RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16673
(373 letters)
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 93.7 bits (234), Expect = 4e-23
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + IPI+
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D + R V +
Sbjct: 114 LVGNKCDES-PSREVQSSE 131
Score = 80.2 bits (199), Expect = 3e-18
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 15/120 (12%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
I DT G QFPAM+RLSI+ HAF+LVYS T +S + +K +E+I E + D + +
Sbjct: 54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI- 112
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+LV + + V+ E + ++ +E SAK N+N+KE+F+
Sbjct: 113 ----------MLVGNKCDESPSREVQ--SSEAEALARTWKCAFMETSAKLNHNVKELFQE 160
Score = 69.5 bits (171), Expect = 2e-14
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 26/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
R+ + G GVGKS ++ RF+ T+ + Y TVED Y + + I G+
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICT-LQITDTTGSHQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M H LE++ + + + IPI++ G
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPI-------YEQICEIKGDVESIPIMLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NK D + R V +
Sbjct: 117 NKCDES-PSREVQSSE 131
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 93.1 bits (232), Expect = 1e-22
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + ++IP++
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D R V +
Sbjct: 119 LVGNKCDE--TQREVDTRE 135
Score = 81.9 bits (203), Expect = 2e-18
Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 36/158 (22%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ-FPAM 284
I DT G QFPAM+RLSI+ HAF+LV+S T +S + + ++ I + + + P M
Sbjct: 59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVM 118
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + A A Q KC F +E SAK N
Sbjct: 119 LVGNKCDETQREVDTREAQAV-----------AQEWKCAF------------METSAKMN 155
Query: 335 YNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNKGK 372
YN+KE+F+ LT N N +RS +
Sbjct: 156 YNVKELFQELLT--LETRRNMSLNIDGKRSGKQKRTDR 191
Score = 70.7 bits (174), Expect = 1e-14
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
R+V+ G GVGKS ++ RF+ T+ D Y T+ED Y + + I G+
Sbjct: 10 RVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCT-LQITDTTGSHQ 68
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M H LE++ + ++Q ++IP+++ G
Sbjct: 69 FPAMQRLSISKGHAFILVFSVTSKQSLEELGPI-------YKLIVQIKGSVEDIPVMLVG 121
Query: 115 NKSDMTSHHRAVHLED 130
NK D R V +
Sbjct: 122 NKCDE--TQREVDTRE 135
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 87.5 bits (218), Expect = 8e-21
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G QF +MR L I F+LVYS +SFQ +K ++I ++ +++P++
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVI 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 113 LVGNKVDLE-SEREVSSSE 130
Score = 79.4 bits (197), Expect = 6e-18
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
+ILDT G QF +MR L I F+LVYS +SFQ +K ++I ++ + P
Sbjct: 54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVP--- 110
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNYNIKEVFRT 343
+LV + LES + V E R +++ +E SAK + E+F
Sbjct: 111 ---------VILVGNKVDLESEREVS--SSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159
Score = 67.9 bits (167), Expect = 7e-14
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
++V+LG GVGKS + +F+ T+ ++Y T+ED Y ++ V + + I+ AG +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSV-LEILDTAGTEQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ M + + +D+ R I +++P+++ G
Sbjct: 64 FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM--------RDQIIRVKRYEKVPVILVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 116 NKVDLE-SEREVSSSE 130
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 86.8 bits (216), Expect = 2e-20
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++DT G ++ + + ++LVYS T ++SF+ +K ++ + +IPI+
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV-GKVQIPIM 115
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R + E+
Sbjct: 116 LVGNKKDLH-MERVISYEE 133
Score = 79.9 bits (198), Expect = 5e-18
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
++DT G ++ + + ++LVYS T ++SF+ +K ++ + Q P M
Sbjct: 57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R +S A +S F LE SAK+N
Sbjct: 117 VGNKKDLHMERVISYEEGKAL-----------AESWNAAF------------LESSAKEN 153
Query: 335 YNIKEVFRT 343
+VFR
Sbjct: 154 QTAVDVFRR 162
Score = 66.0 bits (162), Expect = 4e-13
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 27/143 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M ++ ++ ILG + VGKS + +F+ + D Y T+E+ +++ V + +V
Sbjct: 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYH-LQLV 59
Query: 65 -VAGNK--SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE 107
AG S + ++ E + + +
Sbjct: 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI--------HGKLLDMVGKVQ 111
Query: 108 IPIVVAGNKSDMTSHHRAVHLED 130
IPI++ GNK D+ R + E+
Sbjct: 112 IPIMLVGNKKDLH-MERVISYEE 133
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 85.6 bits (213), Expect = 3e-20
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G QF AMR L + F LVYS T +F ++ E+I + D +++P++
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-DTEDVPMI 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V E
Sbjct: 113 LVGNKCDLE-DERVVGKEQ 130
Score = 78.3 bits (194), Expect = 1e-17
Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 33/129 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
+ILDT G QF AMR L + F LVYS T +F ++ E+I + P +
Sbjct: 54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + + Q C F LE SAK
Sbjct: 114 VGNKCDLEDERVVGKEQGQNL----------ARQWCNCAF------------LESSAKSK 151
Query: 335 YNIKEVFRT 343
N+ E+F
Sbjct: 152 INVNEIFYD 160
Score = 65.2 bits (160), Expect = 6e-13
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV+LG GVGKS + +F+ + ++Y T+ED Y + V + I+ AG +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCM-LEILDTAGTEQ 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ M + + D+ + R I +++P+++ G
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL--------REQILRVKDTEDVPMILVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V E
Sbjct: 116 NKCDLE-DERVVGKEQ 130
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 85.7 bits (213), Expect = 7e-20
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E +P+V
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH-GKTRVPVV 133
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ S R V +
Sbjct: 134 LVGNKADL-SPEREVQAVE 151
Score = 77.6 bits (192), Expect = 5e-17
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 36/148 (24%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
++DT G ++ + I H ++LVYS T L SFQ ++ ++++ E + P +
Sbjct: 75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVL 134
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R + +S F +E SA++N
Sbjct: 135 VGNKADLSPEREVQAVEGKKL-----------AESWGATF------------MESSAREN 171
Query: 335 YNIKEVFRTFLTLSQILTTNGDENSLKR 362
+ +F + +I +R
Sbjct: 172 QLTQGIFTKVIQ--EIARVENSYGQERR 197
Score = 64.9 bits (159), Expect = 2e-12
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 27/143 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M ++VILG + VGK+ + +F+ +S+ Y TVE+ YS+ +G + +V
Sbjct: 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFH-LHLV 77
Query: 65 -VAGNK--SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE 107
AG S + VH + + +
Sbjct: 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL--------YQKLHEGHGKTR 129
Query: 108 IPIVVAGNKSDMTSHHRAVHLED 130
+P+V+ GNK+D+ S R V +
Sbjct: 130 VPVVLVGNKADL-SPEREVQAVE 151
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 84.9 bits (211), Expect = 1e-19
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G +F AMR + H FLLV++ +SF V F +I + + P+V
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-DDFPVV 118
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ R V +
Sbjct: 119 LVGNKADLE-SQRQVPRSE 136
Score = 78.0 bits (193), Expect = 3e-17
Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G +F AMR + H FLLV++ +SF V F +I + FP +
Sbjct: 60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++ + A AF S + E SAK
Sbjct: 120 VGNKADLESQRQVPRSEASAF-----------GASHHVAY------------FEASAKLR 156
Query: 335 YNIKEVFRT 343
N+ E F
Sbjct: 157 LNVDEAFEQ 165
Score = 64.9 bits (159), Expect = 1e-12
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++GG GVGKS + +F+ + + Y T+ED Y++ V + + + I+ AG +
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPAR-LDILDTAGQEE 69
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
M + RA H +V + I D+ P+V+ G
Sbjct: 70 FGAMREQYMRAGHGFLLVFAINDRQSFNEVGKL--------FTQILRVKDRDDFPVVLVG 121
Query: 115 NKSDMTSHHRAVHLED 130
NK+D+ R V +
Sbjct: 122 NKADLE-SQRQVPRSE 136
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 84.5 bits (210), Expect = 1e-19
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + + P+
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPM 126
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ NK D+ H R V +
Sbjct: 127 ILVANKVDLM-HLRKVTRDQ 145
Score = 73.0 bits (180), Expect = 2e-15
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 35/131 (26%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+D+LDT G +F AMR + T FL+VYS T SF+ V + + I + FP +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI 127
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R+++ + +E SAKD
Sbjct: 128 LVANKVDLMHLRKVTRDQGKEM-----------ATKYNIPY------------IETSAKD 164
Query: 334 N-YNIKEVFRT 343
N+ + F
Sbjct: 165 PPLNVDKTFHD 175
Score = 65.3 bits (160), Expect = 9e-13
Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + +F + D Y T+ED Y + + + ++ AG +
Sbjct: 20 KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEE 78
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R E V + +I + P+++
Sbjct: 79 FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRF--------HQLILRVKDRESFPMILVA 130
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ H R V +
Sbjct: 131 NKVDLM-HLRKVTRDQ 145
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 83.7 bits (208), Expect = 2e-19
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + D + +A A+++VYS T SF+ ++R RQ ++PI
Sbjct: 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-DDVPI 109
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V +++
Sbjct: 110 ILVGNKSDLV-RSREVSVDE 128
Score = 74.8 bits (185), Expect = 2e-16
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 34/130 (26%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ + D + +A A+++VYS T SF+ ++R RQ P +
Sbjct: 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 110
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ A C F +E SA
Sbjct: 111 LVGNKSDLVRSREVSVDEGRAC-----------AVVFDCKF------------IETSAAL 147
Query: 334 NYNIKEVFRT 343
++N++ +F
Sbjct: 148 HHNVQALFEG 157
Score = 62.1 bits (152), Expect = 8e-12
Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
++++LG GVGKS + + F Y R V + + +
Sbjct: 4 KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEAS-LMVYDIWEQDG 61
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ H E SE +LR Q+ D++PI++ G
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL----RVQLRRARQT----DDVPIILVG 113
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +++
Sbjct: 114 NKSDLV-RSREVSVDE 128
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 83.3 bits (207), Expect = 2e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 114 LVGNKSDLE-DKRQVSVEE 131
Score = 76.0 bits (188), Expect = 9e-17
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 34/129 (26%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + +E SAK
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNR-----------ADQWNVNY------------VETSAKTR 151
Query: 335 YNIKEVFRT 343
N+ +VF
Sbjct: 152 ANVDKVFFD 160
Score = 64.0 bits (157), Expect = 1e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 64
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 65 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 117 NKSDLE-DKRQVSVEE 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 83.8 bits (208), Expect = 3e-19
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE-IP 203
+ ++DT R + AHAFL+VYS +SF S Y E + ++ Q IP
Sbjct: 71 LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129
Query: 204 IVVAGNKSDMTSHHRAVHLED 224
++ GNK DM +R V +
Sbjct: 130 ALLLGNKLDMA-QYRQVTKAE 149
Score = 67.2 bits (165), Expect = 2e-13
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 24/136 (17%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAG-- 67
+ L ILG +G GKS + +FL + Y +ED YS + V + + ++ A
Sbjct: 22 VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVH-LRVMDTADLD 80
Query: 68 NKSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + H + S +L EL L + IP ++ G
Sbjct: 81 TPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYL--ELLALH----AKETQRSIPALLLG 134
Query: 115 NKSDMTSHHRAVHLED 130
NK DM +R V +
Sbjct: 135 NKLDMA-QYRQVTKAE 149
Score = 66.8 bits (164), Expect = 2e-13
Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 38/133 (28%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQ--FP 282
+ ++DT R + AHAFL+VYS +SF S Y E + ++ Q P
Sbjct: 71 LRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIP 129
Query: 283 AM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
A+ R+++ A A C F E SA
Sbjct: 130 ALLLGNKLDMAQYRQVTKAEGVAL-----------AGRFGCLF------------FEVSA 166
Query: 332 KDNY-NIKEVFRT 343
++ +++ VF
Sbjct: 167 CLDFEHVQHVFHE 179
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 83.4 bits (207), Expect = 3e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 127
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 128 LVGNKSDLE-DKRQVSVEE 145
Score = 76.4 bits (189), Expect = 9e-17
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 36/144 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 128
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + + +E SAK
Sbjct: 129 VGNKSDLEDKRQVSVEEAKNR-----------AEQWNVNY------------VETSAKTR 165
Query: 335 YNIKEVFRTFLTLSQILTTNGDEN 358
N+ +VF + +I +++
Sbjct: 166 ANVDKVFFDLMR--EIRARKMEDS 187
Score = 64.9 bits (159), Expect = 1e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 78
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 79 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 130
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 131 NKSDLE-DKRQVSVEE 145
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 82.5 bits (205), Expect = 4e-19
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D ++P+V
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK-DSDDVPMV 112
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V
Sbjct: 113 LVGNKSDLA--ARTVESRQ 129
Score = 76.0 bits (188), Expect = 1e-16
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + A +S + +E SAK
Sbjct: 114 VGNKSDLAARTVESRQAQDL-----------ARSYGIPY------------IETSAKTRQ 150
Query: 336 NIKEVFRT 343
+++ F T
Sbjct: 151 GVEDAFYT 158
Score = 62.9 bits (154), Expect = 4e-12
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D T+ED Y + + T + I+ AG +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 63
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R ED+ ++ R I+ D++P+V+ G
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY--------REQIKRVKDSDDVPMVLVG 115
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V
Sbjct: 116 NKSDLA--ARTVESRQ 129
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 82.6 bits (205), Expect = 7e-19
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + D +++P+V
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK-DSEDVPMV 113
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 114 LVGNKCDL--PSRTVDTKQ 130
Score = 75.7 bits (187), Expect = 2e-16
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF+ + Y E+I+ + P +
Sbjct: 55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVL 114
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + A +S F +E SAK
Sbjct: 115 VGNKCDLPSRTVDTKQAQDL-----------ARSYGIPF------------IETSAKTRQ 151
Query: 336 NIKEVFRT 343
+ + F T
Sbjct: 152 GVDDAFYT 159
Score = 63.8 bits (156), Expect = 3e-12
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D Y T+ED Y + + T + I+ AG +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 64
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R ED+ + R I+ +++P+V+ G
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY--------REQIKRVKDSEDVPMVLVG 116
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 117 NKCDL--PSRTVDTKQ 130
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 83.1 bits (206), Expect = 7e-19
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G + A+R + FL V+S T +ESF + + E+I ++D + +P +
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFL 123
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNKSD+ R V +E+
Sbjct: 124 LVGNKSDLE-DKRQVSVEE 141
Score = 76.1 bits (188), Expect = 2e-16
Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 37/161 (22%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G + A+R + FL V+S T +ESF + + E+I ++D P +
Sbjct: 65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 124
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S+ A + + +E SAK
Sbjct: 125 VGNKSDLEDKRQVSVEEAKNR-----------AEQWNVNY------------VETSAKTR 161
Query: 335 YNIKEVFRTFLTL---SQILTTNGDENSLKRRSSAYVNKGK 372
N+ +VF + ++ + KR+S A + +
Sbjct: 162 ANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 63.8 bits (156), Expect = 4e-12
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+++++G GVGKS + +F+++ + + Y T D Y + + ++ I I+ AG +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQ-IDILDTAGQED 74
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
+ + ++ R+ +++ R I + +P ++ G
Sbjct: 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADF--------REQILRVKEDENVPFLLVG 126
Query: 115 NKSDMTSHHRAVHLED 130
NKSD+ R V +E+
Sbjct: 127 NKSDLE-DKRQVSVEE 141
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 81.9 bits (203), Expect = 1e-18
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + D ++P+V
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK-DSDDVPMV 130
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK D+ R V +
Sbjct: 131 LVGNKCDL--PTRTVDTKQ 147
Score = 74.9 bits (185), Expect = 4e-16
Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 33/128 (25%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
DILDT G ++ AMR + T FL V++ +SF + Y E+I+ + P +
Sbjct: 72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVL 131
Query: 285 ---------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNY 335
R + AH +S F +E SAK
Sbjct: 132 VGNKCDLPTRTVDTKQAHEL-----------AKSYGIPF------------IETSAKTRQ 168
Query: 336 NIKEVFRT 343
+++ F T
Sbjct: 169 GVEDAFYT 176
Score = 63.8 bits (156), Expect = 3e-12
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNK- 69
+LV++G GVGKS + + + N + D Y T+ED Y + + T + I+ AG +
Sbjct: 23 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQEE 81
Query: 70 -SDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAG 114
S M + R D++ + R I+ D++P+V+ G
Sbjct: 82 YSAMRDQYMRTGEGFLCVFAINNSKSFADINLY--------REQIKRVKDSDDVPMVLVG 133
Query: 115 NKSDMTSHHRAVHLED 130
NK D+ R V +
Sbjct: 134 NKCDL--PTRTVDTKQ 147
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 81.0 bits (201), Expect = 2e-18
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ D ++ + T AFL+V+S T SF V +R R ++P+
Sbjct: 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPV 112
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V LE+
Sbjct: 113 ILVGNKSDLA-RSREVSLEE 131
Score = 72.9 bits (180), Expect = 1e-15
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 35/130 (26%)
Query: 226 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ D ++ + T AFL+V+S T SF V +R R P +
Sbjct: 54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ ++ C +E SA
Sbjct: 114 LVGNKSDLARSREVSLEEGRHL-----------AGTLSCKH------------IETSAAL 150
Query: 334 NYNIKEVFRT 343
++N +E+F
Sbjct: 151 HHNTRELFEG 160
Score = 64.5 bits (158), Expect = 1e-12
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EIPIVVAGN- 68
+++++G GVGKS + F + ED Y R V + + +
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIV-YDIWEQG 62
Query: 69 --KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ H + V E +++ ++P+++
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET--------LLRLRAGRPHHDLPVIL 114
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V LE+
Sbjct: 115 VGNKSDLA-RSREVSLEE 131
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 81.1 bits (201), Expect = 3e-18
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
+ILDT G + R + F+LVY T SF+ V + E ++ + + ++
Sbjct: 79 EILDTAGQ-EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLI 136
Query: 206 VAGNKSDMTSHHRAVHLED 224
+ GNK+D+ H R V E+
Sbjct: 137 LVGNKADLD-HSRQVSTEE 154
Score = 67.6 bits (166), Expect = 2e-13
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 36/130 (27%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM- 284
+ILDT G + R + F+LVY T SF+ V + E ++ +
Sbjct: 79 EILDTAGQ-EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 137
Query: 285 ----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDN 334
R++S + C F ECSA
Sbjct: 138 VGNKADLDHSRQVSTEEGEKL-----------ATELACAF------------YECSACTG 174
Query: 335 Y-NIKEVFRT 343
NI E+F
Sbjct: 175 EGNITEIFYE 184
Score = 66.1 bits (162), Expect = 5e-13
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 26/142 (18%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV 64
M + ++L I G GVGKS ++ RFL + Y T+E Y + + + I+
Sbjct: 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVS-MEIL 81
Query: 65 -VAGN-KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEI 108
AG + H R E+V + ++ +
Sbjct: 82 DTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPL--------KNILDEIKKPKNV 133
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+++ GNK+D+ H R V E+
Sbjct: 134 TLILVGNKADLD-HSRQVSTEE 154
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 79.5 bits (197), Expect = 6e-18
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 145 VDILDTCGDLQFP--AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEI 202
+ ++DT + + + A+++VYS SF+S ++R Q +
Sbjct: 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA-DHV 112
Query: 203 PIVVAGNKSDMTSHHRAVHLED 224
PI++ GNK+D+ R V +E+
Sbjct: 113 PIILVGNKADLA-RCREVSVEE 133
Score = 72.2 bits (178), Expect = 3e-15
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 36/132 (27%)
Query: 225 VDILDTCGDLQFP--AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+ ++DT + + + A+++VYS SF+S ++R Q P
Sbjct: 54 LVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVP 113
Query: 283 AM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
+ R +S+ A C F +E SA
Sbjct: 114 IILVGNKADLARCREVSVEEGRAC-----------AVVFDCKF------------IETSA 150
Query: 332 KDNYNIKEVFRT 343
+N+ E+F
Sbjct: 151 TLQHNVAELFEG 162
Score = 62.9 bits (154), Expect = 4e-12
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV-VAGNKS 70
R+V+LG GVGK+ + F D + ED+Y R V + +V +
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTT-LVVVDTWEAEK 64
Query: 71 DMTSHHRAVH------------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
S + E SE +LR Q+ D +PI++
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL----RIQLRRTHQA----DHVPIIL 116
Query: 113 AGNKSDMTSHHRAVHLED 130
GNK+D+ R V +E+
Sbjct: 117 VGNKADLA-RCREVSVEE 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 78.9 bits (195), Expect = 2e-17
Identities = 32/155 (20%), Positives = 60/155 (38%), Gaps = 20/155 (12%)
Query: 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277
+ + +D+ + G+ ++ + + A+L+VYS T SF+ ++R RQ
Sbjct: 54 ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 111
Query: 278 DFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL--LECSAKDNY 335
P + LV + + L + V E R F +E SA +
Sbjct: 112 TEDIPII------------LVGNKSDLVRXREVS--VSEGRAXAVVFDXKFIETSAAVQH 157
Query: 336 NIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVNK 370
N+KE+F + Q+ + +RR + K
Sbjct: 158 NVKELFEGIVR--QVRLRRDSKEKNERRLAYQKRK 190
Score = 77.3 bits (191), Expect = 7e-17
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 196
+ L D+ + G+ ++ + + A+L+VYS T SF+ ++R R
Sbjct: 56 ATIILL---DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 110
Query: 197 QDFQEIPIVVAGNKSDMTSHHRAVHLED 224
Q ++IPI++ GNKSD+ R V + +
Sbjct: 111 QT-EDIPIILVGNKSDLV-RXREVSVSE 136
Score = 58.1 bits (141), Expect = 3e-10
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 28/138 (20%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRS--TVEDLYSRDFHVGAVTIKEIPIVV---A 66
R+V++G QGVGKS + F S ED Y R V + I + +
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 67 GNKSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
G + H + E SE +LR Q+ ++IPI++
Sbjct: 68 GENEWLHDHCMQVGDAYLIVYSITDRASFEKASEL----RIQLRRARQT----EDIPIIL 119
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V + +
Sbjct: 120 VGNKSDLV-RXREVSVSE 136
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 78.4 bits (194), Expect = 2e-17
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 146 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ D +R + T AFL+V+S T SF V +R R ++P+
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPV 133
Query: 205 VVAGNKSDMTSHHRAVHLED 224
++ GNKSD+ R V LE+
Sbjct: 134 ILVGNKSDLA-RSREVSLEE 152
Score = 71.1 bits (175), Expect = 1e-14
Identities = 24/130 (18%), Positives = 40/130 (30%), Gaps = 35/130 (26%)
Query: 226 DILDTCGDLQFPA-MRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAM 284
+ D +R + T AFL+V+S T SF V +R R P +
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 134
Query: 285 -----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKD 333
R +S+ ++ C +E SA
Sbjct: 135 LVGNKSDLARSREVSLEEGRHL-----------AGTLSCKH------------IETSAAL 171
Query: 334 NYNIKEVFRT 343
++N +E+F
Sbjct: 172 HHNTRELFEG 181
Score = 63.4 bits (155), Expect = 4e-12
Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 29/138 (21%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPIV-VAGN- 68
+++++G GVGKS + F + ED Y R V + + + +
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT-LVVYDIWEQG 83
Query: 69 --KSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ H + V E +++ ++P+++
Sbjct: 84 DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET--------LLRLRAGRPHHDLPVIL 135
Query: 113 AGNKSDMTSHHRAVHLED 130
GNKSD+ R V LE+
Sbjct: 136 VGNKSDLA-RSREVSLEE 152
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 78.9 bits (195), Expect = 2e-17
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQR 196
+ L D+ + G+ ++ + + A+L+VYS T SF+ ++R R
Sbjct: 87 ATIILL---DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR 141
Query: 197 QDFQEIPIVVAGNKSDMTSHHRAVHLED 224
Q ++IPI++ GNKSD+ R V + +
Sbjct: 142 QT-EDIPIILVGNKSDLV-RCREVSVSE 167
Score = 72.0 bits (177), Expect = 6e-15
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 36/137 (26%)
Query: 218 RAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ 277
+ + +D+ + G+ ++ + + A+L+VYS T SF+ ++R RQ
Sbjct: 85 ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 142
Query: 278 DFQFPAM-----------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326
P + R +S++ A C F
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRAC-----------AVVFDCKF------------ 179
Query: 327 LECSAKDNYNIKEVFRT 343
+E SA +N+KE+F
Sbjct: 180 IETSAAVQHNVKELFEG 196
Score = 60.0 bits (146), Expect = 9e-11
Identities = 35/141 (24%), Positives = 53/141 (37%), Gaps = 34/141 (24%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYS--DRYRSTVEDLYSRDFHVGAVTIKEIPIVV---- 65
R+V++G QGVGKS + F S ED Y R V + I++
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDG---ESATIILLDMW 95
Query: 66 --AGNKSDMTSHH-RAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
G + H + E SE +LR Q+ ++IP
Sbjct: 96 ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASEL----RIQLRRARQT----EDIP 147
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
I++ GNKSD+ R V + +
Sbjct: 148 IILVGNKSDLV-RCREVSVSE 167
Score = 29.2 bits (66), Expect = 1.9
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 34/103 (33%)
Query: 2 KPVMCDNERIRLVIL------------------GGQGVGKSCILKRFLFNTYSDRYRSTV 43
+ +M D E +++L G +L YS R++
Sbjct: 78 RTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA---------YLI-VYSITDRASF 127
Query: 44 EDLYSRDFHVGAVTIK---EIPIVVAGNKSDMTSHHRAVHLED 83
E + + + +IPI++ GNKSD+ R V + +
Sbjct: 128 EKA--SELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSE 167
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 74.9 bits (185), Expect = 3e-16
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIV 205
I D G + A + V+S SFQ+V YF + R + E+P+V
Sbjct: 70 LIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFR-NASEVPMV 123
Query: 206 VAGNKSDMTS-HHRAVHLED 224
+ G + +++ + R +
Sbjct: 124 LVGTQDAISAANPRVIDDSR 143
Score = 66.4 bits (163), Expect = 3e-13
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 20/121 (16%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMR 285
I D G + A + V+S SFQ+V YF + R + P
Sbjct: 70 LIRDEGGPPELQFAA-----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP--- 121
Query: 286 RLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDF---QLLECSAKDNYNIKEVFR 342
+LV + + + R+ D E A N++ VF+
Sbjct: 122 ---------MVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172
Query: 343 T 343
Sbjct: 173 D 173
Score = 58.3 bits (142), Expect = 2e-10
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 35/143 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK-EI-------- 61
+++ I+G GKS ++ R+L TY S + ++ V + I
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRFKKEIVVDGQSYLLLIRDEGGPPE 79
Query: 62 ---------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ V + + V + + S E+P+V+
Sbjct: 80 LQFAAWVDAVVFV----FSLEDEIS---FQTVYNY--------FLRLCSFRNASEVPMVL 124
Query: 113 AGNKSDMTS-HHRAVHLEDVSEW 134
G + +++ + R + +
Sbjct: 125 VGTQDAISAANPRVIDDSRARKL 147
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 71.9 bits (177), Expect = 3e-15
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 146 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE---I 202
I + G A A + V+S SFQ+V ++ R + + +
Sbjct: 57 LIREEAGAPDAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 203 PIVVAGNKSDMTSHHRAVHLED 224
+V ++ + R V
Sbjct: 112 ALVGTQDRISAS-SPRVVGDAR 132
Score = 60.0 bits (146), Expect = 5e-11
Identities = 19/125 (15%), Positives = 30/125 (24%), Gaps = 26/125 (20%)
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQ----DFQF 281
I + G A A + V+S SFQ+V ++ R
Sbjct: 57 LIREEAGAPDAKFSG-----WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111
Query: 282 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE---QRQDFQLLECSAKDNYNIK 338
+ S + V R + E A N+
Sbjct: 112 A------------LVGTQDRISASSPRVVG--DARARALXADMKRCSYYETXATYGLNVD 157
Query: 339 EVFRT 343
VF+
Sbjct: 158 RVFQE 162
Score = 58.4 bits (142), Expect = 2e-10
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 31/142 (21%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK----------- 59
+RL +LG GKS ++ RFL +Y T + Y ++ V T
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 66
Query: 60 -------EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
+ I V + + + VS + +L LR G + +V
Sbjct: 67 AKFSGWADAVIFV----FSLEDENS---FQAVSRL-HGQLSSLR---GEGRGGLALALVG 115
Query: 113 AGNKSDMTSHHRAVHLEDVSEW 134
++ + R V
Sbjct: 116 TQDRISAS-SPRVVGDARARAL 136
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 71.4 bits (175), Expect = 9e-15
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 55/221 (24%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIKEIPI 63
M + V+LG VGKS I+ R +T+ + +T+ + ++ + IK
Sbjct: 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61
Query: 64 VVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHH 123
N + + V + + L +++ I
Sbjct: 62 NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDI------------------------ 97
Query: 124 RAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQ 183
W DT G ++ ++ L A ++V+ + +
Sbjct: 98 ----------W--------------DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLD 133
Query: 184 SVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
K + +++ I++ NK D V + +
Sbjct: 134 RAKTWVNQLKIS----SNYIIILVANKIDKN--KFQVDILE 168
Score = 44.4 bits (105), Expect = 1e-05
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 29/84 (34%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR----------------EQRQ------------- 322
A ++V+ + + K + +++ + Q
Sbjct: 117 ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDN 176
Query: 323 DFQLLECSAKDNYNIKEVFRTFLT 346
+ ++ SAK NIK +F
Sbjct: 177 NLLFIQTSAKTGTNIKNIFYMLAE 200
Score = 28.3 bits (63), Expect = 3.7
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 60 EIPIVVAGNKSDMTSHHRAVHLEDVSEW 87
I++ NK D V + +V ++
Sbjct: 147 NYIIILVANKIDKN--KFQVDILEVQKY 172
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 61.6 bits (150), Expect = 3e-11
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 54/165 (32%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRST--VEDLYSRDFHVGAVTIK-EI-------- 61
+ ++G GVGK+ + R L + Y +T + IK +
Sbjct: 14 ICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWL-----YCELPKLRYVIQSS 102
I+ D+TS + ++++ W+
Sbjct: 74 KAVLKDVYYIGASGAILF----FDVTSR---ITCQNLARWVKEFQAVV------------ 114
Query: 103 SFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDI 147
G+E PIVV NK D+ + + + + V E + Y +I
Sbjct: 115 --GNEAPIVVCANKIDIK-NRQKISKKLVME--VLKGKNYEYFEI 154
Score = 53.5 bits (129), Expect = 2e-08
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVD 226
A +L + T + Q++ + +E + + E PIVV NK D+ + + + + V
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIK-NRQKISKKLVM 141
Query: 227 ILDTCGDLQF 236
+ + ++
Sbjct: 142 EVLKGKNYEY 151
Score = 45.4 bits (108), Expect = 9e-06
Identities = 20/118 (16%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +L + T + Q++ + +E + A ++V + ++
Sbjct: 85 ASGAILFFDVTSRITCQNLARWVKEFQAV--------------VGNEAPIVVCANKIDIK 130
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLK 361
+ Q + + + E + ++++ E SAK +N FL L++I T D +
Sbjct: 131 NRQKIS--KKLVMEVLKGKNYEYFEISAKTAHNFGLP---FLHLARIFTGRPDLIFVS 183
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 60.3 bits (147), Expect = 4e-11
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPI 204
+ DT G +F ++ A +LVY T SF+++K + +E + P
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 205 VVAGNKSDMTSHHRAVHLEDVDIL-DTCGDLQF 236
V+ GNK D + V + L + GD+
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154
Score = 59.9 bits (146), Expect = 5e-11
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 31/144 (21%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV------VA 66
++ILG GVGK+ ++ R++ + YS +Y++T+ DF VT+ + A
Sbjct: 11 VIILGDSGVGKTSLMHRYVNDKYSQQYKATI----GADFLTKEVTVDGDKVATMQVWDTA 66
Query: 67 GN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIPI 110
G +S + +R E++ W E L + + + + P
Sbjct: 67 GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRD-EF--LVHA--NVNSPETFPF 121
Query: 111 VVAGNKSDMTSHHRAVHLEDVSEW 134
V+ GNK D + V + E
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQEL 145
Score = 44.5 bits (106), Expect = 1e-05
Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 37/132 (28%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQFPA 283
+ DT G +F ++ A +LVY T SF+++K + +E FP
Sbjct: 62 VWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 121
Query: 284 M------------RRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSA 331
+ + +S +A + D L SA
Sbjct: 122 VILGNKIDAEESKKIVSEKSAQEL-------A---------------KSLGDIPLFLTSA 159
Query: 332 KDNYNIKEVFRT 343
K+ N+ F
Sbjct: 160 KNAINVDTAFEE 171
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 60.8 bits (147), Expect = 8e-11
Identities = 35/207 (16%), Positives = 62/207 (29%), Gaps = 28/207 (13%)
Query: 17 GGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKSDMTSHH 76
G G+GKSC+ RF+ + + + L + DF V N +
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFG----------GRVVNNDHFLYWGE 84
Query: 77 RAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLY 136
+ LED E + + + I +F + + + + ++
Sbjct: 85 VSRSLEDCVECKMHIVEQTEF-IDDQTFQPHRS-------TALQPYIKRAAATKLASA-- 134
Query: 137 CELPKLRYVDILDTCGDLQFPAMRRLSIA-TAHAFLLVYSTT--CLESFQSVKCYFEEIR 193
KL Y + F + FLL + +F + +
Sbjct: 135 ---EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLY 191
Query: 194 EQRQDFQEIPIVVAGNKSDMTSHHRAV 220
Q + PIVV K D R +
Sbjct: 192 NQLAK-TKKPIVVVLTKCDEG-VERYI 216
Score = 44.2 bits (104), Expect = 3e-05
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 21/101 (20%)
Query: 248 HAFLLVYSTT--CLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-L 304
FLL + +F + + Q + P ++V T C
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKP------------IVVV-LTKCDE 210
Query: 305 ESFQSVKCYFEEIREQ--RQDFQLLECSAKDNYNIKEVFRT 343
+ ++ + +++ Q++E SA+ N N+ F T
Sbjct: 211 GVERYIR---DAHTFALSKKNLQVVETSARSNVNVDLAFST 248
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 60.0 bits (146), Expect = 9e-11
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 41/133 (30%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI--------- 61
LV++G G GK+ +KR L + +Y +T+ +++ FH IK +
Sbjct: 18 LVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I++ D+TS V ++V W +L +R + I
Sbjct: 78 GGLRDGYYIQAQCAIIM----FDVTSR---VTYKNVPNWHR-DL--VRV-------CENI 120
Query: 109 PIVVAGNKSDMTS 121
PIV+ GNK D+
Sbjct: 121 PIVLCGNKVDIKD 133
Score = 50.0 bits (120), Expect = 2e-07
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
+ DT G +F +R A ++++ T ++++V + ++ ++ IPIV+
Sbjct: 68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVL 124
Query: 207 AGNKSDMTS 215
GNK D+
Sbjct: 125 CGNKVDIKD 133
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 36/140 (25%)
Query: 216 HHRAVHLED----VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 271
H H ++ DT G +F +R A ++++ T ++++V + +
Sbjct: 53 HPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD 112
Query: 272 IREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--------QRQD 323
+ ++ +L + K ++ + ++++
Sbjct: 113 LVRVCENIPI--------------VLCGN----------KVDIKDRKVKAKSIVFHRKKN 148
Query: 324 FQLLECSAKDNYNIKEVFRT 343
Q + SAK NYN ++ F
Sbjct: 149 LQYYDISAKSNYNFEKPFLW 168
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 57.5 bits (140), Expect = 3e-10
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A +LV+STT ESF+++ + E++ + D IP + NK D+ + E+
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLL-DDSCIKNEE 131
Score = 55.2 bits (134), Expect = 2e-09
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A +LV+STT ESF+++ + E++ + D LV + L
Sbjct: 78 AQACVLVFSTTDRESFEAISSWREKVVAEVGDIP--------------TALVQNKIDLLD 123
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+K EE +R + S K++ N+ EVF+
Sbjct: 124 DSCIK--NEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160
Score = 53.7 bits (130), Expect = 6e-09
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 42/146 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+V++G VGKS +++R+ ++ Y+ T+ D R V ++ +
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEF 67
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++V T E +S W ++ +I
Sbjct: 68 DAITKAYYRGAQACVLV----FSTTDRES---FEAISSWRE-KVVAEV---------GDI 110
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEW 134
P + NK D+ + E+
Sbjct: 111 PTALVQNKIDLL-DDSCIKNEEAEGL 135
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 57.5 bits (140), Expect = 4e-10
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 41/145 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG G GKS ++ RF+ + + + ST+ +S+ V T+K EI
Sbjct: 15 LVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERY 74
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T+ E +W+ EL +
Sbjct: 75 HSLAPMYYRGAAAAIIV----FDVTNQAS---FERAKKWVQ-ELQAQG--------NPNM 118
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSE 133
+ +AGNKSD+ R V ED
Sbjct: 119 VMALAGNKSDL-LDARKVTAEDAQT 142
Score = 54.5 bits (132), Expect = 5e-09
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A ++V+ T SF+ K + +E++ Q + + +AGNKSD+ R V ED
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDL-LDARKVTAED 139
Score = 49.5 bits (119), Expect = 2e-07
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A ++V+ T SF+ K + +E++ Q ++ A L + + L
Sbjct: 85 AAAAIIVFDVTNQASFERAKKWVQELQAQGNP---------NMVMA----LAGNKSDLLD 131
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ + Q +E SAK N+KE+F
Sbjct: 132 ARKVT--AEDAQTYAQENGLFFMETSAKTATNVKEIFYEIAR 171
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 57.7 bits (140), Expect = 5e-10
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQD-FQEIPIVVAGNKSDMTSHHRAVHLED 224
+ +LV+ + +ESF+S K +FE ++ R D + + V+ NK+D+ V L+
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM 155
Score = 56.5 bits (137), Expect = 1e-09
Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 29/147 (19%)
Query: 10 RIRLVILGGQGVGKSCILKRF--LFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-PIV 64
R ++ ++G VGKS ++ F + + Y T ++ + T+ E+ +
Sbjct: 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLD 79
Query: 65 VAGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDE- 107
AG+ K ++ + V+ E W + + +
Sbjct: 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAW-------FELLKSARPDRERP 132
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ V+ NK+D+ V L+ +W
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDW 159
Score = 41.5 bits (98), Expect = 2e-04
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAH-AFLLVYSTTCLE 305
+ +LV+ + +ESF+S K +FE ++ R D +LV + T L
Sbjct: 97 VYYAILVFDVSSMESFESCKAWFELLKSARPD-----------RERPLRAVLVANKTDLP 145
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAK-DNYNIKEVFRTFLT 346
+ + ++ + SA + F + T
Sbjct: 146 PQRHQ-VRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIAT 188
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 57.2 bits (139), Expect = 6e-10
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ ++
Sbjct: 17 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
+VV D+T+ + S+W+ ++ R G ++
Sbjct: 77 RSLIPSYIRDSTVAVVV----YDITNTNS---FHQTSKWID-DVRTER--------GSDV 120
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
I++ GNK+D+ S R V E+
Sbjct: 121 IIMLVGNKTDL-SDKRQVSTEE 141
Score = 55.3 bits (134), Expect = 2e-09
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ ++VY T SF + +++R +R ++ I++ GNK+D+ S R V E+
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGS--DVIIMLVGNKTDL-SDKRQVSTEE 141
Score = 49.9 bits (120), Expect = 2e-07
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 17/99 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ ++VY T SF + +++R +R + LV + T L
Sbjct: 87 STVAVVVYDITNTNSFHQTSKWIDDVRTERGS---------DVIIM----LVGNKTDLSD 133
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V EE + + +E SAK YN+K++FR
Sbjct: 134 KRQVS--TEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 56.8 bits (138), Expect = 7e-10
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
+ DT G +F R S+ HA + VY T + SF S+ + EE ++ +
Sbjct: 73 LWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-ND 127
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
IP ++ GNK D+ V +
Sbjct: 128 IPRILVGNKCDL-RSAIQVPTDL 149
Score = 50.3 bits (121), Expect = 1e-07
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 35/142 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+++++G VGK+C+ RF + DR +T+ DF AV I I +
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI----GVDFRERAVDIDGERIKIQLWDT 76
Query: 66 AG----NKSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEI 108
AG KS + ++R VH + W+ E + ++I
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIE-E-------CKQHLLANDI 128
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
P ++ GNK D+ V +
Sbjct: 129 PRILVGNKCDL-RSAIQVPTDL 149
Score = 46.8 bits (112), Expect = 2e-06
Identities = 31/127 (24%), Positives = 49/127 (38%), Gaps = 28/127 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
+ DT G +F R S+ HA + VY T + SF S+ + EE ++
Sbjct: 73 LWDTAGQERF----RKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDI 128
Query: 282 PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAK---DNYN 336
P + LV + L S V + ++ L E SAK DN +
Sbjct: 129 PRI------------LVGNKCDLRSAIQVP--TDLAQKFADTHSMPLFETSAKNPNDNDH 174
Query: 337 IKEVFRT 343
++ +F T
Sbjct: 175 VEAIFMT 181
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 56.4 bits (137), Expect = 7e-10
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 41/145 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG VGKS ++ RF+ + + ST+ ++ + T+K EI
Sbjct: 9 LVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERY 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
IVV D+T+ W+ EL + I
Sbjct: 69 HSLAPMYYRGAQAAIVV----YDITNEES---FARAKNWVK-ELQRQA--------SPNI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSE 133
I ++GNK+D+ ++ RAV ++
Sbjct: 113 VIALSGNKADL-ANKRAVDFQEAQS 136
Score = 54.4 bits (132), Expect = 4e-09
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A A ++VY T ESF K + +E++ Q I I ++GNK+D+ ++ RAV ++
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASP--NIVIALSGNKADL-ANKRAVDFQE 133
Score = 50.2 bits (121), Expect = 1e-07
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A A ++VY T ESF K + +E++ Q +I A L + L +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVKELQRQASP---------NIVIA----LSGNKADLAN 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V F+E + +E SAK + N+ E+F
Sbjct: 126 KRAVD--FQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 57.4 bits (139), Expect = 8e-10
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G + +R LS A F+L +S S+++V + E+R + +P
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPN---VP 115
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 116 IVLVGTKLDL 125
Score = 56.6 bits (137), Expect = 1e-09
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 26/130 (20%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPA 283
+ + DT G + +R LS A F+L +S S+++V + E+R +
Sbjct: 59 LGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNV---- 114
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKD 333
+LV L +V + E R+ +ECS+K
Sbjct: 115 ----------PIVLVGTKLDLRDDKGYLADHTNVITS-TQGEELRKQIGAAAYIECSSKT 163
Query: 334 NYNIKEVFRT 343
N+K VF T
Sbjct: 164 QQNVKAVFDT 173
Score = 48.9 bits (117), Expect = 6e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
M ++ I+ V +G VGK+C+L + N + Y TV D +S + V +
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVN 58
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 56.9 bits (138), Expect = 8e-10
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 38/147 (25%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
++ILG GVGK+ ++ +++ +S++Y++T+ D +++ V + +I
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 70
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++V D+T+ + + + W E L S +
Sbjct: 71 QSLGVAFYRGADCCVLV----FDVTAPNT---FKTLDSWRD-EF--LIQA--SPRDPENF 118
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEWL 135
P VV GNK D+ +R V + W
Sbjct: 119 PFVVLGNKIDLE--NRQVATKRAQAWC 143
Score = 54.2 bits (131), Expect = 7e-09
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPIVVAGNKSDMTSHHRAV 220
A +LV+ T +F+++ + +E Q +D + P VV GNK D+ +R V
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQV 134
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A +LV+ T +F+++ + +E Q F+++ + LE+
Sbjct: 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENF---------PFVVLGNKIDLEN 131
Query: 307 FQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
Q + + + E SAK+ N+++ F+T
Sbjct: 132 RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT 168
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 56.9 bits (138), Expect = 9e-10
Identities = 30/142 (21%), Positives = 67/142 (47%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV LG Q VGK+ ++ RF+++++ + Y++T+ D S+ ++ T++ ++
Sbjct: 19 LVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERF 78
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
+VV D+T+ + + ++W+ ++ R G ++
Sbjct: 79 RSLIPSYIRDSTVAVVV----YDITNVNS---FQQTTKWID-DVRTER--------GSDV 122
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
I++ GNK+D+ R V +E+
Sbjct: 123 IIMLVGNKTDLA-DKRQVSIEE 143
Score = 55.4 bits (134), Expect = 3e-09
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ ++VY T + SFQ + +++R +R ++ I++ GNK+D+ R V +E+
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLA-DKRQVSIEE 143
Score = 50.4 bits (121), Expect = 2e-07
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ ++VY T + SFQ + +++R +R + LV + T L
Sbjct: 89 STVAVVVYDITNVNSFQQTTKWIDDVRTERGS---------DVIIM----LVGNKTDLAD 135
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V EE + + +E SAK YN+K++FR
Sbjct: 136 KRQVS--IEEGERKAKELNVMFIETSAKAGYNVKQLFRR 172
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 56.5 bits (137), Expect = 1e-09
Identities = 32/154 (20%), Positives = 56/154 (36%), Gaps = 41/154 (26%)
Query: 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK 59
+ P +++ +LG GVGKS I+ RF+ + + T+ ++ G K
Sbjct: 14 LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHK 73
Query: 60 -EI----------------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 96
I ++V D+T + +W+ EL +
Sbjct: 74 FLIWDTAGQERFHSLAPMYYRGSAAAVIV----YDITKQDS---FYTLKKWVK-ELKEHG 125
Query: 97 YVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLED 130
+ I + +AGNK D+ S R V L+D
Sbjct: 126 --------PENIVMAIAGNKCDL-SDIREVPLKD 150
Score = 55.3 bits (134), Expect = 3e-09
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ A ++VY T +SF ++K + +E++E + I + +AGNK D+ S R V L+D
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDL-SDIREVPLKD 150
Score = 51.1 bits (123), Expect = 9e-08
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 19/114 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ A ++VY T +SF ++K + +E++E + +I A + + L
Sbjct: 96 SAAAVIVYDITKQDSFYTLKKWVKELKEHGPE---------NIVMA----IAGNKCDLSD 142
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDEN 358
+ V ++ +E + ++E SAK+ NI+E+F+ QI + EN
Sbjct: 143 IREVP--LKDAKEYAESIGAIVVETSAKNAINIEELFQG--ISRQIPPLDPHEN 192
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 56.0 bits (136), Expect = 1e-09
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
++ +LVY T +SFQ VK + +E+R+ + EI + + GNK D+ R V +++
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLE-KERHVSIQE 133
Score = 54.4 bits (132), Expect = 3e-09
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+V+LG VGK+ ++ R+ N ++D++ +T+ ++ ++G + I
Sbjct: 9 VVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERF 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T + V W+ EL K+ G+EI
Sbjct: 69 HALGPIYYRDSNGAILV----YDITDEDS---FQKVKNWVK-ELRKML--------GNEI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+ + GNK D+ R V +++
Sbjct: 113 CLCIVGNKIDLE-KERHVSIQE 133
Score = 49.8 bits (120), Expect = 1e-07
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
++ +LVY T +SFQ VK + +E+R+ + I +V + LE
Sbjct: 79 SNGAILVYDITDEDSFQKVKNWVKELRKMLGN---------EICL----CIVGNKIDLEK 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
+ V +E + + SAK N I+E+F +++ T
Sbjct: 126 ERHVS--IQEAESYAESVGAKHYHTSAKQNKGIEELFLD--LCKRMIET 170
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 55.6 bits (135), Expect = 1e-09
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQ--RQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ LL +S +SFQ++ + +E ++ + P V+ GNK D++ R V E+
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEE 137
Query: 225 VDIL-DTCGDLQF 236
GD +
Sbjct: 138 AQAWCRDNGDYPY 150
Score = 55.6 bits (135), Expect = 2e-09
Identities = 27/146 (18%), Positives = 54/146 (36%), Gaps = 38/146 (26%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+++LG GVGKS ++ R++ N + + T+ + ++D V + +I
Sbjct: 10 VILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF 69
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
++ + +++S W E + Y +
Sbjct: 70 RSLRTPFYRGSDCCLLT----FSVDDSQS---FQNLSNWKK-EF--IYYA--DVKEPESF 117
Query: 109 PIVVAGNKSDMTSHHRAVHLEDVSEW 134
P V+ GNK D++ R V E+ W
Sbjct: 118 PFVILGNKIDIS--ERQVSTEEAQAW 141
Score = 44.4 bits (106), Expect = 1e-05
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 37/120 (30%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQ---RQDFQFPAM----------RRLSIATAH 293
+ LL +S +SFQ++ + +E ++ FP + R++S A
Sbjct: 80 SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQ 139
Query: 294 AFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
A+ C D+ E SAKD N+ F + ++L T
Sbjct: 140 AW-------C---------------RDNGDYPYFETSAKDATNVAAAFEEAVR--RVLAT 175
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 55.2 bits (134), Expect = 2e-09
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ A ++VY T E+F ++K + E+R+ I + +AGNK D+T R V D
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPP--SIVVAIAGNKCDLT-DVREVMERD 133
Score = 54.8 bits (133), Expect = 3e-09
Identities = 30/142 (21%), Positives = 48/142 (33%), Gaps = 41/142 (28%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
+ +LG GVGKS I+ RF+ +++ T+ ++ K I
Sbjct: 9 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 68
Query: 62 -------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEI 108
I+V D+T + W+ EL + I
Sbjct: 69 RALAPMYYRGSAAAIIV----YDITKEET---FSTLKNWVR-ELRQHG--------PPSI 112
Query: 109 PIVVAGNKSDMTSHHRAVHLED 130
+ +AGNK D+T R V D
Sbjct: 113 VVAIAGNKCDLT-DVREVMERD 133
Score = 49.0 bits (118), Expect = 3e-07
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
+ A ++VY T E+F ++K + E+R+ SI A + + L
Sbjct: 79 SAAAIIVYDITKEETFSTLKNWVRELRQHGPP---------SIVVA----IAGNKCDLTD 125
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTT 353
+ V + ++ +E SAK+ NI E+F +I +T
Sbjct: 126 VREVM--ERDAKDYADSIHAIFVETSAKNAININELFIE--ISRRIPST 170
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 53.3 bits (129), Expect = 1e-08
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE-IPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T +SF++++ ++ +++ ++ + + + GNK D+ H R + E
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL-EHMRTIKPEK 137
Score = 52.5 bits (127), Expect = 2e-08
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 39/149 (26%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHV-GAVTIK-EI------ 61
+++V+LG GK+ + F T+ +Y+ T+ D + R + G + + +I
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 62 ----------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFG 105
++V D+T++ +LED W + K+
Sbjct: 67 TIGGKMLDKYIYGAQGVLLV----YDITNYQSFENLED---WYT-VVKKVS-----EESE 113
Query: 106 DEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ + + GNK D+ H R + E +
Sbjct: 114 TQPLVALVGNKIDL-EHMRTIKPEKHLRF 141
Score = 47.2 bits (113), Expect = 1e-06
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A LLVY T +SF++++ ++ +++ ++ + + LV + LE
Sbjct: 80 AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV----------ALVGNKIDLEH 129
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+++K E+ Q F SAK ++ F+
Sbjct: 130 MRTIK--PEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAA 169
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 53.4 bits (129), Expect = 1e-08
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G +F R +I + AH ++VY T ESF +VK + +EI +
Sbjct: 69 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--N 121
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+ ++ GNK D+T + V
Sbjct: 122 VNKLLVGNKCDLT-TKKVVDYTT 143
Score = 49.2 bits (118), Expect = 4e-07
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + + + I +
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDT 72
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H +V +W L+ + + +S + +
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW-------LQEIDRYAS--ENVN 123
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+T + V
Sbjct: 124 KLLVGNKCDLT-TKKVVDYTT 143
Score = 48.8 bits (117), Expect = 5e-07
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 35/149 (23%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G +F R +I + AH ++VY T ESF +VK + +EI
Sbjct: 69 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY------ 117
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A+ + L+ C L + + V + +E LE SAK+ N++
Sbjct: 118 --------ASENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLGIPFLETSAKNATNVE 167
Query: 339 EVFRTFLTL------SQILTTNGDENSLK 361
+ F T +++++K
Sbjct: 168 QSFMTMAAEIKKRMGPGATAGGAEKSNVK 196
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 53.0 bits (128), Expect = 2e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T ++F + + E+ +I ++ GNK D +R V +
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYC-TRNDIVNMLVGNKIDK--ENREVDRNE 142
Score = 47.6 bits (114), Expect = 1e-06
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 34/100 (34%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR-------------------EQRQ---------- 322
A +LVY T ++F + + E+ E R+
Sbjct: 88 AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA 147
Query: 323 ---DFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENS 359
+E SAK ++ F + +I+ T G S
Sbjct: 148 RKHSMLFIEASAKTCDGVQCAFEE--LVEKIIQTPGLWES 185
Score = 47.2 bits (113), Expect = 1e-06
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++++I+G GVGKS +L RF +T+ +T+ DF V +++ +
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATI----GVDFKVKTISVDGNKAKLAIWDT 71
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ S++R + WL E +++ ++I
Sbjct: 72 AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN-E-------LETYCTRNDIV 123
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D +R V +
Sbjct: 124 NMLVGNKIDK--ENREVDRNE 142
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 52.6 bits (127), Expect = 2e-08
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T +SF +++ + I E ++ ++ GNK D+ R V E
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVN-DKRQVSKER 135
Score = 48.3 bits (116), Expect = 6e-07
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +LVY T +SF +++ + I E A+A ++ C +
Sbjct: 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEH--------------ASADVEKMILGNKCDVN 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E + + +E SAK N N++ F T
Sbjct: 127 DKRQVS--KERGEKLALDYGIKFMETSAKANINVENAFFTLAR 167
Score = 46.4 bits (111), Expect = 2e-06
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGK+C+L RF + ++ + ST+ DF + + + I +
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTI----GIDFKIRTIELDGKRIKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R +++ W +R + + +S ++
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW-------IRNIEEHAS--ADVE 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+ R V E
Sbjct: 116 KMILGNKCDVN-DKRQVSKER 135
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 73/384 (19%), Positives = 116/384 (30%), Gaps = 116/384 (30%)
Query: 7 DNERIRL-VILGGQGVGKSCI--LKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPI 63
+L I GGQG L R L+ T Y V DL A T+ E+
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEEL-RDLYQT----YHVLVGDL----IKFSAETLSEL-- 198
Query: 64 VVAGNKSDMTSHHRAVHLEDVSEWLY--CELPKLRYVIQSS-SFGDEIPIVVAGNKSDMT 120
D ++ EWL P Y++ S P++ +
Sbjct: 199 --IRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYLLSIPISC----PLIG------VI 244
Query: 121 SHHRAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMR-RLSIATAH------AFLLV 173
H YV G +R L AT H A +
Sbjct: 245 Q---LAH----------------YVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 174 YSTTCLESF-----QSVKCYFEEI--REQRQDFQEI---PIVVA-------GNKSDMTSH 216
+ + ESF +++ F I R + + P ++ G S M S
Sbjct: 285 ETDS-WESFFVSVRKAITVLF-FIGVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLS- 340
Query: 217 HRAVHLEDVD--ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCL------ESFQSVKCY 268
+ E V + T L PA +++ I+ LV L +S +
Sbjct: 341 ISNLTQEQVQDYVNKTNSHL--PAGKQVEIS------LVNGAKNLVVSGPPQSLYGLNLT 392
Query: 269 FEEIREQRQDFQ----FPAMRRLSIATAHAFLLV---YSTTCLESFQSVKCYFEEIREQR 321
+ + Q F R+L ++ FL V + + L + I +
Sbjct: 393 LRKAKAPSGLDQSRIPFSE-RKLKF--SNRFLPVASPFHSHLLVP------ASDLINKDL 443
Query: 322 QDFQLLECSAKDNYNIKE-VFRTF 344
+ +AKD I+ V+ TF
Sbjct: 444 VKNN-VSFNAKD---IQIPVYDTF 463
Score = 40.0 bits (93), Expect = 0.001
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 26/123 (21%)
Query: 248 HAF---LLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRL--SIATAHAFLLVYST 301
HA LL + T L + + K Y ++ F + L ++ +A L +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAI 159
Query: 302 TCLESF--Q-SVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT-FLTLSQILTTNGDE 357
F Q + YFEE+R+ Q + +L + ++ + TLS+++ T D
Sbjct: 160 -----FGGQGNTDDYFEELRDLYQTYHVL---------VGDLIKFSAETLSELIRTTLDA 205
Query: 358 NSL 360
+
Sbjct: 206 EKV 208
Score = 35.4 bits (81), Expect = 0.033
Identities = 46/304 (15%), Positives = 93/304 (30%), Gaps = 105/304 (34%)
Query: 4 VMCDNERIRLVILGGQGVGKSCILKRF---LFNTYSDRYRSTVEDLYSRDFHVGAVTIKE 60
++ +N + GG+ GK I + + +F T D T + + H + T +
Sbjct: 1664 IVINNPVNLTIHFGGEK-GKR-IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR- 1720
Query: 61 IPIVVAGNKSDM--TSH-HRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKS 117
K + T A+ L + + + +L K + +I + + AG
Sbjct: 1721 ------SEKGLLSATQFTQPALTL--MEKAAFEDL-KSKGLIPADA-------TFAG--- 1761
Query: 118 DMTSHH------------RAVHLEDVSEWLYCELPKLRYVDILDTCGDLQFPAMRRLSIA 165
H + +E + E+ R G A+ R +
Sbjct: 1762 -----HSLGEYAALASLADVMSIESL-----VEVVFYR--------GMTMQVAVPRDELG 1803
Query: 166 TAHAFLL------VYSTTCLESFQSVKCYFEEIREQRQDFQEI-----P---IVVAGNKS 211
++ ++ V ++ E+ Q V E + ++ EI V AG+
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYV-V--ERVGKRTGWLVEIVNYNVENQQYVAAGD-- 1858
Query: 212 DMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEE 271
L +D + L F ++++ I +S EE
Sbjct: 1859 ----------LRALDTVTNV--LNFIKLQKIDII-----------ELQKSLS-----LEE 1890
Query: 272 IREQ 275
+
Sbjct: 1891 VEGH 1894
Score = 35.0 bits (80), Expect = 0.040
Identities = 43/252 (17%), Positives = 76/252 (30%), Gaps = 73/252 (28%)
Query: 74 SHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSD--MTSHHRAVHLEDV 131
SH H+ V + +L+ F +P G +D T+ L V
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQ-----EQFNKILPEPTEGFAADDEPTT---PAEL--V 61
Query: 132 SEWL-YC-----ELPKLRYVDILDTC-GDLQFPAMRRLSIATAHAF---LLVYSTTCLES 181
++L Y ++ +L+ C + + + I HA LL + T L
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVK 118
Query: 182 FQSV-KCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMR 240
+ + K Y + + + A+ F A+
Sbjct: 119 TKELIKNYIT-------------ARIMAKRPFDKKSNSAL---------------FRAVG 150
Query: 241 RLSIATAHAFLLVYSTTCLESF--Q-SVKCYFEEIREQRQDFQFPAMRRLSIATAHAFL- 296
A + F Q + YFEE+R+ Q + + L I + L
Sbjct: 151 E---GNAQLVAI---------FGGQGNTDDYFEELRDLYQTYH-VLVGDL-IKFSAETLS 196
Query: 297 -LVYSTTCLESF 307
L+ +T E
Sbjct: 197 ELIRTTLDAEKV 208
Score = 31.2 bits (70), Expect = 0.80
Identities = 33/236 (13%), Positives = 67/236 (28%), Gaps = 93/236 (39%)
Query: 102 SSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVDILDTC---------- 151
++G I +V N ++T H + + E Y + + I+D
Sbjct: 1655 DTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-NY---SAMIFETIVDGKLKTEKIFKEI 1710
Query: 152 -------------GDL---QF--PAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIR 193
G L QF PA+ + A FE+++
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA----------------------FEDLK 1748
Query: 194 EQRQDFQEIPIVVAGNKSDMTSHH------------RAVHLED-VDILDTCGDLQFPAMR 240
+ AG H + +E V+++ G A+
Sbjct: 1749 S-KGLIPA-DATFAG--------HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 241 RLSIATAHAFLL------VYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIA 290
R + ++ ++ V ++ E+ Q V E + ++ + I
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYV-V--ERVGKRTGWL-------VEIV 1844
Score = 30.8 bits (69), Expect = 0.87
Identities = 59/381 (15%), Positives = 115/381 (30%), Gaps = 137/381 (35%)
Query: 75 HHRAVHLEDVSEWLYCELPKLRYVIQS--SSF--GDEIPIVVAGNKSDMTSHHRAVHLED 130
+ + +E + ++ L + + + G++I H A L
Sbjct: 66 GYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDI-------------HALAAKLLQ 110
Query: 131 VSEWLYCELPKLRYVDI---LDTCGDLQFPAMRRLSIA--------TAHAFLLVYSTTCL 179
++ L K + + I + + P ++ + A A +
Sbjct: 111 END---TTLVKTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI------- 159
Query: 180 ESF--Q-SVKCYFEEIREQRQDFQEIP---IVVAGNK--------SDMTSHH-RAVHLE- 223
F Q + YFEE+R+ Q + + I + D + +++
Sbjct: 160 --FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 224 ---------DVDILDTC-------GDLQF-------------PA-MR-RLSIATAH---- 248
D D L + G +Q P +R L AT H
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 249 --AFLLVYSTTCLESF-----QSVKCYFEEI--REQRQDFQFPAMRRLSIATAHAFLLVY 299
A + + + ESF +++ F I R +P S+ +
Sbjct: 278 VTAVAIAETDS-WESFFVSVRKAITVLF-FIGVRCYE---AYP---NTSLPPS------I 323
Query: 300 STTCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDEN- 358
LE+ + V I Q+ Q+ + K N ++ + ++L NG +N
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISL-----VNGAKNL 377
Query: 359 -------SLK------RRSSA 366
SL R++ A
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKA 398
Score = 28.9 bits (64), Expect = 3.9
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 32/75 (42%)
Query: 63 IVVAGNKSDMTSHHRAVHLEDVSEWL-YCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTS 121
V AG+ RA L+ V+ L + +L K+ + S
Sbjct: 1853 YVAAGDL-------RA--LDTVTNVLNFIKLQKIDIIELQKSL----------------- 1886
Query: 122 HHRAVHLEDVSEWLY 136
LE+V L+
Sbjct: 1887 -----SLEEVEGHLF 1896
Score = 28.1 bits (62), Expect = 6.6
Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 275 QRQ----DF--QFPAMRRL-SIATAHAFLLVYSTTCLESFQ----SVKCYFEEIREQ--R 321
Q Q D A + + + A H F Y + L+ ++ +F + + R
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNH-FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 322 QDFQLLECSAKDNYNI--KEVFRTFLTLSQILTTNGDENSLKR 362
+++ + + + +++F+ S T ++ L
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 52.7 bits (127), Expect = 2e-08
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G +F R +I + AH ++VY T ESF +VK + +EI +
Sbjct: 86 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--N 138
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+ ++ GNK D+T + V
Sbjct: 139 VNKLLVGNKCDLT-TKKVVDYTT 160
Score = 48.4 bits (116), Expect = 6e-07
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 29/128 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G +F R +I + AH ++VY T ESF +VK + +EI
Sbjct: 86 IWDTAGQERF----R-TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY------ 134
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A+ + L+ C L + + V + +E LE SAK+ N++
Sbjct: 135 --------ASENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLGIPFLETSAKNATNVE 184
Query: 339 EVFRTFLT 346
+ F T
Sbjct: 185 QSFMTMAA 192
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + + + I +
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTI----GVDFKIRTIELDGKTIKLQIWDT 89
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H +V +W L+ + + +S + +
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW-------LQEIDRYAS--ENVN 140
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+T + V
Sbjct: 141 KLLVGNKCDLT-TKKVVDYTT 160
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A F+L+Y T ESF +V+ + +I+ D +++ GNK DM R V E
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDME-DERVVSSER 135
Score = 49.6 bits (119), Expect = 2e-07
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A F+L+Y T ESF +V+ + +I+ + +A +L+ C +E
Sbjct: 81 AMGFILMYDITNEESFNAVQDWSTQIKTY--------------SWDNAQVLLVGNKCDME 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V E R+ F+ E SAKDN N+K+ F + I +
Sbjct: 127 DERVVS--SERGRQLADHLGFEFFEASAKDNINVKQTFER--LVDVICEKMSESLDTADP 182
Query: 364 SSAYVNKGK 372
+ +G
Sbjct: 183 AVTGAKQGP 191
Score = 47.3 bits (113), Expect = 2e-06
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
+++I+G VGK+ L R+ ++++ + STV DF V + K I + +
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTIYRNDKRIKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 65 AGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW-------STQIKTYSW--DNAQ 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK DM R V E
Sbjct: 116 VLLVGNKCDME-DERVVSSER 135
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 52.2 bits (126), Expect = 3e-08
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A L+VY T ++ + + + R I++ GNK+D+ R V E+
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADL-EAQRDVTYEE 142
Score = 49.5 bits (119), Expect = 2e-07
Identities = 31/147 (21%), Positives = 53/147 (36%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +I+G GVGKSC+L +F + T+ + +R V IK +I
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+T +S WL + L
Sbjct: 77 FRAVTRSYYRGAAGALMV----YDITRRST---YNHLSSWLT-DARNLT--------NPN 120
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I++ GNK+D+ R V E+ ++
Sbjct: 121 TVIILIGNKADL-EAQRDVTYEEAKQF 146
Score = 46.8 bits (112), Expect = 2e-06
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A L+VY T ++ + + + R + +L+ + LE
Sbjct: 88 AAGALMVYDITRRSTYNHLSSWLTDARNL--------------TNPNTVIILIGNKADLE 133
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + V +EE ++ + LE SAK N+++ F
Sbjct: 134 AQRDVT--YEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 52.7 bits (127), Expect = 3e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY ++++V+ + +E+R+ I I++ GNKSD+ H RAV ++
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDL-RHLRAVPTDE 132
Score = 51.1 bits (123), Expect = 9e-08
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK +I
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+ H E+V W L+ + +
Sbjct: 67 YRRITSAYYRGAVGALLV----YDIAKHLT---YENVERW-------LKELRDHAD--SN 110
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNKSD+ H RAV ++ +
Sbjct: 111 IVIMLVGNKSDL-RHLRAVPTDEARAF 136
Score = 47.7 bits (114), Expect = 1e-06
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY ++++V+ + +E+R+ A ++ +LV + + L
Sbjct: 78 AVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNKSDLR 123
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V +E R ++ + +E SA D+ N++E F+ LT
Sbjct: 124 HLRAVP--TDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT 164
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 52.6 bits (127), Expect = 3e-08
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVD 226
A+ +L Y T SF SV + E++R+ I ++ GNKSD+ S R V L +
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDL-SELREVSLAEAQ 158
Query: 227 IL-DTCGDLQF 236
L + L
Sbjct: 159 SLAEHYDILCA 169
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 35/145 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+LV++G VGK+C+++RF +S+R ST+ DF + + I+ + +
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI----GVDFTMKTLEIQGKRVKLQIWDT 85
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ S++R+ + V W+ ++ K G I
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIE-DVRKYA--------GSNIV 136
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEW 134
++ GNKSD+ S R V L +
Sbjct: 137 QLLIGNKSDL-SELREVSLAEAQSL 160
Score = 46.1 bits (110), Expect = 3e-06
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
A+ +L Y T SF SV + E++R+ LL+ + + L
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-------------NIVQLLIGNKSDLSE 148
Query: 307 FQSVKCYFEEIR---EQRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNG 355
+ V E + E +E SAKD+ N++E F ++++ +G
Sbjct: 149 LREVS--LAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR--VATELIMRHG 196
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
H ++VY T ESF +VK + EI + D + ++ GNK+D + V ED
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDD---VCRILVGNKNDDP-ERKVVETED 135
Score = 49.1 bits (118), Expect = 3e-07
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLES 306
H ++VY T ESF +VK + EI + D +LV +
Sbjct: 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC--------------RILVGNKNDDPE 127
Query: 307 FQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
+ V+ E+ + + QL E SAK+N N++E+F
Sbjct: 128 RKVVE--TEDAYKFAGQMGIQLFETSAKENVNVEEMFNC 164
Score = 48.3 bits (116), Expect = 6e-07
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+I+G GVGKS +L RF NT+S Y +T+ DF + V I + +
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI----GVDFKIRTVEINGEKVKLQIWDT 65
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ ++++R H +V WL+ + + D++
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLH----------EINQNCDDVC 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK+D + V ED
Sbjct: 116 RILVGNKNDDP-ERKVVETED 135
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL+Y ESF +V+ + +I+ D +++ GNK D+ R V ED
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDL-EDERVVPAED 149
Score = 48.4 bits (116), Expect = 6e-07
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A FLL+Y ESF +V+ + +I+ + +A +++ C LE
Sbjct: 95 AMGFLLMYDIANQESFAAVQDWATQIKTY--------------SWDNAQVILVGNKCDLE 140
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ R F+ E SAK+N N+K+VF +
Sbjct: 141 DERVVP--AEDGRRLADDLGFEFFEASAKENINVKQVFERLVD 181
Score = 46.1 bits (110), Expect = 4e-06
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G VGK+ L R+ ++++ + STV DF V V + I +
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV----GIDFKVKTVYRHDKRIKLQIWDT 78
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 79 AGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW-------ATQIKTYSW--DNAQ 129
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK D+ R V ED
Sbjct: 130 VILVGNKCDL-EDERVVPAED 149
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 52.2 bits (126), Expect = 3e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E+F + + E+ R+ + I++ GNKSD+ R V E+
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDL-ESRRDVKREE 148
Score = 47.6 bits (114), Expect = 1e-06
Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 35/145 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+ +I+G GVGKSC+L +F + + T+ +F V I I +
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----GVEFGARMVNIDGKQIKLQIWDT 77
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG +S S++R ++ W L Q SS +
Sbjct: 78 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW-------LEDARQHSS--SNMV 128
Query: 110 IVVAGNKSDMTSHHRAVHLEDVSEW 134
I++ GNKSD+ R V E+ +
Sbjct: 129 IMLIGNKSDL-ESRRDVKREEGEAF 152
Score = 46.8 bits (112), Expect = 2e-06
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E+F + + E+ R+ ++++ +L+ + + LE
Sbjct: 94 AAGALLVYDITRRETFNHLTSWLEDARQH--------------SSSNMVIMLIGNKSDLE 139
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
S + VK EE + +E SAK N++E F
Sbjct: 140 SRRDVK--REEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 180
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 52.3 bits (126), Expect = 3e-08
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+H ++VY T ESF VK + +EI + ++ GNK D+ R V +
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLK-DKRVVEYDV 135
Score = 48.8 bits (117), Expect = 5e-07
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
+H ++VY T ESF VK + +EI AT+ L+ C L+
Sbjct: 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------ATSTVLKLLVGNKCDLK 126
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V+ ++ +E LE SA D+ N+++ FLT+++ + + + +L
Sbjct: 127 DKRVVE--YDVAKEFADANKMPFLETSALDSTNVEDA---FLTMARQIKESMSQQNLNET 181
Query: 364 SSAYVNKGKV 373
+ +KG V
Sbjct: 182 TQKKEDKGNV 191
Score = 47.3 bits (113), Expect = 2e-06
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
+L+++G GVGKSC+L RF +TY++ Y ST+ DF + V + + +
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI----GVDFKIKTVELDGKTVKLQIWDT 64
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ +S++R H V W L+ + + ++ +
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW-------LQEIDRYAT--STVL 115
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
++ GNK D+ R V +
Sbjct: 116 KLLVGNKCDLK-DKRVVEYDV 135
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 51.8 bits (125), Expect = 3e-08
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
AHA LL+Y T SF +++ + EI E Q ++ +++ GNK D +H R V ED
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDS-AHERVVKRED 138
Score = 47.2 bits (113), Expect = 1e-06
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
AHA LL+Y T SF +++ + EI E A L++
Sbjct: 84 AHALLLLYDVTNKASFDNIQAWLTEIHEY--------------AQHDVALMLLGNKVDSA 129
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ VK E+ + + +E SAK N+ F
Sbjct: 130 HERVVK--REDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 170
Score = 42.2 bits (100), Expect = 7e-05
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 46/147 (31%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTY-SDRYRSTVEDLYSRDFHVGAVTIKEIPIVV---- 65
+++++G GVGK+C+L RF + + + STV DF + + + + +
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV----GIDFRNKVLDVDGVKVKLQMWD 66
Query: 66 -AGN---KSDMTSHHRAVH-------------LEDVSEWL-----YCELPKLRYVIQSSS 103
AG +S +++R H +++ WL Y +
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ------------ 114
Query: 104 FGDEIPIVVAGNKSDMTSHHRAVHLED 130
++ +++ GNK D +H R V ED
Sbjct: 115 --HDVALMLLGNKVDS-AHERVVKRED 138
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 52.7 bits (127), Expect = 3e-08
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL++ T +SF +V+ + +++ + IV+ GNK+D+ R V+
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQAN-AYCENPDIVLIGNKADLP-DQREVNERQ 163
Score = 51.6 bits (124), Expect = 6e-08
Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 33/182 (18%)
Query: 198 DFQEIPIVVAGNKSDMTSHHRA-VHLEDVDILDTCGDLQFPAMRRLSIAT-----AHAFL 251
DF+E +V + +S VHL+ + DT G +F R S+ T A FL
Sbjct: 61 DFREKRVVYNAQGPNGSSGKAFKVHLQ---LWDTAGQERF----R-SLTTAFFRDAMGFL 112
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK 311
L++ T +SF +V+ + +++ + +L+ + L + V
Sbjct: 113 LMFDLTSQQSFLNVRNWMSQLQAN------------AYCENPDIVLIGNKADLPDQREVN 160
Query: 312 CYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRRSSAYVN 369
+ RE + E SA N+++ TL ++ ++ K + VN
Sbjct: 161 --ERQARELADKYGIPYFETSAATGQNVEKA---VETLLDLIMKRMEQCVEKTQIPDTVN 215
Query: 370 KG 371
G
Sbjct: 216 GG 217
Score = 49.3 bits (118), Expect = 4e-07
Identities = 31/155 (20%), Positives = 55/155 (35%), Gaps = 44/155 (28%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+L+ LG GVGK+ L R+ N ++ ++ +TV DF V + K+
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV----GIDFREKRVVYNAQGPNGSSGKA 81
Query: 71 DM------------------TSHHRAVH-------------LEDVSEWLYCELPKLRYVI 99
T+ R +V W+ +
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM--------SQL 133
Query: 100 QSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
Q++++ + IV+ GNK+D+ R V+ E
Sbjct: 134 QANAYCENPDIVLIGNKADLP-DQREVNERQAREL 167
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 51.8 bits (125), Expect = 3e-08
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T +F ++K +F+ + E D E +++ GNKSDM R V +
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHAND--EAQLLLVGNKSDM--ETRVVTADQ 129
Score = 47.9 bits (115), Expect = 6e-07
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 31/83 (37%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR------------------EQRQ----------- 322
A +LVY T +F ++K +F+ + E R
Sbjct: 76 AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 135
Query: 323 --DFQLLECSAKDNYNIKEVFRT 343
+E SAK++ N+ E+F T
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFT 158
Score = 46.0 bits (110), Expect = 3e-06
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQIWDT 59
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R ++ +W + V + ++ DE
Sbjct: 60 AGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW-------FKTVNEHAN--DEAQ 110
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNKSDM R V +
Sbjct: 111 LLLVGNKSDM--ETRVVTADQ 129
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 52.3 bits (126), Expect = 3e-08
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A+A +L Y TC ESF+ + + EI + + ++ V+ GNK D+ + R V +
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQYASN--KVITVLVGNKIDL-AERREVSQQR 153
Score = 47.7 bits (114), Expect = 1e-06
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 22/122 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A+A +L Y TC ESF+ + + EI + A+ ++ L
Sbjct: 99 ANALILTYDITCEESFRCLPEWLREIEQY--------------ASNKVITVLVGNKIDLA 144
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLTLSQILTTNGDENSLKRR 363
+ V + E + QD LE SAK++ N++++ FL L+ L + +N+L
Sbjct: 145 ERREVS--QQRAEEFSEAQDMYYLETSAKESDNVEKL---FLDLACRLISEARQNTLVNN 199
Query: 364 SS 365
S
Sbjct: 200 VS 201
Score = 46.5 bits (111), Expect = 3e-06
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 41/147 (27%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI------- 61
++V++G GVGK+C+++RF + +T+ D + + +K +I
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 62 ---------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGD 106
I+ D+T + EW LR + Q +S +
Sbjct: 87 RFRSITQSYYRSANALILT----YDITCEES---FRCLPEW-------LREIEQYAS--N 130
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSE 133
++ V+ GNK D+ + R V + E
Sbjct: 131 KVITVLVGNKIDL-AERREVSQQRAEE 156
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 52.4 bits (126), Expect = 4e-08
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A L+VY + S+++ + E+RE D + + + GNKSD+ +H RAV E+
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDL-AHLRAVPTEE 140
Score = 49.7 bits (119), Expect = 3e-07
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R + IK +I
Sbjct: 15 KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D++ E+ + W L + +++ D
Sbjct: 75 YRAITSAYYRGAVGALIV----YDISKSSS---YENCNHW-------LSELRENAD--DN 118
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+ + + GNKSD+ +H RAV E+ +
Sbjct: 119 VAVGLIGNKSDL-AHLRAVPTEESKTF 144
Score = 42.8 bits (101), Expect = 6e-05
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A L+VY + S+++ + E+RE A + L+ + + L
Sbjct: 86 AVGALIVYDISKSSSYENCNHWLSELREN--------------ADDNVAVGLIGNKSDLA 131
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT-----LSQILTTNGDEN 358
++V EE + Q E SA ++ N+ + F + +S+ GD +
Sbjct: 132 HLRAVP--TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSS 189
Query: 359 SLKRRSSAYVNKGK 372
+ + A G
Sbjct: 190 ANGNANGASAPNGP 203
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 52.2 bits (126), Expect = 4e-08
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
I DT G ++ R +I + A LLV+ T +++ V+ + +E+ + +
Sbjct: 78 IWDTAGLERY----R-AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--T 130
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
I +++ GNKSD+ S R V E+
Sbjct: 131 IVVMLVGNKSDL-SQAREVPTEE 152
Score = 49.5 bits (119), Expect = 3e-07
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 41/148 (27%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI------- 61
++V++G GVGK+ +L RF N +S R+T+ + +R +G +K +I
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 62 ---------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGD 106
++V D+T H V W L+ + +
Sbjct: 86 RYRAITSAYYRGAVGALLV----FDLTKHQT---YAVVERW-------LKELYDHAE--A 129
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I +++ GNKSD+ S R V E+ +
Sbjct: 130 TIVVMLVGNKSDL-SQAREVPTEEARMF 156
Score = 45.7 bits (109), Expect = 5e-06
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 29/128 (22%)
Query: 227 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQF 281
I DT G ++ R +I + A LLV+ T +++ V+ + +E+ +
Sbjct: 78 IWDTAGLERY----R-AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDH------ 126
Query: 282 PAMRRLSIATAHAFLLVYSTTC-LESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIK 338
A A +++ L + V EE R + LE SA D+ N++
Sbjct: 127 --------AEATIVVMLVGNKSDLSQAREVP--TEEARMFAENNGLLFLETSALDSTNVE 176
Query: 339 EVFRTFLT 346
F T L
Sbjct: 177 LAFETVLK 184
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 51.9 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A F+L+Y T ESF +V+ + +I+ D +++ GNK DM R V E
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWD--NAQVILVGNKCDME-EERVVPTEK 150
Score = 47.6 bits (114), Expect = 1e-06
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A F+L+Y T ESF +V+ + +I+ + +A +++ C +E
Sbjct: 96 AMGFILMYDITNEESFNAVQDWATQIKTY--------------SWDNAQVILVGNKCDME 141
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V E+ + ++ F E SAK+N ++++ F +
Sbjct: 142 EERVVP--TEKGQLLAEQLGFDFFEASAKENISVRQAFERLVD 182
Score = 45.7 bits (109), Expect = 4e-06
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
+L+I+G VGK+ L R+ +T++ + STV DF V V K + + +
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV----GIDFKVKTVYRHEKRVKLQIWDT 79
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R V +W + S D
Sbjct: 80 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW-------ATQIKTYSW--DNAQ 130
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK DM R V E
Sbjct: 131 VILVGNKCDME-EERVVPTEK 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 51.8 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY ++++V+ + +E+R+ I I++ GNKSD+ H RAV ++
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDL-RHLRAVPTDE 156
Score = 49.9 bits (120), Expect = 2e-07
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI-------- 61
++V++G GVGKS +L RF N ++ +ST+ + +R V TIK +I
Sbjct: 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+ H E+V W L+ + +
Sbjct: 91 YRAITSAYYRGAVGALLV----YDIAKHLT---YENVERW-------LKELRDHAD--SN 134
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNKSD+ H RAV ++ +
Sbjct: 135 IVIMLVGNKSDL-RHLRAVPTDEARAF 160
Score = 46.1 bits (110), Expect = 3e-06
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY ++++V+ + +E+R+ A ++ +LV + + L
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNKSDLR 147
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++V +E R ++ +E SA D+ N++ F+T LT
Sbjct: 148 HLRAVP--TDEARAFAEKNGLSFIETSALDSTNVEAAFQTILT 188
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 51.9 bits (125), Expect = 4e-08
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A FLL++ T +SF +V+ + +++ + IV+ GNKSD+ RAV E+
Sbjct: 94 AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLE-DQRAVKEEE 149
Score = 49.2 bits (118), Expect = 3e-07
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 44/151 (29%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGNKS 70
I+ + LG GVGK+ +L ++ ++ ++ +TV DF V + A +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV----GIDFREKRVVYRANGPDGAVGRG 67
Query: 71 DM------------------TSHHRAVH-------------LEDVSEWLYCELPKLRYVI 99
T+ R +V W+ +
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWI--------SQL 119
Query: 100 QSSSFGDEIPIVVAGNKSDMTSHHRAVHLED 130
Q ++ + IV+ GNKSD+ RAV E+
Sbjct: 120 QMHAYSENPDIVLCGNKSDLE-DQRAVKEEE 149
Score = 46.5 bits (111), Expect = 3e-06
Identities = 40/163 (24%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 198 DFQEIPIVVAGNKSDMTSHH-RAVHLEDVDILDTCGDLQFPAMRRLSIAT-----AHAFL 251
DF+E +V N D + +HL+ + DT G +F R S+ T A FL
Sbjct: 47 DFREKRVVYRANGPDGAVGRGQRIHLQ---LWDTAGLERF----R-SLTTAFFRDAMGFL 98
Query: 252 LVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA------FLLVYSTTCLE 305
L++ T +SF +V+ + +++ HA +L + + LE
Sbjct: 99 LLFDLTNEQSFLNVRNWISQLQM------------------HAYSENPDIVLCGNKSDLE 140
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
++VK EE RE ++ E SA + NI L
Sbjct: 141 DQRAVK--EEEARELAEKYGIPYFETSAANGTNISHAIEMLLD 181
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 51.8 bits (125), Expect = 4e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E++ ++ + + R I I++ GNK D+ R V +
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDL-DADREVTFLE 137
Score = 48.7 bits (117), Expect = 5e-07
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +++G G GKSC+L +F+ + D T+ + S+ +VG +K +I
Sbjct: 12 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+TS ++ W L +S
Sbjct: 72 FRSVTRSYYRGAAGALLV----YDITSRET---YNALTNW-------LTDARMLAS--QN 115
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I I++ GNK D+ R V + S +
Sbjct: 116 IVIILCGNKKDL-DADREVTFLEASRF 141
Score = 47.2 bits (113), Expect = 1e-06
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E++ ++ + + R A+ + +L + L+
Sbjct: 83 AAGALLVYDITSRETYNALTNWLTDARML--------------ASQNIVIILCGNKKDLD 128
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + V F E Q + LE SA N++E F
Sbjct: 129 ADREVT--FLEASRFAQENELMFLETSALTGENVEEAFVQCAR 169
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 51.5 bits (124), Expect = 6e-08
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A LLVY T E++ S+ + + R I +++ GNK D+ R V +
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDL-DPEREVTFLE 152
Score = 48.8 bits (117), Expect = 4e-07
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 41/147 (27%)
Query: 12 RLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE-DLYSRDFHVGAVTIK-EI-------- 61
+ +++G G GKSC+L +F+ N + T+ + SR +VG T+K +I
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86
Query: 62 --------------PIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSFGDE 107
++V D+TS ++ W L +S
Sbjct: 87 FRSVTRSYYRGAAGALLV----YDITSRET---YNSLAAW-------LTDARTLAS--PN 130
Query: 108 IPIVVAGNKSDMTSHHRAVHLEDVSEW 134
I +++ GNK D+ R V + S +
Sbjct: 131 IVVILCGNKKDL-DPEREVTFLEASRF 156
Score = 47.2 bits (113), Expect = 2e-06
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHA-FLLVYSTTCLE 305
A LLVY T E++ S+ + + R A+ + +L + L+
Sbjct: 98 AAGALLVYDITSRETYNSLAAWLTDARTL--------------ASPNIVVILCGNKKDLD 143
Query: 306 SFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ V F E Q + LE SA N++E F
Sbjct: 144 PEREVT--FLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 51.5 bits (124), Expect = 7e-08
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM-----TSHHRAVH 221
A LL+Y TC +SF +++ + + I + + +PI++ GNK+D+ T + V
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--TVPIMLVGNKADIRDTAATEGQKCVP 158
Query: 222 LED 224
Sbjct: 159 GHF 161
Score = 47.3 bits (113), Expect = 2e-06
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 23/108 (21%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV------YS 300
A LL+Y TC +SF +++ + + I + + +LV
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE-------------TVPIMLVGNKADIRD 147
Query: 301 TTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRTFLT 346
T E + V + E SAKD NI E
Sbjct: 148 TAATEGQKCVP--GHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193
Score = 45.7 bits (109), Expect = 5e-06
Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 39/146 (26%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++V+ G VGKS L R N + + +T+ DF + + + V+
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATL----GVDFQMKTLIVDGERTVLQLWDT 84
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG +S S+ R ++ EW + + ++ + +P
Sbjct: 85 AGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-------VDMIEDAAH--ETVP 135
Query: 110 IVVAGNKSDM-----TSHHRAVHLED 130
I++ GNK+D+ T + V
Sbjct: 136 IMLVGNKADIRDTAATEGQKCVPGHF 161
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 51.3 bits (123), Expect = 7e-08
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIP 203
+ + DT G +F +R L FLL +S SFQ+V + EIR P
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK---AP 126
Query: 204 IVVAGNKSDM 213
I++ G +SD+
Sbjct: 127 IILVGTQSDL 136
Score = 49.7 bits (119), Expect = 3e-07
Identities = 31/131 (23%), Positives = 45/131 (34%), Gaps = 28/131 (21%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPA 283
+ + DT G +F +R L FLL +S SFQ+V + EIR
Sbjct: 70 LQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA---- 125
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKC---YFEEIREQRQDFQL---LECS 330
+LV L K E + ++ + +ECS
Sbjct: 126 ----------PIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175
Query: 331 AKDNYNIKEVF 341
A N+KEVF
Sbjct: 176 ALTQKNLKEVF 186
Score = 46.3 bits (110), Expect = 4e-06
Identities = 12/55 (21%), Positives = 24/55 (43%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ ++ V++G VGK+ ++ + N Y Y T D +S V ++
Sbjct: 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVR 69
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 51.6 bits (124), Expect = 7e-08
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 147 ILDTCGDLQFPAMRRLSIAT-----AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQE 201
+ DT G +F R +I T A +LVY T +F ++K +F+ + E D E
Sbjct: 73 LWDTAGQERF----R-TITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAND--E 125
Query: 202 IPIVVAGNKSDMTSHHRAVHLED 224
+++ GNKSDM R V +
Sbjct: 126 AQLLLVGNKSDM--ETRVVTADQ 146
Score = 48.1 bits (115), Expect = 9e-07
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 31/86 (36%)
Query: 292 AHAFLLVYSTTCLESFQSVKCYFEEIR------------------EQRQ----------- 322
A +LVY T +F ++K +F+ + E R
Sbjct: 93 AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAK 152
Query: 323 --DFQLLECSAKDNYNIKEVFRTFLT 346
+E SAK++ N+ E+F T
Sbjct: 153 ELGIPFIESSAKNDDNVNEIFFTLAK 178
Score = 45.8 bits (109), Expect = 6e-06
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 36/141 (25%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTI--KEIPIVV--- 65
++++++G GVGKSC+L RF+ + ++ + +T+ DF + V I K++ + +
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI----GIDFKIKTVDINGKKVKLQLWDT 76
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG ++ T+++R ++ +W + V + ++ DE
Sbjct: 77 AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW-------FKTVNEHAN--DEAQ 127
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNKSDM R V +
Sbjct: 128 LLLVGNKSDM--ETRVVTADQ 146
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 51.1 bits (123), Expect = 7e-08
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
A +LVY T E+F + + + I + + + +++ GNK D R + +
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASE--DAELLLVGNKLDCE-TDREITRQQ 153
Score = 46.8 bits (112), Expect = 2e-06
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTC-LE 305
A +LVY T E+F + + + I + A+ A LL+ E
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKMIDKY--------------ASEDAELLLVGNKLDCE 144
Query: 306 SFQSVKCYFEEIR---EQRQDFQLLECSAKDNYNIKEVFRTFLT 346
+ + + ++ +Q + E SAKDN+N+ E+F +
Sbjct: 145 TDREIT--RQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186
Score = 45.7 bits (109), Expect = 5e-06
Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 35/141 (24%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV----- 65
++++I+G +GVGK+ +++RF +T+ + +STV DF + V ++ I +
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTV----GVDFKIKTVELRGKKIRLQIWDT 82
Query: 66 AGN---KSDMTSHHRAVH-------------LEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
AG S ++++R+ +D+ +W ++ + + +S ++
Sbjct: 83 AGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW-------MKMIDKYAS--EDAE 133
Query: 110 IVVAGNKSDMTSHHRAVHLED 130
+++ GNK D R + +
Sbjct: 134 LLLVGNKLDCE-TDREITRQQ 153
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 49.8 bits (119), Expect = 1e-07
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV-EDLYSRDFHVGAVTIK-EI--------- 61
LV+LG VGKS I+ RF+ N +++ T+ ++ + T+K EI
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 62 ----PIVVAGNKSDMTSHH--RAVHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGN 115
P ++ + + + W+ EL + +I I + GN
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVK-ELHEQA--------SKDIIIALVGN 116
Query: 116 KSDMT--SHHRAVHLEDVSEW 134
K D R V E+ +
Sbjct: 117 KIDXLQEGGERKVAREEGEKL 137
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 14/119 (11%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRR 286
I DT G +F ++ A A L+VY T +SF + + +E+ EQ
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK-------- 107
Query: 287 LSIATAHAFLLVYSTTCLESFQSVKCYFEEIRE--QRQDFQLLECSAKDNYNIKEVFRT 343
L+ L+ K EE + + + E SAK N+ +VF
Sbjct: 108 ----DIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG 162
Score = 38.6 bits (90), Expect = 0.001
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVV 206
I DT G +F ++ A A L+VY T +SF + + +E+ EQ +I I +
Sbjct: 56 IWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--DIIIAL 113
Query: 207 AGNKSDMT--SHHRAVHLEDVDILDTCGDLQF 236
GNK D R V E+ + L L F
Sbjct: 114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLLF 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIV 205
+ DT G + +R LS + A L+ + + E+ SV + EI+E + ++
Sbjct: 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKML 115
Query: 206 VAGNKSDM 213
+ G KSD+
Sbjct: 116 LVGCKSDL 123
Score = 45.1 bits (107), Expect = 8e-06
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ ++V++G GK+ +L F + + + Y TV + Y+ F + I+
Sbjct: 7 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE 56
Score = 42.0 bits (99), Expect = 7e-05
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 37/134 (27%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQFPAMR 285
+ DT G + +R LS + A L+ + + E+ SV + EI+E
Sbjct: 59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE----------- 107
Query: 286 RLSIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLE 328
LLV + L + + +++ + +E
Sbjct: 108 -------FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160
Query: 329 CSAKDN-YNIKEVF 341
CSA + +++++F
Sbjct: 161 CSALQSENSVRDIF 174
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 50.3 bits (120), Expect = 2e-07
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQEIPIVVA 207
DT G + +R L + + A LL + + E+ S K + EI + +++
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLI 137
Query: 208 GNKSDM 213
G K+D+
Sbjct: 138 GCKTDL 143
Score = 44.1 bits (104), Expect = 2e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LV++G GK+ +L+ + Y + Y TV + Y+ ++
Sbjct: 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVE 76
Score = 41.4 bits (97), Expect = 2e-04
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 29/130 (22%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSV-KCYFEEIREQRQDFQFPAMRRL 287
DT G + +R L + + A LL + + E+ S K + EI +
Sbjct: 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--------- 131
Query: 288 SIATAHAFLLV---------YSTTCLESFQSVKC-YFEEIREQRQD---FQLLECSAKDN 334
LL+ ST S Q +E+ + LE SA +
Sbjct: 132 -----TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186
Query: 335 -YNIKEVFRT 343
+I +FRT
Sbjct: 187 EKSIHSIFRT 196
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 49.6 bits (119), Expect = 3e-07
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G ++ +R LS A + LL ++ SF ++ + EI+ V+
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLV 133
Query: 208 GNKSDM 213
G K D+
Sbjct: 134 GLKVDL 139
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G ++ +R LS A + LL ++ SF ++ + EI+ +
Sbjct: 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------- 129
Query: 288 SIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQD---FQLLECSAKDNYNIKEVF 341
+LV L S +E + Q +E S+ + EVF
Sbjct: 130 -------TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179
Score = 46.9 bits (112), Expect = 2e-06
Identities = 12/51 (23%), Positives = 22/51 (43%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+ +++V++G VGK+C+L F Y TV + +S
Sbjct: 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQEIP 203
+ + DT G + +R LS A F+L +S S+++V E++ +P
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VP 114
Query: 204 IVVAGNKSDM 213
IV+ G K D+
Sbjct: 115 IVLVGTKLDL 124
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 26/131 (19%)
Query: 225 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQFPA 283
+ + DT G + +R LS A F+L +S S+++V E++
Sbjct: 58 LGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGV---- 113
Query: 284 MRRLSIATAHAFLLV-------YSTTCLESFQSVKC-YFEEIREQRQD---FQLLECSAK 332
+LV + E ++ +ECS+K
Sbjct: 114 ----------PIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163
Query: 333 DNYNIKEVFRT 343
N+K VF
Sbjct: 164 SQENVKGVFDA 174
Score = 48.5 bits (116), Expect = 4e-07
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
M + I+ V +G VGK+C+L + NT+ Y TV D +S + V T+
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVN 57
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 49.4 bits (118), Expect = 3e-07
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIP 203
+ + DT G + +R LS FL+ +S SF++V+ ++ E+R + P
Sbjct: 80 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN---TP 136
Query: 204 IVVAGNKSDM 213
I++ G K D+
Sbjct: 137 IILVGTKLDL 146
Score = 48.6 bits (116), Expect = 7e-07
Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 32/136 (23%)
Query: 224 DVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQ------- 275
++ + DT G + +R LS FL+ +S SF++V+ ++ E+R
Sbjct: 79 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 138
Query: 276 --------RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLL 327
R D + +L + L + + + L
Sbjct: 139 LVGTKLDLRDDKD--TIEKLKEKKLT---PITYPQGLAMAKEIGAV-----------KYL 182
Query: 328 ECSAKDNYNIKEVFRT 343
ECSA +K VF
Sbjct: 183 ECSALTQRGLKTVFDE 198
Score = 44.0 bits (104), Expect = 2e-05
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 25/135 (18%)
Query: 1 MKPVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKE 60
M+ + + I+ V++G VGK+C+L + N + Y TV D YS + V +
Sbjct: 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 80
Query: 61 IPIVVAG------------NKSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSF 104
AG ++D+ ++ E+V Y E+
Sbjct: 81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV---------RHH 131
Query: 105 GDEIPIVVAGNKSDM 119
PI++ G K D+
Sbjct: 132 CPNTPIILVGTKLDL 146
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 145 VDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPI 204
+ + DT G + +R LS FL+ +S SFQ+VK + + E ++ +P
Sbjct: 68 LGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW--VPELKEYAPNVPF 125
Query: 205 VVAGNKSDM 213
++ G + D+
Sbjct: 126 LLIGTQIDL 134
Score = 49.0 bits (117), Expect = 4e-07
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 25/128 (19%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
++ V++G VGK+C+L + + + + Y TV D Y+ VG AG
Sbjct: 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 68 N------------KSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSFGDEIPIV 111
+D+ +V ++V E EL + +P +
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPEL---------KEYAPNVPFL 126
Query: 112 VAGNKSDM 119
+ G + D+
Sbjct: 127 LIGTQIDL 134
Score = 47.1 bits (112), Expect = 2e-06
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 31/156 (19%)
Query: 202 IPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLES 261
+P V +T + L + DT G + +R LS FL+ +S S
Sbjct: 48 VPTVFDHYAVSVTVGGKQYLLG---LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS 104
Query: 262 FQSVKCY-FEEIREQRQDFQFPAMRRLSIATAHAFLLV-------YSTTCLESFQSVKCY 313
FQ+VK E++E + FLL+ L +K
Sbjct: 105 FQNVKEEWVPELKEYAPNV--------------PFLLIGTQIDLRDDPKTLARLNDMKEK 150
Query: 314 F------EEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+++ ++ +ECSA +K VF
Sbjct: 151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 49.4 bits (118), Expect = 4e-07
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 147 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIV 205
+ DT G + +R LS L+ +S +S +++ + E++ + +PI+
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPII 133
Query: 206 VAGNKSDM 213
+ NK D+
Sbjct: 134 LVANKKDL 141
Score = 48.6 bits (116), Expect = 6e-07
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 36/135 (26%)
Query: 227 ILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMR 285
+ DT G + +R LS L+ +S +S +++ + E++
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH----------- 125
Query: 286 RLSIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLE 328
+LV +K ++ R + LE
Sbjct: 126 -------FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178
Query: 329 CSAKDNYNIKEVFRT 343
CSAK ++EVF T
Sbjct: 179 CSAKTKEGVREVFET 193
Score = 45.5 bits (108), Expect = 7e-06
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LV++G GK+C+L F + + + Y TV + Y D V ++
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVE 74
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 47.4 bits (113), Expect = 1e-06
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 38/152 (25%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDR--YRSTVE-DLYSRDFHVGAVTIKEIPIVV- 65
R++L+I+G G GK+ +L++ + SD +TV D+ + +++ + V
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 66 --AGNKS-------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQSSSF 104
AG + D++ V + + WL +
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEV--DAMKPWL----------FNIKAR 109
Query: 105 GDEIPIVVAGNKSDMTS-HHRAVHLEDVSEWL 135
P+++ G D++ R + +++ L
Sbjct: 110 ASSSPVILVGTHLDVSDEKQRKACMSKITKEL 141
Score = 42.0 bits (99), Expect = 1e-04
Identities = 15/117 (12%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 167 AHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDV 225
+L VY + ++ ++K + I+ + P+++ G D++ +
Sbjct: 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKARASS---SPVILVGTHLDVSDEKQRKACMSK 136
Query: 226 DILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFP 282
+ FPA+R E ++ + I + +F+
Sbjct: 137 ITKELLNKRGFPAIRDYHF-----------VNATEESDALAKLRKTIINESLNFKIR 182
Score = 33.1 bits (76), Expect = 0.084
Identities = 11/106 (10%), Positives = 38/106 (35%), Gaps = 23/106 (21%)
Query: 247 AHAFLLVYSTTCLES-FQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLE 305
+L VY + ++ ++K + I+ + A++ +LV + +
Sbjct: 80 RALYLAVYDLSKGQAEVDAMKPWLFNIKAR--------------ASSSPVILVGTHLDVS 125
Query: 306 SFQSVKCYFEEIREQRQD--------FQLLECSAKDNYNIKEVFRT 343
+ K +I ++ + + +++ + ++ +T
Sbjct: 126 DEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 47.4 bits (113), Expect = 1e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R LS + A L+ + + E+ SV + EI+E + +++
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLV 138
Query: 208 GNKSDM 213
G KSD+
Sbjct: 139 GCKSDL 144
Score = 44.7 bits (106), Expect = 1e-05
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 6 CDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
N + ++V++G GK+ +L F + + + Y TV + Y+ F + I+
Sbjct: 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIE 77
Score = 39.7 bits (93), Expect = 6e-04
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 37/132 (28%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G + +R LS + A L+ + + E+ SV + EI+E
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQE------------- 128
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
LLV + L + + +++ + +ECS
Sbjct: 129 -----FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 183
Query: 331 AKDN-YNIKEVF 341
A + +++++F
Sbjct: 184 ALQSENSVRDIF 195
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 47.4 bits (113), Expect = 1e-06
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R LS L+ +S +S +++ + E++ + +PI++
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILV 135
Query: 208 GNKSDM 213
GNK D+
Sbjct: 136 GNKKDL 141
Score = 45.9 bits (109), Expect = 5e-06
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 36/131 (27%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQFPAMRRL 287
DT G + +R LS L+ +S +S +++ + E++
Sbjct: 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH------------- 125
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
+LV +K EE R+ F LECS
Sbjct: 126 -----FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180
Query: 331 AKDNYNIKEVF 341
AK ++EVF
Sbjct: 181 AKTKEGVREVF 191
Score = 44.7 bits (106), Expect = 1e-05
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
R +LVI+G GK+C+L F + + + Y TV + Y D V ++
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVE 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 46.3 bits (110), Expect = 3e-06
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQRQDFQEIPIVVA 207
DT G + +R L A LL + T SF ++ ++ E+ + +PI+V
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVV 144
Query: 208 GNKSDM 213
G K+D+
Sbjct: 145 GCKTDL 150
Score = 44.8 bits (106), Expect = 1e-05
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIK 59
+++V++G G GK+ +L F + + Y TV + Y + V +
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Score = 44.8 bits (106), Expect = 1e-05
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 32/129 (24%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKC-YFEEIREQ------------ 275
DT G + +R L A LL + T SF ++ ++ E+
Sbjct: 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 276 ---RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
R+D R + V E +SV LECSA+
Sbjct: 148 TDLRKDKSLVNKLR-----RNGLEPVTYHRGQEMARSVGAV-----------AYLECSAR 191
Query: 333 DNYNIKEVF 341
+ N+ VF
Sbjct: 192 LHDNVHAVF 200
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 45.5 bits (108), Expect = 5e-06
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQRQDFQEIPIVVA 207
DT G + +R LS L+ +S SF++V+ ++ E+R + PI++
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILV 115
Query: 208 GNKSDM 213
G K D+
Sbjct: 116 GTKLDL 121
Score = 45.5 bits (108), Expect = 6e-06
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 32/129 (24%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVK-CYFEEIREQ------------ 275
DT G + +R LS L+ +S SF++V+ ++ E+R
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118
Query: 276 ---RQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK 332
R D L T + Q + ++ + LECSA
Sbjct: 119 LDLRDDKDTIEK-----------LKEKKLTPITYPQG-----LAMAKEIGAVKYLECSAL 162
Query: 333 DNYNIKEVF 341
+K VF
Sbjct: 163 TQRGLKTVF 171
Score = 41.7 bits (98), Expect = 1e-04
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 25/127 (19%)
Query: 9 ERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAGN 68
+ I+ V++G VGK+C+L + N + Y TV D YS + V + AG
Sbjct: 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 69 ------------KSDMTSHHRAVH----LEDVSEWLYCELPKLRYVIQSSSFGDEIPIVV 112
++D++ ++ E+V Y E+ PI++
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV---------RHHCPNTPIIL 114
Query: 113 AGNKSDM 119
G K D+
Sbjct: 115 VGTKLDL 121
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 8e-06
Identities = 56/454 (12%), Positives = 121/454 (26%), Gaps = 138/454 (30%)
Query: 13 LVILGGQGVGKSC----------ILKRFLFNTY------SDRYRSTVE---DLYSR---D 50
++I G G GK+ + + F + + + +E L + +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 51 FHVGAVTIKEIPIV---VAGNKSDMTSHHRAVH----LEDVSEW-------LYCELPKLR 96
+ + I + + + + L +V L C+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----- 267
Query: 97 YVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLED------VSEWLYCELPKLRYVDILDT 150
++ ++ F + A + ++ H ++ L + ++L C L +
Sbjct: 268 -ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP----REV 322
Query: 151 CGDL-----QFPAMRRLSIATAHAFLLV----YSTT---CLESFQSVKCYFEEIREQRQD 198
R +AT + V +T L + E R+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKMFDR 377
Query: 199 ---FQE---IPIVVAGNK-SDMTSHHRAVHLEDV-DILDTCGDL----QFPAMRRLSIAT 246
F IP ++ D+ DV +++ + P +SI
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIK-------SDVMVVVNKLHKYSLVEKQPKESTISI-- 428
Query: 247 AHAFLLVYSTTC----------LESFQSVKCY---------------------------- 268
+ L ++ + K +
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 269 --FEEIREQRQDFQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQL 326
R DF+F + + + A+ S L + Q +K Y I + ++
Sbjct: 488 ERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSI--LNTLQQLKFYKPYICDNDPKYER 543
Query: 327 LECSAKD---NYNIKEVFRTFLTLSQILTTNGDE 357
L + D + + L +I DE
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 42.5 bits (99), Expect = 2e-04
Identities = 46/321 (14%), Positives = 93/321 (28%), Gaps = 82/321 (25%)
Query: 75 HHRAVHLE-DVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSE 133
HH H++ + E Y + D + + + +DV +
Sbjct: 1 HHHHHHMDFETGEHQYQ-------------YKDILSVFEDAFVDNFD-------CKDVQD 40
Query: 134 WLYCELPKLRYVDILDTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQS--VKCYFEE 191
L K I+ + + RL F L S Q V+ + EE
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVS--GTLRL-------F------WTLLSKQEEMVQKFVEE 85
Query: 192 IREQRQDFQEIPIVVAGNKSDMTSHHRAVHLEDVDILDTCGDLQ-FP-----------AM 239
+ F PI + S +++E D L D Q F +
Sbjct: 86 VLRINYKFLMSPI---KTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKL 140
Query: 240 RR-LSIATAHAFLLVY-------STTCLESFQS--VKCYFE-EI------REQRQDFQFP 282
R+ L +L+ + L+ S V+C + +I +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 283 AMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQLLECSAK-----DNYNI 337
+++L + +++ + ++K I+ + + + N
Sbjct: 201 MLQKLL----YQIDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 338 KEVFRTFLTLSQILTTNGDEN 358
+ + F +IL T +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQ 276
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 46.1 bits (109), Expect = 1e-05
Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 33/152 (21%)
Query: 5 MCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV------EDLYSRDFHVGAVTI 58
+ + I++ ++G GK+ +LK+ + T+ + T + + +
Sbjct: 36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDEL 95
Query: 59 KEIPIVV---AGNKSDMTSHH-----RAVHL--------EDVSEWLYCELPKLRYVIQSS 102
KE G + SH +V++ + WL I+
Sbjct: 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRH--------IE-- 145
Query: 103 SFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEW 134
+G + P++V NK D + + + ++E
Sbjct: 146 KYGGKSPVIVVMNKIDE-NPSYNIEQKKINER 176
Score = 39.6 bits (92), Expect = 0.001
Identities = 7/58 (12%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 167 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTSHHRAVHLED 224
+ ++L+ + + + + I + P++V NK D + + +
Sbjct: 122 SSVYMLLLDSR---TDSNKHYWLRHIEKYGGK---SPVIVVMNKIDE-NPSYNIEQKK 172
Score = 35.7 bits (82), Expect = 0.024
Identities = 7/102 (6%), Positives = 29/102 (28%), Gaps = 27/102 (26%)
Query: 247 AHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLSIATAHAFLLV-----YST 301
+ ++L+ + + + + I + ++V +
Sbjct: 122 SSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV--------------IVVMNKIDENP 164
Query: 302 TCLESFQSVKCYFEEIREQRQDFQLLECSAKDNYNIKEVFRT 343
+ + + F I + S K+ ++ + ++
Sbjct: 165 SYNIEQKKINERFPAIENR-----FHRISCKNGDGVESIAKS 201
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 42.0 bits (99), Expect = 8e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTT---CLESFQSVKCYFEEIREQRQDFQEIPIV 205
G + + A R+L + + V + + +S++ E + E ++PIV
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV 139
Query: 206 VAGNKSDMTSHHRAVHLEDV 225
+ NK D+ A+ +E V
Sbjct: 140 IQVNKRDLP---DALPVEMV 156
Score = 34.7 bits (80), Expect = 0.026
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 51/162 (31%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRD-----FHVGAVTIKEIP-- 62
++V G GK+ LK +++ + + + L + D F + I E+
Sbjct: 14 NFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72
Query: 63 -----------------------------IVVAGNKSDMTSHHRAVHLEDVSEWLYCELP 93
+ VA + + A + ++ E L
Sbjct: 73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADS-APNRLRANAESMRNMRENLAEYGL 131
Query: 94 KLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWL 135
L ++PIV+ NK D+ A+ +E V +
Sbjct: 132 TLD----------DVPIVIQVNKRDLP---DALPVEMVRAVV 160
Score = 30.5 bits (69), Expect = 0.64
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 30 FLFNTYSDRYRSTVEDLYS--RDFHVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVSEW 87
F+ ++ +R R+ E + + + +T+ ++PIV+ NK D+ A+ +E V
Sbjct: 103 FVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP---DALPVEMVRAV 159
Query: 88 LYCELPKLRYVIQSS 102
+ + V+++
Sbjct: 160 V--DPEGKFPVLEAV 172
Score = 29.3 bits (66), Expect = 1.5
Identities = 18/127 (14%), Positives = 41/127 (32%), Gaps = 20/127 (15%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQFPAMRRLS 288
G + + A R+L + + V + + + +RE ++
Sbjct: 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAE-SMRNMRENLAEY--------G 130
Query: 289 IATAHAFLLVYSTTC-LESFQSVKCYFEEIREQ---RQDFQLLECSAKDNYNIKEVFRTF 344
+ +++ L V E +R F +LE A + + E T
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPV----EMVRAVVDPEGKFPVLEAVATEGKGVFE---TL 183
Query: 345 LTLSQIL 351
+S+++
Sbjct: 184 KEVSRLV 190
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 41.9 bits (98), Expect = 2e-04
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 149 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQEIPIVVA 207
DT G + +R LS FL+ +S SF V+ + E+R + PI++
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN---TPIILV 265
Query: 208 GNKSDM 213
G K D+
Sbjct: 266 GTKLDL 271
Score = 40.4 bits (94), Expect = 6e-04
Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 36/133 (27%)
Query: 229 DTCGDLQFPAMRRLSIATAHAFLLVYSTTCLESFQSVKCY-FEEIREQRQDFQFPAMRRL 287
DT G + +R LS FL+ +S SF V+ + E+R
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH------------- 255
Query: 288 SIATAHA----FLLV-------YSTTCLESFQSVKC---YFEEIREQRQD---FQLLECS 330
H +LV +E + K + + ++ + LECS
Sbjct: 256 -----HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 310
Query: 331 AKDNYNIKEVFRT 343
A +K VF
Sbjct: 311 ALTQRGLKTVFDE 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 38.2 bits (89), Expect = 0.002
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 34/157 (21%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
+ + ++I G Q GK+ +L ++ + E L + D+ VT+ + P G
Sbjct: 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFP----G 100
Query: 68 NKS----------DMTSHHRAV-----------HLEDVSEWLYCELPKLRYVIQSSSFGD 106
+ + + L +E+L L ++
Sbjct: 101 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG---- 156
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 143
I I++A NKS++ + A + + L E+ K+
Sbjct: 157 -IDILIACNKSELFT---ARPPSKIKDALESEIQKVI 189
Score = 30.9 bits (70), Expect = 0.43
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 162 LSIATAHAFLLVY---STTCLESFQSVKCYFEEI--REQRQDFQEIPIVVAGNKSDM 213
L L++ ST + + + +I + I I++A NKS++
Sbjct: 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.4 bits (87), Expect = 0.004
Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 44/162 (27%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV--- 64
+ + ++ +G GK+ + R L +YR T S +
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTG----QYRDTQT---SITDSSAIYKVNNNRGNSLT 57
Query: 65 ---VAGNKS--------------------DMTSHHRAVHLEDVSEWLYCELPKLRYVIQS 101
+ G++S D + R ++DV+E+LY L I S
Sbjct: 58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQR--EVKDVAEFLYQVL------IDS 109
Query: 102 SSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 143
+ + +++A NK D+ A + + + L EL LR
Sbjct: 110 MALKNSPSLLIACNKQDIAM---AKSAKLIQQQLEKELNTLR 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 37.0 bits (86), Expect = 0.005
Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 34/157 (21%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVVAG 67
+ + ++I G Q GK+ +L ++ + E L + D+ VT+ + P G
Sbjct: 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFP----G 64
Query: 68 NKS----------DMTSHHRAV-----------HLEDVSEWLYCELPKLRYVIQSSSFGD 106
+ + + L +E+L L ++
Sbjct: 65 HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG---- 120
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 143
I I++A NKS++ + A + + L E+ K+
Sbjct: 121 -IDILIACNKSELFT---ARPPSKIKDALESEIQKVI 153
Score = 30.1 bits (68), Expect = 0.91
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 172 LVY---STTCLESFQSVKCYFEEI--REQRQDFQEIPIVVAGNKSDM 213
L++ ST + + + +I + I I++A NKS++
Sbjct: 86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 32.2 bits (73), Expect = 0.16
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44
+ R++++G + GKS I K +F+ S +E
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKV-VFHKMSPNETLFLE 53
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 32.2 bits (74), Expect = 0.19
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 2 KPVMCDNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
+ + R LV++G GVG+S I L + +++ V
Sbjct: 11 RENLYFQGRKTLVLIGASGVGRSHIKNA-LLSQNPEKFVYPV 51
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 31.7 bits (73), Expect = 0.25
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTV 43
LV+LG GVG+ I L + DR+ +
Sbjct: 8 LVLLGAHGVGRRHIKNT-LITKHPDRFAYPI 37
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.1 bits (73), Expect = 0.25
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 7 DNERIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYS--RDFHVGAVTIKEIPIV 64
D + +++LG GVGKS N+ V + + + T+ I
Sbjct: 33 DMNSMTVLVLGKGGVGKSS-----TVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTIN 87
Query: 65 V 65
+
Sbjct: 88 I 88
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 31.5 bits (71), Expect = 0.34
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 7 DNERIRLVILGGQGVGKS----CILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEI 61
D + ++++G GVGKS I+ + + ++S T+ I
Sbjct: 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVS--ISPFQSEGPRPVMVSRSRAGFTLNII 92
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.5 bits (71), Expect = 0.38
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 10 RIRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVE 44
+L+++G G GKS + +F+ YS +
Sbjct: 3 GSKLLLMGRSGSGKSSMRS-IIFSNYSAFDTRRLG 36
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 31.0 bits (70), Expect = 0.58
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 170 FLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDM 213
++ S C + FEE+ +F+++P +V NK D+
Sbjct: 252 YIFDPSEHCGFPLEEQIHLFEEVHG---EFKDLPFLVVINKIDV 292
Score = 27.9 bits (62), Expect = 5.7
Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 30/136 (22%)
Query: 7 DNERIRLVILGGQGVGKSCILKRF-LFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIVV 65
D E +VI G VGKS +LK Y T +R +VG +
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFT-----TRGINVGQFEDGYFRYQI 218
Query: 66 A------------GNKSDMTS----HHRA---VHLEDVSEWLYCELPKLRYVIQSSSFGD 106
N+ + + + +++ D SE +C P +
Sbjct: 219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSE--HCGFPLEEQIHLFEEVHG 276
Query: 107 EI---PIVVAGNKSDM 119
E P +V NK D+
Sbjct: 277 EFKDLPFLVVINKIDV 292
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 31.1 bits (71), Expect = 0.71
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 2 KPVMCDNERIRLVILGG-QGVGKSCIL-----KRFLF 32
+ ++ +R+ LGG + VG+SC L R L
Sbjct: 175 RECTSKDQWVRVTALGGCKEVGRSCFLLSTPESRILI 211
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 30.6 bits (70), Expect = 0.88
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 13/82 (15%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
I G Q +G+ + KR + + + TV DL + + K+ P+ + G
Sbjct: 424 IYGAQTLGRDGVDKR--MDVIATAIKANLTVLDLPDLELSYAPPYSSA--KD-PVNMVGY 478
Query: 69 KSD--MTSHHRAVHLEDVSEWL 88
+ + V ++ +
Sbjct: 479 AASNIVDGFVDTVQWHEIDRIV 500
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 30.3 bits (69), Expect = 0.90
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 52 HVGAVTIKEIP-IVVAGNKSDMTSHHRAV-HLEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
H+ A+ I I I++ NK D+ +A + E + E++ + + P
Sbjct: 126 HLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV------------KGTIAENAP 173
Query: 110 IV 111
I+
Sbjct: 174 II 175
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 30.3 bits (69), Expect = 0.99
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 52 HVGAVTIKEIP-IVVAGNKSDMTSHHRAV-HLEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
H+ A+ I I++A NK ++ +A+ + + E++ + + P
Sbjct: 128 HLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFI------------EGTVAENAP 175
Query: 110 IV 111
I+
Sbjct: 176 II 177
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 29.5 bits (67), Expect = 1.1
Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 48/157 (30%)
Query: 11 IRLVILGGQGVGKSCILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIPIV---VAG 67
+ L ++G Q GK+ + +++ TV F++ +T + I + G
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV------GFNMRKITKGNVTIKLWDIGG 76
Query: 68 NKS-------------------DMTSHHRAVHLEDVSEWLYCEL--PKLRYVIQSSSFGD 106
D + +E L+ L P+L+
Sbjct: 77 QPRFRSMWERYCRGVSAIVYMVDAADQEK---IEASKNELHNLLDKPQLQ---------- 123
Query: 107 EIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCELPKLR 143
IP++V GNK D+ A+ +++ E + L ++
Sbjct: 124 GIPVLVLGNKRDLPG---ALDEKELIEKM--NLSAIQ 155
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 1.2
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
I G Q VGK I KR + + R TVE L + G+ K+ I A
Sbjct: 408 IFGAQAVGKDGIDKR--IDVMAVAQRAGMTVEQLQHLELSYAPPYGSA--KD-VINQAAF 462
Query: 69 KSD--MTSHHRAVHLEDVSE 86
+ + +H + +
Sbjct: 463 VASNIIKGDATPIHFDQIDN 482
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 2 KPVMCDNERIRLVILGG-QGVGKSCIL-----KRFLF 32
+ + IR+ LGG + VG+S +L L
Sbjct: 180 RKPEYKSRWIRITGLGGFREVGRSALLVQTDESFVLV 216
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase;
1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB:
1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A*
1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Length = 464
Score = 30.1 bits (67), Expect = 1.4
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 27 LKRFLFNTYSDRYRSTVEDLYSRDF-HVGAVTIKEIPIVVAGNKSDMTSHHRAVHLEDVS 85
L +L + + ++ ++ D I P G++ D H R L
Sbjct: 179 LISYLTAYNAPSLKEWIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDH 238
Query: 86 EWLYCELPKLRYVIQSSSFG 105
V Q SS G
Sbjct: 239 ASSMPNAESWPVVGQFSSVG 258
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger,
initiate translation, tRNA binding, mRNA bindin binding;
HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB:
3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A*
3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Length = 403
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 52 HVGAVTIKEIP-IVVAGNKSDMTSHHRAV-HLEDVSEWLYCELPKLRYVIQSSSFGDEIP 109
H A+ I + +++ NK D+ S A+ + ++ ++ + +P
Sbjct: 120 HFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK------------GTWAENVP 167
Query: 110 IV 111
I+
Sbjct: 168 II 169
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 30.0 bits (68), Expect = 1.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 3 PVMCDNERIRLVILGG-QGVGKSCIL-----KRFLF 32
DN+ RL +GG + VG+SC+ R L
Sbjct: 172 KPKYDNDWARLTAMGGFREVGRSCLYLQTPNSRVLL 207
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 27.9 bits (63), Expect = 3.1
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 11 IRLVILGGQGVGKSCILKRFLFN 33
+R++++G GK+ IL +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLG 23
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.9 bits (63), Expect = 3.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
+R++ILG G GK+ IL R
Sbjct: 5 TREMRILILGLDGAGKTTILYRLQVG 30
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 27.9 bits (63), Expect = 3.6
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
++ +R+++LG GK+ +LK+
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASE 39
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 28.6 bits (65), Expect = 3.6
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
+LGGQ +G+ + KR + + + ++ DL D +V + PI A
Sbjct: 423 LLGGQVIGEEGVDKR--IDVIAMALFNKMSIHDLEDVDLSYAPPYNSV--WD-PIQQAAR 477
Query: 69 K 69
+
Sbjct: 478 R 478
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 28.0 bits (63), Expect = 3.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 IRLVILGGQGVGKSCILKRFLFN 33
+RL++LG GK+ ILK+F
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGE 41
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
+ +IR+++LG GK+ IL R
Sbjct: 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.6 bits (62), Expect = 4.5
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
++ + ++ LG GK+ I+ + +
Sbjct: 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 27.6 bits (62), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
N+ +R++ILG G GK+ IL R
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIG 41
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 28.2 bits (64), Expect = 4.8
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 11/61 (18%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
IL VGK KR + S + TV++L + K+ I + G
Sbjct: 381 ILRAAAVGKEGADKR--IDVLSMAMMNQLTVDELTEFEVAYAPPYSHP--KD-LINMIGY 435
Query: 69 K 69
K
Sbjct: 436 K 436
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 28.3 bits (64), Expect = 4.9
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 11/61 (18%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
ILG Q + + + +S + T+E L D H I +A
Sbjct: 432 ILGAQMAAREDVSMG--IHMFSLAIQEGVTIEKLALTDIFFLPHFNKP--YN-YITMAAL 486
Query: 69 K 69
Sbjct: 487 G 487
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 27.8 bits (62), Expect = 5.0
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 164 IATAHAFLLVYSTTCLESFQSVKCYFEEIREQRQDFQEIPIVVAGNKSDMTS 215
I F++ S C + + + F IV+ NK D +
Sbjct: 108 INGVILFIIDISEQCGLTIKEQ---INLFYSIKSVFSNKSIVIGFNKIDKCN 156
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.6 bits (62), Expect = 5.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
++ +++I+G GK+ IL +F N
Sbjct: 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 27.8 bits (63), Expect = 5.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF 51
ILGG + + N S + ++T++DL D
Sbjct: 387 ILGGALSSMHDVSQS--ANVLSVCIQNKNTIDDLAMVDM 423
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 28.0 bits (61), Expect = 5.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 211 SDMTSHHRAVHLEDVDILDTCGDL 234
SD S + + DIL GD
Sbjct: 66 SDTRSRTDGIQMPYGDILLHTGDF 89
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 27.8 bits (63), Expect = 6.1
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF----HVGAVTIKEIPIVVAGN 68
+LG Q K+ L++ NT + + T+ DL +D+ + + + + G
Sbjct: 382 VLGAQLCSKNNCLEK--INTLALSIQTGQTLTDLLQKDYFYQPSLTNI--YD-ITNLMGA 436
Query: 69 K 69
Sbjct: 437 S 437
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 27.8 bits (63), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 15 ILGGQGVGKSCILKRFLFNTYSD--RYRSTVEDLYSRDF 51
ILG Q + K+ + N S + + T+EDL DF
Sbjct: 386 ILGAQLMSKADLTAN--INAISLAIQAKMTIEDLAYADF 422
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 27.7 bits (61), Expect = 7.0
Identities = 26/144 (18%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 13 LVILGGQGVGKSCILKRFLFNTYSDRYRSTVE---DLYSRDFH-VGAVTIKEIPIVVAGN 68
++++G + GKS I K +F+ +E + F + + + E+P +
Sbjct: 2 VLLMGVRRCGKSSICK-VVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYF 60
Query: 69 KSDMTSHH------RAVHLEDVSEWLYCELPKLRYVIQSS-SFGDEIPIVVAGNKSDMTS 121
+ S V++ D + + L +I+ + I I V +K D S
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 122 -HHRAVHLEDVSEWLYCELPKLRY 144
+ D+ + EL +L
Sbjct: 121 EDFKVDAQRDIMQRTGEELLELGL 144
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.3 bits (61), Expect = 7.6
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 11 IRLVILGGQGVGKSCILKRFLFN 33
+R++++G GK+ IL +
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLG 52
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 27.3 bits (60), Expect = 8.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 7 DNERIRLVILGGQGVGKS----CILKRFLFNTYSDRYRSTVEDLYSRDFHVGAVTIKEIP 62
N ++R+V++G G GKS IL R +F++ + T + + + KE
Sbjct: 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSIT------KKCEKRSSSWKETE 79
Query: 63 IVV 65
+VV
Sbjct: 80 LVV 82
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 26.8 bits (60), Expect = 8.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 8 NERIRLVILGGQGVGKSCILKRFLFN 33
++ +++I+G GK+ IL +F N
Sbjct: 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 27.2 bits (60), Expect = 9.7
Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 79 VHLEDVSEWLYCELPKLRYVIQSSSFGDEIPIVVAGNKSDMTSHHRAVHLEDVSEWLYCE 138
V + D+ ++ LP L + ++ +++ GNK+D+ ++V + V W+
Sbjct: 74 VKIVDIFDFNGSWLPGLHRFVGNN------KVLLVGNKADLIP--KSVKHDKVKHWMRYS 125
Query: 139 LPKL 142
+L
Sbjct: 126 AKQL 129
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.405
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,817,761
Number of extensions: 343890
Number of successful extensions: 1711
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 503
Length of query: 373
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 278
Effective length of database: 4,049,298
Effective search space: 1125704844
Effective search space used: 1125704844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)