BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16676
(461 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 45/165 (27%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS ISF+IP IM+F L +++EA Q +++
Sbjct: 178 AIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDR------------------------ 213
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
R + + REHKA +TLGIIMG F LCWLPFFL ++
Sbjct: 214 ------------------ASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF 255
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
D PD++ F W+GY NS +NP+IY + DFR+AFK L
Sbjct: 256 NRDL--VPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 297
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYF 162
R + + REHKA +TLGIIMG F LCWLPFFL ++ D PD++ F W+GY
Sbjct: 217 RKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL--VPDWLFVAFNWLGYA 274
Query: 163 NSTLNPLIYAYFNRDFREAFKNTL 186
NS +NP+IY + DFR+AFK L
Sbjct: 275 NSAMNPIIYCR-SPDFRKAFKRLL 297
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 81/165 (49%), Gaps = 43/165 (26%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS ISF+IP IM+F L +++EA Q +++
Sbjct: 178 AIASSIISFYIPLLIMIFVALRVYREAKEQIRKID------------------------- 212
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
++ K ++ M REHKA +TLGIIMG F LCWLPFFL ++
Sbjct: 213 --------------RASKRKTSRVMLM-REHKALKTLGIIMGVFTLCWLPFFLVNIVNVF 257
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
D PD++ F W+GY NS +NP+IY + DFR+AFK L
Sbjct: 258 NRDL--VPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 299
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 106 IKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNST 165
+ + REHKA +TLGIIMG F LCWLPFFL ++ D PD++ F W+GY NS
Sbjct: 222 VMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL--VPDWLFVAFNWLGYANSA 279
Query: 166 LNPLIYAYFNRDFREAFKNTL 186
+NP+IY + DFR+AFK L
Sbjct: 280 MNPIIYCR-SPDFRKAFKRLL 299
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 32/169 (18%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGN-HGRDASYSNSNG 299
AI SS +SF++P IMVF Y +F+EA RQ +++ G H ++ S +G
Sbjct: 349 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSE-------GRFHVQNLSQVEQDG 401
Query: 300 DLAVG---AGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYV 356
G + K L +EHKA +TLGIIMGTF LCWLPFF+ +
Sbjct: 402 RTGHGLRRSSKFCL------------------KEHKALKTLGIIMGTFTLCWLPFFIVNI 443
Query: 357 ITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ + + Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 444 VHVIQDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 489
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
+EHKA +TLGIIMGTF LCWLPFF+ ++ + + Y+ + WIGY NS NPL
Sbjct: 416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPL 473
Query: 170 IYAYFNRDFREAFKNTL 186
IY + DFR AF+ L
Sbjct: 474 IYCR-SPDFRIAFQELL 489
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ +++ S G
Sbjct: 201 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI--------------------DKSEGR 240
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
V +D + + +K EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 241 FHVQNLSQVEQDGRTGHGLRRSSKFCLK-EHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 299
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 300 QDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 341
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
+EHKA +TLGIIMGTF LCWLPFF+ ++ + + Y+ + WIGY NS NPL
Sbjct: 268 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPL 325
Query: 170 IYAYFNRDFREAFKNTL 186
IY + DFR AF+ L
Sbjct: 326 IYCR-SPDFRIAFQELL 341
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 82/165 (49%), Gaps = 24/165 (14%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ +++ S G
Sbjct: 200 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI--------------------DKSEGR 239
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
V +D + + +K EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 240 FHVQNLSQVEQDGRTGHGLRRSSKFCLK-EHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 298
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 299 QDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 340
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
+EHKA +TLGIIMGTF LCWLPFF+ ++ + + Y+ + WIGY NS NPL
Sbjct: 267 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPL 324
Query: 170 IYAYFNRDFREAFKNTL 186
IY + DFR AF+ L
Sbjct: 325 IYCR-SPDFRIAFQELL 340
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 32/169 (18%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGN-HGRDASYSNSNG 299
AI SS +SF++P IMVF Y +F+EA RQ +++ G H ++ S +G
Sbjct: 177 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSE-------GRFHVQNLSQVEQDG 229
Query: 300 DLAVG---AGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYV 356
G + K L +EHKA +TLGIIMGTF LCWLPFF+ +
Sbjct: 230 RTGHGLRRSSKFCL------------------KEHKALKTLGIIMGTFTLCWLPFFIVNI 271
Query: 357 ITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ + + Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 272 VHVIQDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 317
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
+EHKA +TLGIIMGTF LCWLPFF+ ++ + + Y+ + WIGY NS NPL
Sbjct: 244 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPL 301
Query: 170 IYAYFNRDFREAFKNTL 186
IY + DFR AF+ L
Sbjct: 302 IYCR-SPDFRIAFQELL 317
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 14/104 (13%)
Query: 95 HHSTPTKDRNIIK------------MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLC 142
++ TP + + +I M RE KAA+ LG IM FILCW+P+F+++++ + C
Sbjct: 340 YNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC 399
Query: 143 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+ C+ +++ W+GY NSTLNPLIY N +F++ FK L
Sbjct: 400 KNCCN--EHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 14/104 (13%)
Query: 314 HHSTPTKDRNIIK------------MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
++ TP + + +I M RE KAA+ LG IM FILCW+P+F+++++ + C
Sbjct: 340 YNQTPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC 399
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ C+ +++ W+GY NSTLNPLIY N +F++ FK L
Sbjct: 400 KNCCN--EHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 77/165 (46%), Gaps = 52/165 (31%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ +++
Sbjct: 172 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKI-------------------------- 205
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
D+ +K EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 206 --------------------DKFCLK---EHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 242
Query: 361 CGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 243 QDNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 284
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
+EHKA +TLGIIMGTF LCWLPFF+ ++ + + Y+ + WIGY NS NPL
Sbjct: 211 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYI--LLNWIGYVNSGFNPL 268
Query: 170 IYAYFNRDFREAFKNTL 186
IY + DFR AF+ L
Sbjct: 269 IYCR-SPDFRIAFQELL 284
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
RE KA + + I++G FI+CWLPFFL +V+ + C C + + W+GY NS LNP+
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHC-QTCHVSPELYSATTWLGYVNSALNPV 453
Query: 170 IYAYFNRDFREAFKNTLQCA 189
IY FN +FR+AF L C
Sbjct: 454 IYTTFNIEFRKAFLKILSCG 473
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 329 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 388
RE KA + + I++G FI+CWLPFFL +V+ + C C + + W+GY NS LNP+
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHC-QTCHVSPELYSATTWLGYVNSALNPV 453
Query: 389 IYAYFNRDFREAFKNTLQCA 408
IY FN +FR+AF L C
Sbjct: 454 IYTTFNIEFRKAFLKILSCG 473
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 95 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 142
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 375 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 434
Query: 143 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 435 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 475
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 314 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 375 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 434
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 435 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 475
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ L R Y ++ G
Sbjct: 207 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL------RLKIYKDTEGY 260
Query: 301 LAVGAGKL 308
+G G L
Sbjct: 261 YTIGIGHL 268
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 95 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 142
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 435
Query: 143 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 436 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 314 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 435
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 436 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ L R Y ++ G
Sbjct: 208 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL------RLKIYKDTEGY 261
Query: 301 LAVGAGKL 308
+G G L
Sbjct: 262 YTIGIGHL 269
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 95 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 142
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 435
Query: 143 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 436 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 314 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 435
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 436 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 476
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ L R Y ++ G
Sbjct: 208 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL------RLKIYKDTEGY 261
Query: 301 LAVGAGKL 308
+G G L
Sbjct: 262 YTIGIGHL 269
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 95 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 142
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 344 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 403
Query: 143 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 404 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 444
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 57/104 (54%), Gaps = 15/104 (14%)
Query: 314 HHSTPTKDRNIIKMKR------------EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361
++ TP + + +I R EHKA +TLGIIMGTF LCWLPFF+ ++ +
Sbjct: 344 YNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 403
Query: 362 GDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+ Y+ + WIGY NS NPLIY + DFR AF+ L
Sbjct: 404 DNLIRKEVYI--LLNWIGYVNSGFNPLIYCR-SPDFRIAFQELL 444
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
AI SS +SF++P IMVF Y +F+EA RQ L R Y ++ G
Sbjct: 176 AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGL------RLKIYKDTEGY 229
Query: 301 LAVGAGKL 308
+G G L
Sbjct: 230 YTIGIGHL 237
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 39/156 (25%)
Query: 251 IPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTL 310
+P +M+ YL IF A RQ KQ+ S Q L G R
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMES-----QPLPGERARS------------------- 223
Query: 311 EDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDY 370
+++E AA++L II+G F LCWLP + T C D P +
Sbjct: 224 ---------------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW 268
Query: 371 VVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406
++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 269 LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 86 AGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDA 145
A + L+ +R +++E AA++L II+G F LCWLP + T C D
Sbjct: 203 AARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC 262
Query: 146 CDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187
P +++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 263 SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 39/156 (25%)
Query: 251 IPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTL 310
+P +M+ YL IF A RQ KQ+ S Q L G R
Sbjct: 188 VPLLLMLGVYLRIFLAARRQLKQMES-----QPLPGERARS------------------- 223
Query: 311 EDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDY 370
+++E AA++L II+G F LCWLP + T C D P +
Sbjct: 224 ---------------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLW 268
Query: 371 VVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406
++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 269 LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 86 AGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDA 145
A + L+ +R +++E AA++L II+G F LCWLP + T C D
Sbjct: 203 AARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC 262
Query: 146 CDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187
P +++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 263 SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 66/156 (42%), Gaps = 39/156 (25%)
Query: 251 IPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTL 310
+P +M+ YL IF A RQ KQ+ S Q L G R
Sbjct: 188 VPLLLMLGVYLRIFAAARRQLKQMES-----QPLPGERARS------------------- 223
Query: 311 EDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDY 370
+++E AA++ II G F LCWLP + T C D P +
Sbjct: 224 ---------------TLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLW 268
Query: 371 VVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406
++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 269 LMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIR 304
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 85 GAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD 144
A + L+ +R +++E AA++ II G F LCWLP + T C D
Sbjct: 202 AAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPD 261
Query: 145 ACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187
P +++ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 262 CSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIR 304
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 93 DAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYV 152
DA+ ST +++E AA++L II+G F LCWLP + T C D P ++
Sbjct: 381 DAYRST---------LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL 431
Query: 153 VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187
+ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 432 MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 466
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 312 DAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYV 371
DA+ ST +++E AA++L II+G F LCWLP + T C D P ++
Sbjct: 381 DAYRST---------LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWL 431
Query: 372 VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406
+ + + + NS +NP IYAY R+FR+ F+ ++
Sbjct: 432 MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 466
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLN 167
+++E AA++L II+G F LCWLP + T C D P +++ + + + NS +N
Sbjct: 346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVN 405
Query: 168 PLIYAYFNRDFREAFKNTLQ 187
P IYAY R+FR+ F+ ++
Sbjct: 406 PFIYAYRIREFRQTFRKIIR 425
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 327 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLN 386
+++E AA++L II+G F LCWLP + T C D P +++ + + + NS +N
Sbjct: 346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVN 405
Query: 387 PLIYAYFNRDFREAFKNTLQ 406
P IYAY R+FR+ F+ ++
Sbjct: 406 PFIYAYRIREFRQTFRKIIR 425
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 95 HHSTPTKDRNIIK----------MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD 144
++ TP + + +I + +E KAA+TL I+ FI+ W P+ + ++ + C D
Sbjct: 343 YNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFC-D 401
Query: 145 ACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 188
+C P + +W+ Y NST+NP+ YA N+ FR FK L C
Sbjct: 402 SC-IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLLC 444
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 314 HHSTPTKDRNIIK----------MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD 363
++ TP + + +I + +E KAA+TL I+ FI+ W P+ + ++ + C D
Sbjct: 343 YNQTPNRAKRVITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFC-D 401
Query: 364 ACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 407
+C P + +W+ Y NST+NP+ YA N+ FR FK L C
Sbjct: 402 SC-IPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLLC 444
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 110 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169
RE K RT+ I+ FI+ W P+ + +I + C P+ V I +W+ Y NST+NP
Sbjct: 382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI--PNTVWTIGYWLCYINSTINPA 439
Query: 170 IYAYFNRDFREAFKNTLQC 188
YA N F++ FK+ L C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 329 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 388
RE K RT+ I+ FI+ W P+ + +I + C P+ V I +W+ Y NST+NP
Sbjct: 382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCI--PNTVWTIGYWLCYINSTINPA 439
Query: 389 IYAYFNRDFREAFKNTLQC 407
YA N F++ FK+ L C
Sbjct: 440 CYALCNATFKKTFKHLLMC 458
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 22/94 (23%)
Query: 108 MKREHKAARTLGIIMGTFILCWLPFFLWY---------VITSLC------GDACDCPDYV 152
M ++H+A R + ++ F+LCWLP+ L VI C G A D +
Sbjct: 206 MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI- 264
Query: 153 VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
+G+ +S LNP+IYA+ ++FR F L
Sbjct: 265 ------LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 22/94 (23%)
Query: 327 MKREHKAARTLGIIMGTFILCWLPFFLWY---------VITSLC------GDACDCPDYV 371
M ++H+A R + ++ F+LCWLP+ L VI C G A D +
Sbjct: 206 MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI- 264
Query: 372 VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
+G+ +S LNP+IYA+ ++FR F L
Sbjct: 265 ------LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 116 RTLGIIMGTFILCWLPFFLWYVITSLCG-DACDCPDYVVAIFFWIGYFNSTLNPLIYAYF 174
+T+ I++ FI CW P F+ ++ C CD + F + NS NP+IY
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDIL-FRAEYFLVLAVLNSGTNPIIYTLT 479
Query: 175 NRDFREAF 182
N++ R AF
Sbjct: 480 NKEMRRAF 487
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 335 RTLGIIMGTFILCWLPFFLWYVITSLCG-DACDCPDYVVAIFFWIGYFNSTLNPLIYAYF 393
+T+ I++ FI CW P F+ ++ C CD + F + NS NP+IY
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDIL-FRAEYFLVLAVLNSGTNPIIYTLT 479
Query: 394 NRDFREAF 401
N++ R AF
Sbjct: 480 NKEMRRAF 487
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 95 HHSTPTKDRNII-------------KMKREHKAARTLGIIMGTFILCWLPFFLW-----Y 136
++ TP + + +I K ++ KA +T I++ F CWLP+++ +
Sbjct: 379 YNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSF 438
Query: 137 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSL 193
++ + C+ + V ++I + +F+ LNP++YA+ FK + Q A S+
Sbjct: 439 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLG----AKFKTSAQHALTSV 494
Query: 194 CR 195
R
Sbjct: 495 SR 496
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 25/122 (20%)
Query: 314 HHSTPTKDRNII-------------KMKREHKAARTLGIIMGTFILCWLPFFLW-----Y 355
++ TP + + +I K ++ KA +T I++ F CWLP+++ +
Sbjct: 379 YNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSF 438
Query: 356 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCSL 412
++ + C+ + V ++I + +F+ LNP++YA+ FK + Q A S+
Sbjct: 439 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLG----AKFKTSAQHALTSV 494
Query: 413 CR 414
R
Sbjct: 495 SR 496
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 95 HHSTPTKDRNII-------------KMKREHKAARTLGIIMGTFILCWLPFFLW-----Y 136
++ TP + + +I K ++ KA +T I++ F CWLP+++ +
Sbjct: 379 YNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSF 438
Query: 137 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
++ + C+ + V ++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 439 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 314 HHSTPTKDRNII-------------KMKREHKAARTLGIIMGTFILCWLPFFLW-----Y 355
++ TP + + +I K ++ KA +T I++ F CWLP+++ +
Sbjct: 379 YNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSF 438
Query: 356 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
++ + C+ + V ++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 439 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 124 TFILCWLPFFLWYVITSLCGDAC--DCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 181
TF +CWLPF +++++ + D V W+ ++ NP+IY N FR
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 182 FKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKHHID 231
FK+ +C C D + L+++ S RY SVY + L+ I
Sbjct: 316 FKHAFRC--CPFISA--GDYEGLEMK--STRYLQTQGSVYKVSRLETTIS 359
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 343 TFILCWLPFFLWYVITSLCGDAC--DCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 400
TF +CWLPF +++++ + D V W+ ++ NP+IY N FR
Sbjct: 256 TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLG 315
Query: 401 FKNTLQCAFCSLCRREPSDLDELDIRRASLRYDDRTKSVYSDTYLKHHID 450
FK+ +C C D + L+++ S RY SVY + L+ I
Sbjct: 316 FKHAFRC--CPFISA--GDYEGLEMK--STRYLQTQGSVYKVSRLETTIS 359
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 128 CWLPFFLWYVITSLCGDACDCPDYVVAIFFWI--GYFNSTLNPLIYAYFNRDFREAFKNT 185
CW P ++ ++ +L P V A+ I GY NS+LNP++YA+ + +F+ F+
Sbjct: 392 CWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFR-- 449
Query: 186 LQCAFCSLCRREP 198
Q R+EP
Sbjct: 450 -QLCRTPCGRQEP 461
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 347 CWLPFFLWYVITSLCGDACDCPDYVVAIFFWI--GYFNSTLNPLIYAYFNRDFREAFKNT 404
CW P ++ ++ +L P V A+ I GY NS+LNP++YA+ + +F+ F+
Sbjct: 392 CWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFR-- 449
Query: 405 LQCAFCSLCRREP 417
Q R+EP
Sbjct: 450 -QLCRTPCGRQEP 461
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 165
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 166 LNPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 384
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 385 LNPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 165
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 300
Query: 166 LNPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 301 YNPVIYIMMNKQFRNCMVTTLCCG 324
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 384
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 300
Query: 385 LNPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 301 YNPVIYIMMNKQFRNCMVTTLCCG 324
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 165
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 166 LNPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 384
K E + R + I++ F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 385 LNPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 95 HHSTPTKDRNIIKMKR-------------EHKAARTLGIIMGTFILCWLPFFLW-----Y 136
++ TP + + +I R + KA + I++ F CWLP+++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYSGSGHQKRKALKPTVILILAFFACWLPYYIGISIDSF 435
Query: 137 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186
++ + C+ + V ++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 436 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 488
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 21/113 (18%)
Query: 314 HHSTPTKDRNIIKMKR-------------EHKAARTLGIIMGTFILCWLPFFLW-----Y 355
++ TP + + +I R + KA + I++ F CWLP+++ +
Sbjct: 376 YNQTPNRAKRVITTFRTGTWDAYSGSGHQKRKALKPTVILILAFFACWLPYYIGISIDSF 435
Query: 356 VITSLCGDACDCPDYV---VAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405
++ + C+ + V ++I + +F+ LNP++YA+ F+ + ++ L
Sbjct: 436 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 488
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 101 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFW-- 158
KDRN+ ++ R FI+CW P ++ +I +L P+ W
Sbjct: 374 KDRNLRRITRMVLVVVA------VFIVCWTPIHIYVIIKALI----TIPETTFQTVSWHF 423
Query: 159 ---IGYFNSTLNPLIYAYFNRDFREAFK 183
+GY NS LNP++YA+ + +F+ F+
Sbjct: 424 CIALGYTNSCLNPVLYAFLDENFKRCFR 451
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFW-- 377
KDRN+ ++ R FI+CW P ++ +I +L P+ W
Sbjct: 374 KDRNLRRITRMVLVVVA------VFIVCWTPIHIYVIIKALI----TIPETTFQTVSWHF 423
Query: 378 ---IGYFNSTLNPLIYAYFNRDFREAFK 402
+GY NS LNP++YA+ + +F+ F+
Sbjct: 424 CIALGYTNSCLNPVLYAFLDENFKRCFR 451
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 101 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWI- 159
KDRN+ ++ R F++CW P ++ ++ +L G + + +F I
Sbjct: 387 KDRNLRRITRLVLVVVA------VFVVCWTPIHIFILVEAL-GSTSHSTAALSSYYFCIA 439
Query: 160 -GYFNSTLNPLIYAYFNRDFREAFKN 184
GY NS+LNP++YA+ + +F+ F++
Sbjct: 440 LGYTNSSLNPILYAFLDENFKRCFRD 465
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWI- 378
KDRN+ ++ R F++CW P ++ ++ +L G + + +F I
Sbjct: 387 KDRNLRRITRLVLVVVA------VFVVCWTPIHIFILVEAL-GSTSHSTAALSSYYFCIA 439
Query: 379 -GYFNSTLNPLIYAYFNRDFREAFKN 403
GY NS+LNP++YA+ + +F+ F++
Sbjct: 440 LGYTNSSLNPILYAFLDENFKRCFRD 465
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 165
K E + R + I + F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 166 LNPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYV-VAIFFWIGYFNST 384
K E + R + I + F++CWLP+ +Y+ T +C P ++ + FF ++
Sbjct: 246 KAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTH--QGSCFGPIFMTIPAFF--AKTSAV 301
Query: 385 LNPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 302 YNPVIYIMMNKQFRNCMVTTLCCG 325
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 166
K E + R + I++ F++CWLP+ +Y+ T D + A F ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 302
Query: 167 NPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 303 NPVIYIMMNKQFRNCMVTTLCCG 325
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 385
K E + R + I++ F++CWLP+ +Y+ T D + A F ++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 302
Query: 386 NPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 303 NPVIYIMMNKQFRNCMVTTLCCG 325
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 109 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 166
K E + R + I++ F++CWLP+ +Y+ T D + A F ++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 301
Query: 167 NPLIYAYFNRDFREAFKNTLQCA 189
NP+IY N+ FR TL C
Sbjct: 302 NPVIYIMMNKQFRNCMVTTLCCG 324
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 328 KREHKAARTLGIIMGTFILCWLPF--FLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTL 385
K E + R + I++ F++CWLP+ +Y+ T D + A F ++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 301
Query: 386 NPLIYAYFNRDFREAFKNTLQCA 408
NP+IY N+ FR TL C
Sbjct: 302 NPVIYIMMNKQFRNCMVTTLCCG 324
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 121 IMGTFILCWLPFFLWYVITSLCGDA------CDCPDYVVAIFFWIGYFNSTLNPLIYAYF 174
++ F++CWLP+ + ++ D D Y + + Y +S +NP++Y
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 175 NRDFREAFKNTLQC 188
+ +FR+ F +TL C
Sbjct: 474 SANFRQVFLSTLAC 487
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 340 IMGTFILCWLPFFLWYVITSLCGDA------CDCPDYVVAIFFWIGYFNSTLNPLIYAYF 393
++ F++CWLP+ + ++ D D Y + + Y +S +NP++Y
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 394 NRDFREAFKNTLQC 407
+ +FR+ F +TL C
Sbjct: 474 SANFRQVFLSTLAC 487
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 128 CWLPFFLWYVITSLCGDACDCPDYVVAIFFW---IGYFNSTLNPLIYAYFNRDFREAFKN 184
CW P ++ + L + VAI + +GY NS LNP++YA+ + +F+ F+
Sbjct: 349 CWTPVQVFVLAQGLGVQPSS--ETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 347 CWLPFFLWYVITSLCGDACDCPDYVVAIFFW---IGYFNSTLNPLIYAYFNRDFREAFKN 403
CW P ++ + L + VAI + +GY NS LNP++YA+ + +F+ F+
Sbjct: 349 CWTPVQVFVLAQGLGVQPSS--ETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 162 FNSTLNPLIYAYFNRDFREAFKNTLQCA 189
NST+NP+IYA ++D R AF++ A
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRSMFPSA 39
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 381 FNSTLNPLIYAYFNRDFREAFKNTLQCA 408
NST+NP+IYA ++D R AF++ A
Sbjct: 12 LNSTVNPIIYALRSKDLRHAFRSMFPSA 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,510,168
Number of Sequences: 62578
Number of extensions: 606369
Number of successful extensions: 1522
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 113
length of query: 461
length of database: 14,973,337
effective HSP length: 102
effective length of query: 359
effective length of database: 8,590,381
effective search space: 3083946779
effective search space used: 3083946779
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)