensus 435 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp SSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC------
T ss_pred CCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 9654 333333333444456778999999999999999999999765444443
No 275
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.37 E-value=5.3e-07 Score=82.21 Aligned_cols=105 Identities=6% Similarity=-0.005 Sum_probs=70.4
Q ss_pred cCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHH--HHHhhc-cCCCCCchhhccccccceeeeecccc-cccc
Q psy16673 231 CGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE--EIREQR-QDFQFPAMRRLSIATAHAFLLVYSTT-CLES 306 (373)
Q Consensus 231 ag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~--~i~~~~-~~~~~p~v~~~~~~~~~~~ilvgnK~-Dl~~ 306 (373)
.||...+.++..||.+++++|+|+|.+|++.++...++.+ .+.... ...++|++ +.+||. |+..
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLL------------VfANKkQDlp~ 262 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLL------------VLSCISQGDVK 262 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEE------------EEEEESSTTSC
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEE------------EEeCCcccccC
Confidence 5889999999999999999999999999987662222221 122111 12356666 999974 7743
Q ss_pred chhhhhhHHHHHh--h-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 307 FQSVKCYFEEIRE--Q-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 307 ~r~v~~~~~~~~a--~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.-. ..+..+.+. . ...+.+..|||+||+|+.|-++++++.+
T Consensus 263 Ams-~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 263 RMP-CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp BCC-HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCC-HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 322 122222222 1 2356789999999999999999999854
No 276
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.36 E-value=3.9e-07 Score=78.49 Aligned_cols=112 Identities=25% Similarity=0.346 Sum_probs=99.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|.+.+...... ++| +++|+||+|
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilV~NK~D 142 (192)
T 2il1_A 76 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASE-DAE------------LLLVGNKLD 142 (192)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECGG
T ss_pred EEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4779999999999999999999999999999999999999999998888776442 345 459999999
Q ss_pred cccchhhhhhHHHHHhhhc-CCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 304 LESFQSVKCYFEEIREQRQ-DFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~-~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+...+.+..++++.+++.. +++|++|||++|.||+++|+.|++.+
T Consensus 143 l~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 143 CETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9988888888888998874 89999999999999999999999854
No 277
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.36 E-value=4.1e-07 Score=75.90 Aligned_cols=69 Identities=25% Similarity=0.336 Sum_probs=59.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..++..+++.++++++|||++++.+++.+..|...+...... ++|+ ++|+||+
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~i------------ilv~nK~ 121 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP-NIVI------------ALSGNKA 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEECG
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCcE------------EEEEECc
Confidence 34779999999999999999999999999999999999999999999888876432 4554 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 122 Dl 123 (170)
T 1r2q_A 122 DL 123 (170)
T ss_dssp GG
T ss_pred cC
Confidence 96
No 278
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.36 E-value=5.1e-07 Score=76.11 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=98.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.+..++..+++.++++++|||++++.+++.+..|..++...... .++|+ ++|+|
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~------------i~v~n 124 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF------------VILGN 124 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE------------EEEEE
T ss_pred EEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE------------EEEEE
Confidence 4779999999999999999999999999999999999999999999988876542 34554 49999
Q ss_pred ccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 301 TTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+|+. .+.+..++++.++. ..+++|++|||++|.||+++|+.+++.+
T Consensus 125 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 125 KIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99997 66677788888887 6789999999999999999999999864
No 279
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.36 E-value=3.8e-07 Score=78.79 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=53.8
Q ss_pred ceeeeccCCCC-CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQ-FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~-~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++. +..+++.+++.++++++|||++++.||+.+..|...+.+.....++|++ +||||+|
T Consensus 58 l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii------------lV~NK~D 125 (192)
T 2cjw_A 58 IILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII------------LVGNKSD 125 (192)
T ss_dssp EEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE------------EEEECTT
T ss_pred EEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE------------EEEechh
Confidence 45789988876 5667888899999999999999999999999999888776444456655 9999999
No 280
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.36 E-value=4e-07 Score=77.52 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|...+..... .++|+ ++|+||+|
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi------------ilv~nK~D 126 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVI------------ILCGNKKD 126 (186)
T ss_dssp EEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEE------------EEEEECGG
T ss_pred EEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECcc
Confidence 577999999999999999999999999999999999999999999988877644 24554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 127 l 127 (186)
T 2bme_A 127 L 127 (186)
T ss_dssp G
T ss_pred c
Confidence 6
No 281
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.36 E-value=3.9e-07 Score=85.86 Aligned_cols=112 Identities=7% Similarity=0.045 Sum_probs=87.7
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCL 304 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl 304 (373)
+.++||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+.......++|++ +|+||+|+
T Consensus 211 l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii------------lV~NK~Dl 278 (329)
T 3o47_A 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL------------VFANKQDL 278 (329)
T ss_dssp EEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE------------EEEECTTS
T ss_pred EEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE------------EEEECccC
Confidence 468999999999999999999999999999999999999999988777665544456655 99999998
Q ss_pred ccch---hhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 305 ESFQ---SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 305 ~~~r---~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
.+.. .+....+...+...+++|++|||++|.||+++|+.|++.+
T Consensus 279 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 279 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 6543 3444444444455678999999999999999999999864
No 282
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.36 E-value=3.1e-07 Score=78.08 Aligned_cols=71 Identities=24% Similarity=0.420 Sum_probs=61.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 119 (186)
T 1mh1_A 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 119 (186)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TSCEE------------EEEECH
T ss_pred EEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC--CCCEE------------EEeEcc
Confidence 4669999999999999999999999999999999999999998 58888887654 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+....
T Consensus 120 Dl~~~~ 125 (186)
T 1mh1_A 120 DLRDDK 125 (186)
T ss_dssp HHHTCH
T ss_pred cccccc
Confidence 997654
No 283
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.35 E-value=4.6e-07 Score=77.78 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=60.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...+++.++++++|||++++.+|+.+..|+..+...... ++|+ ++|+||+|
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~------------ilv~nK~D 132 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-NVNK------------LLVGNKCD 132 (196)
T ss_dssp EEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECcc
Confidence 4779999999999999999999999999999999999999999999998876543 4454 59999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 133 l 133 (196)
T 3tkl_A 133 L 133 (196)
T ss_dssp C
T ss_pred c
Confidence 5
No 284
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3.6e-07 Score=80.71 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=57.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++|+ ++|+||+|
T Consensus 63 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~-~~~pi------------ilv~nK~D 129 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD-DNVAV------------GLIGNKSD 129 (223)
T ss_dssp EEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC---CEE------------EEEECCGG
T ss_pred EEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCeE------------EEEEECcc
Confidence 467999999999999999999999999999999999999999999998877643 23454 49999999
No 285
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.34 E-value=5.7e-07 Score=74.49 Aligned_cols=70 Identities=31% Similarity=0.499 Sum_probs=62.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..++..++..++++++|||++++.+++++..|...+.......++|++ +|+||+|
T Consensus 52 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i------------iv~nK~D 119 (166)
T 2ce2_X 52 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV------------LVGNKSD 119 (166)
T ss_dssp EEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE------------EEEECTT
T ss_pred EEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE------------EEEEchh
Confidence 3678999999999999999999999999999999999999999999998887665556655 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 120 l~ 121 (166)
T 2ce2_X 120 LA 121 (166)
T ss_dssp CS
T ss_pred hh
Confidence 64
No 286
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.34 E-value=5.6e-07 Score=77.08 Aligned_cols=68 Identities=25% Similarity=0.330 Sum_probs=59.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+|
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~nK~D 138 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW-DNAQ------------VILVGNKCD 138 (189)
T ss_dssp EEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECcc
Confidence 577999999999999999999999999999999999999999999998887642 2345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 139 l 139 (189)
T 2gf9_A 139 L 139 (189)
T ss_dssp C
T ss_pred c
Confidence 6
No 287
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.34 E-value=5.2e-07 Score=77.85 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=59.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++. ..++..+++.++++++|||++++.+|+++..|...+.......++|++ +|+||+
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii------------lv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI------------LVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE------------EEEECG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE------------EEEECc
Confidence 3477999999998 778888999999999999999999999999999998887655566765 999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 143 D 143 (196)
T 2atv_A 143 D 143 (196)
T ss_dssp G
T ss_pred c
Confidence 9
No 288
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.33 E-value=1.5e-07 Score=82.38 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=68.0
Q ss_pred ccceeeeccCCCCCch-hhhhccccccEEEEEEecCCcc-chhhHHH-HHHHHHhhc-cCCCCCchhhccccccceeeee
Q psy16673 223 EDVDILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLE-SFQSVKC-YFEEIREQR-QDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~-~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~-~~~~i~~~~-~~~~~p~v~~~~~~~~~~~ilv 298 (373)
..+.+|||+|++.|.. ++..++++++++++|||+++.. ++..+.. |.+.+.... ...++|+ ++|
T Consensus 54 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi------------ilv 121 (214)
T 2fh5_B 54 NSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL------------LIA 121 (214)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEE------------EEE
T ss_pred cEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCE------------EEE
Confidence 4578999999999987 8888999999999999999854 4666655 444443322 1224554 499
Q ss_pred ccccccccchh----------------------------------hhhhHHHHHhhhc---CCeEEEeccCCCcCH
Q psy16673 299 YSTTCLESFQS----------------------------------VKCYFEEIREQRQ---DFQLLECSAKDNYNI 337 (373)
Q Consensus 299 gnK~Dl~~~r~----------------------------------v~~~~~~~~a~~~---~~~~~E~SAktg~nv 337 (373)
+||+|+...+. +..++++.++... +++|+||||++|.+-
T Consensus 122 ~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~ 197 (214)
T 2fh5_B 122 CNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD 197 (214)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----
T ss_pred EECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc
Confidence 99999965532 2222233333322 789999999998654
No 289
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.33 E-value=4e-07 Score=78.38 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=58.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++ ..|...+....+ ++|+ ++|+||+
T Consensus 72 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~------------ilv~nK~ 137 (194)
T 3reg_A 72 ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID--TAKT------------VLVGLKV 137 (194)
T ss_dssp EEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TSEE------------EEEEECG
T ss_pred EEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCE------------EEEEECh
Confidence 357999999999999999999999999999999999999997 558888876543 3554 4999999
Q ss_pred ccc
Q psy16673 303 CLE 305 (373)
Q Consensus 303 Dl~ 305 (373)
|+.
T Consensus 138 Dl~ 140 (194)
T 3reg_A 138 DLR 140 (194)
T ss_dssp GGC
T ss_pred hhc
Confidence 975
No 290
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.33 E-value=5.2e-07 Score=75.42 Aligned_cols=67 Identities=27% Similarity=0.396 Sum_probs=51.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...+++.++++++|||++++.+++.+..|...+...... ++| +++|+||+|
T Consensus 56 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------iilv~nK~D 122 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN-EIC------------LCIVGNKID 122 (170)
T ss_dssp EEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG-GSE------------EEEEEECGG
T ss_pred EEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCe------------EEEEEECcc
Confidence 4678999999999999999999999999999999999999999999888775432 344 459999999
No 291
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.33 E-value=5.3e-07 Score=78.12 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=60.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iilv~nK~ 123 (203)
T 1zbd_A 57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW-DNAQ------------VLLVGNKC 123 (203)
T ss_dssp EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-SSCE------------EEEEEECT
T ss_pred EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECc
Confidence 3578999999999999999999999999999999999999999999998877652 2345 45999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 124 Dl 125 (203)
T 1zbd_A 124 DM 125 (203)
T ss_dssp TC
T ss_pred cc
Confidence 96
No 292
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.32 E-value=4.3e-07 Score=79.14 Aligned_cols=72 Identities=25% Similarity=0.429 Sum_probs=62.3
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.++||+|++.|..+...+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+|
T Consensus 80 l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~D 145 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKLD 145 (204)
T ss_dssp EEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SCCEE------------EEEECHH
T ss_pred EEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEechh
Confidence 559999999999999999999999999999999999999998 68888887652 45555 9999999
Q ss_pred cccchhh
Q psy16673 304 LESFQSV 310 (373)
Q Consensus 304 l~~~r~v 310 (373)
+...+..
T Consensus 146 l~~~~~~ 152 (204)
T 4gzl_A 146 LRDDKDT 152 (204)
T ss_dssp HHTCHHH
T ss_pred hccchhh
Confidence 9876553
No 293
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.32 E-value=5.8e-07 Score=77.35 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|...+..... .++| +++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~-~~~p------------iiiv~NK~ 138 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIV------------MAIAGNKC 138 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC-TTCE------------EEEEEECG
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCCc------------EEEEEECc
Confidence 3578999999999999999999999999999999999999999999998887653 2345 45999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 139 D 139 (192)
T 2fg5_A 139 D 139 (192)
T ss_dssp G
T ss_pred c
Confidence 9
No 294
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.32 E-value=5.2e-07 Score=78.43 Aligned_cols=68 Identities=29% Similarity=0.422 Sum_probs=59.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... .+|+ ++|+||+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~D 124 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLK------------LLVGNKCD 124 (206)
T ss_dssp EEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCEE------------EEEEECTT
T ss_pred EEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECCC
Confidence 4779999999999999999999999999999999999999999999988876532 4454 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (206)
T 2bcg_Y 125 L 125 (206)
T ss_dssp C
T ss_pred C
Confidence 6
No 295
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.32 E-value=4.4e-07 Score=77.93 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=58.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|...+..... .++| +++|+||+|
T Consensus 71 ~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~-~~~p------------iilv~nK~D 137 (191)
T 2a5j_A 71 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMV------------IMLIGNKSD 137 (191)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCC------------EEEEEECcc
Confidence 467999999999999999999999999999999999999999999998877643 2345 449999998
No 296
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.31 E-value=4.5e-07 Score=76.58 Aligned_cols=67 Identities=27% Similarity=0.391 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+++.+..|...+....+ ++|+ ++|+||+|
T Consensus 59 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~------------ilv~nK~D 124 (181)
T 3tw8_B 59 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD--DVCR------------ILVGNKND 124 (181)
T ss_dssp EEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT--TSEE------------EEEEECTT
T ss_pred EEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCE------------EEEEECCC
Confidence 467999999999999999999999999999999999999999999998887654 3554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 125 l 125 (181)
T 3tw8_B 125 D 125 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 297
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.31 E-value=5.8e-07 Score=76.93 Aligned_cols=70 Identities=31% Similarity=0.479 Sum_probs=51.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..++..++++++|||++++.+++++..|...+.......++|++ +|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i------------lv~nK~D 137 (190)
T 3con_A 70 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV------------LVGNKCD 137 (190)
T ss_dssp EEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE------------EEEECTT
T ss_pred EEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE------------EEEECCc
Confidence 3679999999999999999999999999999999999999999999998887665556655 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 138 l~ 139 (190)
T 3con_A 138 LP 139 (190)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 298
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.31 E-value=6.2e-07 Score=75.88 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=59.8
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------~i~v~nK~D 128 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP-NMV------------MALAGNKSD 128 (181)
T ss_dssp EEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECCc
Confidence 5789999999999999999999999999999999999999999999988876532 445 449999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 129 l 129 (181)
T 2efe_B 129 L 129 (181)
T ss_dssp C
T ss_pred c
Confidence 6
No 299
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.30 E-value=7.7e-07 Score=74.28 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=59.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.+..+...+++.++++++|||++++.+++++..|...+...... .+|+ ++|+||+
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~~~i------------ilv~nK~ 121 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPP-SIVV------------AIAGNKC 121 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT-TSEE------------EEEEECT
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC-CCcE------------EEEEECC
Confidence 34779999999999999999999999999999999999999999999988875432 3454 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 122 Dl 123 (170)
T 1z0j_A 122 DL 123 (170)
T ss_dssp TC
T ss_pred cc
Confidence 95
No 300
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.30 E-value=3.6e-07 Score=79.15 Aligned_cols=69 Identities=30% Similarity=0.419 Sum_probs=55.6
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 83 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------~ilv~nK~D 149 (199)
T 3l0i_B 83 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-NVN------------KLLVGNKCD 149 (199)
T ss_dssp EEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C-CSE------------EEEC-CCSS
T ss_pred EEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC-CCC------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988766542 345 459999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 150 l~ 151 (199)
T 3l0i_B 150 LT 151 (199)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 301
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.30 E-value=5.6e-07 Score=76.08 Aligned_cols=64 Identities=22% Similarity=0.164 Sum_probs=52.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC--CCCCchhhccccccceeeeeccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~--~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
.+.+|||+|+++ ..++++++++++|||++++.+|+++..|++.+...... .++|+ ++||||
T Consensus 55 ~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi------------ilv~nK 117 (178)
T 2iwr_A 55 LVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL------------ALVGTQ 117 (178)
T ss_dssp EEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE------------EEEEEC
T ss_pred EEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEEC
Confidence 467899999987 46788899999999999999999999988777765432 24554 499999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 118 ~Dl 120 (178)
T 2iwr_A 118 DRI 120 (178)
T ss_dssp TTC
T ss_pred ccc
Confidence 996
No 302
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.29 E-value=6.5e-07 Score=85.66 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=69.7
Q ss_pred CCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh--
Q psy16673 232 GDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS-- 309 (373)
Q Consensus 232 g~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~-- 309 (373)
.++.|.++.+.++..++.+++|+|+++..+ .|.+++.+..+ +.| .++|+||.|+.....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~~p------------iilV~NK~DLl~~~~~~ 117 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--DNP------------ILLVGNKADLLPRSVKY 117 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--TSC------------EEEEEECGGGSCTTCCH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--CCC------------EEEEEEChhcCCCccCH
Confidence 467888888888899999999999999764 23333443322 344 459999999865422
Q ss_pred -hhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 310 -VKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 310 -v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
...++.+...+..|+ +++++||++|.|++++++.+.+..
T Consensus 118 ~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 118 PKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 222333444566676 799999999999999999997743
No 303
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.29 E-value=8.6e-07 Score=76.10 Aligned_cols=68 Identities=22% Similarity=0.305 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+..... .++| +++|+||+|
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~-~~~p------------iilv~nK~D 141 (193)
T 2oil_A 75 KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE-ATIV------------VMLVGNKSD 141 (193)
T ss_dssp EEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC-TTCE------------EEEEEECGG
T ss_pred EEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCe------------EEEEEECCC
Confidence 467999999999999999999999999999999999999999999988877543 2345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 142 l 142 (193)
T 2oil_A 142 L 142 (193)
T ss_dssp G
T ss_pred c
Confidence 6
No 304
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.29 E-value=6.1e-07 Score=75.57 Aligned_cols=67 Identities=21% Similarity=0.337 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.+..+...+++.++++++|||++++.+++++..|...+...... ++| +++|+||+|
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p------------iilv~nK~D 131 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTV------------IILIGNKAD 131 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876542 345 459999999
No 305
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.29 E-value=3e-07 Score=78.98 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=59.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|++.+...... ++|+ ++|+||+
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~pi------------ilv~nK~ 138 (191)
T 3dz8_A 72 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWD-NAQV------------ILVGNKC 138 (191)
T ss_dssp EEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCEE------------EEEEECT
T ss_pred EEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECC
Confidence 34789999999999999999999999999999999999999999999998876532 4554 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 139 D 139 (191)
T 3dz8_A 139 D 139 (191)
T ss_dssp T
T ss_pred C
Confidence 9
No 306
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.28 E-value=5.7e-07 Score=75.10 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..++..+++.++++++|||++++.+++.+..|...+...... ++| +++|+||+|
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilv~nK~D 119 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAND-EAQ------------LLLVGNKSD 119 (170)
T ss_dssp EEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCT-TCE------------EEEEEECTT
T ss_pred EEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCc------------EEEEEECcc
Confidence 4679999999999999999999999999999999999999999999988876532 345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 120 l 120 (170)
T 1g16_A 120 M 120 (170)
T ss_dssp C
T ss_pred C
Confidence 7
No 307
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.27 E-value=5.6e-07 Score=74.98 Aligned_cols=67 Identities=30% Similarity=0.403 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+++.+..|...+.... .++|++ +|+||+|
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~pii------------lv~nK~D 120 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTA------------LVQNKID 120 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEE------------EEEECGG
T ss_pred EEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEE------------EEEECcc
Confidence 47799999999999999999999999999999999999999999999887765 245554 9999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 121 l 121 (168)
T 1z2a_A 121 L 121 (168)
T ss_dssp G
T ss_pred c
Confidence 6
No 308
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.27 E-value=1.7e-06 Score=80.83 Aligned_cols=70 Identities=26% Similarity=0.431 Sum_probs=60.6
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.|..++..+++.++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+|
T Consensus 205 ~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i------------lv~nK~D 270 (332)
T 2wkq_A 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP--NTPII------------LVGTKLD 270 (332)
T ss_dssp EEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT--TSCEE------------EEEECHH
T ss_pred EEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC--CCcEE------------EEEEchh
Confidence 459999999999999999999999999999999999999998 58888877654 46655 9999999
Q ss_pred cccch
Q psy16673 304 LESFQ 308 (373)
Q Consensus 304 l~~~r 308 (373)
+....
T Consensus 271 l~~~~ 275 (332)
T 2wkq_A 271 LRDDK 275 (332)
T ss_dssp HHTCH
T ss_pred ccccc
Confidence 86543
No 309
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=7.5e-07 Score=74.42 Aligned_cols=69 Identities=45% Similarity=0.630 Sum_probs=59.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+.+.... .++|++ +|+||+
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii------------~v~nK~ 119 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM------------LVGNKC 119 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE------------EEEECG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE------------EEEEcc
Confidence 4679999999999999999999999999999999999999999998888776432 245554 999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 120 Dl 121 (172)
T 2erx_A 120 DE 121 (172)
T ss_dssp GG
T ss_pred cc
Confidence 95
No 310
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.27 E-value=5.6e-07 Score=78.99 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=47.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 83 ~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 148 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK--KVPII------------VVGCKT 148 (214)
T ss_dssp EEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS--SCCEE------------EEEECG
T ss_pred EEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEECh
Confidence 4779999999999999999999999999999999999999997 58888877643 35555 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+...+.
T Consensus 149 Dl~~~~~ 155 (214)
T 2j1l_A 149 DLRKDKS 155 (214)
T ss_dssp GGGSCHH
T ss_pred hhhccch
Confidence 9976654
No 311
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.26 E-value=6.1e-07 Score=78.68 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=59.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.+..+...++.+++++++|||++++.+++++..|+..+...... ++|+ ++|+||+|
T Consensus 62 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~pi------------ilv~nK~D 128 (218)
T 4djt_A 62 KFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN-EAPI------------VVCANKID 128 (218)
T ss_dssp EEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS-SSCE------------EEEEECTT
T ss_pred EEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCE------------EEEEECCC
Confidence 4679999999999999999999999999999999999999999999988876543 3454 49999999
No 312
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.26 E-value=7.7e-07 Score=74.97 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=59.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..+...+++.++++++|||++++.+|+.+..|...+..... .++|+ ++|+||+|
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~pi------------ilv~nK~D 130 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVII------------MLVGNKTD 130 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSSEE------------EEEEECGG
T ss_pred EEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCcE------------EEEEECCc
Confidence 477999999999999999999999999999999999999999999988877654 23554 49999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 131 l 131 (179)
T 2y8e_A 131 L 131 (179)
T ss_dssp G
T ss_pred c
Confidence 5
No 313
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.25 E-value=8.5e-07 Score=76.90 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=61.1
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+++ ..|...+....+ ++|++ +|+||+
T Consensus 74 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 139 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP--NVPII------------LVGNKK 139 (201)
T ss_dssp EEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECG
T ss_pred EEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEecH
Confidence 467999999999999999999999999999999999999999 568888877543 45554 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 140 Dl~~~~~ 146 (201)
T 2gco_A 140 DLRQDEH 146 (201)
T ss_dssp GGTTCHH
T ss_pred HhhcCcc
Confidence 9976543
No 314
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.24 E-value=3.4e-07 Score=78.30 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=95.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCc-cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL-ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~-~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.+|||+|++.|..+++.++++++++++|||++++ .+|+.+..|+.++....+ ++|+ ++||||
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~--~~pi------------ilv~nK 121 (184)
T 2zej_A 56 LVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS--SSPV------------ILVGTH 121 (184)
T ss_dssp CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT--TCEE------------EEEEEC
T ss_pred eEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC--CCcE------------EEEEEC
Confidence 3577999999999999999999999999999999998 589999999988876542 3554 499999
Q ss_pred cccccchhhh---hhHHHHHhhhcCCe----EEEeccCCCc-CHHHHHHHHHHHhh
Q psy16673 302 TCLESFQSVK---CYFEEIREQRQDFQ----LLECSAKDNY-NIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r~v~---~~~~~~~a~~~~~~----~~E~SAktg~-nv~elf~~i~~~~~ 349 (373)
+|+...+.+. .+.++.+++..+++ |+||||++|. |++++|+.+++...
T Consensus 122 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 122 LDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp GGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred CCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 9998877664 46677888888887 9999999996 99999999998653
No 315
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.55 E-value=1.4e-07 Score=82.08 Aligned_cols=71 Identities=25% Similarity=0.466 Sum_probs=60.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++++++++++|||++++.+|+++. .|...+....+ ++|++ +|+||+
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~--~~pii------------lv~NK~ 144 (204)
T 3th5_A 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP--NTPII------------LVGTKL 144 (204)
Confidence 3569999999999999999999999999999999999999997 68877776544 45655 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 145 Dl~~~~ 150 (204)
T 3th5_A 145 DLRDDK 150 (204)
Confidence 997654
No 316
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.23 E-value=8.4e-07 Score=76.93 Aligned_cols=113 Identities=22% Similarity=0.331 Sum_probs=97.3
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC---CCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~---~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.+|||+|++.|..+...+++.++++++|||++++.+|+.+..|..++...... .++| +++|+|
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p------------iilv~n 125 (207)
T 1vg8_A 58 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFP------------FVVLGN 125 (207)
T ss_dssp EEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSC------------EEEEEE
T ss_pred EEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCc------------EEEEEE
Confidence 4789999999999999999999999999999999999999999999888776532 2345 459999
Q ss_pred ccccccchhhhhhHHHHHhh-hcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 301 TTCLESFQSVKCYFEEIREQ-RQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 301 K~Dl~~~r~v~~~~~~~~a~-~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
|+|+. .+.+..++.+.++. ..+++|++|||++|.||+++|+.|++.+.
T Consensus 126 K~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 126 KIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp CTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99998 55667777788877 77899999999999999999999998653
No 317
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.22 E-value=9.7e-07 Score=75.68 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=59.3
Q ss_pred cceeeeccCCCCCchhhhhcccc----ccEEEEEEecC-CccchhhHHHHHHHHHhhcc---CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~----a~~~i~v~dvt-~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ 295 (373)
.+.+|||+|+..+......++.. ++++++|||++ +..+|..+..|...+..... ..++|++
T Consensus 92 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 160 (193)
T 2ged_A 92 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL----------- 160 (193)
T ss_dssp TCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE-----------
T ss_pred eEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE-----------
Confidence 45699999999998777776665 89999999999 89999999998877765432 2345655
Q ss_pred eeeccccccccchhh
Q psy16673 296 LLVYSTTCLESFQSV 310 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v 310 (373)
+|+||+|+...+.+
T Consensus 161 -lv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 161 -IACNKSELFTARPP 174 (193)
T ss_dssp -EEEECTTSTTCCCH
T ss_pred -EEEEchHhcCCCCH
Confidence 99999999776654
No 318
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.22 E-value=4.5e-07 Score=78.66 Aligned_cols=69 Identities=25% Similarity=0.345 Sum_probs=59.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+..... .++| +++|+||+
T Consensus 74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p------------iilv~nK~ 140 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLAS-PNIV------------VILCGNKK 140 (200)
T ss_dssp EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC-TTCE------------EEEEEECG
T ss_pred eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCc------------EEEEEECC
Confidence 3577999999999988899999999999999999999999999999988877543 2345 45999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 141 Dl 142 (200)
T 2o52_A 141 DL 142 (200)
T ss_dssp GG
T ss_pred Cc
Confidence 96
No 319
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.4e-06 Score=75.80 Aligned_cols=72 Identities=21% Similarity=0.400 Sum_probs=61.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH-HHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v-~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++..++++++|||++++.+|+++ ..|...+....+ ++|++ +|+||+
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pii------------lv~nK~ 139 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP--NVPII------------LVANKK 139 (207)
T ss_dssp EEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST--TCCEE------------EEEECG
T ss_pred EEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC--CCCEE------------EEEEch
Confidence 467999999999999999999999999999999999999999 558888877543 35554 999999
Q ss_pred ccccchh
Q psy16673 303 CLESFQS 309 (373)
Q Consensus 303 Dl~~~r~ 309 (373)
|+.....
T Consensus 140 Dl~~~~~ 146 (207)
T 2fv8_A 140 DLRSDEH 146 (207)
T ss_dssp GGGGCHH
T ss_pred hhhcccc
Confidence 9976544
No 320
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=8.1e-07 Score=76.42 Aligned_cols=69 Identities=36% Similarity=0.539 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+|||+|++.|..++..++..++++++|||++++.+|+++..|+..+...... .++|+ ++|+||+
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi------------ilv~nK~ 124 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV------------MLVGNKC 124 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE------------EEEEECT
T ss_pred EEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE------------EEEEECc
Confidence 4779999999999999999999999999999999999999999988887775432 24554 4999999
Q ss_pred cc
Q psy16673 303 CL 304 (373)
Q Consensus 303 Dl 304 (373)
|+
T Consensus 125 Dl 126 (199)
T 2gf0_A 125 DE 126 (199)
T ss_dssp TC
T ss_pred cC
Confidence 96
No 321
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.19 E-value=1.1e-06 Score=76.45 Aligned_cols=68 Identities=25% Similarity=0.441 Sum_probs=59.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.+|||+|++.|..++..+++.++++++|||++++.+|+.+..|+..+...... ++| +++|+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p------------iilv~nK~D 136 (213)
T 3cph_A 70 KLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND-EAQ------------LLLVGNKSD 136 (213)
T ss_dssp EEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTT-CSE------------EEEEEECTT
T ss_pred EEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCC------------EEEEEECCC
Confidence 4789999999999999999999999999999999999999999999888876542 345 459999999
Q ss_pred c
Q psy16673 304 L 304 (373)
Q Consensus 304 l 304 (373)
+
T Consensus 137 l 137 (213)
T 3cph_A 137 M 137 (213)
T ss_dssp C
T ss_pred C
Confidence 7
No 322
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.19 E-value=2.8e-07 Score=80.86 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=58.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..+++.++++++|||++++.+|+++..|+..+.......++|+ ++|+||+
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pi------------ilV~NK~ 151 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDI------------VLIGNKA 151 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEE------------EEEEECT
T ss_pred EEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCE------------EEEEECC
Confidence 4578999999999999999999999999999999999999999988877765543334554 5999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 152 D 152 (217)
T 2f7s_A 152 D 152 (217)
T ss_dssp T
T ss_pred c
Confidence 9
No 323
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.19 E-value=8.7e-07 Score=80.25 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=88.0
Q ss_pred ccCCCCCchhhhhccc---------------------cccEEEEEEecCCc--cchhhHHHHHHHHHhhccCCCCCchhh
Q psy16673 230 TCGDLQFPAMRRLSIA---------------------TAHAFLLVYSTTCL--ESFQSVKCYFEEIREQRQDFQFPAMRR 286 (373)
Q Consensus 230 tag~~~~~~~~~~s~~---------------------~a~~~i~v~dvt~~--~S~~~v~~~~~~i~~~~~~~~~p~v~~ 286 (373)
++|+++|..+++.+++ +++++++|||++++ .||+.+..|..++.......++|++
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~pii-- 202 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIV-- 202 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEE--
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEE--
Confidence 7888888888888887 89999999999999 9999999999988876333346655
Q ss_pred ccccccceeeeeccccccccchhhhhhHHHHHhhh-cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR-QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 287 ~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~-~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+||||+|+...+.+ ++++.++.. .+++|+||||++|.||+++|+.|++.+
T Consensus 203 ----------lV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 203 ----------VVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ----------EEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------EEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999887777 467777766 589999999999999999999999854
No 324
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.13 E-value=1.1e-05 Score=79.83 Aligned_cols=101 Identities=8% Similarity=0.013 Sum_probs=58.4
Q ss_pred cceeeeccCCCCCch-hh-h---h-ccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQFPA-MR-R---L-SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~~~-~~-~---~-s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
++-++||+|...... +. . . ....++.+++|.|++...... .....+.+. +|+ ..+
T Consensus 185 DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~-----~~i-----------~gv 245 (504)
T 2j37_W 185 EIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK-----VDV-----------ASV 245 (504)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH-----HCC-----------CCE
T ss_pred cEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh-----cCc-----------eEE
Confidence 355789988764321 11 1 1 122678899999998864321 222222221 221 138
Q ss_pred eccccccccchhhhhhHHHHHhhhcCCe------------------EEEeccCCCcC-HHHHHHHHHHH
Q psy16673 298 VYSTTCLESFQSVKCYFEEIREQRQDFQ------------------LLECSAKDNYN-IKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~------------------~~E~SAktg~n-v~elf~~i~~~ 347 (373)
|.||+|.......... .....++| .+.+||.+|.| ++++++.+.+.
T Consensus 246 VlNK~D~~~~~g~~l~----~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 246 IVTKLDGHAKGGGALS----AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EEECTTSCCCCTHHHH----HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EEeCCccccchHHHHH----HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9999998644322111 12222333 34589999999 99999999864
No 325
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.13 E-value=1.3e-06 Score=81.39 Aligned_cols=111 Identities=8% Similarity=0.122 Sum_probs=93.7
Q ss_pred cceeeeccCCCCC-----chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc-CCCCCchhhccccccceeee
Q psy16673 224 DVDILDTCGDLQF-----PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ-DFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 224 ~~~~~dtag~~~~-----~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~-~~~~p~v~~~~~~~~~~~il 297 (373)
.+.+|||+|++.| ..++..++++++++++|||++++.+|+++..|.+.+..... ..++|++ +
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~pii------------l 120 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF------------V 120 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEE------------E
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEE------------E
Confidence 3569999999988 67888899999999999999999999999888766655432 2235544 9
Q ss_pred ecccccccc--chh----hhhhHHHHHhhhcC---CeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 298 VYSTTCLES--FQS----VKCYFEEIREQRQD---FQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 298 vgnK~Dl~~--~r~----v~~~~~~~~a~~~~---~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
||||+|+.. .|. +..++++.++..+| ++|++|||++ .|+.++|..+++.
T Consensus 121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~ 178 (307)
T 3r7w_A 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCS 178 (307)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHT
T ss_pred EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHH
Confidence 999999977 676 78889999999997 7999999999 8999999998874
No 326
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.09 E-value=1.3e-06 Score=88.50 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=71.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..+++.+|++++|+|++++..-+....|. .+.. .++|++ +++||+|
T Consensus 71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~----~~vPiI------------VViNKiD 133 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YRTPFV------------VAANKID 133 (594)
T ss_dssp EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH----TTCCEE------------EEEECGG
T ss_pred CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH----cCCeEE------------EEecccc
Confidence 4779999999999999999999999999999999943333322222 1221 245655 9999999
Q ss_pred cccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 304 LESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
+.... +...+++|+++|++++.++.+.|..++.
T Consensus 134 l~~~~----------~~~~~~~~~e~sa~~~~~v~~~~~e~i~ 166 (594)
T 1g7s_A 134 RIHGW----------RVHEGRPFMETFSKQDIQVQQKLDTKVY 166 (594)
T ss_dssp GSTTC----------CCCTTCCHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccc----------ccccCCchHHHHHHhHHHHHHHHHHHHH
Confidence 86431 1234678999999999999988877654
No 327
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.02 E-value=4.5e-06 Score=77.50 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=86.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
.+.+||+ +++|..+++.+++++|++++|||++++. +|+.+..|...+.. .++|++ +|+||+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~pii------------lv~NK~ 125 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETV------------MVINKM 125 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEE------------EEECCG
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEE------------EEEeHH
Confidence 5789999 9999999999999999999999999997 78999999887754 245544 999999
Q ss_pred ccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~ 346 (373)
|+.+.+.+ ++.+.++..++ ++|+||||++|.||+++|+.+..
T Consensus 126 DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 126 DLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp GGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 99877765 44556666666 89999999999999999987653
No 328
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.98 E-value=5.8e-06 Score=70.92 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=58.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..+...+++.++++++|||++++.+++++..|...+....+ .|+ ++|+||+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---~pi------------ilv~NK~ 157 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---YII------------ILVANKI 157 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---CEE------------EEEEECT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---CcE------------EEEEECC
Confidence 4578999999999999999999999999999999999999999999988877643 454 4999999
Q ss_pred c
Q psy16673 303 C 303 (373)
Q Consensus 303 D 303 (373)
|
T Consensus 158 D 158 (208)
T 3clv_A 158 D 158 (208)
T ss_dssp T
T ss_pred C
Confidence 9
No 329
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.95 E-value=6.9e-06 Score=71.84 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=76.1
Q ss_pred cceeeeccCCCCCchhhhhcccc----ccEEEEEEecC-CccchhhHHHHHHHHHhhcc---CCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIAT----AHAFLLVYSTT-CLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~----a~~~i~v~dvt-~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|++.+......+++. ++++++|||++ ++.+|..+..|+.++..... ..++|++
T Consensus 56 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i----------- 124 (218)
T 1nrj_B 56 GVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL----------- 124 (218)
T ss_dssp SCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE-----------
T ss_pred eEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEE-----------
Confidence 35699999999998888888877 89999999999 89999999998887766532 2345655
Q ss_pred eeeccccccccchhhh------hhHHHHHhhhcCCeEEEeccCCCcC
Q psy16673 296 LLVYSTTCLESFQSVK------CYFEEIREQRQDFQLLECSAKDNYN 336 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~------~~~~~~~a~~~~~~~~E~SAktg~n 336 (373)
+|+||+|+...+.+. .++.+.++...+++|+||||++|.+
T Consensus 125 -lv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 125 -IACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp -EEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred -EEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999999998776655 5667788888889999999999886
No 330
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.91 E-value=1.4e-05 Score=70.61 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=80.3
Q ss_pred cceeeeccCC------CC----CchhhhhccccccEEEEEEecCCccchhhH--HHHHHHHHhhccCCCCCchhhccccc
Q psy16673 224 DVDILDTCGD------LQ----FPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 224 ~~~~~dtag~------~~----~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v--~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
.+.+|||+|+ ++ +..+. .++..++++++|||++++.+|+.. ..|...+.... .++|+
T Consensus 77 ~~~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~pi-------- 145 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFENRNTIEMTTIT-ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSI-------- 145 (228)
T ss_dssp EEEEEECTTTTTSCGGGCCHHHHHHHH-HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCE--------
T ss_pred eEEEEECCCCcCcccchhhhHHHHHHH-HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcE--------
Confidence 3568999998 33 22333 246778999999999999998632 23444444331 23554
Q ss_pred cceeeeeccccccccchhhhhh---HHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKCY---FEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~~---~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
++|+||+|+...+.+..+ ..+.++...+ ++|++|||++|.||+++|+.|++.+..
T Consensus 146 ----ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 146 ----VIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp ----EEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ----EEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 499999999877766554 4566677777 899999999999999999999987643
No 331
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.90 E-value=5.9e-06 Score=75.95 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+..++|+++|.||||||||+|++++.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 45689999999999999999999944
No 332
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.86 E-value=5.5e-06 Score=75.32 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCChHHHHHHHHhccc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTY 35 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f 35 (373)
++|+++|.+|||||||+|++++...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999995543
No 333
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.81 E-value=1e-05 Score=80.86 Aligned_cols=105 Identities=11% Similarity=0.030 Sum_probs=72.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++...+. ..+.......++|++ +++||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~~ipii------------vviNK~ 144 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLRDTPIL------------TFMNKL 144 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTTTCCEE------------EEEECT
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHcCCCEE------------EEEcCc
Confidence 346799999999999888889999999999999998754332 233333333456655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCe-----EEEeccCCCcCHHHHHHHHHH
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQ-----LLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~-----~~E~SAktg~nv~elf~~i~~ 346 (373)
|+..... .+..+.+...++.+ +..+||+++.||.++++..+.
T Consensus 145 Dl~~~~~--~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~ 191 (529)
T 2h5e_A 145 DRDIRDP--MELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETY 191 (529)
T ss_dssp TSCCSCH--HHHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred CCccccH--HHHHHHHHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence 9966432 12334444544432 445899998888777665443
No 334
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.79 E-value=1.7e-05 Score=66.87 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=78.6
Q ss_pred cceeeeccCCCCCch------h--hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPA------M--RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~------~--~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|++.+.. + ...+++.++++++|||++++.+++. ..|++.+.+... .++|++
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~-~~~p~i----------- 119 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP-AKLPIT----------- 119 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC-TTCCEE-----------
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc-cCCCEE-----------
Confidence 367999999976532 1 1246889999999999999999874 467777766442 345655
Q ss_pred eeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+.... ..++...+++|++|||++|.||+++|+.+.+...
T Consensus 120 -lv~NK~Dl~~~~-------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 120 -VVRNKADITGET-------LGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -EEEECHHHHCCC-------CEEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -EEEECccCCcch-------hhhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 999999985432 1233446789999999999999999999998653
No 335
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.75 E-value=0.00021 Score=69.51 Aligned_cols=88 Identities=13% Similarity=0.005 Sum_probs=50.0
Q ss_pred eeeeccCCCCCch-----hhh-hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 226 DILDTCGDLQFPA-----MRR-LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 226 ~~~dtag~~~~~~-----~~~-~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
-++||+|...... +.. ......+.+++|.|++..... ......+.+..+ ...+|.
T Consensus 186 VIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~~~----------------i~gVIl 246 (443)
T 3dm5_A 186 IIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEATP----------------IGSIIV 246 (443)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHSCT----------------TEEEEE
T ss_pred EEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhhCC----------------CeEEEE
Confidence 3678887544321 211 123346789999999875432 222223322211 123899
Q ss_pred cccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHH
Q psy16673 300 STTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIK 338 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~ 338 (373)
||+|....-.. +.......++|+.+++. |++++
T Consensus 247 TKlD~~~~gG~----~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 247 TKLDGSAKGGG----ALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp ECCSSCSSHHH----HHHHHHTTCCCEEEEEC--SSSTT
T ss_pred ECCCCcccccH----HHHHHHHHCCCEEEEEc--CCChH
Confidence 99998754432 23344567889888875 77664
No 336
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.74 E-value=0.00036 Score=67.44 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
.++++|+|++|+|||||+|.+++..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4679999999999999999998654
No 337
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.74 E-value=2.2e-05 Score=72.85 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=51.9
Q ss_pred cccchhHhHHhhhhhcCeEEEEEeCCChh-hHHHHHHHHHHHHHHhccCCCccEEEecccccccc
Q psy16673 152 GDLQFPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215 (373)
Q Consensus 152 g~~~~~~~~~~~~~~~~~~i~v~dv~~~~-s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~~ 215 (373)
.++++..+...+++++|++++|||++++. +++.+..|+..+.. ..+|++||+||+|+.+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-----~~~~~ilV~NK~DL~~ 124 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-----FKVEPVIVFNKIDLLN 124 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-----TTCEEEEEECCGGGCC
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-----CCCCEEEEEEcccCCC
Confidence 37788888888999999999999999886 99999999987764 4799999999999975
No 338
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.73 E-value=3.1e-05 Score=73.94 Aligned_cols=111 Identities=12% Similarity=0.032 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcccCCceecceecc--eeeeeee---c-ceEEeeeeeEEecc---CCccchhhhcc-
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDL--YSRDFHV---G-AVTIKEIPIVVAGN---KSDMTSHHRAV- 79 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~f~~~~~~t~~d~--~~~~~~~---~-~~~~~~~~~~~~~~---~~~~~~~~~~~- 79 (373)
..+|+++|.+|||||||+|++++..-......+++.. .|+.... + +..+-|.+-..... ..........+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 3479999999999999999999541111112223322 2222211 1 11111111111111 01111111222
Q ss_pred --cccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccc
Q psy16673 80 --HLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMT 120 (373)
Q Consensus 80 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~ 120 (373)
...+.+.|+.+.... ..........+.+.|++++.||.|..
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTV 287 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCccc
Confidence 677888888886222 22233444556788999999999953
No 339
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.68 E-value=7.6e-05 Score=68.51 Aligned_cols=85 Identities=7% Similarity=0.048 Sum_probs=61.2
Q ss_pred hccccccEEEEEEecCCccchhh--HHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHh
Q psy16673 242 LSIATAHAFLLVYSTTCLESFQS--VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE 319 (373)
Q Consensus 242 ~s~~~a~~~i~v~dvt~~~S~~~--v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a 319 (373)
..+..+|+++.|+|+.++.+..+ +.++. .+.| .++|.||+|+..... ...+.+ +-
T Consensus 19 ~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp------------~ilVlNK~DL~~~~~-~~~~~~-~~ 75 (282)
T 1puj_A 19 EKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKP------------RIMLLNKADKADAAV-TQQWKE-HF 75 (282)
T ss_dssp HHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSC------------EEEEEECGGGSCHHH-HHHHHH-HH
T ss_pred HHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCC------------EEEEEECcccCCHHH-HHHHHH-HH
Confidence 46788999999999999988764 33222 1344 459999999976422 122222 22
Q ss_pred hhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 320 QRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 320 ~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+..|++++++||++|.|++++++.+.+...
T Consensus 76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 ENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 345789999999999999999998887653
No 340
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.66 E-value=3.1e-05 Score=64.95 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=80.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.+|||+|++.|..++..++..++++++|||++++...+.... +.... ..++|+ ++|+||+
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~----l~~~~-~~~~p~------------ilv~nK~ 117 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEA----INHAK-AANVPI------------IVAINKM 117 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHH----HHHHG-GGSCCE------------EEEEETT
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH----HHHHH-hCCCCE------------EEEEECc
Confidence 456799999999999999999999999999999998644333322 22211 124554 4999999
Q ss_pred ccccch--hhhh--hHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhhhhccC
Q psy16673 303 CLESFQ--SVKC--YFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQILTTN 354 (373)
Q Consensus 303 Dl~~~r--~v~~--~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~~~~~~ 354 (373)
|+.... .+.. .....++..++ ++|++|||++|.||+++|+.|++.++..+.+
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~ 175 (178)
T 2lkc_A 118 DKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEELK 175 (178)
T ss_dssp TSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhccc
Confidence 996532 1111 11122233344 6899999999999999999999977665543
No 341
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.63 E-value=5e-05 Score=65.40 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=55.1
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++.+..+...+++.++++++|||+++..+|+++..|...+..... ...| +++|+||+|
T Consensus 56 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~------------i~~v~nK~D 121 (199)
T 2f9l_A 56 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIV------------IMLVGNKSD 121 (199)
T ss_dssp EEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECTT
T ss_pred EEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCe------------EEEEEECcc
Confidence 56899999999988888899999999999999999999999889887765432 2344 459999998
No 342
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.62 E-value=5.6e-05 Score=64.50 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=80.5
Q ss_pred ceeeeccC----------CCCCchhhhhccccc---cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 225 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 225 ~~~~dtag----------~~~~~~~~~~s~~~a---~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
+.++||+| ++.|..+...+++.+ +++++|+|++++.++.+.. +.+.+.. .++|+
T Consensus 71 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~-------- 137 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPV-------- 137 (195)
T ss_dssp EEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCE--------
T ss_pred EEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCE--------
Confidence 56899999 666777777777777 8999999999998887653 2223322 23554
Q ss_pred cceeeeeccccccccchhhhh--hH-HHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLESFQSVKC--YF-EEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~~--~~-~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||+|+...+.+.. ++ .+.++...+++|++|||++|.||+++|+.+.+.+
T Consensus 138 ----i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 138 ----IVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp ----EEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----EEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 49999999987766543 22 2335555678999999999999999999999854
No 343
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.57 E-value=7.5e-05 Score=75.25 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
..+..+|+|+|.+|||||||+|++++..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3456889999999999999999999653
No 344
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.56 E-value=8.8e-05 Score=63.56 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=55.0
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
+.+|||+|++++..+.+.+++.++++++|||+++..+|+++..|...+..... ...| +++++||+|
T Consensus 80 ~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~------------i~~v~nK~D 145 (191)
T 1oix_A 80 AQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD-SNIV------------IMLVGNKSD 145 (191)
T ss_dssp EEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCE------------EEEEEECGG
T ss_pred EEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCc------------EEEEEECcc
Confidence 45799999999999999999999999999999999999999888887765432 2334 459999998
No 345
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.50 E-value=9.6e-05 Score=77.95 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=54.7
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|..... .++| +++|+||+|
T Consensus 99 ~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~-----~~~p------------~ilviNK~D 161 (842)
T 1n0u_A 99 LINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG-----ERIK------------PVVVINKVD 161 (842)
T ss_dssp EEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH-----TTCE------------EEEEEECHH
T ss_pred eEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCC------------eEEEEECCC
Confidence 46799999999999999999999999999999999999998776654332 2344 449999999
Q ss_pred ccc
Q psy16673 304 LES 306 (373)
Q Consensus 304 l~~ 306 (373)
+..
T Consensus 162 ~~~ 164 (842)
T 1n0u_A 162 RAL 164 (842)
T ss_dssp HHH
T ss_pred cch
Confidence 863
No 346
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.50 E-value=6.4e-05 Score=74.07 Aligned_cols=50 Identities=8% Similarity=0.041 Sum_probs=35.9
Q ss_pred eeeeccccccch--hHhH--------HhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHH
Q psy16673 145 VDILDTCGDLQF--PAMR--------RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 195 (373)
Q Consensus 145 ~~i~D~~g~~~~--~~~~--------~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~ 195 (373)
..+||..|.+.+ .... ..++..+.+.++|+|.++. +++....|++.+.+.
T Consensus 89 ~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 89 FEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp GGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 678999887432 2222 4556667888999999987 677778888777664
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.50 E-value=1.9e-05 Score=67.09 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=83.6
Q ss_pred ceeeeccC-----------CCCCchhhhhcccc-ccEEEEEEecCCccchhhH-HHHHHH--------HHhhccCCCCCc
Q psy16673 225 VDILDTCG-----------DLQFPAMRRLSIAT-AHAFLLVYSTTCLESFQSV-KCYFEE--------IREQRQDFQFPA 283 (373)
Q Consensus 225 ~~~~dtag-----------~~~~~~~~~~s~~~-a~~~i~v~dvt~~~S~~~v-~~~~~~--------i~~~~~~~~~p~ 283 (373)
+.++||+| ++.|..+...+++. +++++++|++++..+|+++ ..|... +.......++|+
T Consensus 46 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 125 (190)
T 2cxx_A 46 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPT 125 (190)
T ss_dssp EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCce
Confidence 45777777 66677777888887 9999999999999999887 446542 222222234554
Q ss_pred hhhccccccceeeeeccccccccchhhhhhHHHHHhhhcCCe-------EEEeccCCCcCHHHHHHHHHHHh
Q psy16673 284 MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-------LLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 284 v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~-------~~E~SAktg~nv~elf~~i~~~~ 348 (373)
++|+||+|+...+ .+..+.++...+++ |++|||++|.||+++|+.+++.+
T Consensus 126 ------------ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 126 ------------IVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ------------EEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------EEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 4999999997765 45667777777764 79999999999999999999865
No 348
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.49 E-value=0.00012 Score=69.69 Aligned_cols=110 Identities=11% Similarity=0.045 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcccCC-ceecceecc--eeeeeee---c-ceEEeeeeeEEecc----CCccchhhh--
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNTYSD-RYRSTVEDL--YSRDFHV---G-AVTIKEIPIVVAGN----KSDMTSHHR-- 77 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~f~~-~~~~t~~d~--~~~~~~~---~-~~~~~~~~~~~~~~----~~~~~~~~~-- 77 (373)
.+|+++|.+|||||||+|++++..... ...++++.. .|+.... + +..+-|-+-....+ ....+....
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 579999999999999999998653211 112223322 2222211 1 11111111111111 001111111
Q ss_pred cccccceeeeeeecccc---chhhhhccccCCCcceEEEeccCccc
Q psy16673 78 AVHLEDVSEWLYCELPK---LRYVIQSSSFGDEIPIVVAGNKSDMT 120 (373)
Q Consensus 78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~nk~d~~ 120 (373)
.....+...|+.+.... ..........+.+.|++++.||.|..
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~ 286 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTI 286 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCE
T ss_pred cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccc
Confidence 14566777788775222 12222344556789999999999954
No 349
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.47 E-value=0.0035 Score=60.43 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...++|+|++|+|||||+|.+++-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999953
No 350
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.46 E-value=8.7e-05 Score=73.40 Aligned_cols=107 Identities=9% Similarity=0.028 Sum_probs=68.0
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhH--HHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v--~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
...+.++||+|++.|......++..+|++++|+|++++.++..+ ..+..+........++ +++|+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~-----------~~iIvvi 178 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-----------HNLIIAM 178 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC-----------CCEEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC-----------CcEEEEE
Confidence 34578999999999999999999999999999999997654331 1111111111111111 2356999
Q ss_pred cccccccchhhhhhHHH----HHhhhc-----CCeEEEeccCCCcCHHH
Q psy16673 300 STTCLESFQSVKCYFEE----IREQRQ-----DFQLLECSAKDNYNIKE 339 (373)
Q Consensus 300 nK~Dl~~~r~v~~~~~~----~~a~~~-----~~~~~E~SAktg~nv~e 339 (373)
||+|+.+.+....++.. .+.... +++|++|||++|.||++
T Consensus 179 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999764443322222 222222 57899999999999985
No 351
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.46 E-value=0.0004 Score=63.20 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
.|+++|+|++|+|||||+|.+++..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998543
No 352
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.44 E-value=0.0001 Score=72.69 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=74.2
Q ss_pred ccceeeeccCCCCCchh--------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~--------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|+..+... +..++..+|++++|+|++++.+++++..+...+.... ++|+
T Consensus 281 ~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~pi----------- 346 (476)
T 3gee_A 281 TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKF----------- 346 (476)
T ss_dssp EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEE-----------
T ss_pred eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCE-----------
Confidence 34789999999876543 3447899999999999999999986555544444332 3454
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+.+.. +.++....+++++|||++|.||+++|+.+.+.+.
T Consensus 347 -IvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 347 -LTVANKLDRAANADALI---RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp -EEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred -EEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 49999999987766532 3344443378999999999999999999998765
No 353
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.42 E-value=0.0002 Score=59.53 Aligned_cols=104 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred ceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+.+|||+|++.|. .+...+++ +++++++|+|+++.. ....|..++.+. ++|++
T Consensus 52 l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~----~~p~i------------ 112 (165)
T 2wji_A 52 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLMEM----GANLL------------ 112 (165)
T ss_dssp EEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT----TCCEE------------
T ss_pred EEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHhc----CCCEE------------
Confidence 5699999999885 45566665 789999999998753 344566666542 35555
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+.. +++.+++.++++|+||||++|.||+++|+.+++..
T Consensus 113 lv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 113 LALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999987777664 47788888899999999999999999999999854
No 354
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.42 E-value=0.0019 Score=62.70 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+..-|+++|.+||||||++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999987
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.41 E-value=0.0006 Score=66.28 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+++|.+||||||+++.+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 356
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.32 E-value=0.00019 Score=64.85 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=50.0
Q ss_pred cceeeeccCCCCCchhhhhccc---------cccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIA---------TAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~---------~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
.+.++||+|+..|..+...+++ +++++++|++++... +.... .|.+.+....+... ..
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~-----------~~ 152 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEI-----------WC 152 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG-----------GG
T ss_pred eEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh-----------hc
Confidence 4569999999888655444433 789999999998765 55543 57777777654311 12
Q ss_pred eeeeeccccccccc
Q psy16673 294 AFLLVYSTTCLESF 307 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~ 307 (373)
++++|+||+|+...
T Consensus 153 ~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 153 KTLLVLTHAQFSPP 166 (262)
T ss_dssp GEEEEEECTTCCCS
T ss_pred CEEEEEeCcccCCC
Confidence 35599999998543
No 357
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.32 E-value=0.00042 Score=69.19 Aligned_cols=87 Identities=15% Similarity=0.065 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+.+....|.. +.. .++|++ +|+||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~----~~iPii------------vviNK~ 144 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL----RHTPIM------------TFINKM 144 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT----TTCCEE------------EEEECT
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH----cCCCEE------------EEEeCC
Confidence 457799999999999999999999999999999999988887765542 222 245655 999999
Q ss_pred ccccchhhhhhHHHHHhhhcCCeEEE
Q psy16673 303 CLESFQSVKCYFEEIREQRQDFQLLE 328 (373)
Q Consensus 303 Dl~~~r~v~~~~~~~~a~~~~~~~~E 328 (373)
|+..... .+..+.+...++..+..
T Consensus 145 Dl~~~~~--~~~l~ei~~~l~~~~~~ 168 (528)
T 3tr5_A 145 DRDTRPS--IELLDEIESILRIHCAP 168 (528)
T ss_dssp TSCCSCH--HHHHHHHHHHHCCEEEE
T ss_pred CCccccH--HHHHHHHHHhhCCCcee
Confidence 9965432 22234455555554443
No 358
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.22 E-value=0.00029 Score=57.75 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=75.0
Q ss_pred cceeeeccCCCCC-------chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 224 DVDILDTCGDLQF-------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 224 ~~~~~dtag~~~~-------~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
.+.++||+|+..+ ......+++.++++++|||++++.+.... .+.+.+.. .++|+ +
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~p~------------i 112 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADY-EVAEYLRR----KGKPV------------I 112 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHH-HHHHHHHH----HTCCE------------E
T ss_pred eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHH-HHHHHHHh----cCCCE------------E
Confidence 4679999998873 33455678999999999999997655331 12223322 23454 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCC-eEEEeccCCCcCHHHHHHHHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDF-QLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~-~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||+|+...+ ++.+.++ ..++ +|+||||++|.|++++|+.+++.
T Consensus 113 lv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 113 LVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp EEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred EEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 999999997652 3445555 5677 89999999999999999999874
No 359
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.21 E-value=0.00013 Score=65.88 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred ccceeeeccCCCCCch----------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 223 EDVDILDTCGDLQFPA----------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~----------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
..+.++||+|+..+.. +...++ ..+|++++|+|+++..++..+.. .+.+ .++|++
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvi------ 114 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVV------ 114 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEE------
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEE------
Confidence 3678999999988864 455666 88999999999999665544333 2222 245655
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHH
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTL 347 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~ 347 (373)
+|+||+|+...+.+... .+.+++.+|+|+++|||++|.|++++|+.+.+.
T Consensus 115 ------lv~NK~Dl~~~~~~~~~-~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 115 ------VALNMMDIAEHRGISID-TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------EEEECHHHHHHTTCEEC-HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------EEEEChhcCCcCCcHHH-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999877765543 455888889999999999999999999999884
No 360
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.21 E-value=0.00032 Score=65.11 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=89.5
Q ss_pred ceeeeccCCCCCc----------hhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 225 VDILDTCGDLQFP----------AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 225 ~~~~dtag~~~~~----------~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
+.++||+|+..+. .....++..+|++++|+|++++.++++...|.+.+.. .++|++
T Consensus 61 i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvi---------- 126 (308)
T 3iev_A 61 IIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVI---------- 126 (308)
T ss_dssp EEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEE----------
T ss_pred EEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEE----------
Confidence 5589999987655 4566788999999999999999999988777776655 245555
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+....+..+.+++..+ .++++|||++|.|++++|+.+.+.+.
T Consensus 127 --lV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 127 --VVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp --EEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred --EEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 999999998556666677778888776 88999999999999999999998653
No 361
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.18 E-value=0.00017 Score=70.35 Aligned_cols=109 Identities=14% Similarity=0.050 Sum_probs=78.5
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhcc---CCCCCchhhccccccceeeee
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ---DFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~---~~~~p~v~~~~~~~~~~~ilv 298 (373)
...+.++||+|++.|......++..+|++++|+|+++ .+|+++..|..+..++.. ..++ ++++++
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~-----------~~iivv 150 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGL-----------DQLIVA 150 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTC-----------TTCEEE
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCC-----------CeEEEE
Confidence 3457899999999999888889999999999999999 778766655444333221 1122 235599
Q ss_pred ccccccccc-----h-hhhhhHHHHHhhhcC-----CeEEEeccCCCcCHHHHHH
Q psy16673 299 YSTTCLESF-----Q-SVKCYFEEIREQRQD-----FQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 299 gnK~Dl~~~-----r-~v~~~~~~~~a~~~~-----~~~~E~SAktg~nv~elf~ 342 (373)
+||+|+.+. + ....++.+.+....+ ++|++|||++|.|+.++++
T Consensus 151 iNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 151 VNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp EECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred EEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 999999652 1 222344555555555 7899999999999986543
No 362
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.17 E-value=0.00074 Score=65.05 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=85.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++.++.....+...+..... .| +++|+||+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~---~~------------iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV---KN------------LIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC---CC------------EEEEEECG
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC---CC------------EEEEEECc
Confidence 4567999999999999999999999999999999999888777777665554321 13 55999999
Q ss_pred ccccchhhhhh--HHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 303 CLESFQSVKCY--FEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 303 Dl~~~r~v~~~--~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+.+....... +.+.+... .+++++++||++|.|++++|+.|.+....
T Consensus 140 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 140 DVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred cccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 99765432221 22222211 26799999999999999999999985543
No 363
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.15 E-value=0.00013 Score=75.31 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=55.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+++....|.. +.. .++|++ +|+||+
T Consensus 75 ~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~i------------lviNK~ 137 (693)
T 2xex_A 75 HRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRI------------VFVNKM 137 (693)
T ss_dssp EEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEE------------EEEECT
T ss_pred eeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEE------------EEEECC
Confidence 356799999999999988999999999999999999998887766653 332 245544 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 98654
No 364
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.15 E-value=0.0032 Score=58.00 Aligned_cols=91 Identities=11% Similarity=-0.031 Sum_probs=52.4
Q ss_pred ceeeeccCCCC--Cc-hhhh-----hccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQ--FP-AMRR-----LSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~--~~-~~~~-----~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+-++||+|... .. .+.. .....++.+++|.|.+.. ++.-...+.+... .|+ ..
T Consensus 183 ~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~~-----~~i-----------~g 243 (297)
T 1j8m_F 183 IIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQA-----SKI-----------GT 243 (297)
T ss_dssp EEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHHT-----CTT-----------EE
T ss_pred EEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHhh-----CCC-----------CE
Confidence 34788888766 31 1111 123467889999998753 2222222232221 221 23
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHH
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~el 340 (373)
+|.||+|....-. .....+...++|+.+++ +|++++++
T Consensus 244 vVlnk~D~~~~~g----~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 244 IIITKMDGTAKGG----GALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp EEEECGGGCTTHH----HHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred EEEeCCCCCcchH----HHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 7889999764322 23456677788988877 68887643
No 365
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.11 E-value=0.00077 Score=61.12 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=48.9
Q ss_pred cceeeeccCCCCCchhhh---------hccccccEEEEEEecCCccchhhHH-HHHHHHHhhccC-CCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQFPAMRR---------LSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQD-FQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~---------~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~-~~~p~v~~~~~~~~ 292 (373)
.+.++||+|...+..+.. ....++|++++|+|++.. ++.... .|.+.+....+. ..+|
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~---------- 156 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNK---------- 156 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGG----------
T ss_pred EEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccC----------
Confidence 478999999987754322 124579999999999764 465443 577777665432 1134
Q ss_pred ceeeeeccccccccch
Q psy16673 293 HAFLLVYSTTCLESFQ 308 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r 308 (373)
+++|+||+|+...+
T Consensus 157 --iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 157 --AIVALTHAQFSPPD 170 (270)
T ss_dssp --EEEEEECCSCCCGG
T ss_pred --EEEEEECcccCCcC
Confidence 55999999986544
No 366
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.09 E-value=0.00044 Score=69.23 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
...+.++||+|++.|..+...+++.++++++|||+++. +.+..|..++....+ ++|++ +||||
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~--~~pvi------------lV~NK 159 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG--KSPVI------------VVMNK 159 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS--SCCEE------------EEECC
T ss_pred eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC--CCCEE------------EEEEC
Confidence 34578999999999999999999999999999999864 677788888887754 35655 99999
Q ss_pred ccc
Q psy16673 302 TCL 304 (373)
Q Consensus 302 ~Dl 304 (373)
+|+
T Consensus 160 ~Dl 162 (535)
T 3dpu_A 160 IDE 162 (535)
T ss_dssp TTT
T ss_pred CCc
Confidence 996
No 367
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.08 E-value=0.00039 Score=69.40 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=82.5
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|++.|..++..++..+|++++|+|++++...+....|.... ..++|++ +|+||+|
T Consensus 53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~-----~~~vPiI------------VViNKiD 115 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAK-----DAHVPIV------------LAINKCD 115 (537)
T ss_dssp CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHH-----TTTCCEE------------ECCBSGG
T ss_pred EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHH-----HcCCcEE------------EEEeccc
Confidence 5789999999999999999999999999999999988776665443221 2245544 9999999
Q ss_pred cccchh--hhhhHHHH--Hhhhc--CCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 304 LESFQS--VKCYFEEI--REQRQ--DFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 304 l~~~r~--v~~~~~~~--~a~~~--~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+...+. +..+.... .+..+ .++|++|||++|.|++++|+.+..++....
T Consensus 116 l~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~ 170 (537)
T 3izy_P 116 KAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLE 170 (537)
T ss_dssp GTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhccc
Confidence 865322 22111111 11222 368999999999999999999999876543
No 368
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.08 E-value=0.00047 Score=60.08 Aligned_cols=109 Identities=8% Similarity=-0.017 Sum_probs=75.2
Q ss_pred cceeeeccCC----------CCCchhhhhcccc---ccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 224 DVDILDTCGD----------LQFPAMRRLSIAT---AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 224 ~~~~~dtag~----------~~~~~~~~~s~~~---a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
.+.++||+|. +.|..+...++.. ++++++|+|++++.+... ..+...+.. .++|+
T Consensus 80 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~------- 147 (223)
T 4dhe_A 80 VAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPI------- 147 (223)
T ss_dssp SEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCE-------
T ss_pred cEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCE-------
Confidence 4668999994 3334555566665 677999999998655332 234444433 23454
Q ss_pred ccceeeeeccccccccchhhh---hhHHHHHhhh------cCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 291 TAHAFLLVYSTTCLESFQSVK---CYFEEIREQR------QDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~---~~~~~~~a~~------~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+.+. ....+.+... .++++++|||++|.||+++|+.|.+...
T Consensus 148 -----i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 148 -----HSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp -----EEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred -----EEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 4999999997665532 2233444442 6789999999999999999999998653
No 369
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.05 E-value=0.00071 Score=62.57 Aligned_cols=106 Identities=14% Similarity=0.062 Sum_probs=75.7
Q ss_pred cceeeeccCCCC--------CchhhhhccccccEEEEEEecCCccchhhHHHHH-HHHHhhccCCCCCchhhccccccce
Q psy16673 224 DVDILDTCGDLQ--------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF-EEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 224 ~~~~~dtag~~~--------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~-~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
++.++||+|... +......+++.+|++++|+|++++.+.. ..|. +.+.+.. .++|++
T Consensus 56 ~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~i---------- 121 (301)
T 1wf3_A 56 QIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPIL---------- 121 (301)
T ss_dssp EEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEE----------
T ss_pred EEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEE----------
Confidence 356899999876 3445667899999999999999986654 3333 4444332 235555
Q ss_pred eeeeccccccccchh-hhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 295 FLLVYSTTCLESFQS-VKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~-v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+. + .+..+.+ ....++++|||++|.|++++|+.+.+.+
T Consensus 122 --lV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 122 --LVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp --EEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred --EEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 9999999976544 3 2222333 2235899999999999999999999753
No 370
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.04 E-value=0.00048 Score=62.75 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=79.5
Q ss_pred ccceeeeccCCCCCchh----------hhhc--cccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 223 EDVDILDTCGDLQFPAM----------RRLS--IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~----------~~~s--~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
..+.++||+|+..+..+ ...+ ...++++++|+|+++..++..+ ..++.+. ++|++
T Consensus 50 ~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~----~~p~i------ 116 (274)
T 3i8s_A 50 HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL----GIPCI------ 116 (274)
T ss_dssp CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH----TCCEE------
T ss_pred CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc----CCCEE------
Confidence 35678999999887732 2223 2689999999999996554433 3333332 45655
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+.. ..+.+++.+|+|+++|||++|.|++++|+.+.+.+
T Consensus 117 ------vv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 117 ------VALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ------EEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ------EEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999977666543 35778888899999999999999999999998754
No 371
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.01 E-value=0.00054 Score=59.57 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=57.7
Q ss_pred ccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEecccc-ccccccccccccc
Q psy16673 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNKS-DMTSHHRAVHLED 224 (373)
Q Consensus 149 D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK~-Dl~~~~r~~~~~~ 224 (373)
+.+||+.++.++..||.++|++|+|.|.+|..-++ .+.-++++...... ...+|+.|.+||. |+.. . .+..
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--A-ms~~- 182 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--R-MPCF- 182 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--B-CCHH-
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--C-CCHH-
Confidence 45689999999999999999999999999986444 22222233333222 2578999999996 6753 1 1111
Q ss_pred ceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHH
Q psy16673 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYF 269 (373)
Q Consensus 225 ~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~ 269 (373)
++.+..+.. .+. -+-.|...++...+...+.-.|.
T Consensus 183 -EI~e~L~L~--------~l~-R~W~Iq~csA~TGeGL~EGLdWL 217 (227)
T 3l82_B 183 -YLAHELHLN--------LLN-HPWLVQDTEAETLTGFLNGIEWI 217 (227)
T ss_dssp -HHHHHTTGG--------GGC-SCEEEEEEETTTCTTHHHHHHHH
T ss_pred -HHHHHcCCc--------CCC-CCEEEEEeECCCCcCHHHHHHHH
Confidence 111111111 111 23455566777777776666665
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.01 E-value=0.00028 Score=69.46 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=63.5
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCc---cchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeec
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL---ESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVY 299 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~---~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvg 299 (373)
..+.++||+|++.|.......+..+|++++|+|++++ .+|+....+.+.+.... ..++| .+|+++
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp-----------~iivvi 188 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGIN-----------HLVVVI 188 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCS-----------SEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCC-----------EEEEEE
Confidence 4578999999999998888889999999999999997 45654333333332221 12344 245999
Q ss_pred cccccccc-----h-hhhhhHHHHHhhhc-------CCeEEEeccCCCcCHHHHH
Q psy16673 300 STTCLESF-----Q-SVKCYFEEIREQRQ-------DFQLLECSAKDNYNIKEVF 341 (373)
Q Consensus 300 nK~Dl~~~-----r-~v~~~~~~~~a~~~-------~~~~~E~SAktg~nv~elf 341 (373)
||+|+... + ....++.+.+.... +++|++|||++|.|++++|
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99998531 1 12222334444433 4789999999999998865
No 373
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.00 E-value=0.0006 Score=68.98 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=87.2
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|...... ++|+ ++|+||+|
T Consensus 72 ~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipi------------IvViNKiD 134 (599)
T 3cb4_D 72 QLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEV------------VPVLNKID 134 (599)
T ss_dssp EEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEE------------EEEEECTT
T ss_pred EEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCE------------EEeeeccC
Confidence 467999999999999999999999999999999999999998888765532 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+...+ ..+..+.++..+++ +++++||++|.||+++|+.+++...
T Consensus 135 l~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 135 LPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp STTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 97654 22334556666676 4999999999999999999998643
No 374
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.99 E-value=0.00084 Score=66.20 Aligned_cols=105 Identities=16% Similarity=0.072 Sum_probs=76.3
Q ss_pred ccceeeeccCCC-CCch--------hhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 223 EDVDILDTCGDL-QFPA--------MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 223 ~~~~~~dtag~~-~~~~--------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
..+.++||+|+. .+.. ....++..+|++++|+|++++.++++.. +.+.+ .+.|+
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~pi---------- 353 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI------KNKRY---------- 353 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSE----------
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh------cCCCE----------
Confidence 347899999998 6542 3456789999999999999999887643 22222 13454
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
++|+||+|+... +..++.+.+.. .++++++|||++|.||+++|+.|.+.+.
T Consensus 354 --ivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 354 --LVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp --EEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred --EEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 499999999653 22233333322 4578999999999999999999998643
No 375
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.98 E-value=0.00067 Score=68.58 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=86.9
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.+|++++|+|++++.+++....|...... ++|+ ++|+||+|
T Consensus 74 ~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipi------------IvviNKiD 136 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVI------------IPVINKID 136 (600)
T ss_dssp EEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEE------------EEEEECTT
T ss_pred EEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCE------------EEEEeccC
Confidence 466999999999998888899999999999999999999988888765532 3454 49999999
Q ss_pred cccchhhhhhHHHHHhhhcCC---eEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 304 LESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 304 l~~~r~v~~~~~~~~a~~~~~---~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+...+ .....+.++..+++ +++++||++|.||+++|+.+++.+.
T Consensus 137 l~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 137 LPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp STTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 97654 22334556666676 4999999999999999999998653
No 376
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.97 E-value=0.0014 Score=63.21 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=79.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+. ..+...+... ++| .+++++||+
T Consensus 75 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~----~ip-----------~iivviNK~ 138 (405)
T 2c78_A 75 RHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVP-----------YIVVFMNKV 138 (405)
T ss_dssp CEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCC-----------CEEEEEECG
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCC-----------EEEEEEECc
Confidence 457799999999998888889999999999999999875544 3344443332 344 134999999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCCcC------------------HHHHHHHHHHHh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDNYN------------------IKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg~n------------------v~elf~~i~~~~ 348 (373)
|+..... ...++.+.+....+ ++++++||++|.| ++++++.+.+..
T Consensus 139 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 139 DMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 9974322 12233444554444 7899999999998 788888887744
No 377
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.97 E-value=0.00058 Score=67.55 Aligned_cols=109 Identities=20% Similarity=0.194 Sum_probs=79.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..++...+..+|++++|+|++++...+....|.. +. ..++|+ ++++||+
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~-~~----~~~vPi------------IVviNKi 113 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQH-AK----AAQVPV------------VVAVNKI 113 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHH-HH----HTTCCE------------EEEEECS
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHH-HH----hcCceE------------EEEEEec
Confidence 357899999999999999999999999999999999665555444322 11 124554 4999999
Q ss_pred ccccc--hhhhhhH--HHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 303 CLESF--QSVKCYF--EEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~--r~v~~~~--~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
|+... +.+..+. ...++..++ ++|++|||++|.|++++|+.++..+
T Consensus 114 Dl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~~ 165 (501)
T 1zo1_I 114 DKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQA 165 (501)
T ss_dssp SSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTTC
T ss_pred cccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhhh
Confidence 98643 2222221 112233343 7999999999999999999998654
No 378
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00071 Score=68.75 Aligned_cols=108 Identities=11% Similarity=0.080 Sum_probs=70.3
Q ss_pred ccccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---chhhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 221 HLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 221 ~~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
....+.++||+|++.|......++..+|++++|+|++++. +|.....+.+.+..... .++ +++|+
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi-----------~~iIV 310 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI-----------HNLII 310 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC-----------CEEEE
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC-----------CeEEE
Confidence 3446789999999999999999999999999999999852 22111111111111111 112 23569
Q ss_pred eccccccccchhhhh----hHHHHHhhhc-----CCeEEEeccCCCcCHHHH
Q psy16673 298 VYSTTCLESFQSVKC----YFEEIREQRQ-----DFQLLECSAKDNYNIKEV 340 (373)
Q Consensus 298 vgnK~Dl~~~r~v~~----~~~~~~a~~~-----~~~~~E~SAktg~nv~el 340 (373)
|+||+|+...+.... ++...+.... +++|++|||++|.||+++
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999999976432221 1222222222 469999999999999876
No 379
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.001 Score=56.15 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=83.9
Q ss_pred ceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 225 VDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 225 ~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
+.+|||+|++.|. .++..++. .++++++++|.++ ++....|...+.. .++|+ +
T Consensus 56 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~pi------------i 116 (188)
T 2wjg_A 56 FKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANL------------L 116 (188)
T ss_dssp EEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCE------------E
T ss_pred EEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCE------------E
Confidence 5689999999885 45556664 4899999999885 5666667766654 23454 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|+||+|+...+.+. ...+.+++..+++|++|||++|.||+++|+.+++.+..
T Consensus 117 lv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 117 LALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp EEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred EEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence 999999998777665 46778888889999999999999999999999987643
No 380
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.81 E-value=0.0012 Score=68.10 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=56.1
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|++++.+++....|... .. .++|++ +|+||+
T Consensus 77 ~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~----~~~p~i------------vviNKi 139 (691)
T 1dar_A 77 HRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK----YKVPRI------------AFANKM 139 (691)
T ss_dssp EEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH----TTCCEE------------EEEECT
T ss_pred eEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH----cCCCEE------------EEEECC
Confidence 4567999999999999999999999999999999999998887766643 22 245554 999999
Q ss_pred ccccch
Q psy16673 303 CLESFQ 308 (373)
Q Consensus 303 Dl~~~r 308 (373)
|+...+
T Consensus 140 D~~~~~ 145 (691)
T 1dar_A 140 DKTGAD 145 (691)
T ss_dssp TSTTCC
T ss_pred CcccCC
Confidence 986543
No 381
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.77 E-value=0.0015 Score=62.87 Aligned_cols=111 Identities=9% Similarity=-0.061 Sum_probs=80.9
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|+++....+....| ..+.. .++|. +++++||+
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~-----------iivviNK~ 129 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEH-----------VVVYVNKA 129 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCC-----------EEEEEECG
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCe-----------EEEEEECc
Confidence 4577999999999988888889999999999999998766555444 23322 23442 34899999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCCcC----------HHHHHHHHHHHhh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDNYN----------IKEVFRTFLTLSQ 349 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg~n----------v~elf~~i~~~~~ 349 (373)
|+..... ...++.+.+....+ ++|+++||++|.| ++++|+.+.+...
T Consensus 130 Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 130 DAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 9974321 12234455555554 6999999999876 8999999988543
No 382
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.74 E-value=0.0016 Score=63.26 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=74.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+.. .+...+... ++ +++++|+||+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~~l~~~~~~----~~-----------~~iIvviNK~ 167 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHSYIASLL----GI-----------KHIVVAINKM 167 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHHHHHHHT----TC-----------CEEEEEEECT
T ss_pred ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc----CC-----------CeEEEEEEcC
Confidence 3577999999999988888889999999999999997654433 233322221 12 2356999999
Q ss_pred ccccch--hh--hhhHHHHHhhhcC-----CeEEEeccCCCcCHHHHH
Q psy16673 303 CLESFQ--SV--KCYFEEIREQRQD-----FQLLECSAKDNYNIKEVF 341 (373)
Q Consensus 303 Dl~~~r--~v--~~~~~~~~a~~~~-----~~~~E~SAktg~nv~elf 341 (373)
|+.+.. .+ ..++.+.+.+..+ +++++|||++|.|++++|
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 996521 11 2344555666666 789999999999999853
No 383
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.68 E-value=0.00094 Score=60.46 Aligned_cols=82 Identities=5% Similarity=-0.001 Sum_probs=56.6
Q ss_pred hhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhhhhhHHHHHhh
Q psy16673 241 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ 320 (373)
Q Consensus 241 ~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~ 320 (373)
......+|.++.|+|+.++.+..+.. + - ++ +++.++|.||+|+.+... ...+.+.+ +
T Consensus 16 ~~~l~~~D~vl~VvDar~P~~~~~~~-----l---------~-ll------~k~~iivlNK~DL~~~~~-~~~~~~~~-~ 72 (262)
T 3cnl_A 16 KDLLRLVNTVVEVRDARAPFATSAYG-----V---------D-FS------RKETIILLNKVDIADEKT-TKKWVEFF-K 72 (262)
T ss_dssp HHHHTTCSEEEEEEETTSTTTTSCTT-----S---------C-CT------TSEEEEEEECGGGSCHHH-HHHHHHHH-H
T ss_pred HHHHhhCCEEEEEeeCCCCCcCcChH-----H---------H-hc------CCCcEEEEECccCCCHHH-HHHHHHHH-H
Confidence 34577899999999999987764321 0 0 00 345669999999976432 22222222 3
Q ss_pred hcCCeEEEeccCCCcCHHHHHHHHHH
Q psy16673 321 RQDFQLLECSAKDNYNIKEVFRTFLT 346 (373)
Q Consensus 321 ~~~~~~~E~SAktg~nv~elf~~i~~ 346 (373)
..|+++ .+||++|.|++++++.+..
T Consensus 73 ~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 73 KQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 457888 9999999999999887754
No 384
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.68 E-value=0.0021 Score=58.41 Aligned_cols=105 Identities=17% Similarity=0.127 Sum_probs=83.7
Q ss_pred cceeeeccCCCCCc------hhhhhccc--cccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFP------AMRRLSIA--TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~------~~~~~s~~--~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|+..+. .+++.++. .++++++|+|+++..++ ..|..++.+ .++|++
T Consensus 50 ~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~i----------- 111 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVT----------- 111 (272)
T ss_dssp TEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEE-----------
T ss_pred eEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEE-----------
Confidence 46699999999886 45666665 59999999999986543 345555544 245655
Q ss_pred eeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 296 LLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 296 ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.+. .+.+.+++.+|+++++|||++|.||+++|+.+++.+
T Consensus 112 -lv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 112 -IALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp -EEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred -EEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 999999998777766 466888899999999999999999999999999854
No 385
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.65 E-value=0.001 Score=65.29 Aligned_cols=102 Identities=10% Similarity=0.027 Sum_probs=70.2
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---chh----hHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SFQ----SVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~~----~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
..+.++||+|++.|......++..+|++++|+|++++. +|+ ....+ ..+.. .++| ++
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~----~~v~-----------~i 148 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT----LGVR-----------QL 148 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH----TTCC-----------EE
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH----cCCC-----------eE
Confidence 45789999999999998889999999999999999863 442 22222 11111 1233 25
Q ss_pred eeeccccccccc---h-hhhhhHHHHHhhhcC-----CeEEEeccCCCcCHHHH
Q psy16673 296 LLVYSTTCLESF---Q-SVKCYFEEIREQRQD-----FQLLECSAKDNYNIKEV 340 (373)
Q Consensus 296 ilvgnK~Dl~~~---r-~v~~~~~~~~a~~~~-----~~~~E~SAktg~nv~el 340 (373)
++|+||+|+.+. + ....++.+.+....+ ++|++|||++|.|+.++
T Consensus 149 ivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 149 IVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 599999999731 1 122233444444444 78999999999999754
No 386
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.64 E-value=0.0016 Score=61.25 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=83.5
Q ss_pred ceeeeccCC----CCCchhhhhc---cccccEEEEEEecCC---ccchhhHHHHHHHHHhhccC-CCCCchhhccccccc
Q psy16673 225 VDILDTCGD----LQFPAMRRLS---IATAHAFLLVYSTTC---LESFQSVKCYFEEIREQRQD-FQFPAMRRLSIATAH 293 (373)
Q Consensus 225 ~~~~dtag~----~~~~~~~~~s---~~~a~~~i~v~dvt~---~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~~~ 293 (373)
+.++||+|. ..+..+...+ +..++++++|+|+++ +.+++++..|..++..+.+. ..+|++
T Consensus 208 ~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i--------- 278 (342)
T 1lnz_A 208 FVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI--------- 278 (342)
T ss_dssp EEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC---------
T ss_pred EEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE---------
Confidence 557888874 3344444444 445899999999999 88999999999999887542 356655
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcC--CeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQD--FQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~--~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+ +..+.+++.++ +++++|||++|.|++++|+.|.+.+.
T Consensus 279 ---lV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 279 ---IVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE 329 (342)
T ss_dssp ---BEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred ---EEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence 999999997654 23455555555 78999999999999999999998764
No 387
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.63 E-value=0.00075 Score=62.52 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=56.0
Q ss_pred hhhhhccccccEEEEEEecCCccchhh-HHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchh---hhhh
Q psy16673 238 AMRRLSIATAHAFLLVYSTTCLESFQS-VKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQS---VKCY 313 (373)
Q Consensus 238 ~~~~~s~~~a~~~i~v~dvt~~~S~~~-v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~---v~~~ 313 (373)
.+.+....++|.+++|+|+.++....+ +..+.-.. ...++| .++|.||+||.+... ....
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~------------~vivlnK~DL~~~~~~~~~~~~ 141 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQ------------PIICITKMDLIEDQDTEDTIQA 141 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCE------------EEEEEECGGGCCCHHHHHHHHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCC------------EEEEEECCccCchhhhHHHHHH
Confidence 334456889999999999997665443 33222211 112333 459999999976532 1222
Q ss_pred HHHHHhhhcCCeEEEeccCCCcCHHHHHH
Q psy16673 314 FEEIREQRQDFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 314 ~~~~~a~~~~~~~~E~SAktg~nv~elf~ 342 (373)
..+.+ +..|.+.+.+||++|.|++++++
T Consensus 142 ~~~~y-~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 142 YAEDY-RNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp HHHHH-HHHTCCEEECCHHHHTTCTTTGG
T ss_pred HHHHH-HhCCCeEEEEecCCCCCHHHHHh
Confidence 22222 24578999999999999887764
No 388
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.63 E-value=0.00087 Score=65.36 Aligned_cols=109 Identities=17% Similarity=0.047 Sum_probs=71.2
Q ss_pred cccceeeeccCCCCCchhhhhccccccEEEEEEecCCccc---hhhHHHHHHHHHhhccCCCCCchhhccccccceeeee
Q psy16673 222 LEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES---FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV 298 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S---~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilv 298 (373)
...+.++||+|++.|......++..+|++++|+|+++... |+......+.+.... ..++| ++|+|
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~~v~-----------~iIvv 161 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TAGVK-----------HLIVL 161 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-HcCCC-----------eEEEE
Confidence 3467899999999999888889999999999999998643 221111111111111 11233 24599
Q ss_pred ccccccccc------hhhhhhHHHHHhhhc------CCeEEEeccCCCcCHHHHHH
Q psy16673 299 YSTTCLESF------QSVKCYFEEIREQRQ------DFQLLECSAKDNYNIKEVFR 342 (373)
Q Consensus 299 gnK~Dl~~~------r~v~~~~~~~~a~~~------~~~~~E~SAktg~nv~elf~ 342 (373)
+||+|+... .....++...+.... +++|+++||++|.|++++++
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999998431 111122233333333 46899999999999999655
No 389
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.48 E-value=0.0046 Score=63.87 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=53.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|+..|......+++.+|++++|+|+++..+.+....|... . ..++|++ +|+||+
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~----~~~ip~i------------lviNKi 144 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-N----KYKVPRI------------AFVNKM 144 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-H----HcCCCEE------------EEEeCC
Confidence 3467999999999999889999999999999999998877766555432 2 1245554 999999
Q ss_pred ccccc
Q psy16673 303 CLESF 307 (373)
Q Consensus 303 Dl~~~ 307 (373)
|+...
T Consensus 145 D~~~~ 149 (704)
T 2rdo_7 145 DRMGA 149 (704)
T ss_pred Ccccc
Confidence 98654
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.47 E-value=0.0025 Score=57.48 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=45.7
Q ss_pred ccceeeeccCCCCCch------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|+..+.. +...++ ..++++++|+|+++..+.. .|..++.+. ++|++
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~----~~pvi---------- 114 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILEM----EKKVI---------- 114 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHTT----TCCEE----------
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHhc----CCCEE----------
Confidence 4578999999988864 345555 5889999999999865432 355555442 45655
Q ss_pred eeeecccccc
Q psy16673 295 FLLVYSTTCL 304 (373)
Q Consensus 295 ~ilvgnK~Dl 304 (373)
+|+||+|+
T Consensus 115 --lv~NK~Dl 122 (258)
T 3a1s_A 115 --LAMTAIDE 122 (258)
T ss_dssp --EEEECHHH
T ss_pred --EEEECcCC
Confidence 99999995
No 391
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.41 E-value=0.0019 Score=58.96 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=62.5
Q ss_pred cccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhcc---CCCccEEEeccc-ccccccccccccccc
Q psy16673 150 TCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQEIPIVVAGNK-SDMTSHHRAVHLEDV 225 (373)
Q Consensus 150 ~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~---~~~~pi~ivgnK-~Dl~~~~r~~~~~~~ 225 (373)
.+||+.++.++..||.++|++|+|.|.+|.+-++ ...-+.++.....+ ...+|+.|.+|| .|+.+. .+..
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~-- 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCF-- 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHH--
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHH--
Confidence 4789999999999999999999999999987544 22222222121111 257899999997 477641 1111
Q ss_pred eeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHH
Q psy16673 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFE 270 (373)
Q Consensus 226 ~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~ 270 (373)
++.+..+.. .+. -+-.|...++..++...+.-.|.-
T Consensus 268 EI~e~L~L~--------~l~-r~W~Iq~csA~tGeGL~EGldWL~ 303 (312)
T 3l2o_B 268 YLAHELHLN--------LLN-HPWLVQDTEAETLTGFLNGIEWIL 303 (312)
T ss_dssp HHHHHTTGG--------GGC-SCEEEEEEETTTCTTHHHHHHHHH
T ss_pred HHHHHcCCc--------cCC-CcEEEEecccCCCcCHHHHHHHHH
Confidence 111111111 111 234566667777777777766654
No 392
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.24 E-value=0.003 Score=53.28 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=77.5
Q ss_pred ceeeeccC----------CCCCchhhhhccccc---cEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 225 VDILDTCG----------DLQFPAMRRLSIATA---HAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 225 ~~~~dtag----------~~~~~~~~~~s~~~a---~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
+.++||+| ++.|..+.+.+++.+ +++++|+|+++..+..... +.+.+... ++|++
T Consensus 70 ~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~~----~~p~i------- 137 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMKSL----NIPFT------- 137 (195)
T ss_dssp EEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHHT----TCCEE-------
T ss_pred EEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHHHc----CCCEE-------
Confidence 34788888 556777777777766 8899999998876554332 22222222 35544
Q ss_pred cceeeeecccccccc--chhhhhhHHHHHhhh-cCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 292 AHAFLLVYSTTCLES--FQSVKCYFEEIREQR-QDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~--~r~v~~~~~~~~a~~-~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+.. .+.+..++.+.++.. .+++|++|||++|.||+++|+.+.+.+
T Consensus 138 -----~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 138 -----IVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp -----EEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----EEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 9999999854 455566666666666 458999999999999999999999864
No 393
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.19 E-value=0.0057 Score=65.80 Aligned_cols=110 Identities=13% Similarity=-0.009 Sum_probs=80.7
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|......++..+|++++|+|++++...+.... ...+... ++|. +|+++||+
T Consensus 359 ~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEh-L~ll~~l----gIP~-----------IIVVINKi 422 (1289)
T 3avx_A 359 RHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLGRQV----GVPY-----------IIVFLNKC 422 (1289)
T ss_dssp CEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHH-HHHHHHH----TCSC-----------EEEEEECC
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHH-HHHHHHc----CCCe-----------EEEEEeec
Confidence 457899999999998888889999999999999999876554433 3333321 3451 34899999
Q ss_pred ccccchh---hhhhHHHHHhhhcC-----CeEEEeccCCC--------cCHHHHHHHHHHHh
Q psy16673 303 CLESFQS---VKCYFEEIREQRQD-----FQLLECSAKDN--------YNIKEVFRTFLTLS 348 (373)
Q Consensus 303 Dl~~~r~---v~~~~~~~~a~~~~-----~~~~E~SAktg--------~nv~elf~~i~~~~ 348 (373)
|+.+... ...++.+.+....+ ++|+++||++| .||+++|+.+.+..
T Consensus 423 DLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 423 DMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 9975322 12334455555554 68999999999 57999999998743
No 394
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.16 E-value=0.0098 Score=56.13 Aligned_cols=109 Identities=15% Similarity=0.150 Sum_probs=83.2
Q ss_pred ceeeeccCCCCCch---------hhhhccccccEEEEEEecCCcc--chhhHHHHHHHHHhhccCCCCCchhhccccccc
Q psy16673 225 VDILDTCGDLQFPA---------MRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH 293 (373)
Q Consensus 225 ~~~~dtag~~~~~~---------~~~~s~~~a~~~i~v~dvt~~~--S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~ 293 (373)
+.++||+|...+.. ........++++++|+|+++.. ++++...|...+....+ +.|++
T Consensus 216 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~pii--------- 284 (357)
T 2e87_A 216 YQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFL--------- 284 (357)
T ss_dssp EEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEE---------
T ss_pred EEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEE---------
Confidence 56888988755421 1112344689999999999987 78888888888877543 45655
Q ss_pred eeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhh
Q psy16673 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 294 ~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~ 349 (373)
+|+||+|+...+.+ ++...++...++++++|||++|+||+++|+.+.+.+.
T Consensus 285 ---lV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 285 ---VVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ---EEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ---EEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 99999999876654 3455566677899999999999999999999998763
No 395
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.15 E-value=0.00056 Score=69.28 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=63.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCcc---ch--hhHHHHHHHHHhhccCCCCCchhhccccccceeee
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLE---SF--QSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLL 297 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~---S~--~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~il 297 (373)
..+.++||+|++.|.......+..+|++++|+|++++. ++ ......+-.+... .++| .+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip-----------~iIv 320 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGIS-----------EIVV 320 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCC-----------CEEE
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCC-----------eEEE
Confidence 45779999999999888888899999999999999864 22 1111111111111 1233 2459
Q ss_pred eccccccccch-hhh---hhHHHHHh-hhcC-----CeEEEeccCCCcCHH--------------HHHHHHHH
Q psy16673 298 VYSTTCLESFQ-SVK---CYFEEIRE-QRQD-----FQLLECSAKDNYNIK--------------EVFRTFLT 346 (373)
Q Consensus 298 vgnK~Dl~~~r-~v~---~~~~~~~a-~~~~-----~~~~E~SAktg~nv~--------------elf~~i~~ 346 (373)
|+||+|+.... ... ..+...+. ...| ++|++|||++|.||+ +|++.|.+
T Consensus 321 viNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 321 SVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred EEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 99999986521 111 12222222 3334 489999999999998 68887765
No 396
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.14 E-value=0.0047 Score=61.88 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=52.0
Q ss_pred cceeeeccCCCC-----------CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccc
Q psy16673 224 DVDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATA 292 (373)
Q Consensus 224 ~~~~~dtag~~~-----------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~ 292 (373)
.+.++||+|... |..+...++..+|++++|+|+++....+....+.+.+... ..|
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~----~~p---------- 220 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH----EDK---------- 220 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC----GGG----------
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc----CCC----------
Confidence 467899999765 4456667889999999999999866666666666555332 233
Q ss_pred ceeeeeccccccccchhhh
Q psy16673 293 HAFLLVYSTTCLESFQSVK 311 (373)
Q Consensus 293 ~~~ilvgnK~Dl~~~r~v~ 311 (373)
+++|+||+|+...+.+.
T Consensus 221 --vilVlNK~Dl~~~~el~ 237 (550)
T 2qpt_A 221 --IRVVLNKADMVETQQLM 237 (550)
T ss_dssp --EEEEEECGGGSCHHHHH
T ss_pred --EEEEEECCCccCHHHHH
Confidence 56999999997665543
No 397
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.12 E-value=0.0054 Score=59.35 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=82.3
Q ss_pred cceeeeccCCCCCchh-------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceee
Q psy16673 224 DVDILDTCGDLQFPAM-------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL 296 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~-------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~i 296 (373)
.+.++||+|+..|..+ ...++..++++++|+|++.. .....|..++.+. ++|+ +
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~pi------------I 144 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPF------------V 144 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCE------------E
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCE------------E
Confidence 3569999999888765 34478899999999999322 3334566666654 4554 4
Q ss_pred eeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHh
Q psy16673 297 LVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLS 348 (373)
Q Consensus 297 lvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~ 348 (373)
+|+||+|+...+.. +..+.+++.++++|++|||++|.|++++|+.+.+.+
T Consensus 145 vV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 145 VVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp EECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred EEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999777654 667788888899999999999999999999999965
No 398
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.11 E-value=0.072 Score=45.29 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred eeeeccccccchhHhHHhhhhhcCeEEEEEeCCChhhHHHHHHHHHHHHHHhccCCCccEEEeccccccc
Q psy16673 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMT 214 (373)
Q Consensus 145 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~l~~~~~~i~~~~~~~~~~pi~ivgnK~Dl~ 214 (373)
+.++|+++.. .......+..+|.++++...... + ..+..+++.+.......+.+++.+|.|+.|..
T Consensus 78 ~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 78 FAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp EEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred EEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 8899998865 33445556779999998877554 3 66777777776654323567778999999854
No 399
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.04 E-value=0.0071 Score=53.98 Aligned_cols=114 Identities=14% Similarity=0.032 Sum_probs=73.2
Q ss_pred ccceeeeccCC--------CCCchhhh----hccccccEEEEEEecCCccchhhHH-HHHHHHHhhccCCCCCchhhccc
Q psy16673 223 EDVDILDTCGD--------LQFPAMRR----LSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMRRLSI 289 (373)
Q Consensus 223 ~~~~~~dtag~--------~~~~~~~~----~s~~~a~~~i~v~dvt~~~S~~~v~-~~~~~i~~~~~~~~~p~v~~~~~ 289 (373)
..+.++||+|. +.+..... .+.+++|++++|+|+++ +.... .+.+.+.+..+..
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~---------- 136 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR---FTAQDQQAVRQVRDMFGED---------- 136 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB---CCHHHHHHHHHHHHHHCGG----------
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC---CCHHHHHHHHHHHHHhChh----------
Confidence 45779999997 33322222 23489999999999985 32222 2445555443221
Q ss_pred cccceeeeeccccccccchh---hh---hhHHHHHhhhcCCeEEEeccCC-----CcCHHHHHHHHHHHhh
Q psy16673 290 ATAHAFLLVYSTTCLESFQS---VK---CYFEEIREQRQDFQLLECSAKD-----NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 290 ~~~~~~ilvgnK~Dl~~~r~---v~---~~~~~~~a~~~~~~~~E~SAkt-----g~nv~elf~~i~~~~~ 349 (373)
..+.++++++||.|+..... +. .+..+.+.+..|..|+.++++. +.||++||+.|.+++.
T Consensus 137 ~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 137 VLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 01334569999999965421 11 1345677777888887777665 6899999999998764
No 400
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.96 E-value=0.004 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+++|+|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988843
No 401
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.91 E-value=0.006 Score=52.30 Aligned_cols=31 Identities=23% Similarity=0.545 Sum_probs=25.4
Q ss_pred CCCCcCCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 1 ~~~~~~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|..+......|+|.|.+|+||||+.+++.
T Consensus 6 ~~~~~~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 6 SQPAFSPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp --CCSCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3566666667789999999999999999987
No 402
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.89 E-value=0.0036 Score=61.36 Aligned_cols=106 Identities=22% Similarity=0.204 Sum_probs=69.4
Q ss_pred ccceeeeccCCCCCchh--------hhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccce
Q psy16673 223 EDVDILDTCGDLQFPAM--------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA 294 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~--------~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~ 294 (373)
..+.++||+|...+... ...++..+|++++|+|++++.++.. ..|.+.+.. .|
T Consensus 272 ~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~~------~p------------ 332 (462)
T 3geh_A 272 IPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVKH------RP------------ 332 (462)
T ss_dssp EEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHTT------SC------------
T ss_pred EEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhccC------Cc------------
Confidence 34679999998665432 3346889999999999999887765 334444421 35
Q ss_pred eeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 295 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 295 ~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+...+.+. ..+.+. .++++++|||++|.|++++|+.+.+.+...
T Consensus 333 iivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 333 LILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp EEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred EEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 44999999997766544 111111 467899999999999999999999976443
No 403
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.89 E-value=0.0031 Score=53.93 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
|+|+|++|||||||+++++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999983
No 404
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.87 E-value=0.0087 Score=56.74 Aligned_cols=116 Identities=20% Similarity=0.193 Sum_probs=77.4
Q ss_pred ccceeeeccCCCC---------CchhhhhccccccEEEEEEecCCcc--chhhHHHHHHHHHhhccCCCCCchhhccccc
Q psy16673 223 EDVDILDTCGDLQ---------FPAMRRLSIATAHAFLLVYSTTCLE--SFQSVKCYFEEIREQRQDFQFPAMRRLSIAT 291 (373)
Q Consensus 223 ~~~~~~dtag~~~---------~~~~~~~s~~~a~~~i~v~dvt~~~--S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~ 291 (373)
..+.++||+|... |.... ..+..+|.+++|+|++++. .++.+..|.+.+..... .+.|
T Consensus 226 ~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~-~~~p--------- 294 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGV-SGKP--------- 294 (364)
T ss_dssp EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC-CSCC---------
T ss_pred EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc-CCCC---------
Confidence 3467899999632 22222 2578899999999999987 56666666655554322 2345
Q ss_pred cceeeeeccccccccchh-hhhhHHHHHhhhc---CCeEEEeccCCCcCHHHHHHHHHHHhhhhc
Q psy16673 292 AHAFLLVYSTTCLESFQS-VKCYFEEIREQRQ---DFQLLECSAKDNYNIKEVFRTFLTLSQILT 352 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~-v~~~~~~~~a~~~---~~~~~E~SAktg~nv~elf~~i~~~~~~~~ 352 (373)
+++|+||+|+.+... .....++.++... +.++++|||++|.|++++|+.|.+......
T Consensus 295 ---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 295 ---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp ---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 459999999865431 1112333333433 357899999999999999999998654433
No 405
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.86 E-value=0.012 Score=56.64 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=76.8
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccch-hhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESF-QSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYST 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~-~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK 301 (373)
..+.++||+|++.|..........+|++++|+|+++.... +....+ ..+.... + +++++|+||
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~~~~~----~-----------~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MALQIIG----Q-----------KNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHHHHHT----C-----------CCEEEEEEC
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHHHHcC----C-----------CcEEEEEEC
Confidence 3467999999999877777777888999999999976422 222222 1222111 1 135599999
Q ss_pred cccccchh--hhhhHHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 302 TCLESFQS--VKCYFEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 302 ~Dl~~~r~--v~~~~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
+|+..... ...++.+.+... .+++++++||++|.|++++|+.|.+....
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 147 IELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 99976542 222333444332 46899999999999999999999985443
No 406
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0045 Score=52.28 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999984
No 407
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.79 E-value=0.042 Score=51.77 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=49.1
Q ss_pred cccccEEEEEEecCCccc-hhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccccccchhh--hhhHHHHHhh
Q psy16673 244 IATAHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSV--KCYFEEIREQ 320 (373)
Q Consensus 244 ~~~a~~~i~v~dvt~~~S-~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~r~v--~~~~~~~~a~ 320 (373)
..++|.+++|... ++.. ...+..+.-..... +.+.+||.||+||.+.... ..++...+ .
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~----------------~~~~iivlNK~DL~~~~~~~~~~~~~~~y-~ 189 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCETL----------------QVEPLIVLNKIDLLDDEGMDFVNEQMDIY-R 189 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH----------------TCEEEEEEECGGGCCHHHHHHHHHHHHHH-H
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc----------------CCCEEEEEECccCCCchhHHHHHHHHHHH-H
Confidence 5677888877654 4433 23333332211111 2334599999999765321 11122222 3
Q ss_pred hcCCeEEEeccCCCcCHHHHHHH
Q psy16673 321 RQDFQLLECSAKDNYNIKEVFRT 343 (373)
Q Consensus 321 ~~~~~~~E~SAktg~nv~elf~~ 343 (373)
..|++.+.+||++|.|++++...
T Consensus 190 ~~G~~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 190 NIGYRVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp TTTCCEEECBTTTTBTHHHHHHH
T ss_pred hCCCcEEEEecCCCcCHHHHHHh
Confidence 56889999999999999988754
No 408
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.77 E-value=0.04 Score=55.85 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.|+|+|++|+|||||++.+++-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 4999999999999999999954
No 409
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.77 E-value=0.011 Score=53.45 Aligned_cols=64 Identities=22% Similarity=0.185 Sum_probs=44.9
Q ss_pred cceeeeccCCCCCch------hhhhcc--ccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccccccee
Q psy16673 224 DVDILDTCGDLQFPA------MRRLSI--ATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAF 295 (373)
Q Consensus 224 ~~~~~dtag~~~~~~------~~~~s~--~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ 295 (373)
.+.++||+|+..+.. +...++ .+++++++|+|+++.. ....|..++.+.. .+|++
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~---~~p~i----------- 113 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME---VKNII----------- 113 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT---CCSEE-----------
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC---CCCEE-----------
Confidence 478999999998876 555555 6899999999999853 2223444444331 15544
Q ss_pred eeeccccccc
Q psy16673 296 LLVYSTTCLE 305 (373)
Q Consensus 296 ilvgnK~Dl~ 305 (373)
+|+||+|+.
T Consensus 114 -lv~NK~Dl~ 122 (271)
T 3k53_A 114 -LVLNKFDLL 122 (271)
T ss_dssp -EEEECHHHH
T ss_pred -EEEEChhcC
Confidence 999999963
No 410
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.68 E-value=0.007 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHHh
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.--|+|+|++|||||||+++++.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999999984
No 411
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.67 E-value=0.0064 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.6
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..+...|+|+|++|+|||||++.+.
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3445579999999999999999987
No 412
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.63 E-value=0.0097 Score=54.21 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=75.7
Q ss_pred ccceeeeccCCC-------------CCchhhhhccccccEEE-EEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcc
Q psy16673 223 EDVDILDTCGDL-------------QFPAMRRLSIATAHAFL-LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLS 288 (373)
Q Consensus 223 ~~~~~~dtag~~-------------~~~~~~~~s~~~a~~~i-~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~ 288 (373)
..+.++||+|.. .+..+...+++.+++++ +|+|+++..+.++...+.+.+.. .+.|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~------ 194 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQR------ 194 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSS------
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCe------
Confidence 457899999964 34456667888888776 68999987766655445544432 2345
Q ss_pred ccccceeeeeccccccccchhhhhhHHHH--HhhhcC-CeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKCYFEEI--REQRQD-FQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~--~a~~~~-~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
+++|+||+|+...+....+..+. .....+ +++++|||++|.|++++|+.+.+...-.
T Consensus 195 ------~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~ 254 (299)
T 2aka_B 195 ------TIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 254 (299)
T ss_dssp ------EEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred ------EEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence 45999999997654422222111 111123 4789999999999999999998754333
No 413
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0061 Score=52.43 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999884
No 414
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.58 E-value=0.0081 Score=61.93 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=76.8
Q ss_pred cceeeeccCCCC---CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc
Q psy16673 224 DVDILDTCGDLQ---FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS 300 (373)
Q Consensus 224 ~~~~~dtag~~~---~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn 300 (373)
.+.++||+|... .......+++.+|++++|+|++++.+..+...|.+.+.. .+.| +++|+|
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~------------iiiVlN 238 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLT------------VFFLVN 238 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCC------------EEEEEE
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCC------------EEEEEE
Confidence 477999999654 345566788999999999999999888877666544432 1334 459999
Q ss_pred ccccccchhhhh---------------hHHHHHhhh--------cCCeEEEeccC--------------CCcCHHHHHHH
Q psy16673 301 TTCLESFQSVKC---------------YFEEIREQR--------QDFQLLECSAK--------------DNYNIKEVFRT 343 (373)
Q Consensus 301 K~Dl~~~r~v~~---------------~~~~~~a~~--------~~~~~~E~SAk--------------tg~nv~elf~~ 343 (373)
|+|+...+.++. .....+... .+.++++|||+ +|.|++++++.
T Consensus 239 K~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~ 318 (695)
T 2j69_A 239 AWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDS 318 (695)
T ss_dssp CGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHH
T ss_pred CcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHH
Confidence 999865542111 111223222 23579999999 99999999999
Q ss_pred HHHHh
Q psy16673 344 FLTLS 348 (373)
Q Consensus 344 i~~~~ 348 (373)
+.+.+
T Consensus 319 L~~~l 323 (695)
T 2j69_A 319 LNTFL 323 (695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 415
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.54 E-value=0.0078 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++...|+|+|++|+|||||++.+.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34556799999999999999998873
No 416
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.0062 Score=53.82 Aligned_cols=112 Identities=12% Similarity=0.008 Sum_probs=72.1
Q ss_pred cceeeeccCCCC-----------CchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccC-CCCCchhhccccc
Q psy16673 224 DVDILDTCGDLQ-----------FPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQFPAMRRLSIAT 291 (373)
Q Consensus 224 ~~~~~dtag~~~-----------~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~-~~~p~v~~~~~~~ 291 (373)
.+.++||+|... +......++++++++++|+|+++... . ...+...+.+..+. ...|
T Consensus 79 ~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-~-~~~~l~~~~~~~~~~~~~~--------- 147 (239)
T 3lxx_A 79 ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE-E-EHKATEKILKMFGERARSF--------- 147 (239)
T ss_dssp EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS-H-HHHHHHHHHHHHHHHHGGG---------
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH-H-HHHHHHHHHHHhhhhccce---------
Confidence 456999999543 33344556778899999999985433 2 22344444432221 1123
Q ss_pred cceeeeeccccccccchhhh------hhHHHHHhhhcCCeEEEeccCCC-----cCHHHHHHHHHHHhh
Q psy16673 292 AHAFLLVYSTTCLESFQSVK------CYFEEIREQRQDFQLLECSAKDN-----YNIKEVFRTFLTLSQ 349 (373)
Q Consensus 292 ~~~~ilvgnK~Dl~~~r~v~------~~~~~~~a~~~~~~~~E~SAktg-----~nv~elf~~i~~~~~ 349 (373)
+++|+||+|+...+.+. .+..+.+.+..+..|+.++++.+ .+|.++|+.+.+++.
T Consensus 148 ---~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 148 ---MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp ---EEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 55999999987665544 34567788888888888887754 789999999988653
No 417
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.39 E-value=0.19 Score=48.47 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.--|+++|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468899999999999998887
No 418
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.32 E-value=0.0092 Score=56.31 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.++|+|++|||||||+|.+++.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 6899999999999999999943
No 419
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.28 E-value=0.0091 Score=50.62 Aligned_cols=20 Identities=45% Similarity=0.763 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
++|+|++|+|||||++.+++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999984
No 420
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.23 E-value=0.0098 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-|+|+|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999843
No 421
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=95.22 E-value=0.0087 Score=58.94 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=80.0
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|.......+..+|++++|+|+++...-+....+. .+.. .++|++ +|+||+
T Consensus 73 ~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~-~~~~----~~ip~I------------vviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML-ILDH----FNIPII------------VVITKS 135 (482)
T ss_dssp EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCBC------------EEEECT
T ss_pred EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH-HHHH----cCCCEE------------EEEECC
Confidence 45789999999999888888899999999999999854333322221 2221 235555 999999
Q ss_pred ccccch--hhhhhHHHHHhhhc----CCeEEEeccCCCcCHHHHHHHHHHHhhhh
Q psy16673 303 CLESFQ--SVKCYFEEIREQRQ----DFQLLECSAKDNYNIKEVFRTFLTLSQIL 351 (373)
Q Consensus 303 Dl~~~r--~v~~~~~~~~a~~~----~~~~~E~SAktg~nv~elf~~i~~~~~~~ 351 (373)
|+.+.. ....++.+.+.... +++++++||++|.|++++|+.|.+.+...
T Consensus 136 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 136 DNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred CcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence 986532 22223333433333 67999999999999999999999976544
No 422
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.16 E-value=0.011 Score=51.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-++|+|++|+|||||++.+++.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999998843
No 423
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.14 E-value=0.29 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+...|+++|.+||||||++..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999887
No 424
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.13 E-value=0.014 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+...|+|+|++|+|||||++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999887
No 425
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.11 E-value=0.0098 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
-++++|++|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999865
No 426
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.013 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
...|+|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999998844
No 427
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.10 E-value=0.014 Score=50.53 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.-|+|+|++|+|||||++.++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999843
No 428
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.04 E-value=0.012 Score=51.44 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|++|+|||||++.+++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999984
No 429
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.03 E-value=0.019 Score=55.25 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=71.4
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecccc
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTT 302 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~ 302 (373)
..+.++||+|++.|..........+|++++|+|++++............+... ++ +++++|+||+
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l----~~-----------~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL----GI-----------DKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT----TC-----------CCEEEEEECT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc----CC-----------CeEEEEEEcc
Confidence 34679999999998777777778889999999999764222222211122211 11 1356999999
Q ss_pred ccccchh--hhhhHHHHHhhh---cCCeEEEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 303 CLESFQS--VKCYFEEIREQR---QDFQLLECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 303 Dl~~~r~--v~~~~~~~~a~~---~~~~~~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
|+..... ...++.+.+... .++++++|||++|.|++++|+.|.+.+..
T Consensus 146 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 146 DLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 9966543 223344444443 36899999999999999999999985543
No 430
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.02 E-value=0.016 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 10 RIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
.-.|+|+|++|+|||||++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346999999999999999999843
No 431
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.02 E-value=0.012 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999874
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.01 E-value=0.014 Score=50.27 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=21.2
Q ss_pred cCCCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 5 MCDNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 5 ~~~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
|+-++...|+|.|.+|+||||+.+.+.
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHH
Confidence 433445679999999999999999987
No 433
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.98 E-value=0.0047 Score=57.14 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.++|+|++|||||||+|.++.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHhcc
Confidence 3799999999999999999983
No 434
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.96 E-value=0.017 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
......|+|+|.+|+||||+.+.+..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998873
No 435
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=94.91 E-value=0.025 Score=54.90 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHhc
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
+.+..-|+|+|++++|||+|+|++++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 344566999999999999999999853
No 436
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.90 E-value=0.014 Score=50.28 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.-|+|+|++|+|||||++++..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999974
No 437
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.86 E-value=0.029 Score=52.88 Aligned_cols=107 Identities=13% Similarity=0.057 Sum_probs=77.9
Q ss_pred cceeeeccCCCCC-------------chhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhcccc
Q psy16673 224 DVDILDTCGDLQF-------------PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290 (373)
Q Consensus 224 ~~~~~dtag~~~~-------------~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~ 290 (373)
.+.++||+|..++ ..+...++..++++++++|.++..... ..|...+....+ .+.|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~-~~~~-------- 205 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDP-SGDR-------- 205 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCT-TCTT--------
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcc-cCCC--------
Confidence 5789999999887 556778899999999999877644332 223333333222 2334
Q ss_pred ccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCCCcCHHHHHHHHH
Q psy16673 291 TAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFL 345 (373)
Q Consensus 291 ~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nv~elf~~i~ 345 (373)
+++|+||+|+...+....+..+.++...+.+|+++|++++.++++.+..+.
T Consensus 206 ----~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 206 ----TFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp ----EEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred ----EEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 559999999987766665666667777889999999999999998766543
No 438
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.86 E-value=0.02 Score=48.15 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|.|.+|+||||+.+.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 439
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.79 E-value=0.016 Score=51.29 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
No 440
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.79 E-value=0.018 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHH
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
......|+|+|.+|+||||+.+.+.
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999999999987
No 441
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.74 E-value=0.017 Score=47.66 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|+|.+|+||||+.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999987
No 442
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.71 E-value=0.019 Score=49.93 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998873
No 443
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.71 E-value=0.024 Score=52.00 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=68.4
Q ss_pred ccceeeeccCCCC-------------CchhhhhccccccEEEEEEecCCcc-chhhHHHHHHHHHhhccCCCCCchhhcc
Q psy16673 223 EDVDILDTCGDLQ-------------FPAMRRLSIATAHAFLLVYSTTCLE-SFQSVKCYFEEIREQRQDFQFPAMRRLS 288 (373)
Q Consensus 223 ~~~~~~dtag~~~-------------~~~~~~~s~~~a~~~i~v~dvt~~~-S~~~v~~~~~~i~~~~~~~~~p~v~~~~ 288 (373)
..+.++||+|... +..+...++..+|++++|+|.++.. ...+...+.+.+. ..+.|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~----- 201 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRT----- 201 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSE-----
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcE-----
Confidence 4578999999864 3445667889999999999985433 2222223333332 223454
Q ss_pred ccccceeeeeccccccccchhhhhhHHHHHhhhcCCeEEEeccCC------CcCHHHHHHHHHHHhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD------NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAkt------g~nv~elf~~i~~~~~ 349 (373)
++|+||+|+...+....+..+.....++.+|+++|+++ |.|+.++++.+.+...
T Consensus 202 -------i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 202 -------IGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp -------EEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred -------EEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 49999999876543211221111112336677777765 6888999999887553
No 444
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.69 E-value=0.017 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.|+|+|.+|+|||||++.+..
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998873
No 445
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.69 E-value=0.024 Score=47.14 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|+|.+|+||||+++.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999887
No 446
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.67 E-value=0.018 Score=47.51 Aligned_cols=19 Identities=37% Similarity=0.450 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRF 30 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~ 30 (373)
-|+|+|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999998
No 447
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.65 E-value=0.018 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|.|.+|+||||+.++|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999997
No 448
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.62 E-value=0.023 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.2
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
....+.|+|+|.+|+||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44466899999999999999999873
No 449
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.61 E-value=0.018 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..|+|+|.+|+|||||++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 450
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.60 E-value=0.019 Score=49.71 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
++|+|+|.+|+||||+..++.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999997
No 451
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.58 E-value=0.022 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
..|+|.|.+|+||||+.+++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3599999999999999999984
No 452
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.53 E-value=0.02 Score=50.25 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999887
No 453
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.51 E-value=0.02 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999988
No 454
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.51 E-value=0.021 Score=47.94 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+++|.+|+||||+...+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 455
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.50 E-value=0.023 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|.|.+|+||||+.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 456
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.49 E-value=0.02 Score=48.42 Aligned_cols=21 Identities=43% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999973
No 457
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.48 E-value=0.028 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+...|+++|.+|+||||+++.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35679999999999999999887
No 458
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.46 E-value=0.024 Score=50.38 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|+.|+|||||++.+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999883
No 459
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.43 E-value=0.022 Score=47.97 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|.|.+|+||||+..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999887
No 460
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.42 E-value=0.02 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+++|+|++|+|||||++.+++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 589999999999999998874
No 461
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.41 E-value=0.025 Score=50.10 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 462
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.40 E-value=0.024 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999999988
No 463
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.40 E-value=0.022 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHhcc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFNT 34 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~~ 34 (373)
-.++++|+.|+|||||++.+++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999998543
No 464
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.37 E-value=0.023 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
+|+|+|.+|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999984
No 465
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.37 E-value=0.029 Score=46.68 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-|+|.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999883
No 466
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.35 E-value=0.026 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 467
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.32 E-value=0.024 Score=51.01 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 34 ~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999888
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.29 E-value=0.024 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|.+|+|||||+++++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 469
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.28 E-value=0.029 Score=49.77 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=21.3
Q ss_pred CceEEEEEcCCCCChHHHHHHHH
Q psy16673 9 ERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 9 ~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
+.++|+|.|.+|+||||+..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999999997
No 470
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.26 E-value=0.027 Score=47.35 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|.|.+|+||||+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999987
No 471
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.26 E-value=0.025 Score=51.31 Aligned_cols=20 Identities=50% Similarity=0.846 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999888
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.26 E-value=0.027 Score=50.11 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999988
No 473
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.25 E-value=0.026 Score=48.03 Aligned_cols=20 Identities=35% Similarity=0.577 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.|+|+|.+|+||||+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 69999999999999999887
No 474
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.19 E-value=0.022 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.++++|++|+|||+|++.+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998874
No 475
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.18 E-value=0.03 Score=49.30 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 476
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.17 E-value=0.18 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHh
Q psy16673 13 LVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 13 I~ivG~~~VGKSsL~~r~~~ 32 (373)
++|.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998873
No 477
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.17 E-value=0.038 Score=47.40 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCceEEEEEcCCCCChHHHHHHHHh
Q psy16673 7 DNERIRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 7 ~~~~~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-.+...|+|+|.+|+|||||++.+..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999883
No 478
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.17 E-value=0.027 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 58999999999999999888
No 479
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.15 E-value=0.051 Score=55.69 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=50.4
Q ss_pred cceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeeccccc
Q psy16673 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC 303 (373)
Q Consensus 224 ~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgnK~D 303 (373)
.+.++||+|+..|......+++.++++++++|+++....+... +...+.. .++|++ +|+||.|
T Consensus 75 ~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~-~~~~~~~----~~ip~i------------lv~NKiD 137 (665)
T 2dy1_A 75 RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTER-AWTVAER----LGLPRM------------VVVTKLD 137 (665)
T ss_dssp EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHH----TTCCEE------------EEEECGG
T ss_pred EEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHH-HHHHHHH----ccCCEE------------EEecCCc
Confidence 4569999999999988889999999999999999887765543 3333332 245554 9999999
Q ss_pred cc
Q psy16673 304 LE 305 (373)
Q Consensus 304 l~ 305 (373)
+.
T Consensus 138 ~~ 139 (665)
T 2dy1_A 138 KG 139 (665)
T ss_dssp GC
T ss_pred hh
Confidence 86
No 480
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.14 E-value=0.028 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=20.8
Q ss_pred CCceEEEEEcCCCCChHHHHHHHH
Q psy16673 8 NERIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 8 ~~~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+..-|+|+|.+|+|||||++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345579999999999999999887
No 481
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.14 E-value=0.027 Score=48.77 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++|+|+|+||+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999883
No 482
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.14 E-value=0.029 Score=47.91 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|+|.+|+||||+...+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 483
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.13 E-value=0.032 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHH
Q psy16673 11 IRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~ 31 (373)
..|+|+|.+|+||||+.+.+.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 484
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.13 E-value=0.026 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.814 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
-++|+|++|+|||||++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 489999999999999998873
No 485
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.11 E-value=0.028 Score=49.84 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999888
No 486
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.11 E-value=0.03 Score=50.07 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
No 487
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.11 E-value=0.03 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
.+.|+|+|.+|+||||+.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 488
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.10 E-value=0.028 Score=50.40 Aligned_cols=20 Identities=30% Similarity=0.537 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999988
No 489
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=94.08 E-value=0.072 Score=50.45 Aligned_cols=109 Identities=5% Similarity=-0.002 Sum_probs=78.6
Q ss_pred ccceeeeccCCCCCchhhhhccccccEEEEEEecCCccchhhHHHHHHHHHhhccCCCCCchhhccccccceeeeecc-c
Q psy16673 223 EDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYS-T 301 (373)
Q Consensus 223 ~~~~~~dtag~~~~~~~~~~s~~~a~~~i~v~dvt~~~S~~~v~~~~~~i~~~~~~~~~p~v~~~~~~~~~~~ilvgn-K 301 (373)
..+.++||+|++.|.......++.+|++++|+| +. ..+.....+...+... ++|. +++++| |
T Consensus 60 ~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~~----~i~~-----------~ivvvNNK 122 (370)
T 2elf_A 60 RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDLL----GFKH-----------GIIALTRS 122 (370)
T ss_dssp SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHHT----TCCE-----------EEEEECCG
T ss_pred eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHHc----CCCe-----------EEEEEEec
Confidence 347899999999998877788899999999999 44 4455455554444332 2343 257888 9
Q ss_pred cccccchhhhh--hHHHHHhhhc---CCeEEE--eccCC---CcCHHHHHHHHHHHhh
Q psy16673 302 TCLESFQSVKC--YFEEIREQRQ---DFQLLE--CSAKD---NYNIKEVFRTFLTLSQ 349 (373)
Q Consensus 302 ~Dl~~~r~v~~--~~~~~~a~~~---~~~~~E--~SAkt---g~nv~elf~~i~~~~~ 349 (373)
+|+ +.+.+.. ++.+.+.... .+|+++ +||++ |.|++++|+.|.+...
T Consensus 123 ~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 123 DST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp GGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 999 5443332 3444444443 379999 99999 9999999999998654
No 490
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.07 E-value=0.034 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+++|.+|+||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 491
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.05 E-value=0.027 Score=50.83 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.+.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.03 E-value=0.032 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999888
No 493
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.98 E-value=0.049 Score=48.53 Aligned_cols=114 Identities=14% Similarity=0.034 Sum_probs=72.5
Q ss_pred cccceeeeccCCCCCch-----------hhhhccccccEEEEEEecCCccchhhHHH-HHHHHHhhccCC-CCCchhhcc
Q psy16673 222 LEDVDILDTCGDLQFPA-----------MRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDF-QFPAMRRLS 288 (373)
Q Consensus 222 ~~~~~~~dtag~~~~~~-----------~~~~s~~~a~~~i~v~dvt~~~S~~~v~~-~~~~i~~~~~~~-~~p~v~~~~ 288 (373)
...+.++||+|+..+.. ....+++++|++++|+|+++ +..... +...+.+..+.. ..|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~------ 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGH------ 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGG------
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhcc------
Confidence 34578999999876532 12337789999999999995 433333 334444432210 122
Q ss_pred ccccceeeeeccccccccchhhhh-------hHHHHHhhhcCCe---E--EEeccCCCcCHHHHHHHHHHHhhh
Q psy16673 289 IATAHAFLLVYSTTCLESFQSVKC-------YFEEIREQRQDFQ---L--LECSAKDNYNIKEVFRTFLTLSQI 350 (373)
Q Consensus 289 ~~~~~~~ilvgnK~Dl~~~r~v~~-------~~~~~~a~~~~~~---~--~E~SAktg~nv~elf~~i~~~~~~ 350 (373)
.++++.||+|+...+ +.. ...+.+....+.. | ++|||++|.|++++|+.+.+.+..
T Consensus 141 -----~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 141 -----TIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp -----EEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----EEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 234666699997542 222 2234455555432 3 899999999999999999987643
No 494
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.96 E-value=0.032 Score=50.07 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHHh
Q psy16673 12 RLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~ 32 (373)
.++|+|+.|+|||||++.+++
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998883
No 495
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.94 E-value=0.035 Score=50.52 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHH
Q psy16673 12 RLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~ 31 (373)
.++|+|+.|+|||||++.++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999888
No 496
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.93 E-value=0.039 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCChHHHHHHHH
Q psy16673 10 RIRLVILGGQGVGKSCILKRFL 31 (373)
Q Consensus 10 ~~kI~ivG~~~VGKSsL~~r~~ 31 (373)
...|+|.|.+|+||||+.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 497
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.89 E-value=0.02 Score=54.12 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred ceeeeccCC-------CCCchhhh-------hccccccEE-----------EEEEecCC-ccchhhHHH-HHHHHHhhcc
Q psy16673 225 VDILDTCGD-------LQFPAMRR-------LSIATAHAF-----------LLVYSTTC-LESFQSVKC-YFEEIREQRQ 277 (373)
Q Consensus 225 ~~~~dtag~-------~~~~~~~~-------~s~~~a~~~-----------i~v~dvt~-~~S~~~v~~-~~~~i~~~~~ 277 (373)
+.++||+|+ +.|..+.. .+++.++++ +++|++++ ..++..+.. |.+.+ .
T Consensus 97 l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~- 172 (361)
T 2qag_A 97 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---H- 172 (361)
T ss_dssp EEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---C-
T ss_pred eEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---c-
Confidence 568899998 67776765 666665554 47888886 777777764 44433 1
Q ss_pred CCCCCchhhccccccceeeeeccccccccc
Q psy16673 278 DFQFPAMRRLSIATAHAFLLVYSTTCLESF 307 (373)
Q Consensus 278 ~~~~p~v~~~~~~~~~~~ilvgnK~Dl~~~ 307 (373)
.++|++ +|+||+|+...
T Consensus 173 -~~~piI------------lV~NK~Dl~~~ 189 (361)
T 2qag_A 173 -NKVNIV------------PVIAKADTLTL 189 (361)
T ss_dssp -S-SCEE------------EEEECCSSSCH
T ss_pred -cCCCEE------------EEEECCCCCCH
Confidence 345655 99999998654
No 498
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.89 E-value=0.031 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHHh
Q psy16673 11 IRLVILGGQGVGKSCILKRFLF 32 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~ 32 (373)
++|+|.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999873
No 499
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.88 E-value=0.029 Score=48.63 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHHhc
Q psy16673 12 RLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 12 kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-++|+|++|+|||||++.++..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 500
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.84 E-value=0.033 Score=46.34 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHHhc
Q psy16673 11 IRLVILGGQGVGKSCILKRFLFN 33 (373)
Q Consensus 11 ~kI~ivG~~~VGKSsL~~r~~~~ 33 (373)
-.++|.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988743
Done!