RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16676
(461 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 80.4 bits (199), Expect = 4e-17
Identities = 31/151 (20%), Positives = 58/151 (38%), Gaps = 44/151 (29%)
Query: 241 AIVSSSISFWIPCTIMVFTYLAIFKEANRQEKQLHSRHYGNQLLLGNHGRDASYSNSNGD 300
++S+ + F +P +++ Y I + ++ + S+
Sbjct: 144 TLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQA---------------------- 181
Query: 301 LAVGAGKLTLEDAHHSTPTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL 360
R +E KAA+ L +++ F+LCWLP+ + ++ SL
Sbjct: 182 ---------------------RAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSL 220
Query: 361 CGDACDC-PDYVVAIFFWIGYFNSTLNPLIY 390
C + + I W+ Y NS LNP+IY
Sbjct: 221 CPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251
Score = 75.8 bits (187), Expect = 2e-15
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 99 PTKDRNIIKMKREHKAARTLGIIMGTFILCWLPFFLWYVITSLCGDACDC-PDYVVAIFF 157
++ R +E KAA+ L +++ F+LCWLP+ + ++ SLC + + I
Sbjct: 178 ASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITL 237
Query: 158 WIGYFNSTLNPLIY 171
W+ Y NS LNP+IY
Sbjct: 238 WLAYVNSCLNPIIY 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 40.5 bits (95), Expect = 0.001
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 107 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL----CGDACDCPDYVVAIFF---WI 159
K K+ KA + + II+ F++ WLPF + + SL C Y+ I
Sbjct: 235 KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEII 294
Query: 160 GYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCS 192
+ +NPLIYA+ + F + K +L+ F S
Sbjct: 295 SLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327
Score = 40.5 bits (95), Expect = 0.001
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 326 KMKREHKAARTLGIIMGTFILCWLPFFLWYVITSL----CGDACDCPDYVVAIFF---WI 378
K K+ KA + + II+ F++ WLPF + + SL C Y+ I
Sbjct: 235 KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEII 294
Query: 379 GYFNSTLNPLIYAYFNRDFREAFKNTLQCAFCS 411
+ +NPLIYA+ + F + K +L+ F S
Sbjct: 295 SLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 33.3 bits (76), Expect = 0.22
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 106 IKMKREHKAARTLGIIMG--TF-ILCWLPFFLWYVITSLCGDA---CDCPD-----YVVA 154
+K + R++ II+ TF ++ W+PF + I SL C Y +
Sbjct: 216 LKNCKNKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSID 275
Query: 155 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 191
I I + + +NP+IYA+ ++F++ FKN FC
Sbjct: 276 IAELISFVHCCVNPIIYAFVGKNFKKVFKNM----FC 308
Score = 33.3 bits (76), Expect = 0.22
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 325 IKMKREHKAARTLGIIMG--TF-ILCWLPFFLWYVITSLCGDA---CDCPD-----YVVA 373
+K + R++ II+ TF ++ W+PF + I SL C Y +
Sbjct: 216 LKNCKNKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSID 275
Query: 374 IFFWIGYFNSTLNPLIYAYFNRDFREAFKNTLQCAFC 410
I I + + +NP+IYA+ ++F++ FKN FC
Sbjct: 276 IAELISFVHCCVNPIIYAFVGKNFKKVFKNM----FC 308
>gnl|CDD|177562 PHA03234, PHA03234, DNA packaging protein UL33; Provisional.
Length = 338
Score = 30.7 bits (69), Expect = 1.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 167 NPLIYAYFNRDFREAFKNTLQ----CAFCSLCRREPSDLDELD 205
NPL+YA+ DFR F Q C C+ +++ D E D
Sbjct: 295 NPLVYAFTGGDFRLRFTACFQDFFKCNLCNSQKKKDRDALEHD 337
Score = 30.7 bits (69), Expect = 1.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 386 NPLIYAYFNRDFREAFKNTLQ----CAFCSLCRREPSDLDELD 424
NPL+YA+ DFR F Q C C+ +++ D E D
Sbjct: 295 NPLVYAFTGGDFRLRFTACFQDFFKCNLCNSQKKKDRDALEHD 337
>gnl|CDD|236310 PRK08601, PRK08601, NADH dehydrogenase subunit 5; Validated.
Length = 509
Score = 28.8 bits (65), Expect = 7.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 105 IIKMKREHKAARTLGIIMG-TFILCWLPFFL 134
+I + + K AR I G F++ WL L
Sbjct: 142 LIGLNKGWKVAREAAKISGMLFLISWLALAL 172
Score = 28.8 bits (65), Expect = 7.7
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 324 IIKMKREHKAARTLGIIMG-TFILCWLPFFL 353
+I + + K AR I G F++ WL L
Sbjct: 142 LIGLNKGWKVAREAAKISGMLFLISWLALAL 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.436
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,438,775
Number of extensions: 2254537
Number of successful extensions: 2788
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2782
Number of HSP's successfully gapped: 31
Length of query: 461
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 361
Effective length of database: 6,502,202
Effective search space: 2347294922
Effective search space used: 2347294922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)