Query psy16676
Match_columns 461
No_of_seqs 487 out of 4247
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 19:08:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.9 3.8E-22 8.2E-27 186.1 9.0 128 238-408 207-336 (423)
2 PHA03234 DNA packaging protein 99.8 2.6E-20 5.7E-25 180.2 12.7 108 245-407 202-316 (338)
3 PHA03235 DNA packaging protein 99.8 8.3E-20 1.8E-24 180.7 13.4 114 239-407 203-323 (409)
4 KOG4220|consensus 99.8 1.4E-19 3E-24 168.6 11.0 81 328-410 410-490 (503)
5 PHA02834 chemokine receptor-li 99.8 6.7E-19 1.5E-23 170.2 10.1 113 240-407 189-309 (323)
6 PHA02638 CC chemokine receptor 99.7 2.1E-17 4.6E-22 164.3 13.4 114 239-407 272-397 (417)
7 KOG4220|consensus 99.7 6.4E-18 1.4E-22 157.6 7.7 82 108-191 409-490 (503)
8 PHA03087 G protein-coupled che 99.6 2.6E-15 5.7E-20 146.3 13.4 114 240-407 203-323 (335)
9 PHA03234 DNA packaging protein 99.6 8.4E-16 1.8E-20 148.8 8.5 78 111-188 232-316 (338)
10 KOG4219|consensus 99.6 1.7E-15 3.8E-20 141.8 7.5 92 102-193 247-340 (423)
11 PHA03235 DNA packaging protein 99.5 1.5E-14 3.3E-19 143.3 8.8 78 112-189 240-324 (409)
12 PF00001 7tm_1: 7 transmembran 99.5 6.8E-13 1.5E-17 123.3 18.8 113 237-390 145-257 (257)
13 PHA02834 chemokine receptor-li 99.5 1.6E-14 3.4E-19 139.8 4.9 77 112-188 225-309 (323)
14 PHA02638 CC chemokine receptor 99.4 2.4E-13 5.2E-18 135.4 8.1 80 111-190 308-399 (417)
15 PHA03087 G protein-coupled che 99.2 4.1E-11 8.9E-16 116.8 9.0 78 111-188 239-323 (335)
16 PF00001 7tm_1: 7 transmembran 99.1 6.1E-10 1.3E-14 103.3 9.7 69 103-171 189-257 (257)
17 KOG2087|consensus 98.9 3.8E-11 8.1E-16 111.8 -4.1 129 225-406 177-305 (363)
18 PF10324 7TM_GPCR_Srw: Serpent 98.9 1.5E-08 3.2E-13 98.1 12.3 123 240-407 192-317 (318)
19 PF05296 TAS2R: Mammalian tast 98.4 6.9E-06 1.5E-10 78.4 15.3 126 237-408 177-302 (303)
20 PF10324 7TM_GPCR_Srw: Serpent 98.1 7.4E-06 1.6E-10 79.2 7.4 81 109-189 235-318 (318)
21 PF10320 7TM_GPCR_Srsx: Serpen 98.0 1.5E-05 3.3E-10 74.3 8.3 78 328-405 180-257 (257)
22 PF10323 7TM_GPCR_Srv: Serpent 98.0 0.00016 3.5E-09 68.5 14.3 115 246-407 169-283 (283)
23 PF10321 7TM_GPCR_Srt: Serpent 97.6 0.00025 5.5E-09 67.5 8.9 113 240-407 195-307 (313)
24 PF10323 7TM_GPCR_Srv: Serpent 97.5 0.00074 1.6E-08 63.9 10.4 81 106-188 203-283 (283)
25 PF10320 7TM_GPCR_Srsx: Serpen 97.3 0.00026 5.5E-09 66.1 4.2 79 108-186 179-257 (257)
26 PF10327 7TM_GPCR_Sri: Serpent 97.1 0.051 1.1E-06 52.0 18.4 111 239-400 192-302 (303)
27 PF05462 Dicty_CAR: Slime mold 97.1 0.024 5.1E-07 53.9 15.2 67 337-407 204-270 (303)
28 KOG2087|consensus 96.9 2.1E-05 4.6E-10 73.9 -6.5 74 113-187 232-305 (363)
29 PF10328 7TM_GPCR_Srx: Serpent 96.4 0.055 1.2E-06 51.0 12.4 111 246-405 163-273 (274)
30 PF10317 7TM_GPCR_Srd: Serpent 96.3 0.064 1.4E-06 51.1 12.1 74 327-403 219-292 (292)
31 PF05296 TAS2R: Mammalian tast 96.1 0.036 7.7E-07 53.0 9.4 77 108-189 226-302 (303)
32 PF02101 Ocular_alb: Ocular al 95.9 0.099 2.2E-06 50.1 10.9 27 332-358 241-267 (405)
33 PF11970 Git3_C: G protein-cou 95.8 0.038 8.3E-07 40.5 6.4 69 108-177 4-73 (76)
34 PF10318 7TM_GPCR_Srh: Serpent 95.3 0.31 6.7E-06 46.6 12.8 78 326-407 224-302 (302)
35 PF10326 7TM_GPCR_Str: Serpent 94.3 0.014 3E-07 56.0 0.4 117 234-402 190-307 (307)
36 PF10321 7TM_GPCR_Srt: Serpent 94.1 0.042 9.1E-07 52.5 3.2 73 108-188 235-307 (313)
37 PF11970 Git3_C: G protein-cou 93.7 0.33 7E-06 35.6 6.6 68 327-395 4-72 (76)
38 PF03402 V1R: Vomeronasal orga 93.6 0.098 2.1E-06 48.5 4.5 110 247-401 154-263 (265)
39 PF10328 7TM_GPCR_Srx: Serpent 92.7 0.5 1.1E-05 44.4 8.0 76 104-186 198-273 (274)
40 KOG4193|consensus 92.4 1.8 3.9E-05 45.3 12.2 67 332-406 514-580 (610)
41 PF03125 Sre: C. elegans Sre G 92.3 7.1 0.00015 38.4 15.9 42 369-410 283-324 (365)
42 PF05462 Dicty_CAR: Slime mold 92.0 1.5 3.3E-05 41.7 10.3 68 118-189 204-271 (303)
43 KOG4564|consensus 91.0 0.91 2E-05 45.5 7.9 70 329-406 348-418 (473)
44 PF02101 Ocular_alb: Ocular al 90.3 1.4 3.1E-05 42.4 8.2 24 114-137 242-265 (405)
45 PF10327 7TM_GPCR_Sri: Serpent 89.9 0.9 1.9E-05 43.4 6.7 72 107-181 231-302 (303)
46 PF10317 7TM_GPCR_Srd: Serpent 89.5 3.1 6.7E-05 39.5 10.0 74 108-184 219-292 (292)
47 PF02118 Srg: Srg family chemo 85.9 14 0.00031 34.4 12.2 71 328-400 204-274 (275)
48 PF10319 7TM_GPCR_Srj: Serpent 85.8 9.2 0.0002 36.3 10.4 71 327-400 238-309 (310)
49 PF10318 7TM_GPCR_Srh: Serpent 84.3 5.7 0.00012 37.8 8.8 81 104-188 221-302 (302)
50 PF10292 7TM_GPCR_Srab: Serpen 74.7 83 0.0018 30.3 15.0 82 324-406 222-305 (324)
51 PF03402 V1R: Vomeronasal orga 64.8 6.1 0.00013 36.8 3.0 71 108-182 193-263 (265)
52 KOG2575|consensus 62.7 6.8 0.00015 38.2 2.9 25 330-354 254-278 (510)
53 PF09889 DUF2116: Uncharacteri 62.3 13 0.00029 25.6 3.5 26 105-130 29-54 (59)
54 PF02076 STE3: Pheromone A rec 59.8 77 0.0017 29.9 9.4 27 332-359 196-222 (283)
55 PF04789 DUF621: Protein of un 56.6 66 0.0014 30.0 7.9 110 239-404 186-295 (305)
56 PF09889 DUF2116: Uncharacteri 55.3 22 0.00048 24.6 3.6 23 327-349 32-54 (59)
57 PF10322 7TM_GPCR_Sru: Serpent 54.5 37 0.00079 32.5 6.4 26 246-271 201-226 (307)
58 PF10292 7TM_GPCR_Srab: Serpen 53.7 2.1E+02 0.0046 27.5 12.4 82 105-187 222-305 (324)
59 KOG2575|consensus 53.5 15 0.00032 35.9 3.5 24 111-134 254-277 (510)
60 KOG4193|consensus 52.5 91 0.002 33.0 9.4 67 113-187 514-580 (610)
61 PF10326 7TM_GPCR_Str: Serpent 48.5 3.7 8E-05 39.2 -1.4 73 107-183 234-307 (307)
62 COG1862 YajC Preprotein transl 48.2 27 0.00059 26.9 3.6 31 248-278 11-41 (97)
63 PF00375 SDF: Sodium:dicarboxy 47.7 2.1E+02 0.0047 28.3 11.0 76 331-406 166-247 (390)
64 PF10319 7TM_GPCR_Srj: Serpent 45.1 64 0.0014 30.8 6.3 73 106-181 236-309 (310)
65 KOG3827|consensus 41.4 13 0.00029 35.9 1.2 32 330-361 59-90 (400)
66 KOG3827|consensus 41.4 15 0.00033 35.5 1.6 62 111-172 59-120 (400)
67 PF06072 Herpes_US9: Alphaherp 39.3 1.3E+02 0.0028 20.8 5.4 28 107-134 24-52 (60)
68 PF02118 Srg: Srg family chemo 39.2 1.6E+02 0.0034 27.3 8.2 71 109-181 204-274 (275)
69 PF03125 Sre: C. elegans Sre G 38.2 3.9E+02 0.0085 26.2 11.0 42 150-191 283-324 (365)
70 PHA01815 hypothetical protein 38.2 1.1E+02 0.0023 19.7 4.4 29 241-269 7-35 (55)
71 PF13853 7tm_4: Olfactory rece 36.8 0.12 2.6E-06 43.4 -12.0 36 236-271 53-88 (144)
72 COG2322 Predicted membrane pro 36.7 2.7E+02 0.0059 23.8 8.1 29 328-356 73-101 (177)
73 PRK04989 psbM photosystem II r 35.1 58 0.0013 19.7 2.8 23 240-262 6-28 (35)
74 TIGR03038 PS_II_psbM photosyst 32.0 75 0.0016 19.0 2.8 23 240-262 6-28 (33)
75 PF11395 DUF2873: Protein of u 32.0 1.2E+02 0.0026 18.5 3.8 23 240-262 10-32 (43)
76 CHL00080 psbM photosystem II p 30.9 72 0.0016 19.1 2.7 23 240-262 6-28 (34)
77 PRK11877 psaI photosystem I re 29.9 1.1E+02 0.0025 19.0 3.5 23 241-263 12-34 (38)
78 CHL00186 psaI photosystem I su 29.4 1.2E+02 0.0025 18.7 3.4 23 241-263 8-30 (36)
79 PF05151 PsbM: Photosystem II 29.0 1.3E+02 0.0028 17.8 3.7 22 241-262 7-28 (31)
80 PF05393 Hum_adeno_E3A: Human 28.5 66 0.0014 24.1 2.7 17 114-130 40-56 (94)
81 PF05545 FixQ: Cbb3-type cytoc 26.6 1.4E+02 0.0031 19.5 4.0 31 242-272 5-35 (49)
82 KOG4564|consensus 26.5 30 0.00066 35.0 1.0 71 111-188 349-419 (473)
83 PRK06531 yajC preprotein trans 26.3 77 0.0017 25.2 3.0 26 249-274 5-30 (113)
84 KOG3500|consensus 25.9 45 0.00098 24.5 1.5 26 331-358 31-56 (84)
85 PF02699 YajC: Preprotein tran 25.8 1.5E+02 0.0033 21.9 4.5 26 253-278 9-34 (82)
86 PF05478 Prominin: Prominin; 25.5 1.4E+02 0.003 33.0 5.9 28 334-361 460-487 (806)
87 TIGR02230 ATPase_gene1 F0F1-AT 25.4 3.3E+02 0.0071 21.2 7.7 59 111-169 35-93 (100)
88 TIGR03052 PS_I_psaI photosyste 25.0 77 0.0017 18.7 2.1 22 242-263 6-27 (31)
89 COG4736 CcoQ Cbb3-type cytochr 24.8 1.6E+02 0.0035 20.4 4.0 37 240-276 3-39 (60)
90 PF04505 Dispanin: Interferon- 24.4 2.6E+02 0.0057 20.7 5.5 29 237-266 18-46 (82)
91 PF03155 Alg6_Alg8: ALG6, ALG8 23.4 1.9E+02 0.004 29.6 5.9 25 110-134 219-243 (469)
92 PHA02909 hypothetical protein; 22.8 2.5E+02 0.0054 18.9 4.8 12 211-222 17-28 (72)
93 COG3924 Predicted membrane pro 22.4 1.4E+02 0.0031 21.4 3.4 25 243-267 45-69 (80)
94 PF15086 UPF0542: Uncharacteri 22.2 3.1E+02 0.0067 19.8 6.6 37 237-273 17-54 (74)
95 PF10192 GpcrRhopsn4: Rhodopsi 22.2 6.2E+02 0.013 23.3 9.6 35 330-364 59-93 (257)
96 PF12273 RCR: Chitin synthesis 21.6 1E+02 0.0022 25.2 3.0 9 264-272 20-28 (130)
97 TIGR00739 yajC preprotein tran 21.2 1.3E+02 0.0028 22.5 3.3 27 251-277 7-34 (84)
98 COG4068 Uncharacterized protei 21.1 1.8E+02 0.0039 20.0 3.5 24 328-351 37-62 (64)
99 PRK14094 psbM photosystem II r 20.8 85 0.0019 20.4 1.8 24 240-263 6-29 (50)
No 1
>KOG4219|consensus
Probab=99.86 E-value=3.8e-22 Score=186.14 Aligned_cols=128 Identities=20% Similarity=0.506 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCC
Q psy16676 238 FGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHST 317 (461)
Q Consensus 238 ~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (461)
..|..++.++.+++|++||.++|..|...+|..+....
T Consensus 207 ~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd------------------------------------------ 244 (423)
T KOG4219|consen 207 QGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGD------------------------------------------ 244 (423)
T ss_pred cceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccc------------------------------------------
Confidence 34888899999999999999999999999998752211
Q ss_pred CcchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCC--CCChhHHHHHHHHHHHHhhhhhHHHhhhcCh
Q psy16676 318 PTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDA--CDCPDYVVAIFFWIGYFNSTLNPLIYAYFNR 395 (461)
Q Consensus 318 ~~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~--~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~ 395 (461)
+..+.....++++|++||+++||++|.+||+||+++.++....++- ......++....||+.+|+|.||+||+++|+
T Consensus 245 -~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~ 323 (423)
T KOG4219|consen 245 -QQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNK 323 (423)
T ss_pred -hhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHH
Confidence 1113445678899999999999999999999999999988755321 1233677788899999999999999999999
Q ss_pred HHHHHHHHhhhcc
Q psy16676 396 DFREAFKNTLQCA 408 (461)
Q Consensus 396 ~fR~~~~~~~~~~ 408 (461)
+||.+|++.|+|+
T Consensus 324 Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 324 RFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHhhhhhee
Confidence 9999999999964
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.83 E-value=2.6e-20 Score=180.24 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCcchhhH
Q psy16676 245 SSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNI 324 (461)
Q Consensus 245 ~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (461)
+++.|++|+++|++||.+|.+.+++..
T Consensus 202 ~~~~f~iPl~im~~cY~~I~~~L~~~~----------------------------------------------------- 228 (338)
T PHA03234 202 CFIWGIFPTMIFSFFYVIFCKALHALT----------------------------------------------------- 228 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 344679999999999999999886531
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhC----CCCCC---hhHHHHHHHHHHHHhhhhhHHHhhhcChHH
Q psy16676 325 IKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCG----DACDC---PDYVVAIFFWIGYFNSTLNPLIYAYFNRDF 397 (461)
Q Consensus 325 ~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~----~~~~~---~~~~~~~~~~l~~~ns~iNPiiY~~~~~~f 397 (461)
.++++|++||+++|+++|++||+||+++.++..+.. ..+.. ....+.++.+|+++|||+||+||++++++|
T Consensus 229 --~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~F 306 (338)
T PHA03234 229 --EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDF 306 (338)
T ss_pred --hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHH
Confidence 134679999999999999999999999887655431 12211 134467888999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy16676 398 REAFKNTLQC 407 (461)
Q Consensus 398 R~~~~~~~~~ 407 (461)
|++++++++.
T Consensus 307 R~~~~~~~~~ 316 (338)
T PHA03234 307 RLRFTACFQD 316 (338)
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.82 E-value=8.3e-20 Score=180.70 Aligned_cols=114 Identities=18% Similarity=0.365 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCC
Q psy16676 239 GNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTP 318 (461)
Q Consensus 239 ~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (461)
.|.++.+++.|++|+++|++||.+|++.+|++.+
T Consensus 203 ~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~---------------------------------------------- 236 (409)
T PHA03235 203 TFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY---------------------------------------------- 236 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------------------------
Confidence 5677778888999999999999999999986532
Q ss_pred cchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCC----CCC---ChhHHHHHHHHHHHHhhhhhHHHhh
Q psy16676 319 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD----ACD---CPDYVVAIFFWIGYFNSTLNPLIYA 391 (461)
Q Consensus 319 ~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~----~~~---~~~~~~~~~~~l~~~ns~iNPiiY~ 391 (461)
++++|+++|+++++++|++||+||+++.++..+... .+. ....+..+..+|+++|||+||+||+
T Consensus 237 ---------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~ 307 (409)
T PHA03235 237 ---------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYA 307 (409)
T ss_pred ---------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 234577889999999999999999999887655321 111 1234567888999999999999999
Q ss_pred hcChHHHHHHHHhhhc
Q psy16676 392 YFNRDFREAFKNTLQC 407 (461)
Q Consensus 392 ~~~~~fR~~~~~~~~~ 407 (461)
+++++||+++++.++.
T Consensus 308 ~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 308 FLGNDFLKRFRQCFRG 323 (409)
T ss_pred HhhHHHHHHHHHHHhh
Confidence 9999999999999874
No 4
>KOG4220|consensus
Probab=99.81 E-value=1.4e-19 Score=168.64 Aligned_cols=81 Identities=41% Similarity=0.831 Sum_probs=74.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhhhc
Q psy16676 328 KREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 407 (461)
Q Consensus 328 ~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~ 407 (461)
.+++|++|++.+|+++|++||+||+|+.++..|+. +| .+..++.+..||.|+||.+||++|++.|..||+.|+++|.|
T Consensus 410 ~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~-~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~C 487 (503)
T KOG4220|consen 410 VRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCK-NC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLC 487 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcc-cc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhee
Confidence 67899999999999999999999999999999984 44 67889999999999999999999999999999999999987
Q ss_pred ccc
Q psy16676 408 AFC 410 (461)
Q Consensus 408 ~~~ 410 (461)
++-
T Consensus 488 r~~ 490 (503)
T KOG4220|consen 488 RWK 490 (503)
T ss_pred eec
Confidence 643
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.78 E-value=6.7e-19 Score=170.23 Aligned_cols=113 Identities=21% Similarity=0.416 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCc
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPT 319 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (461)
|....+++.|++|+++|++||.+|++.+|++.+
T Consensus 189 ~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~----------------------------------------------- 221 (323)
T PHA02834 189 FNFEINIFGIVIPLIILIYCYSKILYTLKNCKN----------------------------------------------- 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------------------------------------
Confidence 344456889999999999999999999876421
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCC-----CC-h--hHHHHHHHHHHHHhhhhhHHHhh
Q psy16676 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDAC-----DC-P--DYVVAIFFWIGYFNSTLNPLIYA 391 (461)
Q Consensus 320 ~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~-----~~-~--~~~~~~~~~l~~~ns~iNPiiY~ 391 (461)
++++|++||+++++++|++||+||+++.++..+.+... .. . .....+..+++++|||+||+||+
T Consensus 222 --------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~ 293 (323)
T PHA02834 222 --------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYA 293 (323)
T ss_pred --------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 12458889999999999999999999988766542211 10 1 11345778899999999999999
Q ss_pred hcChHHHHHHHHhhhc
Q psy16676 392 YFNRDFREAFKNTLQC 407 (461)
Q Consensus 392 ~~~~~fR~~~~~~~~~ 407 (461)
+++++||+++++++++
T Consensus 294 ~~~~~fR~~~~~~~~~ 309 (323)
T PHA02834 294 FVGKNFKKVFKNMFCR 309 (323)
T ss_pred HhcHHHHHHHHHHHHh
Confidence 9999999999998854
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=164.32 Aligned_cols=114 Identities=20% Similarity=0.424 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCC
Q psy16676 239 GNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTP 318 (461)
Q Consensus 239 ~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (461)
.+.+...++.|++|+++|++||.+|++.+++..+
T Consensus 272 ~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~---------------------------------------------- 305 (417)
T PHA02638 272 ILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK---------------------------------------------- 305 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------------
Confidence 3555567888999999999999999999865321
Q ss_pred cchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCC----------CCCC--hhHHHHHHHHHHHHhhhhh
Q psy16676 319 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD----------ACDC--PDYVVAIFFWIGYFNSTLN 386 (461)
Q Consensus 319 ~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~----------~~~~--~~~~~~~~~~l~~~ns~iN 386 (461)
++++|++|++++++++|++||+||+++.++..+... .+.. ......++.+++++|||+|
T Consensus 306 ---------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclN 376 (417)
T PHA02638 306 ---------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCIN 376 (417)
T ss_pred ---------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 235678899999999999999999999888765421 1111 1344567889999999999
Q ss_pred HHHhhhcChHHHHHHHHhhhc
Q psy16676 387 PLIYAYFNRDFREAFKNTLQC 407 (461)
Q Consensus 387 PiiY~~~~~~fR~~~~~~~~~ 407 (461)
|+||++++++||+++++++++
T Consensus 377 PiIY~f~~~~FR~~l~~~~~~ 397 (417)
T PHA02638 377 PLIYTLIGENFRMHLLMIFRN 397 (417)
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999998864
No 7
>KOG4220|consensus
Probab=99.73 E-value=6.4e-18 Score=157.57 Aligned_cols=82 Identities=39% Similarity=0.783 Sum_probs=75.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcc
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~ 187 (461)
..+|+|++|++..|+++|++||.||+|+.++..|+.. ..+..++.+.+||.|+||.+||++|++.|..||+.|+++|.
T Consensus 409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~--CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~ 486 (503)
T KOG4220|consen 409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN--CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL 486 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc--ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence 3789999999999999999999999999999988753 45677899999999999999999999999999999999999
Q ss_pred cccc
Q psy16676 188 CAFC 191 (461)
Q Consensus 188 ~~~~ 191 (461)
|++-
T Consensus 487 Cr~~ 490 (503)
T KOG4220|consen 487 CRWK 490 (503)
T ss_pred eeec
Confidence 8763
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.63 E-value=2.6e-15 Score=146.31 Aligned_cols=114 Identities=28% Similarity=0.452 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCc
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPT 319 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (461)
+.+...++.+++|+++++++|.+|.+.++++.+
T Consensus 203 ~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~----------------------------------------------- 235 (335)
T PHA03087 203 INFEINIIGMLIPLTILLYCYSKILITLKGINK----------------------------------------------- 235 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------------------------------------------
Confidence 334456788999999999999999888865421
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhC----CCCC---ChhHHHHHHHHHHHHhhhhhHHHhhh
Q psy16676 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCG----DACD---CPDYVVAIFFWIGYFNSTLNPLIYAY 392 (461)
Q Consensus 320 ~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~----~~~~---~~~~~~~~~~~l~~~ns~iNPiiY~~ 392 (461)
.++++|++|++++++++|++||+||.+..++..+.. ..+. .......+..+++++|+++||+||++
T Consensus 236 -------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~ 308 (335)
T PHA03087 236 -------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAF 308 (335)
T ss_pred -------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 134578999999999999999999999877664421 1111 11344467778999999999999999
Q ss_pred cChHHHHHHHHhhhc
Q psy16676 393 FNRDFREAFKNTLQC 407 (461)
Q Consensus 393 ~~~~fR~~~~~~~~~ 407 (461)
++++||++++++++.
T Consensus 309 ~~~~fr~~~~~~~~~ 323 (335)
T PHA03087 309 VSEFFNKHKKKSLKL 323 (335)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999999864
No 9
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.62 E-value=8.4e-16 Score=148.84 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----CCCCC---chhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCG----DACDC---PDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFK 183 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~----~~~~~---~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~ 183 (461)
++|++||+++++++|++||+||+++.++..+.. ..+.. ....+.++.+|+++|||+||+||++++++||++++
T Consensus 232 ~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~ 311 (338)
T PHA03234 232 HKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFT 311 (338)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHH
Confidence 468999999999999999999999877654321 11211 12446678889999999999999999999999999
Q ss_pred Hhccc
Q psy16676 184 NTLQC 188 (461)
Q Consensus 184 ~~~~~ 188 (461)
+.++.
T Consensus 312 ~~~~~ 316 (338)
T PHA03234 312 ACFQD 316 (338)
T ss_pred HHHHH
Confidence 87763
No 10
>KOG4219|consensus
Probab=99.59 E-value=1.7e-15 Score=141.85 Aligned_cols=92 Identities=23% Similarity=0.599 Sum_probs=76.0
Q ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHH
Q psy16676 102 DRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDA--CDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFR 179 (461)
Q Consensus 102 ~~~~~~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr 179 (461)
.++..+.+.++|++||+++|++.|.+||+||+++.++....++- .......+....||+..|+|+||+||+++|++||
T Consensus 247 d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr 326 (423)
T KOG4219|consen 247 DRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFR 326 (423)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHH
Confidence 35567788899999999999999999999999999987654321 1223456777889999999999999999999999
Q ss_pred HHHHHhcccccccC
Q psy16676 180 EAFKNTLQCAFCSL 193 (461)
Q Consensus 180 ~~~~~~~~~~~~~~ 193 (461)
.+|++.++|+.+..
T Consensus 327 ~gf~~~fr~cp~v~ 340 (423)
T KOG4219|consen 327 GGFRRAFRWCPFVK 340 (423)
T ss_pred HHHhhhhheeeeec
Confidence 99999999765333
No 11
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.54 E-value=1.5e-14 Score=143.35 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC----CCC---CchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHH
Q psy16676 112 HKAARTLGIIMGTFILCWLPFFLWYVITSLCGD----ACD---CPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKN 184 (461)
Q Consensus 112 ~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~----~~~---~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~ 184 (461)
+|.++|+++++++|++||+||+++.++..+... .+. .......++.+|+++|||+||+||++++++||+++++
T Consensus 240 ~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~ 319 (409)
T PHA03235 240 SRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQ 319 (409)
T ss_pred hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHH
Confidence 366788999999999999999998877654221 111 1234556778899999999999999999999999999
Q ss_pred hcccc
Q psy16676 185 TLQCA 189 (461)
Q Consensus 185 ~~~~~ 189 (461)
.+++.
T Consensus 320 ~l~~~ 324 (409)
T PHA03235 320 CFRGE 324 (409)
T ss_pred HHhhh
Confidence 88754
No 12
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.53 E-value=6.8e-13 Score=123.28 Aligned_cols=113 Identities=30% Similarity=0.579 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCC
Q psy16676 237 EFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHS 316 (461)
Q Consensus 237 ~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (461)
...|.+...++.+++|+++++++|.+|++.+|++.++.....
T Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------------------- 186 (257)
T PF00001_consen 145 SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQS-------------------------------------- 186 (257)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHT--------------------------------------
T ss_pred cccccccccccccccceeeeeeeccccccccccccccccccc--------------------------------------
Confidence 457888899999999999999999999999999887543322
Q ss_pred CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHh
Q psy16676 317 TPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIY 390 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY 390 (461)
........++++|+++++++++++|++||+|+.+..++..+.+...........+..+++++|+++||+||
T Consensus 187 ---~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 187 ---SSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 13445566888999999999999999999999999998888755422567888899999999999999999
No 13
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.49 E-value=1.6e-14 Score=139.80 Aligned_cols=77 Identities=23% Similarity=0.494 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCC-----CC-ch--hHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHH
Q psy16676 112 HKAARTLGIIMGTFILCWLPFFLWYVITSLCGDAC-----DC-PD--YVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFK 183 (461)
Q Consensus 112 ~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~-----~~-~~--~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~ 183 (461)
+|.+||+++++++|++||+||+++.++..+..... .. .. ....++.+++++|||+||+||++++++||++++
T Consensus 225 ~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~ 304 (323)
T PHA02834 225 TRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFK 304 (323)
T ss_pred ceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHH
Confidence 36678999999999999999999887765432111 11 11 123567789999999999999999999999999
Q ss_pred Hhccc
Q psy16676 184 NTLQC 188 (461)
Q Consensus 184 ~~~~~ 188 (461)
++++|
T Consensus 305 ~~~~~ 309 (323)
T PHA02834 305 NMFCR 309 (323)
T ss_pred HHHHh
Confidence 98854
No 14
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.43 E-value=2.4e-13 Score=135.40 Aligned_cols=80 Identities=21% Similarity=0.462 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC----------CCCC--chhHHHHHHHHHHHhhhHHHHHHHhccHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCGD----------ACDC--PDYVVAIFFWIGYFNSTLNPLIYAYFNRDF 178 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~----------~~~~--~~~~~~~~~~l~~~ns~~NP~iY~~~~~~f 178 (461)
++|.+|++++++++|++||+||+++.++..+... .+.. ......++.+++++|||+||+||++++++|
T Consensus 308 k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~F 387 (417)
T PHA02638 308 KTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENF 387 (417)
T ss_pred cchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHH
Confidence 3466799999999999999999998887654311 1111 123456777899999999999999999999
Q ss_pred HHHHHHhccccc
Q psy16676 179 REAFKNTLQCAF 190 (461)
Q Consensus 179 r~~~~~~~~~~~ 190 (461)
|+++++++++..
T Consensus 388 R~~l~~~~~~~~ 399 (417)
T PHA02638 388 RMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHhc
Confidence 999999886443
No 15
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.20 E-value=4.1e-11 Score=116.80 Aligned_cols=78 Identities=29% Similarity=0.494 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC----CCCC---CchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCG----DACD---CPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFK 183 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~----~~~~---~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~ 183 (461)
++|++|++++++++|++||+|+++..++..+.. ..+. .......+..+++.+|+++||+||++++++||++++
T Consensus 239 ~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~ 318 (335)
T PHA03087 239 NKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKK 318 (335)
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHH
Confidence 457899999999999999999998776654311 1111 112344567789999999999999999999999999
Q ss_pred Hhccc
Q psy16676 184 NTLQC 188 (461)
Q Consensus 184 ~~~~~ 188 (461)
+.++.
T Consensus 319 ~~~~~ 323 (335)
T PHA03087 319 KSLKL 323 (335)
T ss_pred HHHHH
Confidence 99864
No 16
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.07 E-value=6.1e-10 Score=103.33 Aligned_cols=69 Identities=35% Similarity=0.723 Sum_probs=57.8
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHH
Q psy16676 103 RNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIY 171 (461)
Q Consensus 103 ~~~~~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY 171 (461)
....+.++++|.++++++++++|++||+|+.+..++..+.+...........++.++.++|+++||+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 189 SSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 344556788999999999999999999999999888877654322456778888999999999999999
No 17
>KOG2087|consensus
Probab=98.93 E-value=3.8e-11 Score=111.83 Aligned_cols=129 Identities=18% Similarity=0.277 Sum_probs=93.1
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccC
Q psy16676 225 YLKHHIDRRTSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVG 304 (461)
Q Consensus 225 ~~~~~~~~~~~~~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (461)
-.+.+++.+......|.+..++..-.+-+++|+++|++|+..+++......
T Consensus 177 ~vClPL~~~~~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~----------------------------- 227 (363)
T KOG2087|consen 177 SVCLPLHIEEPLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT----------------------------- 227 (363)
T ss_pred ceeeecccCCccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc-----------------------------
Confidence 344455555566665778888889999999999999999999876432100
Q ss_pred CccccccccCCCCCcchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhh
Q psy16676 305 AGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNST 384 (461)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~ 384 (461)
....+.+|-+..++.+-++||.|..++.+...+..+-. .......++....-+|||
T Consensus 228 -----------------------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li-~~~~sk~llv~flPlns~ 283 (363)
T KOG2087|consen 228 -----------------------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELI-SVSYSKWLLVFFLPLNSC 283 (363)
T ss_pred -----------------------cchhhhhhCeeEEEEccccccCchheeeeHHhcCCccc-ChhhceeEEEEEEEcccc
Confidence 01136777788999999999999999988877653321 111111222334458999
Q ss_pred hhHHHhhhcChHHHHHHHHhhh
Q psy16676 385 LNPLIYAYFNRDFREAFKNTLQ 406 (461)
Q Consensus 385 iNPiiY~~~~~~fR~~~~~~~~ 406 (461)
+||++|+|+++.||+.++.++.
T Consensus 284 ~NP~LYa~fT~~fk~d~~~l~~ 305 (363)
T KOG2087|consen 284 LNPFLYAFFTPVFKEDLFLLLS 305 (363)
T ss_pred cCchhHHHcCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 18
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.89 E-value=1.5e-08 Score=98.06 Aligned_cols=123 Identities=15% Similarity=0.290 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCc
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPT 319 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (461)
|..+-.++.-++|.++..++.+.+...+|+.+++.++..
T Consensus 192 ~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~----------------------------------------- 230 (318)
T PF10324_consen 192 YFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLS----------------------------------------- 230 (318)
T ss_pred HHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc-----------------------------------------
Confidence 444444555789999999999999999998877644322
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCC---CChhHHHHHHHHHHHHhhhhhHHHhhhcChH
Q psy16676 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDAC---DCPDYVVAIFFWIGYFNSTLNPLIYAYFNRD 396 (461)
Q Consensus 320 ~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~---~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~ 396 (461)
++ ..+++.++++|++++++.|+++-+|+.+..++..+..+.. ........+..+|..+|+++|++||++++.+
T Consensus 231 --~~--~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsq 306 (318)
T PF10324_consen 231 --SS--KSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQ 306 (318)
T ss_pred --cc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHH
Confidence 00 0245668999999999999999999999999987643322 2235566777889999999999999999999
Q ss_pred HHHHHHHhhhc
Q psy16676 397 FREAFKNTLQC 407 (461)
Q Consensus 397 fR~~~~~~~~~ 407 (461)
||+.++++|+|
T Consensus 307 YR~t~~~~f~~ 317 (318)
T PF10324_consen 307 YRKTVKKLFGC 317 (318)
T ss_pred HHHHHHHHhcc
Confidence 99999999986
No 19
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.43 E-value=6.9e-06 Score=78.41 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCC
Q psy16676 237 EFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHS 316 (461)
Q Consensus 237 ~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (461)
+..+......+..++|+++++++-..+...++||.++++....+.
T Consensus 177 ~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~----------------------------------- 221 (303)
T PF05296_consen 177 SYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGF----------------------------------- 221 (303)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----------------------------------
Confidence 344455555699999999999999999999999999887644111
Q ss_pred CCcchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChH
Q psy16676 317 TPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRD 396 (461)
Q Consensus 317 ~~~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~ 396 (461)
+..+.+++.|++|+++..++.|+++++-..+..+-..+. .......+...+.++.+...|+|--+-|++
T Consensus 222 ------~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~yps~hs~iLIlgn~K 290 (303)
T PF05296_consen 222 ------RDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFFP-----ENSIWFWVCEIIIALYPSGHSIILILGNPK 290 (303)
T ss_pred ------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 011237888999999988888887665544322222121 234455677788899999999999999999
Q ss_pred HHHHHHHhhhcc
Q psy16676 397 FREAFKNTLQCA 408 (461)
Q Consensus 397 fR~~~~~~~~~~ 408 (461)
+|++++++++|.
T Consensus 291 Lr~~~~~il~~~ 302 (303)
T PF05296_consen 291 LRQALLKILWCL 302 (303)
T ss_pred HHHHHHHHHhhc
Confidence 999999999764
No 20
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.09 E-value=7.4e-06 Score=79.19 Aligned_cols=81 Identities=16% Similarity=0.334 Sum_probs=66.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCC---CchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHh
Q psy16676 109 KREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACD---CPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNT 185 (461)
Q Consensus 109 ~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~---~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~ 185 (461)
+++.+.+++++++++.|+++=+|..+..++..+...... .......+..++..+|+..|++||++++.+||++++++
T Consensus 235 ~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~ 314 (318)
T PF10324_consen 235 KKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKL 314 (318)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHH
Confidence 466789999999999999999999999888776432221 12344556778999999999999999999999999999
Q ss_pred cccc
Q psy16676 186 LQCA 189 (461)
Q Consensus 186 ~~~~ 189 (461)
++|+
T Consensus 315 f~~k 318 (318)
T PF10324_consen 315 FGCK 318 (318)
T ss_pred hccC
Confidence 9863
No 21
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.05 E-value=1.5e-05 Score=74.30 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=63.0
Q ss_pred HhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhh
Q psy16676 328 KREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405 (461)
Q Consensus 328 ~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~ 405 (461)
...+|+.|.+.+++++|++.|.=..+...+....+.+.+....+.....+++..|.+.|-+||.+.|++||++++++|
T Consensus 180 ~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 180 SRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred hhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 456799999999999999999888777666554434333334556667789999999999999999999999999875
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.00 E-value=0.00016 Score=68.45 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCcchhhHH
Q psy16676 246 SISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNII 325 (461)
Q Consensus 246 ~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (461)
.....+-+++.+++|+.++..+|++.+... ++..+
T Consensus 169 ~~~~~~~cv~~iv~Y~~i~~~iRk~~k~~s---------------------------------------------~~~s~ 203 (283)
T PF10323_consen 169 FIFVSVTCVICIVCYGIIFIFIRKRNKKKS---------------------------------------------KSSSR 203 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---------------------------------------------Hhhhh
Confidence 444556677889999999999998764211 12334
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhh
Q psy16676 326 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405 (461)
Q Consensus 326 ~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~ 405 (461)
..++|.+.+.+.+++++++++..+=+ +...+.... .+.+.......+.-.+.-..|.+||+.-.++|+++|+.+++.+
T Consensus 204 ~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~-~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~ 281 (283)
T PF10323_consen 204 SRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQN-FNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRML 281 (283)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhc-ccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHc
Confidence 56778888888887777766555444 333333332 1111122222355566778899999999999999999999998
Q ss_pred hc
Q psy16676 406 QC 407 (461)
Q Consensus 406 ~~ 407 (461)
+|
T Consensus 282 ~~ 283 (283)
T PF10323_consen 282 KC 283 (283)
T ss_pred CC
Confidence 75
No 23
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.62 E-value=0.00025 Score=67.55 Aligned_cols=113 Identities=15% Similarity=0.105 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCc
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPT 319 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (461)
|.-..-.+.-++-.+.+.++|+.++..++++.+....
T Consensus 195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s------------------------------------------- 231 (313)
T PF10321_consen 195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTS------------------------------------------- 231 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-------------------------------------------
Confidence 4333333444444677889999999999887654211
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHH
Q psy16676 320 KDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFRE 399 (461)
Q Consensus 320 ~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~ 399 (461)
....+.++++.--..++.+...+.++=|..+.++. .+.++..+....=-+++..||+||..+|+..|+
T Consensus 232 ----~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~~--------~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~ 299 (313)
T PF10321_consen 232 ----SQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFFP--------PPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRN 299 (313)
T ss_pred ----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeeec--------ccHHHHHHHHHHHhccCCccceEEEEECHHHHH
Confidence 11345666777777777777777766665544432 356677777777779999999999999999999
Q ss_pred HHHHhhhc
Q psy16676 400 AFKNTLQC 407 (461)
Q Consensus 400 ~~~~~~~~ 407 (461)
+++++++.
T Consensus 300 ~~~k~~~~ 307 (313)
T PF10321_consen 300 SVLKMLGP 307 (313)
T ss_pred HHHHHHcc
Confidence 99999964
No 24
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.51 E-value=0.00074 Score=63.93 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=54.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHh
Q psy16676 106 IKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNT 185 (461)
Q Consensus 106 ~~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~ 185 (461)
++.++|.+++.+.++.++++++... |++...+...... .........+...+.-+.|.+||+.-.+.|+++|+.+++.
T Consensus 203 ~~~~rE~~L~~~~~i~~~a~~~~~~-~~~~~~~~~~~~~-~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~ 280 (283)
T PF10323_consen 203 RSRRREIRLAIQVFILFCAFFVILV-YYIFSNYFAQNFN-TDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRM 280 (283)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHH
Confidence 4567788888888877777666444 4444444333221 1111122235556788899999999999999999999999
Q ss_pred ccc
Q psy16676 186 LQC 188 (461)
Q Consensus 186 ~~~ 188 (461)
++|
T Consensus 281 ~~~ 283 (283)
T PF10323_consen 281 LKC 283 (283)
T ss_pred cCC
Confidence 886
No 25
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.28 E-value=0.00026 Score=66.11 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=61.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhc
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 186 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~ 186 (461)
...++|+.|.+.+++++|++.|+=..+...+....+.+............++..+|.+.|-++|.+.++|||+++++++
T Consensus 179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 4556889999999999999999977766665544333322333455566789999999999999999999999999864
No 26
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.14 E-value=0.051 Score=51.98 Aligned_cols=111 Identities=16% Similarity=0.252 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCC
Q psy16676 239 GNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTP 318 (461)
Q Consensus 239 ~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (461)
.+.....+++..+-.+++.+++..|++.+++.+++..+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~~----------------------------------------- 230 (303)
T PF10327_consen 192 IFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISKQ----------------------------------------- 230 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-----------------------------------------
Confidence 344455556666777888889999999998877665432
Q ss_pred cchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHH
Q psy16676 319 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFR 398 (461)
Q Consensus 319 ~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 398 (461)
..++++++++-+++=.++-.+|-+|..++.++..+..+ ....+..+...+.-+.|.+|=++-.+.++.||
T Consensus 231 -------ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~---~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR 300 (303)
T PF10327_consen 231 -------TYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFE---DAQVISEICLAIFSSHSSVNMIVLIITTPPYR 300 (303)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCC---CcHHHHHHHHHHHHHhhHhhheeeeEcCcchh
Confidence 46788899999999999999999999888776554322 33455566667777999999999999999999
Q ss_pred HH
Q psy16676 399 EA 400 (461)
Q Consensus 399 ~~ 400 (461)
+.
T Consensus 301 ~f 302 (303)
T PF10327_consen 301 KF 302 (303)
T ss_pred hc
Confidence 84
No 27
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.07 E-value=0.024 Score=53.92 Aligned_cols=67 Identities=16% Similarity=0.329 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhhhc
Q psy16676 337 LGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 407 (461)
Q Consensus 337 l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~ 407 (461)
+..=.++|++||+|-.|-.+...+. .. +..+...-..++-+.-.+|.++|++-++-.++.+...++|
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~-~~---~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~ 270 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIG-KN---PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CC---chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4467788999999999998888764 21 2333333345566677899999999999999998877754
No 28
>KOG2087|consensus
Probab=96.93 E-value=2.1e-05 Score=73.93 Aligned_cols=74 Identities=23% Similarity=0.442 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcc
Q psy16676 113 KAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187 (461)
Q Consensus 113 k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~ 187 (461)
+.+|-+..++..=++||.|..++.+...+..+... ....-.+..++.-+|||+||++|+++++.||+.++.++.
T Consensus 232 ~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~-~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~ 305 (363)
T KOG2087|consen 232 SVAKRMAFLVFTDCICWCPIAFFKFSALIGVELIS-VSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLS 305 (363)
T ss_pred hhhhCeeEEEEccccccCchheeeeHHhcCCcccC-hhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHh
Confidence 45566788888999999999988887666533211 111112333456789999999999999999999988875
No 29
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.39 E-value=0.055 Score=51.01 Aligned_cols=111 Identities=12% Similarity=0.101 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCcchhhHH
Q psy16676 246 SISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNII 325 (461)
Q Consensus 246 ~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (461)
+....+-.+++.+++..++.++++..++... ......+
T Consensus 163 ~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~------------------------------------------~~~~s~~ 200 (274)
T PF10328_consen 163 FYKNFILVIISNILNIITFIKLRKFRKKISV------------------------------------------SSSESKK 200 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccc------------------------------------------cchhhHH
Confidence 4444444566778888888888887665311 1123445
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhh
Q psy16676 326 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTL 405 (461)
Q Consensus 326 ~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~ 405 (461)
+.++|.+.++-.++--++|++.|+=|++..-+. + .....+......-.+..++|++|+.++|+++|+..++..
T Consensus 201 r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~----~---~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 201 RRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS----S---NRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c---ccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 667788999999999999999998887764442 1 122223233332346678899999999999999988753
No 30
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.26 E-value=0.064 Score=51.09 Aligned_cols=74 Identities=19% Similarity=0.388 Sum_probs=58.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHH
Q psy16676 327 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKN 403 (461)
Q Consensus 327 ~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~ 403 (461)
++.+++.+|.+.+=.+.=+++.+|-....++..+.+.. ..........++.+-+.+||+++..+-+-||++++|
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~---~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE---HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 35667888999999999999999888877777665432 445555666677788999999999999999999864
No 31
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=96.10 E-value=0.036 Score=53.02 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=55.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcc
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~ 187 (461)
.+...|++|+++..++.|+++++-..+..+ ..... .......+...+.++.+...|+|--+-|+++|++++++++
T Consensus 226 ~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~ 300 (303)
T PF05296_consen 226 TEAHIRAIKTMISFLILYIIYFLSLILSFL-SFFFP----ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILW 300 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc----cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 356778899998888888776665333222 22111 1233456677889999999999999999999999999987
Q ss_pred cc
Q psy16676 188 CA 189 (461)
Q Consensus 188 ~~ 189 (461)
|.
T Consensus 301 ~~ 302 (303)
T PF05296_consen 301 CL 302 (303)
T ss_pred hc
Confidence 64
No 32
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=95.87 E-value=0.099 Score=50.08 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHhchhHHHHHHHH
Q psy16676 332 KAARTLGIIMGTFILCWLPFFLWYVIT 358 (461)
Q Consensus 332 k~~r~l~~vv~~F~icw~P~~v~~l~~ 358 (461)
.+-+-.+.|+++|.+||+|-.|--++.
T Consensus 241 ~IK~kFf~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 241 QIKIKFFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence 334456678999999999998865543
No 33
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=95.82 E-value=0.038 Score=40.50 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=49.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHH
Q psy16676 108 MKREHKAARTLGIIMGTFILCWL-PFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRD 177 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~ 177 (461)
+++-+|.++.+++==++|+++|+ |+.+-.+-.. .+.......++..+..++..+|..+|-++|++.-+.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~-~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYM-YEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 34455677788888899999999 9765444332 222233346777888889999999999999986543
No 34
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=95.35 E-value=0.31 Score=46.57 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=56.6
Q ss_pred HHHhhhhHHHHHHHHHHH-HHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHh
Q psy16676 326 KMKREHKAARTLGIIMGT-FILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNT 404 (461)
Q Consensus 326 ~~~~~~k~~r~l~~vv~~-F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~ 404 (461)
..+.++|..+.+.+=+++ +++.-+|..++.+...++. .......+...+.-....+.-++.-+.++.+|+.++++
T Consensus 224 T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~----~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~ 299 (302)
T PF10318_consen 224 TRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY----YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSL 299 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc----cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHH
Confidence 446677888888775554 4555668877766554431 12344456667777899999999999999999999999
Q ss_pred hhc
Q psy16676 405 LQC 407 (461)
Q Consensus 405 ~~~ 407 (461)
++|
T Consensus 300 ~~~ 302 (302)
T PF10318_consen 300 FRC 302 (302)
T ss_pred hcC
Confidence 975
No 35
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=94.27 E-value=0.014 Score=56.02 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=83.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCcccccccc
Q psy16676 234 TSSEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDA 313 (461)
Q Consensus 234 ~~~~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (461)
++......+........+.+.+|++|-.++++.+++..+..
T Consensus 190 ~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~--------------------------------------- 230 (307)
T PF10326_consen 190 LNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM--------------------------------------- 230 (307)
T ss_pred echhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc---------------------------------------
Confidence 55566667777788888999999999999999984432210
Q ss_pred CCCCCcchhhHHHHHhhhhHHHHHHHHHHH-HHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhh
Q psy16676 314 HHSTPTKDRNIIKMKREHKAARTLGIIMGT-FILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAY 392 (461)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~k~~r~l~~vv~~-F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~ 392 (461)
..+.++-+++..+.+++=+++ +++.++|..++.+...++-+ . .....+...+.-+-+++||++--+
T Consensus 231 ---------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~-~---~~~~~~~~~~~~~yP~iDpl~~i~ 297 (307)
T PF10326_consen 231 ---------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID-L---GFFSNIISILISLYPAIDPLPVIF 297 (307)
T ss_pred ---------ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC-C---CccccHhhhhEEEEeehhhheeeE
Confidence 111235567888888885555 78889999988777665422 1 122234445556889999999999
Q ss_pred cChHHHHHHH
Q psy16676 393 FNRDFREAFK 402 (461)
Q Consensus 393 ~~~~fR~~~~ 402 (461)
.-++||++++
T Consensus 298 ~ik~yR~~i~ 307 (307)
T PF10326_consen 298 IIKDYRKAIK 307 (307)
T ss_pred eeHHHHHhhC
Confidence 9999999874
No 36
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=94.10 E-value=0.042 Score=52.54 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=52.8
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcc
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~ 187 (461)
.+.++++....+++.+..++.++=|..+.+ ...+++...+..+.--+++..+|+||-.+|+..|+++++.+.
T Consensus 235 ~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f--------~~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~ 306 (313)
T PF10321_consen 235 SKAQRQIFIQSVIICFFHAIAAVIYVYMQF--------FPPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG 306 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHeeee--------ecccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence 345666666666666666665554322221 234567777777788899999999999999999999999886
Q ss_pred c
Q psy16676 188 C 188 (461)
Q Consensus 188 ~ 188 (461)
.
T Consensus 307 ~ 307 (313)
T PF10321_consen 307 P 307 (313)
T ss_pred c
Confidence 4
No 37
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=93.75 E-value=0.33 Score=35.65 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=50.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhch-hHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcCh
Q psy16676 327 MKREHKAARTLGIIMGTFILCWL-PFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNR 395 (461)
Q Consensus 327 ~~~~~k~~r~l~~vv~~F~icw~-P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~ 395 (461)
.++-+|.+|.+++==++|+++|+ |+.+-.+-.. .+.......++..+...+.-+|..+|-++|++.-+
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~-~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYM-YEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence 35556889999999999999999 8766544433 22222344677778888888999999999987653
No 38
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=93.57 E-value=0.098 Score=48.52 Aligned_cols=110 Identities=11% Similarity=0.181 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCCcchhhHHH
Q psy16676 247 ISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTPTKDRNIIK 326 (461)
Q Consensus 247 ~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (461)
+-=++.+.+|+..-+.+...+.||.++.+..+..+. ..+
T Consensus 154 ~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~-----------------------------------------s~r 192 (265)
T PF03402_consen 154 FRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSL-----------------------------------------SPR 192 (265)
T ss_pred hhHHHHHHHHHhhhhhheeeeeecccccccCcCCCC-----------------------------------------CCC
Confidence 334666778888888899999999888776541100 001
Q ss_pred HHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHH
Q psy16676 327 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAF 401 (461)
Q Consensus 327 ~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~ 401 (461)
.-.|.|++++++++|.+|+..+.--.++.++.....+ ..+...+..+++.+=+++-|++---.++++.+..
T Consensus 193 ~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~----~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 193 SSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN----SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC----CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 1347799999999999999999988877554433222 2233345667888889999999988888776643
No 39
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=92.65 E-value=0.5 Score=44.43 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=53.3
Q ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHH
Q psy16676 104 NIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFK 183 (461)
Q Consensus 104 ~~~~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~ 183 (461)
..+++++|.+..+..++--++|++.|+=|.+..-+ .. ...+.+..+.+.-.+..++|++|+...|+++|+.++
T Consensus 198 s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~~----~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~ 270 (274)
T PF10328_consen 198 SKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---SS----NRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIR 270 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cc----ccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHH
Confidence 34456778999999999999999988876655333 11 122233333333456677899999999999999988
Q ss_pred Hhc
Q psy16676 184 NTL 186 (461)
Q Consensus 184 ~~~ 186 (461)
+..
T Consensus 271 ~~~ 273 (274)
T PF10328_consen 271 KKK 273 (274)
T ss_pred hcc
Confidence 753
No 40
>KOG4193|consensus
Probab=92.42 E-value=1.8 Score=45.30 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhhh
Q psy16676 332 KAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406 (461)
Q Consensus 332 k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~ 406 (461)
+..+..++++.++-+.|.=- ++.... + ....+.+++.++-.+.-.+=-|.|+++.++.|++.++.++
T Consensus 514 ~~~~~~l~L~~lLGlTW~fg----i~s~~~-~---~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWIFG----IFSWLP-G---TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhc-c---cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 66778888888888888632 222211 1 1222333333333334445568899999999999999886
No 41
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=92.29 E-value=7.1 Score=38.40 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhhhcccc
Q psy16676 369 DYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 410 (461)
Q Consensus 369 ~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~~~~~ 410 (461)
.....+......+++.+=|.+-.+..+..|+++++.++...+
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 444555666777888887877788999999999998875444
No 42
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=91.97 E-value=1.5 Score=41.71 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcccc
Q psy16676 118 LGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCA 189 (461)
Q Consensus 118 ~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~~~ 189 (461)
+..=.++|++||+|-.+-.+...+.. .+.++..+-..++.+.-.+|.++|++-++-.++.+...++|.
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~----~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~ 271 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGK----NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQ 271 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34566789999999888777766532 233444443457777889999999999999898888777644
No 43
>KOG4564|consensus
Probab=91.03 E-value=0.91 Score=45.54 Aligned_cols=70 Identities=13% Similarity=0.286 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHH-HHHHHHHHHhhhhhHHHhhhcChHHHHHHHHhhh
Q psy16676 329 REHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVV-AIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 406 (461)
Q Consensus 329 ~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~-~~~~~l~~~ns~iNPiiY~~~~~~fR~~~~~~~~ 406 (461)
..+|++|-.++++=+|-|-++.+. +.++.. ....++ .+-..|....-.+=-+||||.|.+.|.++|+.+.
T Consensus 348 ~y~K~vKaTLvLIPLfGI~~ilf~-------~~P~~~-~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~ 418 (473)
T KOG4564|consen 348 QYRKLVKATLVLIPLFGIHYILFA-------FRPDED-TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWS 418 (473)
T ss_pred HHHHHHHHHHHHHHHcCCeeEEEE-------ecCchH-HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHH
Confidence 377888888887777766544321 111111 122222 2233455556667779999999999999999875
No 44
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=90.28 E-value=1.4 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q psy16676 114 AARTLGIIMGTFILCWLPFFLWYV 137 (461)
Q Consensus 114 ~~~~~~~i~~~F~icw~P~~i~~~ 137 (461)
+-+-.+.|+++|.+||+|-.|-.+
T Consensus 242 IK~kFf~I~lVF~iCWlpNIINg~ 265 (405)
T PF02101_consen 242 IKIKFFKIMLVFYICWLPNIINGS 265 (405)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhHH
Confidence 334467788999999999877444
No 45
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=89.89 E-value=0.9 Score=43.44 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=51.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHH
Q psy16676 107 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 181 (461)
Q Consensus 107 ~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~ 181 (461)
..++.+++++-+++=.++-.+|.+|..++..+..+. .........+...+..++|.+|-++-.+.++.||+-
T Consensus 231 ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~---~~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 231 TYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFE---FEDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheec---CCCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 345666777777777777788889987766554332 222344555666778899999999999999999974
No 46
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=89.46 E-value=3.1 Score=39.53 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=55.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHH
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKN 184 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~ 184 (461)
+...++.+|.+.+=+++=+++.+|-.+.+++..+.+. .......+...+..+-+.+||+++.+.-+.||++++|
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY---EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 3456677888888778888888877777776665432 2344445555678888999999999999999999864
No 47
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=85.86 E-value=14 Score=34.40 Aligned_cols=71 Identities=13% Similarity=0.068 Sum_probs=36.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHH
Q psy16676 328 KREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 400 (461)
Q Consensus 328 ~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~ 400 (461)
+.+++..++.++..+++++.-+.-.+..+ ....+..+.......+.....=+-+..-|++--+++++.|+.
T Consensus 204 ~~er~L~~is~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 204 SVERNLTIISFIISFVQLLIAIWQIINSF--AFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 34556666666655555544333333111 111122222233333333333345666799999999999985
No 48
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=85.75 E-value=9.2 Score=36.29 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=50.8
Q ss_pred HHhhhhHHHHHHHHHHH-HHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHHHH
Q psy16676 327 MKREHKAARTLGIIMGT-FILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 400 (461)
Q Consensus 327 ~~~~~k~~r~l~~vv~~-F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR~~ 400 (461)
.+-+++..|.+.+=++. -++|+.|-.+......++ .+...+...+.....-.=+.++|+.-.++-|.||+.
T Consensus 238 ~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~---i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 238 KRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG---IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc---CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 45567788888776555 678999988887655554 224455555555555567899999999999999975
No 49
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=84.31 E-value=5.7 Score=37.80 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=54.8
Q ss_pred hHHHHHhhhHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHH
Q psy16676 104 NIIKMKREHKAARTLGI-IMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAF 182 (461)
Q Consensus 104 ~~~~~~~~~k~~~~~~~-i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~ 182 (461)
..+..+.++|..+.+.+ +.+-+++.-+|...+.+...+... .+....+..++...+..+.-++.-+.++.+|+.+
T Consensus 221 S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~----~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~ 296 (302)
T PF10318_consen 221 SKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYY----NQALNNISFIIISLHGIASTIVMILVHKPYRKFL 296 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccccchHHHHHHHhccHHHHHHHhhccHHHHHHH
Confidence 34445556677766665 444455556687666554333211 1234455566778899999999999999999999
Q ss_pred HHhccc
Q psy16676 183 KNTLQC 188 (461)
Q Consensus 183 ~~~~~~ 188 (461)
+++++|
T Consensus 297 ~~~~~~ 302 (302)
T PF10318_consen 297 LSLFRC 302 (302)
T ss_pred HHHhcC
Confidence 999986
No 50
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=74.75 E-value=83 Score=30.28 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHH--HHHHHHHHHHhhhhhHHHhhhcChHHHHHH
Q psy16676 324 IIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYV--VAIFFWIGYFNSTLNPLIYAYFNRDFREAF 401 (461)
Q Consensus 324 ~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~--~~~~~~l~~~ns~iNPiiY~~~~~~fR~~~ 401 (461)
+-+.+++.|+++++..++.+..+.-+-+.+..+.........+.+.+. ..+. ...-..+.+=|+++....++.|++.
T Consensus 222 RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r~~~ 300 (324)
T PF10292_consen 222 RYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELN-HIFPLYSIISPLILYRKIKKIRKKR 300 (324)
T ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999888888887777777776665555443333222222 1222 2444678888999999999999888
Q ss_pred HHhhh
Q psy16676 402 KNTLQ 406 (461)
Q Consensus 402 ~~~~~ 406 (461)
.+-+.
T Consensus 301 ~~~l~ 305 (324)
T PF10292_consen 301 KKRLE 305 (324)
T ss_pred HHHHH
Confidence 77664
No 51
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=64.78 E-value=6.1 Score=36.76 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHH
Q psy16676 108 MKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAF 182 (461)
Q Consensus 108 ~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~ 182 (461)
...|.|+++++++.|..|++.|.--.++.++...... .++...+..+++.+-+.+-|++--..+++..+-+
T Consensus 193 ~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~----~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 193 SSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN----SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC----CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 3468899999999999999999987776554333221 2233455667888889999999888887766543
No 52
>KOG2575|consensus
Probab=62.71 E-value=6.8 Score=38.16 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHhchhHHHH
Q psy16676 330 EHKAARTLGIIMGTFILCWLPFFLW 354 (461)
Q Consensus 330 ~~k~~r~l~~vv~~F~icw~P~~v~ 354 (461)
-.++++.-++|+++|+++|+|+...
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999653
No 53
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=62.33 E-value=13 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=16.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhH
Q psy16676 105 IIKMKREHKAARTLGIIMGTFILCWL 130 (461)
Q Consensus 105 ~~~~~~~~k~~~~~~~i~~~F~icw~ 130 (461)
.+++++.+|.-.+++.++++|++-|+
T Consensus 29 ~k~qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 29 RKRQKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777777777666554
No 54
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=59.77 E-value=77 Score=29.92 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy16676 332 KAARTLGIIMGTFILCWLPFFLWYVITS 359 (461)
Q Consensus 332 k~~r~l~~vv~~F~icw~P~~v~~l~~~ 359 (461)
|-.| ++++.++.+++.+|..++.++..
T Consensus 196 Rf~R-L~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 196 RFFR-LLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 67788888999999999988843
No 55
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=56.56 E-value=66 Score=29.99 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccccCCCCCCCCCCCCCCcccCCccccccccCCCCC
Q psy16676 239 GNAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGDLAVGAGKLTLEDAHHSTP 318 (461)
Q Consensus 239 ~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (461)
.-.+.-.++.+.+|++ |+..|+.|..++-..++..
T Consensus 186 ~IqiiE~ilQ~~IPi~-Il~iYiAIIiKI~~MKkss-------------------------------------------- 220 (305)
T PF04789_consen 186 GIQIIEIILQFGIPIF-ILVIYIAIIIKIIKMKKSS-------------------------------------------- 220 (305)
T ss_pred chhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHhhcc--------------------------------------------
Confidence 3456778899999976 4567887776664333210
Q ss_pred cchhhHHHHHhhhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCCCChhHHHHHHHHHHHHhhhhhHHHhhhcChHHH
Q psy16676 319 TKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFR 398 (461)
Q Consensus 319 ~~~~~~~~~~~~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiiY~~~~~~fR 398 (461)
..+.|.+++|--+.|.++|- ++-.|+.+-..+. ........+..+...+-..--+.-|..+.+.+++.|
T Consensus 221 -------LnK~Ei~ILKQAifIFvlFQ---~ss~VFl~~qt~~-~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eir 289 (305)
T PF04789_consen 221 -------LNKNEITILKQAIFIFVLFQ---ASSCVFLLCQTFK-FNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIR 289 (305)
T ss_pred -------CCchhHHHHHHHHHHHHHHH---HHHHHHHhheeee-ecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHH
Confidence 11346677777666555554 4444444333322 111122344445555666667889999999999888
Q ss_pred HHHHHh
Q psy16676 399 EAFKNT 404 (461)
Q Consensus 399 ~~~~~~ 404 (461)
|-+-.-
T Consensus 290 k~~s~k 295 (305)
T PF04789_consen 290 KLVSSK 295 (305)
T ss_pred HHHHhh
Confidence 776543
No 56
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=55.30 E-value=22 Score=24.59 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHhch
Q psy16676 327 MKREHKAARTLGIIMGTFILCWL 349 (461)
Q Consensus 327 ~~~~~k~~r~l~~vv~~F~icw~ 349 (461)
.++.+|.-.++++++++|++-|+
T Consensus 32 qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 32 QKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677777777766664
No 57
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=54.52 E-value=37 Score=32.49 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 246 SISFWIPCTIMVFTYLAIFKEANRQE 271 (461)
Q Consensus 246 ~~~f~iP~iii~~~Y~~I~~~lr~~~ 271 (461)
++...+=+++++++.+.+++++|+.+
T Consensus 201 l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 201 LFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445667788888999998876
No 58
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=53.74 E-value=2.1e+02 Score=27.47 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=50.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHH--HHHHHhhhHHHHHHHhccHHHHHHH
Q psy16676 105 IIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFF--WIGYFNSTLNPLIYAYFNRDFREAF 182 (461)
Q Consensus 105 ~~~~~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~--~l~~~ns~~NP~iY~~~~~~fr~~~ 182 (461)
+=+..++.|+.+++..++.+..+.-+-+.+..+.........+.+. ...+.. ...-..+.+=|++.....++.|+..
T Consensus 222 RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~ 300 (324)
T PF10292_consen 222 RYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPN-YFALAELNHIFPLYSIISPLILYRKIKKIRKKR 300 (324)
T ss_pred HHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888877777766666666555444333322222221 222222 2445678888999999999988887
Q ss_pred HHhcc
Q psy16676 183 KNTLQ 187 (461)
Q Consensus 183 ~~~~~ 187 (461)
++-+.
T Consensus 301 ~~~l~ 305 (324)
T PF10292_consen 301 KKRLE 305 (324)
T ss_pred HHHHH
Confidence 76654
No 59
>KOG2575|consensus
Probab=53.45 E-value=15 Score=35.91 Aligned_cols=24 Identities=33% Similarity=0.784 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFL 134 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i 134 (461)
-.+++++.++|++.|+++|+|+..
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~ 277 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLL 277 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999864
No 60
>KOG4193|consensus
Probab=52.46 E-value=91 Score=32.96 Aligned_cols=67 Identities=10% Similarity=0.198 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcc
Q psy16676 113 KAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQ 187 (461)
Q Consensus 113 k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~ 187 (461)
+.++..+..+.++-+.|. +.++.++. . ......+++.++-.+.-.+=-++|+++.++.|++.++.++
T Consensus 514 ~~~~~~l~L~~lLGlTW~-fgi~s~~~----~---~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWI-FGIFSWLP----G---TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhc----c---cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 567777777777777776 33332221 1 1122233333333444446677899999999999999887
No 61
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=48.45 E-value=3.7 Score=39.23 Aligned_cols=73 Identities=19% Similarity=0.384 Sum_probs=48.9
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHH
Q psy16676 107 KMKREHKAARTLGI-IMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFK 183 (461)
Q Consensus 107 ~~~~~~k~~~~~~~-i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~ 183 (461)
.++-++++.+.+++ .++=+++.++|..++.+...+.. +. .....+...+..+.+++||++--+.-++||++++
T Consensus 234 ~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i-~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 234 TRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGI-DL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred hHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCC-CC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 33445566666654 45667788899887766544331 11 1223344556778899999999999999999864
No 62
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=48.19 E-value=27 Score=26.91 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy16676 248 SFWIPCTIMVFTYLAIFKEANRQEKQLHSRH 278 (461)
Q Consensus 248 ~f~iP~iii~~~Y~~I~~~lr~~~~~~~~~~ 278 (461)
.++.++++++++|..|++--+++.+..++..
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml 41 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRKRMKEHQELL 41 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 3444466778899999988888877766543
No 63
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=47.73 E-value=2.1e+02 Score=28.30 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCCC-CChh----HHHHHHHHHHHHhhhhhHHHhh-hcChHHHHHHHHh
Q psy16676 331 HKAARTLGIIMGTFILCWLPFFLWYVITSLCGDAC-DCPD----YVVAIFFWIGYFNSTLNPLIYA-YFNRDFREAFKNT 404 (461)
Q Consensus 331 ~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~~-~~~~----~~~~~~~~l~~~ns~iNPiiY~-~~~~~fR~~~~~~ 404 (461)
...+...+.-++-++++.+|+.++.++........ +... .+..+...+...--.+.|++|. +...+..+.++++
T Consensus 166 ~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~ 245 (390)
T PF00375_consen 166 FESLNEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAM 245 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHH
Confidence 35555667778889999999999988776553321 1111 1111111222234578899999 5555777777776
Q ss_pred hh
Q psy16676 405 LQ 406 (461)
Q Consensus 405 ~~ 406 (461)
++
T Consensus 246 ~~ 247 (390)
T PF00375_consen 246 LP 247 (390)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 64
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=45.12 E-value=64 Score=30.75 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=47.7
Q ss_pred HHHHhhhHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHH
Q psy16676 106 IKMKREHKAARTLGIIM-GTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 181 (461)
Q Consensus 106 ~~~~~~~k~~~~~~~i~-~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~ 181 (461)
+..+-++++.|.+.+=+ +=-++|++|-.+.+....+. .+...+...+.......=+++||+.-.+.-+.||+.
T Consensus 236 ~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~---i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 236 KTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG---IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc---CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 33444566666665533 33577888877766554443 233455555555556667889999999999999875
No 65
>KOG3827|consensus
Probab=41.43 E-value=13 Score=35.92 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHhchhHHHHHHHHHhh
Q psy16676 330 EHKAARTLGIIMGTFILCWLPFFLWYVITSLC 361 (461)
Q Consensus 330 ~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~ 361 (461)
+.|.-.|+++-.+.|++.|+=|.++..+.++.
T Consensus 59 D~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~ 90 (400)
T KOG3827|consen 59 DLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYA 90 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666788899999999999998766555544
No 66
>KOG3827|consensus
Probab=41.42 E-value=15 Score=35.52 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYA 172 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~ 172 (461)
+.|.-.|+++-.+.|++.|+=|.+++.+..+...+....+.....+.++..+++...-|+|.
T Consensus 59 D~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFS 120 (400)
T KOG3827|consen 59 DLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFS 120 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheee
Confidence 44556788888899999999998766655543332222221222334556666666666554
No 67
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=39.34 E-value=1.3e+02 Score=20.79 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHhhhHHHHHHHHHHHHH-HHHhHHHHH
Q psy16676 107 KMKREHKAARTLGIIMGTF-ILCWLPFFL 134 (461)
Q Consensus 107 ~~~~~~k~~~~~~~i~~~F-~icw~P~~i 134 (461)
..++++|...+.+.++.+| ++|-+-..+
T Consensus 24 ~~r~RrRrc~~~v~~v~~~~~~c~~S~~l 52 (60)
T PF06072_consen 24 ASRRRRRRCRLAVAIVFAVVALCVLSGGL 52 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666555555555 666665433
No 68
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=39.22 E-value=1.6e+02 Score=27.32 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=39.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHH
Q psy16676 109 KREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREA 181 (461)
Q Consensus 109 ~~~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~ 181 (461)
+.|+++.++.++..+++++.-+...+.. ..... ...+.......+..+..=+-+...|++--+++++.|+.
T Consensus 204 ~~er~L~~is~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 204 SVERNLTIISFIISFVQLLIAIWQIINS-FAFFF-DFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-ccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 4466666666666666665444332211 11111 11222233344444444555677899999999999985
No 69
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=38.19 E-value=3.9e+02 Score=26.16 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhcccccc
Q psy16676 150 DYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 191 (461)
Q Consensus 150 ~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~~~~~ 191 (461)
.....+......+++.+=|.+-.+..+.+|+.+++.+....|
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 344555666778888888888888999999999988875443
No 70
>PHA01815 hypothetical protein
Probab=38.18 E-value=1.1e+02 Score=19.67 Aligned_cols=29 Identities=10% Similarity=0.034 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 241 AIVSSSISFWIPCTIMVFTYLAIFKEANR 269 (461)
Q Consensus 241 ~i~~~~~~f~iP~iii~~~Y~~I~~~lr~ 269 (461)
.+..+++.|++.+++...+|+++-..+.-
T Consensus 7 i~ivfllaflitliilmt~~irvsfgvlf 35 (55)
T PHA01815 7 IAIVFLLAFLITLIILMTLHIRVSFGVLF 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999988766543
No 71
>PF13853 7tm_4: Olfactory receptor
Probab=36.78 E-value=0.12 Score=43.40 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=28.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 236 SEFGNAIVSSSISFWIPCTIMVFTYLAIFKEANRQE 271 (461)
Q Consensus 236 ~~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~ 271 (461)
.+..+..+...+..+.|+++|+++|.+|+..+.|..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki~ 88 (144)
T PF13853_consen 53 INEIVGFVVAIFILLGPLLLILFSYIRILRAVLKIP 88 (144)
T ss_pred hhheeeecccceeEEEEeeccccceeEEEehhhccc
Confidence 344455566677788999999999999999887653
No 72
>COG2322 Predicted membrane protein [Function unknown]
Probab=36.73 E-value=2.7e+02 Score=23.81 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=23.2
Q ss_pred HhhhhHHHHHHHHHHHHHHhchhHHHHHH
Q psy16676 328 KREHKAARTLGIIMGTFILCWLPFFLWYV 356 (461)
Q Consensus 328 ~~~~k~~r~l~~vv~~F~icw~P~~v~~l 356 (461)
++++++.-+-+...++|+++++-+....-
T Consensus 73 ~~Hk~aMltA~~l~l~FlvlYltr~~l~~ 101 (177)
T COG2322 73 EKHKRAMLTAFTLALVFLVLYLTRHGLGG 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56778888888999999999988765543
No 73
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=35.14 E-value=58 Score=19.71 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLA 262 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~ 262 (461)
...+...+..++|.+..++.|+.
T Consensus 6 lgfiAt~Lfi~iPt~FLlilYvq 28 (35)
T PRK04989 6 LGFVASLLFVLVPTVFLIILYIQ 28 (35)
T ss_pred HHHHHHHHHHHHHHHHHHHHhee
Confidence 34556677888999999999875
No 74
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=32.04 E-value=75 Score=18.98 Aligned_cols=23 Identities=9% Similarity=0.411 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLA 262 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~ 262 (461)
.......+...+|.+..++.|+.
T Consensus 6 l~fiAt~Lfi~iPt~FLiilYvq 28 (33)
T TIGR03038 6 LGFIATLLFILVPTVFLLILYIQ 28 (33)
T ss_pred HHHHHHHHHHHHHHHHHHHHhee
Confidence 34455677888999999999874
No 75
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=31.96 E-value=1.2e+02 Score=18.51 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLA 262 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~ 262 (461)
|.-+..++.|++-+.+|++|+..
T Consensus 10 ylc~l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 10 YLCFLSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554
No 76
>CHL00080 psbM photosystem II protein M
Probab=30.95 E-value=72 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.486 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLA 262 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~ 262 (461)
.......+...+|.+..++.|++
T Consensus 6 lgfiAt~LFi~iPt~FLlilyvk 28 (34)
T CHL00080 6 LAFIATALFILVPTAFLLIIYVK 28 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 44556677888999999998874
No 77
>PRK11877 psaI photosystem I reaction center subunit VIII; Reviewed
Probab=29.93 E-value=1.1e+02 Score=18.96 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 241 AIVSSSISFWIPCTIMVFTYLAI 263 (461)
Q Consensus 241 ~i~~~~~~f~iP~iii~~~Y~~I 263 (461)
.++.=+++.++|.+.|...+..|
T Consensus 12 sI~VPlVGlvfPai~Mallf~yI 34 (38)
T PRK11877 12 WIFVPLVGWVFPAVFMVLLGRYI 34 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788899999998887766
No 78
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=29.40 E-value=1.2e+02 Score=18.68 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 241 AIVSSSISFWIPCTIMVFTYLAI 263 (461)
Q Consensus 241 ~i~~~~~~f~iP~iii~~~Y~~I 263 (461)
.++.-+.+.++|.+.|...+..|
T Consensus 8 sI~VPlVGlvfPai~Ma~lf~yI 30 (36)
T CHL00186 8 SILVPLVGLVFPAIAMASLFLYI 30 (36)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHh
Confidence 46667788899999998887766
No 79
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=28.98 E-value=1.3e+02 Score=17.76 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16676 241 AIVSSSISFWIPCTIMVFTYLA 262 (461)
Q Consensus 241 ~i~~~~~~f~iP~iii~~~Y~~ 262 (461)
......+...+|....++.|++
T Consensus 7 ~fiAtaLfi~iPt~FLiilyvq 28 (31)
T PF05151_consen 7 AFIATALFILIPTAFLIILYVQ 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhheEee
Confidence 3455667788899999888875
No 80
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=28.49 E-value=66 Score=24.05 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhH
Q psy16676 114 AARTLGIIMGTFILCWL 130 (461)
Q Consensus 114 ~~~~~~~i~~~F~icw~ 130 (461)
+.-|.+++++.+++||.
T Consensus 40 I~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445566667777776
No 81
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=26.59 E-value=1.4e+02 Score=19.47 Aligned_cols=31 Identities=10% Similarity=-0.040 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 242 IVSSSISFWIPCTIMVFTYLAIFKEANRQEK 272 (461)
Q Consensus 242 i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~ 272 (461)
.+....-.+..+++++++++.+++..+++++
T Consensus 5 ~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~k 35 (49)
T PF05545_consen 5 TLQGFARSIGTVLFFVFFIGIVIWAYRPRNK 35 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 3444444555555556666666666665543
No 82
>KOG4564|consensus
Probab=26.54 E-value=30 Score=34.99 Aligned_cols=71 Identities=11% Similarity=0.297 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHHHHHhccHHHHHHHHHhccc
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQC 188 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~iY~~~~~~fr~~~~~~~~~ 188 (461)
.+|++|-.++.+-+|-|-++.+ .+.+...........+-.+|..+.-.+=-+||+|.|.+.|.++|+.+..
T Consensus 349 y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r 419 (473)
T KOG4564|consen 349 YRKLVKATLVLIPLFGIHYILF-------AFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSR 419 (473)
T ss_pred HHHHHHHHHHHHHHcCCeeEEE-------EecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHh
Confidence 6788888887777776643322 1221111011112223345666777788899999999999999998763
No 83
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.29 E-value=77 Score=25.25 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16676 249 FWIPCTIMVFTYLAIFKEANRQEKQL 274 (461)
Q Consensus 249 f~iP~iii~~~Y~~I~~~lr~~~~~~ 274 (461)
.++|+++|+..|+.+++--+++.+..
T Consensus 5 ~il~~vv~~~i~yf~iRPQkKr~Ke~ 30 (113)
T PRK06531 5 TIIMFVVMLGLIFFMQRQQKKQAQER 30 (113)
T ss_pred HHHHHHHHHHHHHheechHHHHHHHH
Confidence 34455555544444554444444433
No 84
>KOG3500|consensus
Probab=25.95 E-value=45 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.616 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHhchhHHHHHHHH
Q psy16676 331 HKAARTLGIIMGTFILCWLPFFLWYVIT 358 (461)
Q Consensus 331 ~k~~r~l~~vv~~F~icw~P~~v~~l~~ 358 (461)
+-+++.+++++. +.||+-..+.++.+
T Consensus 31 ~~li~~~lvlTA--VCCwlfWli~ylaQ 56 (84)
T KOG3500|consen 31 RGLIRCMLVLTA--VCCWLFWLIVYLAQ 56 (84)
T ss_pred cChhHHHHHHHH--HHHHHHHHHHHHHH
Confidence 456666665555 89999877776654
No 85
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.77 E-value=1.5e+02 Score=21.94 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy16676 253 CTIMVFTYLAIFKEANRQEKQLHSRH 278 (461)
Q Consensus 253 ~iii~~~Y~~I~~~lr~~~~~~~~~~ 278 (461)
+++++++|..+++.-+++.++.....
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~~m~ 34 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQEML 34 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHhhheecHHHHHHHHHHHHH
Confidence 46667778877777776666555443
No 86
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=25.47 E-value=1.4e+02 Score=33.01 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhh
Q psy16676 334 ARTLGIIMGTFILCWLPFFLWYVITSLC 361 (461)
Q Consensus 334 ~r~l~~vv~~F~icw~P~~v~~l~~~~~ 361 (461)
.-+++.|.+.|+++|+-..+..++..++
T Consensus 460 ~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G 487 (806)
T PF05478_consen 460 NFLMAGVGLSFLFSWFLMLLVLFYFLVG 487 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888999998877776665554
No 87
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.42 E-value=3.3e+02 Score=21.20 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhhhHHHH
Q psy16676 111 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDCPDYVVAIFFWIGYFNSTLNPL 169 (461)
Q Consensus 111 ~~k~~~~~~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NP~ 169 (461)
++.+.+.+..+-.+=+-.-+|..+-.++..+........+++..+..+++.+-.|.|-+
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAW 93 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555556777666666655444444455556666788888888864
No 88
>TIGR03052 PS_I_psaI photosystem I reaction center subunit VIII. Members of this protein family are PsaI, subunit VIII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.
Probab=24.96 E-value=77 Score=18.73 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16676 242 IVSSSISFWIPCTIMVFTYLAI 263 (461)
Q Consensus 242 i~~~~~~f~iP~iii~~~Y~~I 263 (461)
++.-+.+.++|.+.|...+..|
T Consensus 6 I~VPlVglvfPai~Ma~lf~yI 27 (31)
T TIGR03052 6 IFVPLVGLVFPAVFMALLFRYI 27 (31)
T ss_pred eehhHHHHHHHHHHHHHHHHhe
Confidence 4555778889999998877665
No 89
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=1.6e+02 Score=20.43 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHS 276 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I~~~lr~~~~~~~~ 276 (461)
|-+..-..-.+.-+.+.+++|..|+...|.++|....
T Consensus 3 ~e~~~~~a~a~~t~~~~l~fiavi~~ayr~~~K~~~d 39 (60)
T COG4736 3 YEMMRGFADAWGTIAFTLFFIAVIYFAYRPGKKGEFD 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 3344455555555566666777777777776655433
No 90
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=24.36 E-value=2.6e+02 Score=20.68 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 237 EFGNAIVSSSISFWIPCTIMVFTYLAIFKE 266 (461)
Q Consensus 237 ~~~y~i~~~~~~f~iP~iii~~~Y~~I~~~ 266 (461)
...+.++..+ ..++|+-++.+.|..=...
T Consensus 18 yl~~sI~s~l-~Cc~PlGi~Ai~~s~kv~~ 46 (82)
T PF04505_consen 18 YLVLSIFSTL-CCCWPLGIVAIVYSSKVRS 46 (82)
T ss_pred ceeHHHHHHH-HHHhhHHHHHheechhhHH
Confidence 3445555544 3345888888888764333
No 91
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=23.38 E-value=1.9e+02 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHH
Q psy16676 110 REHKAARTLGIIMGTFILCWLPFFL 134 (461)
Q Consensus 110 ~~~k~~~~~~~i~~~F~icw~P~~i 134 (461)
.-+|+.++.++|+++|+++|.|+..
T Consensus 219 ~~~~~~~lg~~Vi~~f~~~~~PF~~ 243 (469)
T PF03155_consen 219 SIKRLIKLGIVVIATFALSFGPFLY 243 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999963
No 92
>PHA02909 hypothetical protein; Provisional
Probab=22.83 E-value=2.5e+02 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=4.8
Q ss_pred cccCCCCcceec
Q psy16676 211 LRYDDRTKSVYS 222 (461)
Q Consensus 211 ~~~~~~~~~~~s 222 (461)
+.+.......+.
T Consensus 17 vdygngkkvyyt 28 (72)
T PHA02909 17 VDYGNGKKVYYT 28 (72)
T ss_pred EecCCCeEEEEe
Confidence 334444443333
No 93
>COG3924 Predicted membrane protein [Function unknown]
Probab=22.39 E-value=1.4e+02 Score=21.37 Aligned_cols=25 Identities=8% Similarity=0.038 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 243 VSSSISFWIPCTIMVFTYLAIFKEA 267 (461)
Q Consensus 243 ~~~~~~f~iP~iii~~~Y~~I~~~l 267 (461)
-.-+..+.+|++.|++||..|-...
T Consensus 45 WFE~aCi~lPllFi~l~~~mvkfif 69 (80)
T COG3924 45 WFEMACILLPLLFIVLCWAMVKFIF 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446778899999999998875544
No 94
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.23 E-value=3.1e+02 Score=19.81 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy16676 237 EFGNAIVSSSISFWIPCTIM-VFTYLAIFKEANRQEKQ 273 (461)
Q Consensus 237 ~~~y~i~~~~~~f~iP~iii-~~~Y~~I~~~lr~~~~~ 273 (461)
.-.|..+..++..+.|+.++ .++-+++.+.+.+..++
T Consensus 17 kdP~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 17 KDPYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred cChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777788888896665 45666676766655543
No 95
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=22.21 E-value=6.2e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHHHHhchhHHHHHHHHHhhCCC
Q psy16676 330 EHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDA 364 (461)
Q Consensus 330 ~~k~~r~l~~vv~~F~icw~P~~v~~l~~~~~~~~ 364 (461)
...+.+++.+.++...+.-+=..+.......+|..
T Consensus 59 ~h~~~~l~~~~l~l~~~s~~l~~ih~~~ya~nG~G 93 (257)
T PF10192_consen 59 MHPVYKLFSAALLLQFLSLLLNLIHYIVYAYNGVG 93 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 44677777777777777776666665555555443
No 96
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.62 E-value=1e+02 Score=25.20 Aligned_cols=9 Identities=11% Similarity=0.446 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy16676 264 FKEANRQEK 272 (461)
Q Consensus 264 ~~~lr~~~~ 272 (461)
++.-+|+++
T Consensus 20 ~~~~rRR~r 28 (130)
T PF12273_consen 20 YCHNRRRRR 28 (130)
T ss_pred HHHHHHHhh
Confidence 333333333
No 97
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.20 E-value=1.3e+02 Score=22.53 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=17.1
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy16676 251 IP-CTIMVFTYLAIFKEANRQEKQLHSR 277 (461)
Q Consensus 251 iP-~iii~~~Y~~I~~~lr~~~~~~~~~ 277 (461)
+| +++++++|..+.+--+++.++....
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~~m 34 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHKKL 34 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHHHH
Confidence 44 3445677888877777776655443
No 98
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=21.07 E-value=1.8e+02 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.415 Sum_probs=10.5
Q ss_pred HhhhhHHHHHHHHHHHH--HHhchhH
Q psy16676 328 KREHKAARTLGIIMGTF--ILCWLPF 351 (461)
Q Consensus 328 ~~~~k~~r~l~~vv~~F--~icw~P~ 351 (461)
+++.|.+++++..+++. +.-|+||
T Consensus 37 r~R~r~~~~~~~li~aLi~v~vvL~~ 62 (64)
T COG4068 37 RKRQRNFMILMFLILALILVMVVLPY 62 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444444433333 3345554
No 99
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=20.77 E-value=85 Score=20.36 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16676 240 NAIVSSSISFWIPCTIMVFTYLAI 263 (461)
Q Consensus 240 y~i~~~~~~f~iP~iii~~~Y~~I 263 (461)
...+...+...+|.+.+++.|+.-
T Consensus 6 lgfiAtaLFi~iPT~FLlilYVkT 29 (50)
T PRK14094 6 FGFVASLLFVGVPTIFLIGLFIST 29 (50)
T ss_pred HHHHHHHHHHHHHHHHhhheeEEe
Confidence 445566778889999988888653
Done!